Query 025995
Match_columns 245
No_of_seqs 202 out of 1949
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:27:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 4.3E-73 9.3E-78 466.1 11.9 244 1-245 59-303 (303)
2 KOG0373 Serine/threonine speci 100.0 5.1E-67 1.1E-71 424.5 13.8 244 1-245 62-306 (306)
3 PTZ00239 serine/threonine prot 100.0 1.1E-62 2.3E-67 430.0 23.0 243 2-244 60-302 (303)
4 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.7E-62 3.6E-67 426.3 21.3 227 2-229 59-285 (285)
5 PTZ00480 serine/threonine-prot 100.0 3.5E-62 7.5E-67 428.2 22.1 241 2-244 76-318 (320)
6 KOG0374 Serine/threonine speci 100.0 2.6E-62 5.7E-67 430.3 16.8 227 1-228 75-303 (331)
7 cd07420 MPP_RdgC Drosophila me 100.0 1.5E-61 3.3E-66 424.7 20.8 224 1-226 67-321 (321)
8 PTZ00244 serine/threonine-prot 100.0 1.4E-60 2.9E-65 415.5 19.9 224 2-227 69-293 (294)
9 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.6E-60 3.5E-65 418.8 20.3 228 2-231 77-307 (316)
10 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.5E-60 3.2E-65 415.6 19.6 225 2-228 67-292 (293)
11 smart00156 PP2Ac Protein phosp 100.0 2.5E-59 5.3E-64 404.8 21.7 225 2-228 45-270 (271)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 4E-59 8.7E-64 409.0 21.0 227 2-231 60-300 (305)
13 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.7E-56 3.6E-61 393.9 21.2 225 2-227 65-311 (311)
14 KOG0371 Serine/threonine prote 100.0 7.2E-58 1.6E-62 378.5 11.1 244 1-245 76-319 (319)
15 cd07418 MPP_PP7 PP7, metalloph 100.0 3.2E-56 7E-61 396.6 20.6 227 2-229 83-367 (377)
16 KOG0375 Serine-threonine phosp 100.0 7.7E-56 1.7E-60 380.9 7.5 229 1-231 104-345 (517)
17 KOG0377 Protein serine/threoni 100.0 2.1E-47 4.5E-52 335.8 10.6 229 3-233 183-437 (631)
18 KOG0376 Serine-threonine phosp 100.0 3.7E-43 8.1E-48 314.2 11.6 236 1-238 230-470 (476)
19 cd00144 MPP_PPP_family phospho 100.0 4.9E-32 1.1E-36 228.2 18.7 200 2-213 15-224 (225)
20 PRK13625 bis(5'-nucleosyl)-tet 99.9 3.5E-22 7.6E-27 170.9 16.5 174 2-217 18-225 (245)
21 cd07425 MPP_Shelphs Shewanella 99.9 7.3E-23 1.6E-27 171.0 11.8 156 10-200 31-198 (208)
22 cd07413 MPP_PA3087 Pseudomonas 99.9 4.6E-21 1E-25 161.7 13.9 93 11-106 33-143 (222)
23 cd07423 MPP_PrpE Bacillus subt 99.8 4.5E-20 9.7E-25 156.9 14.5 184 3-217 19-222 (234)
24 PRK00166 apaH diadenosine tetr 99.8 6.4E-20 1.4E-24 159.0 14.8 210 2-229 18-270 (275)
25 cd07421 MPP_Rhilphs Rhilph pho 99.8 6.5E-19 1.4E-23 152.1 17.5 172 12-215 35-292 (304)
26 PHA02239 putative protein phos 99.8 2.3E-19 4.9E-24 152.4 12.8 149 11-201 29-221 (235)
27 PRK11439 pphA serine/threonine 99.8 4.3E-19 9.4E-24 149.3 12.6 161 2-201 34-208 (218)
28 cd07422 MPP_ApaH Escherichia c 99.8 3E-19 6.6E-24 153.2 11.6 108 2-114 16-129 (257)
29 cd07424 MPP_PrpA_PrpB PrpA and 99.8 2.2E-17 4.7E-22 137.9 15.1 165 3-201 19-197 (207)
30 TIGR00668 apaH bis(5'-nucleosy 99.7 4.6E-18 1E-22 146.5 9.8 108 2-114 18-131 (279)
31 PRK09968 serine/threonine-spec 99.7 3.2E-16 6.9E-21 131.9 13.7 161 3-201 33-208 (218)
32 COG0639 ApaH Diadenosine tetra 98.9 9.4E-09 2E-13 79.6 9.3 141 60-202 5-154 (155)
33 PF00149 Metallophos: Calcineu 98.9 3.3E-08 7.2E-13 76.9 10.9 135 10-179 30-199 (200)
34 cd07397 MPP_DevT Myxococcus xa 98.2 1.3E-05 2.8E-10 68.2 10.9 133 13-180 27-208 (238)
35 cd00841 MPP_YfcE Escherichia c 98.2 2.2E-05 4.7E-10 62.0 11.5 36 12-57 25-60 (155)
36 cd07379 MPP_239FB Homo sapiens 98.2 1.6E-05 3.5E-10 61.5 10.2 101 10-184 18-120 (135)
37 PF06874 FBPase_2: Firmicute f 98.2 3.7E-05 8E-10 72.5 13.4 71 155-226 506-584 (640)
38 TIGR00040 yfcE phosphoesterase 98.1 0.00013 2.9E-09 57.9 13.7 37 11-56 28-64 (158)
39 cd07399 MPP_YvnB Bacillus subt 98.1 0.00015 3.2E-09 60.8 14.1 71 156-227 136-213 (214)
40 PRK05340 UDP-2,3-diacylglucosa 98.0 0.00025 5.5E-09 60.4 14.1 189 12-225 33-238 (241)
41 cd07394 MPP_Vps29 Homo sapiens 98.0 0.0005 1.1E-08 56.0 14.9 35 12-55 30-64 (178)
42 cd00838 MPP_superfamily metall 98.0 5.2E-05 1.1E-09 56.7 8.5 93 12-184 27-119 (131)
43 cd07400 MPP_YydB Bacillus subt 98.0 9.3E-05 2E-09 57.6 10.0 93 12-185 36-130 (144)
44 PF12850 Metallophos_2: Calcin 98.0 0.00012 2.5E-09 57.4 10.5 100 12-184 26-125 (156)
45 TIGR01854 lipid_A_lpxH UDP-2,3 97.8 9.5E-05 2.1E-09 62.7 8.4 59 155-218 172-230 (231)
46 cd07404 MPP_MS158 Microscilla 97.8 0.0002 4.4E-09 57.2 9.4 44 10-56 25-68 (166)
47 cd07395 MPP_CSTP1 Homo sapiens 97.6 0.0062 1.3E-07 52.3 16.4 28 157-184 195-222 (262)
48 COG2908 Uncharacterized protei 97.4 0.0004 8.7E-09 58.6 6.7 175 11-219 29-229 (237)
49 PRK11148 cyclic 3',5'-adenosin 97.4 0.033 7.2E-07 48.3 18.8 64 156-224 182-258 (275)
50 PRK09453 phosphodiesterase; Pr 97.4 0.00016 3.4E-09 59.0 3.5 42 12-57 28-77 (182)
51 cd07383 MPP_Dcr2 Saccharomyces 97.2 0.0023 5E-08 52.7 9.0 42 13-54 43-87 (199)
52 cd07403 MPP_TTHA0053 Thermus t 97.1 0.0042 9.2E-08 47.8 9.0 29 156-184 79-107 (129)
53 cd07402 MPP_GpdQ Enterobacter 97.1 0.013 2.9E-07 49.2 12.4 28 156-183 169-197 (240)
54 cd08166 MPP_Cdc1_like_1 unchar 97.0 0.00097 2.1E-08 55.1 4.3 44 13-56 44-93 (195)
55 PRK11340 phosphodiesterase Yae 96.9 0.00091 2E-08 58.1 3.6 43 12-56 81-125 (271)
56 cd07384 MPP_Cdc1_like Saccharo 96.8 0.0015 3.3E-08 52.8 4.2 45 13-57 47-101 (171)
57 cd08163 MPP_Cdc1 Saccharomyces 96.8 0.054 1.2E-06 46.7 13.8 25 154-178 202-226 (257)
58 cd07390 MPP_AQ1575 Aquifex aeo 96.8 0.0018 3.9E-08 52.0 4.4 43 11-58 42-84 (168)
59 cd08165 MPP_MPPE1 human MPPE1 96.7 0.0022 4.9E-08 51.0 4.1 45 13-57 40-90 (156)
60 cd07385 MPP_YkuE_C Bacillus su 96.7 0.0017 3.6E-08 54.2 3.5 43 13-57 34-77 (223)
61 COG1409 Icc Predicted phosphoh 96.7 0.13 2.9E-06 44.0 15.6 53 5-59 27-81 (301)
62 cd07391 MPP_PF1019 Pyrococcus 96.6 0.0019 4E-08 52.2 3.4 46 12-57 42-89 (172)
63 cd00840 MPP_Mre11_N Mre11 nucl 96.4 0.0031 6.7E-08 52.3 3.5 46 13-58 43-91 (223)
64 COG0622 Predicted phosphoester 96.4 0.15 3.2E-06 41.3 13.1 64 159-228 100-166 (172)
65 TIGR03729 acc_ester putative p 96.3 0.0031 6.6E-08 53.6 3.2 42 12-56 33-74 (239)
66 cd07388 MPP_Tt1561 Thermus the 96.3 0.0058 1.3E-07 51.7 4.6 44 12-56 32-75 (224)
67 cd07398 MPP_YbbF-LpxH Escheric 96.2 0.0074 1.6E-07 50.0 4.9 29 156-184 177-205 (217)
68 TIGR00619 sbcd exonuclease Sbc 96.0 0.01 2.2E-07 51.1 4.8 45 12-56 40-88 (253)
69 COG4186 Predicted phosphoester 95.9 0.014 3E-07 46.3 4.4 44 10-57 44-87 (186)
70 cd07393 MPP_DR1119 Deinococcus 95.7 0.014 3.1E-07 49.4 4.5 44 156-202 181-227 (232)
71 cd07396 MPP_Nbla03831 Homo sap 95.7 0.012 2.6E-07 50.8 3.9 45 13-57 42-87 (267)
72 cd07392 MPP_PAE1087 Pyrobaculu 95.7 0.013 2.7E-07 47.2 3.8 30 155-184 148-177 (188)
73 cd08164 MPP_Ted1 Saccharomyces 95.5 0.021 4.6E-07 47.1 4.5 44 13-56 46-111 (193)
74 COG1408 Predicted phosphohydro 95.4 0.019 4E-07 50.3 4.2 44 13-58 75-120 (284)
75 cd07401 MPP_TMEM62_N Homo sapi 95.4 0.017 3.7E-07 49.7 3.7 27 160-186 190-216 (256)
76 TIGR00024 SbcD_rel_arch putati 95.4 0.023 5E-07 48.1 4.4 41 13-57 60-103 (225)
77 PRK10966 exonuclease subunit S 95.3 0.018 4E-07 52.9 3.9 45 12-57 40-88 (407)
78 PHA02546 47 endonuclease subun 95.3 0.027 5.8E-07 50.6 4.7 45 13-57 41-90 (340)
79 PRK04036 DNA polymerase II sma 95.0 0.031 6.6E-07 52.9 4.5 43 13-57 286-344 (504)
80 COG1407 Predicted ICC-like pho 94.5 0.051 1.1E-06 46.1 4.1 42 13-57 65-111 (235)
81 cd07386 MPP_DNA_pol_II_small_a 94.0 0.042 9.1E-07 46.7 2.8 43 13-57 37-95 (243)
82 TIGR00583 mre11 DNA repair pro 93.9 0.065 1.4E-06 49.3 3.9 45 13-57 44-124 (405)
83 COG1311 HYS2 Archaeal DNA poly 93.8 1.9 4E-05 40.3 13.1 177 15-227 266-472 (481)
84 cd07387 MPP_PolD2_C PolD2 (DNA 93.2 3.7 7.9E-05 35.5 13.3 51 170-225 205-257 (257)
85 KOG3662 Cell division control 92.9 0.15 3.3E-06 46.6 4.5 43 13-55 95-143 (410)
86 cd00839 MPP_PAPs purple acid p 92.8 0.12 2.5E-06 45.0 3.6 29 156-184 181-209 (294)
87 COG0420 SbcD DNA repair exonuc 92.5 0.18 3.9E-06 45.9 4.6 46 13-58 42-90 (390)
88 cd00842 MPP_ASMase acid sphing 91.8 0.27 5.9E-06 42.9 4.7 48 11-58 68-124 (296)
89 COG3855 Fbp Uncharacterized pr 91.5 0.18 3.8E-06 46.6 3.2 41 13-58 192-232 (648)
90 KOG0918 Selenium-binding prote 90.6 0.011 2.5E-07 53.2 -5.2 193 13-218 49-251 (476)
91 COG2129 Predicted phosphoester 90.2 10 0.00022 32.0 14.7 184 11-225 30-224 (226)
92 cd07378 MPP_ACP5 Homo sapiens 90.0 0.27 5.9E-06 42.3 3.0 25 157-181 190-214 (277)
93 COG1768 Predicted phosphohydro 81.6 1.4 3E-05 36.1 2.7 44 10-57 42-87 (230)
94 KOG3325 Membrane coat complex 80.7 27 0.00058 27.8 9.5 27 159-185 98-124 (183)
95 PLN02533 probable purple acid 80.5 1.6 3.5E-05 40.5 3.2 25 158-182 312-336 (427)
96 KOG0376 Serine-threonine phosp 79.8 0.26 5.6E-06 45.7 -2.2 190 10-202 69-298 (476)
97 cd07406 MPP_CG11883_N Drosophi 76.2 2.6 5.7E-05 36.1 3.1 40 11-55 38-82 (257)
98 cd00845 MPP_UshA_N_like Escher 75.7 3.1 6.7E-05 35.2 3.4 40 11-55 37-81 (252)
99 KOG1432 Predicted DNA repair e 75.7 4 8.7E-05 36.6 4.1 44 13-57 102-148 (379)
100 KOG3339 Predicted glycosyltran 75.4 20 0.00043 29.5 7.6 85 13-103 40-140 (211)
101 cd00844 MPP_Dbr1_N Dbr1 RNA la 74.9 4 8.8E-05 35.3 3.9 27 154-180 202-228 (262)
102 COG3855 Fbp Uncharacterized pr 72.6 33 0.00071 32.3 9.1 60 156-215 514-581 (648)
103 PF13258 DUF4049: Domain of un 70.9 3.3 7.1E-05 35.2 2.3 87 14-108 87-187 (318)
104 cd07410 MPP_CpdB_N Escherichia 62.4 6.7 0.00015 33.8 2.7 20 161-180 210-230 (277)
105 cd07411 MPP_SoxB_N Thermus the 60.9 8.1 0.00017 33.1 2.9 38 13-56 53-95 (264)
106 PF14582 Metallophos_3: Metall 58.2 11 0.00023 32.2 3.0 55 154-215 192-246 (255)
107 cd07380 MPP_CWF19_N Schizosacc 53.7 20 0.00044 28.2 3.8 43 11-54 26-68 (150)
108 TIGR00282 metallophosphoestera 53.4 9.8 0.00021 33.0 2.1 39 14-56 2-41 (266)
109 PTZ00422 glideosome-associated 51.4 15 0.00032 33.8 3.0 44 13-56 59-109 (394)
110 cd07408 MPP_SA0022_N Staphyloc 48.6 16 0.00034 31.2 2.7 40 11-55 37-81 (257)
111 cd07412 MPP_YhcR_N Bacillus su 44.5 24 0.00053 30.7 3.3 40 11-55 42-87 (288)
112 PHA02131 hypothetical protein 43.2 24 0.00053 22.9 2.2 30 165-194 11-42 (70)
113 cd07382 MPP_DR1281 Deinococcus 43.0 22 0.00048 30.6 2.7 13 168-180 166-178 (255)
114 PF04042 DNA_pol_E_B: DNA poly 40.0 17 0.00037 29.7 1.5 47 12-58 32-93 (209)
115 KOG3947 Phosphoesterases [Gene 38.9 54 0.0012 28.7 4.4 46 8-57 79-127 (305)
116 PF02875 Mur_ligase_C: Mur lig 36.1 48 0.001 23.1 3.2 16 15-30 44-59 (91)
117 COG1692 Calcineurin-like phosp 35.9 48 0.001 28.5 3.6 36 14-51 2-38 (266)
118 KOG2863 RNA lariat debranching 35.2 23 0.00049 32.2 1.6 56 3-58 22-90 (456)
119 COG3433 Aryl carrier domain [S 33.0 24 0.00052 24.3 1.1 22 20-41 23-44 (74)
120 smart00854 PGA_cap Bacterial c 32.2 82 0.0018 26.4 4.5 33 166-201 203-235 (239)
121 cd07409 MPP_CD73_N CD73 ecto-5 31.7 53 0.0012 28.4 3.4 20 161-180 198-218 (281)
122 cd07407 MPP_YHR202W_N Saccharo 30.2 32 0.00069 30.0 1.7 39 13-56 52-97 (282)
123 PRK09419 bifunctional 2',3'-cy 29.8 45 0.00098 35.1 3.0 36 15-55 695-735 (1163)
124 PTZ00235 DNA polymerase epsilo 29.6 2.6E+02 0.0056 24.7 7.2 88 10-104 25-118 (291)
125 KOG3770 Acid sphingomyelinase 27.0 90 0.002 30.2 4.1 47 13-59 212-266 (577)
126 KOG2463 Predicted RNA-binding 26.8 4.4E+02 0.0095 23.8 8.0 78 150-229 206-290 (376)
127 cd07392 MPP_PAE1087 Pyrobaculu 26.7 86 0.0019 24.5 3.6 43 11-57 23-66 (188)
128 PF12641 Flavodoxin_3: Flavodo 26.2 1.2E+02 0.0027 24.0 4.3 29 11-39 38-66 (160)
129 KOG1378 Purple acid phosphatas 23.9 1.1E+02 0.0023 28.7 4.0 33 159-192 323-355 (452)
130 PF09637 Med18: Med18 protein; 23.7 1.3E+02 0.0028 25.7 4.3 71 156-231 139-213 (250)
131 cd08162 MPP_PhoA_N Synechococc 23.6 71 0.0015 28.3 2.7 40 11-55 38-90 (313)
132 COG1889 NOP1 Fibrillarin-like 23.6 1E+02 0.0023 25.9 3.4 48 4-52 69-132 (231)
133 cd00158 RHOD Rhodanese Homolog 22.7 1.6E+02 0.0036 19.4 4.0 40 7-52 45-84 (89)
134 cd00839 MPP_PAPs purple acid p 22.2 1.5E+02 0.0032 25.3 4.5 43 13-57 35-82 (294)
135 COG0737 UshA 5'-nucleotidase/2 22.1 73 0.0016 30.2 2.7 40 12-56 70-115 (517)
136 PF10083 DUF2321: Uncharacteri 21.7 28 0.0006 27.7 -0.3 45 156-207 23-76 (158)
137 PF05413 Peptidase_C34: Putati 21.6 43 0.00094 23.5 0.7 10 45-54 79-88 (92)
138 cd07381 MPP_CapA CapA and rela 20.2 1.4E+02 0.0031 24.8 3.8 34 164-200 203-236 (239)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-73 Score=466.14 Aligned_cols=244 Identities=61% Similarity=1.215 Sum_probs=233.6
Q ss_pred CccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhH
Q 025995 1 MKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRY 80 (245)
Q Consensus 1 l~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~ 80 (245)
|+||+..|.+|+++|+|||||||||..|+|++.+|++||++||+++.+||||||...+++.|||++||+++||+..+|+.
T Consensus 59 lelf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~ 138 (303)
T KOG0372|consen 59 LELFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRY 138 (303)
T ss_pred HHHHHhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHH
Q 025995 81 CTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVT 160 (245)
Q Consensus 81 ~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~ 160 (245)
+.+.|++||++|+|++++||||||++|+++++++|+.+.|..++|.+++++|+|||||.+.++|..+|||+|+.||++++
T Consensus 139 c~eiFdyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv 218 (303)
T KOG0372|consen 139 CTEIFDYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVV 218 (303)
T ss_pred HHHHHHhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEeccccCcC-CCCCCC
Q 025995 161 SEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQ-MRGPRT 239 (245)
Q Consensus 161 ~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~~~~~~-~~~~~~ 239 (245)
++|++.||+.+|+|+||.+.+||+..| +++|+||||||||||+++|.||||+|+++....|.+|++.|..+. ...-+.
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F-~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~~~~~~~~~kk~ 297 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHF-DEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAPQESRGIPAKKP 297 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhc-CCceEEEecCCchhhhcCChHHheeeccccCcceEeeecchhhhcCCcccCc
Confidence 999999999999999999999999999 999999999999999999999999999999999999999998744 222355
Q ss_pred CCCCCC
Q 025995 240 GVPYFL 245 (245)
Q Consensus 240 ~~~~~~ 245 (245)
+.+||+
T Consensus 298 ~~~yFl 303 (303)
T KOG0372|consen 298 IADYFL 303 (303)
T ss_pred chhhcC
Confidence 557775
No 2
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-67 Score=424.49 Aligned_cols=244 Identities=80% Similarity=1.435 Sum_probs=237.7
Q ss_pred CccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhH
Q 025995 1 MKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRY 80 (245)
Q Consensus 1 l~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~ 80 (245)
++||+..|.-|++.|||+|||||||-.|+|++.+++.||.+||.++.+||||||.+-+.+.|||++||..+||....|+.
T Consensus 62 ~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wky 141 (306)
T KOG0373|consen 62 LELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKY 141 (306)
T ss_pred HHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHH
Q 025995 81 CTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVT 160 (245)
Q Consensus 81 ~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~ 160 (245)
+.+.|+.|+++|+|+++++|||||+||+..++++|+-+.|..++|.++.++|++||||++.+.|..++||+|++||+..+
T Consensus 142 cckVFD~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt 221 (306)
T KOG0373|consen 142 CCKVFDFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVT 221 (306)
T ss_pred HHHHHhhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCceEEEeccceeecceEEEecCCc-eEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEeccccCcCCCCCCC
Q 025995 161 SEFNHINNLDLVCRAHQLVQEGLKYMFQDKG-LVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRT 239 (245)
Q Consensus 161 ~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~-vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
.+|+..|++++|.|+||.+.+||++.| ++| ++|||||||||++|+|.|+||.++++++.++++|.+.|..+++..+++
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF-~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~~~~~p~r~ 300 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMF-DEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDNSRVIPPRT 300 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhcc-CCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCccccCCCCC
Confidence 999999999999999999999999999 555 999999999999999999999999999999999999999988888899
Q ss_pred CCCCCC
Q 025995 240 GVPYFL 245 (245)
Q Consensus 240 ~~~~~~ 245 (245)
..+||+
T Consensus 301 ~~pYFl 306 (306)
T KOG0373|consen 301 RAPYFL 306 (306)
T ss_pred CCCCcC
Confidence 999986
No 3
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.1e-62 Score=429.99 Aligned_cols=243 Identities=66% Similarity=1.226 Sum_probs=224.2
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHH
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYC 81 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~ 81 (245)
++|+..|.+++++|+|||||||||++|+|++.+++++|..+|.++++||||||.+.++..++|..|+..+|+...+|+.+
T Consensus 60 ~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~ 139 (303)
T PTZ00239 60 ALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLF 139 (303)
T ss_pred HHHHhcCCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred HHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHHH
Q 025995 82 TDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTS 161 (245)
Q Consensus 82 ~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~ 161 (245)
.++|++||++++++++++|||||++|...++++|+.+.|+.+.|.++++.++|||||.+..+|.+++||.|+.||.++++
T Consensus 140 ~~~f~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~ 219 (303)
T PTZ00239 140 MDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTK 219 (303)
T ss_pred HHHHHhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999988889999999999998888999999999999999999
Q ss_pred HhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEeccccCcCCCCCCCCC
Q 025995 162 EFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGV 241 (245)
Q Consensus 162 ~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
+||++||+++||||||++++||+..+.+++|+||||||+||+..+|+||+|.++++.+++|++|+|.+.+.....++..+
T Consensus 220 ~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (303)
T PTZ00239 220 EFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPESAKSINPKNVL 299 (303)
T ss_pred HHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCcccccCcccCCC
Confidence 99999999999999999999999877355699999999999999999999999999999999999998874322222223
Q ss_pred CCC
Q 025995 242 PYF 244 (245)
Q Consensus 242 ~~~ 244 (245)
.||
T Consensus 300 ~~~ 302 (303)
T PTZ00239 300 PYF 302 (303)
T ss_pred CCC
Confidence 555
No 4
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.7e-62 Score=426.32 Aligned_cols=227 Identities=68% Similarity=1.297 Sum_probs=218.2
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHH
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYC 81 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~ 81 (245)
++|+..|+|+.++|||||||||||++|+|++.++++||..+|.++++||||||...++..++|..|+..+|+...+|..+
T Consensus 59 ~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~ 138 (285)
T cd07415 59 ELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYC 138 (285)
T ss_pred HHHHHcCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHH
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred HHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHHH
Q 025995 82 TDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTS 161 (245)
Q Consensus 82 ~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~ 161 (245)
.++|++||++|+++++++|||||++|...++++|+.+.|+.+.+.++.+.+++||||....+|.+++||.|+.||.++++
T Consensus 139 ~~~f~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~ 218 (285)
T cd07415 139 TDLFDYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVE 218 (285)
T ss_pred HHHHHHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999888888999999999998789999999999999999999
Q ss_pred HhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEeccc
Q 025995 162 EFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETE 229 (245)
Q Consensus 162 ~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~~ 229 (245)
+||+++|+++||||||++++||++.+ +++|+||||||+||+..+|+||+|.|+++++++|++|+|++
T Consensus 219 ~Fl~~n~l~~iiR~He~~~~G~~~~~-~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~~ 285 (285)
T cd07415 219 EFNHNNGLTLICRAHQLVMEGYQWMF-DDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAAP 285 (285)
T ss_pred HHHHHCCCeEEEEcCccccceEEEec-CCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccCC
Confidence 99999999999999999999999988 99999999999999999999999999999999999999875
No 5
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=3.5e-62 Score=428.17 Aligned_cols=241 Identities=42% Similarity=0.900 Sum_probs=223.5
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHH
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYC 81 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~ 81 (245)
++|+..|+|+.++|||||||||||++|+|++.+++++|..+|.++++||||||...++..++|..|+..+| ...+|..+
T Consensus 76 ~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y-~~~l~~~~ 154 (320)
T PTZ00480 76 RLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-TIKLWKTF 154 (320)
T ss_pred HHHHhcCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhc-CHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999 46899999
Q ss_pred HHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCC-CCCCccCCCCceeeeChHHH
Q 025995 82 TDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPED-IETWAVSPRGAGWLFGSRVT 160 (245)
Q Consensus 82 ~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~-~~~~~~~~rg~~~~fg~~~~ 160 (245)
.++|++||++|+++++++||||||+|...++++|+.+.|+.+.+..+++.++|||||.. ..+|.+++||.|++||.+++
T Consensus 155 ~~~F~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~ 234 (320)
T PTZ00480 155 TDCFNCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIV 234 (320)
T ss_pred HHHHHhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHH
Confidence 99999999999999999999999999999999999999999988889999999999984 67899999999999999999
Q ss_pred HHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEeccccCcC-CCCCCC
Q 025995 161 SEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQ-MRGPRT 239 (245)
Q Consensus 161 ~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~~~~~~-~~~~~~ 239 (245)
++||++||+++||||||++++||++.+ +++|+||||||+||+.++|+||+|.|++++.++|++|+|.+.+.. .+..++
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~-~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~~~~~~~~~~ 313 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFS-KRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQGQGASQQNKP 313 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeC-CCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCcccccccccccC
Confidence 999999999999999999999999977 999999999999999999999999999999999999998887733 333344
Q ss_pred CCCCC
Q 025995 240 GVPYF 244 (245)
Q Consensus 240 ~~~~~ 244 (245)
+-..|
T Consensus 314 ~~~~~ 318 (320)
T PTZ00480 314 GSAKF 318 (320)
T ss_pred CCCCC
Confidence 43433
No 6
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.6e-62 Score=430.29 Aligned_cols=227 Identities=44% Similarity=0.938 Sum_probs=219.2
Q ss_pred CccccccC-CCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhh
Q 025995 1 MKLFQTGG-HVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWR 79 (245)
Q Consensus 1 l~l~~~~g-~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~ 79 (245)
|++|+..| +||+++|||||||||||++|+|++.+|+++|+.||+++++||||||.+.++..|||++||.++|+...+|.
T Consensus 75 lrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~ 154 (331)
T KOG0374|consen 75 LRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWK 154 (331)
T ss_pred HHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHH
Confidence 47889999 99999999999999999999999999999999999999999999999999999999999999996679999
Q ss_pred HHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCC-CCCCccCCCCceeeeChH
Q 025995 80 YCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPED-IETWAVSPRGAGWLFGSR 158 (245)
Q Consensus 80 ~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~-~~~~~~~~rg~~~~fg~~ 158 (245)
.+++.|+.||++|+|+++++|+|||++|...++++|+.|.||.+.++.+++.|++||||.. ..+|.++.||.++.||++
T Consensus 155 ~F~~~f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~ 234 (331)
T KOG0374|consen 155 AFNDAFNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPA 234 (331)
T ss_pred HHHHHHhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHH
Confidence 9999999999999999999999999999999999999999999999999999999999984 689999999999999999
Q ss_pred HHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEecc
Q 025995 159 VTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTET 228 (245)
Q Consensus 159 ~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~ 228 (245)
++++||+++++++||||||++++||+++. +++++||||||+||+.+.|.||+|.+++++.++|+++.|.
T Consensus 235 ~v~~f~~~~~ldlivRaHqvv~dGyeffa-~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~ 303 (331)
T KOG0374|consen 235 VVEDFCKKLDLDLIVRAHQVVEDGYEFFA-GRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPE 303 (331)
T ss_pred HHHHHHHHhCcceEEEcCccccccceEec-CceEEEEecCchhccccCCceEEEEECCCCeEEEEEeccc
Confidence 99999999999999999999999999854 9999999999999999999999999999999999999995
No 7
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1.5e-61 Score=424.69 Aligned_cols=224 Identities=33% Similarity=0.578 Sum_probs=202.6
Q ss_pred CccccccCCCC-CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCC--chh
Q 025995 1 MKLFQTGGHVP-ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGN--ANA 77 (245)
Q Consensus 1 l~l~~~~g~~~-~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~--~~~ 77 (245)
+++|++.|+|+ +++|||||||||||++|+||+.+|++||+.+|+++++||||||.+.++..+||.+|+..+|+. ..+
T Consensus 67 ~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l 146 (321)
T cd07420 67 FLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKI 146 (321)
T ss_pred HHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHH
Confidence 36788899985 567999999999999999999999999999999999999999999999999999999999974 689
Q ss_pred hhHHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhccc-----CCC----------------------CCCc
Q 025995 78 WRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCE-----IPH----------------------EGPF 130 (245)
Q Consensus 78 ~~~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~-----~~~----------------------~~~~ 130 (245)
|..+.++|++||+||+++++++||||||++ ..++++|+++.|+.. +|. .+.+
T Consensus 147 ~~~~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (321)
T cd07420 147 LRLLEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQI 225 (321)
T ss_pred HHHHHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchh
Confidence 999999999999999999999999999997 468999999987421 111 0356
Q ss_pred cccccCCCCCCCC-CccCCCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeE
Q 025995 131 CDLMWSDPEDIET-WAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVA 209 (245)
Q Consensus 131 ~~llWsdp~~~~~-~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~ 209 (245)
.++|||||.+..+ |.+++||.|+.||.+++++||++|++++||||||++++||++.+ +++|+||||||+||+.++|+|
T Consensus 226 ~dlLWSDP~~~~~~~~~~~RG~g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~-~~~~iTvFSa~nY~~~~~N~g 304 (321)
T cd07420 226 LDILWSDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCH-NNKVITIFSASNYYEEGSNRG 304 (321)
T ss_pred heeeecCCccCCCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEec-CCeEEEEecCCccCCCCCccE
Confidence 7999999996544 66778999999999999999999999999999999999999988 999999999999999999999
Q ss_pred EEEEEcCCCceEEEEEe
Q 025995 210 SILSFNENMEREVKFFT 226 (245)
Q Consensus 210 avl~i~~~~~~~~~~~~ 226 (245)
|+|.|+++++++|++|.
T Consensus 305 avl~i~~~~~~~f~~~~ 321 (321)
T cd07420 305 AYIKLGPDLTPHFVQYQ 321 (321)
T ss_pred EEEEECCCCceeEEEeC
Confidence 99999999999999884
No 8
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.4e-60 Score=415.46 Aligned_cols=224 Identities=38% Similarity=0.854 Sum_probs=213.5
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHH
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYC 81 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~ 81 (245)
++|++.++|+.++++|||||||||++|+||+.+++++|..+|.++++||||||.+.++..++|..++..+| ...+|..+
T Consensus 69 ~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y-~~~l~~~~ 147 (294)
T PTZ00244 69 RIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRY-NIKLFKAF 147 (294)
T ss_pred HHHHHcCCCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHh-hHHHHHHH
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999 46899999
Q ss_pred HHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCC-CCCCccCCCCceeeeChHHH
Q 025995 82 TDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPED-IETWAVSPRGAGWLFGSRVT 160 (245)
Q Consensus 82 ~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~-~~~~~~~~rg~~~~fg~~~~ 160 (245)
.++|++||++++++++++|||||++|...++++++.+.|+.+.+..+.+.+++||||.. ..+|.+++||.++.||.+++
T Consensus 148 ~~~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~ 227 (294)
T PTZ00244 148 TDVFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIV 227 (294)
T ss_pred HHHHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHH
Confidence 99999999999999999999999999999999999999999888888999999999985 67899999999999999999
Q ss_pred HHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEec
Q 025995 161 SEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTE 227 (245)
Q Consensus 161 ~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~ 227 (245)
++||+++|+++||||||++++||++.+ +++|+||||||+||+..+|+||+|.|+++.+++|++|.+
T Consensus 228 ~~Fl~~n~l~~iiR~Hq~~~~G~~~~~-~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~~ 293 (294)
T PTZ00244 228 NDFLDMVDMDLIVRAHQVMERGYGFFA-SRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIPA 293 (294)
T ss_pred HHHHHHcCCcEEEEcCccccCceEEcC-CCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEeec
Confidence 999999999999999999999999977 999999999999999999999999999999999998865
No 9
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.6e-60 Score=418.79 Aligned_cols=228 Identities=39% Similarity=0.701 Sum_probs=213.5
Q ss_pred ccccccCCCCC-CcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhH
Q 025995 2 KLFQTGGHVPE-TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRY 80 (245)
Q Consensus 2 ~l~~~~g~~~~-~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~ 80 (245)
++|++.|+|+. ++|||||||||||++|+||+.+++++|..+|+++++||||||.+.++..++|..|+..+| ...+|..
T Consensus 77 ~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~-~~~l~~~ 155 (316)
T cd07417 77 NIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKY-NEQMFDL 155 (316)
T ss_pred HHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcc-cHHHHHH
Confidence 57888898765 569999999999999999999999999999999999999999999999999999999998 4679999
Q ss_pred HHHHHhhcccceeEcCeEEEEeCCCC-CCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHH
Q 025995 81 CTDVFDYLTLSAIIDGTVLCVHGGLS-PDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRV 159 (245)
Q Consensus 81 ~~~~~~~LPl~~~i~~~~l~vHgGi~-~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~ 159 (245)
+.++|++||++++++++++|||||++ +...++++++++.|+.+.+.++.+.++|||||.+..+|.+++||.|+.||.++
T Consensus 156 ~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~ 235 (316)
T cd07417 156 FSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDV 235 (316)
T ss_pred HHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHH
Confidence 99999999999999999999999994 56678999999999988888888999999999987889999999999999999
Q ss_pred HHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcC-CCceEEEEEeccccC
Q 025995 160 TSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNE-NMEREVKFFTETEEN 231 (245)
Q Consensus 160 ~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~-~~~~~~~~~~~~~~~ 231 (245)
+++||++||+++||||||++++||+..+ +++|+||||||+||+.++|+||+|.|++ +++++|++|++.++.
T Consensus 236 ~~~Fl~~n~l~~iiR~He~~~~G~~~~~-~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 236 TKRFLEENNLEYIIRSHEVKDEGYEVEH-DGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred HHHHHHHcCCcEEEECCcccceeEEEec-CCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 9999999999999999999999999988 9999999999999999999999999999 899999999988755
No 10
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.5e-60 Score=415.62 Aligned_cols=225 Identities=45% Similarity=0.969 Sum_probs=214.4
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHH
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYC 81 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~ 81 (245)
++|+..|+|+.++|||||||||||++|+|++.+++++|..+|.++++||||||.+.++..++|..|+..+| ...+|..+
T Consensus 67 ~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y-~~~l~~~~ 145 (293)
T cd07414 67 RLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTF 145 (293)
T ss_pred HHHHhcCCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhh-hHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999998 56899999
Q ss_pred HHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCC-CCCCCccCCCCceeeeChHHH
Q 025995 82 TDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPE-DIETWAVSPRGAGWLFGSRVT 160 (245)
Q Consensus 82 ~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~-~~~~~~~~~rg~~~~fg~~~~ 160 (245)
.++|++||++++++++++|||||++|...++++|+.+.|+.+.+..+.+.+++||||. ...+|.+++||.++.||.+++
T Consensus 146 ~~~f~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~ 225 (293)
T cd07414 146 TDCFNCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVV 225 (293)
T ss_pred HHHHHHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHH
Confidence 9999999999999999999999999999999999999999988888889999999998 467889999999999999999
Q ss_pred HHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEecc
Q 025995 161 SEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTET 228 (245)
Q Consensus 161 ~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~ 228 (245)
++||+++|+++||||||++++||++.+ +++|+||||||+||+.++|+||+|.|++++.++|++|+|.
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~-~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~~ 292 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFA-KRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 292 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeC-CCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecCC
Confidence 999999999999999999999999977 9999999999999999999999999999999999999864
No 11
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=2.5e-59 Score=404.78 Aligned_cols=225 Identities=47% Similarity=0.920 Sum_probs=214.1
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHH
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYC 81 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~ 81 (245)
++|+..|.++.++|||||||||||++|+|++.+++++|..+|.++++||||||.+.++..++|..|+..+|+ .++|+.+
T Consensus 45 ~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~-~~l~~~~ 123 (271)
T smart00156 45 RLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG-EEIYEKF 123 (271)
T ss_pred HHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC-HHHHHHH
Confidence 477888999999999999999999999999999999999999999999999999999989999999999994 6899999
Q ss_pred HHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCC-CCCCCccCCCCceeeeChHHH
Q 025995 82 TDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPE-DIETWAVSPRGAGWLFGSRVT 160 (245)
Q Consensus 82 ~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~-~~~~~~~~~rg~~~~fg~~~~ 160 (245)
.++|++||++++++++++|||||++|...++++|+.+.|+.+.+.++.+.+++||||. ...+|.+++||.++.||.+++
T Consensus 124 ~~~f~~LPl~aii~~~~~~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~ 203 (271)
T smart00156 124 QEAFSWLPLAALIDNKILCMHGGLSPDLTTLDDIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAV 203 (271)
T ss_pred HHHHhhChhheEEcCeEEEEecCCCCccCCHHHHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHH
Confidence 9999999999999999999999999999999999999999888888899999999996 567889999999999999999
Q ss_pred HHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEecc
Q 025995 161 SEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTET 228 (245)
Q Consensus 161 ~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~ 228 (245)
++||+++|+++||||||++++||+..+ +++|+||||||+||+.++|+||+|.|+++++++|.+|+|.
T Consensus 204 ~~Fl~~n~l~~iiR~He~~~~G~~~~~-~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~~ 270 (271)
T smart00156 204 DEFLKKNNLKLIIRAHQVVDDGYEFFH-DRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKPG 270 (271)
T ss_pred HHHHHHCCCeEEEecCcccCCcEEEec-CCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecCC
Confidence 999999999999999999999999988 9999999999999998899999999999999999999764
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=4e-59 Score=408.98 Aligned_cols=227 Identities=41% Similarity=0.767 Sum_probs=210.4
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHH
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYC 81 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~ 81 (245)
++|+..|.|+.++|||||||||||++|+||+.+++++|..+|+++++||||||.+.++..++|..|+..+| ..++|..+
T Consensus 60 ~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y-~~~l~~~~ 138 (305)
T cd07416 60 KLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDAC 138 (305)
T ss_pred HHHHhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhc-cHHHHHHH
Confidence 47888899999999999999999999999999999999999999999999999998988899999999888 56889999
Q ss_pred HHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCC-------CCcc-CCCCcee
Q 025995 82 TDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIE-------TWAV-SPRGAGW 153 (245)
Q Consensus 82 ~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~-------~~~~-~~rg~~~ 153 (245)
.++|++||++++++++++|||||++|...++++|+++.|+.+.+..+.+.++|||||.... +|.+ ++||.++
T Consensus 139 ~~~f~~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~ 218 (305)
T cd07416 139 MEAFDCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSY 218 (305)
T ss_pred HHHHhhccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCce
Confidence 9999999999999999999999999999999999999999888888889999999997422 3655 4899999
Q ss_pred eeChHHHHHhhhhCCceEEEeccceeecceEEEecCC------ceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEec
Q 025995 154 LFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDK------GLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTE 227 (245)
Q Consensus 154 ~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~------~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~ 227 (245)
.||.+++++||++||+++||||||++++||++.+ ++ +|+||||||+||+.++|+||+|.|+++. ++|++|.+
T Consensus 219 ~fG~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~-~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~ 296 (305)
T cd07416 219 FYSYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYR-KSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNC 296 (305)
T ss_pred ecCHHHHHHHHHHcCCeEEEEeccccccceEEec-CCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecC
Confidence 9999999999999999999999999999999976 65 9999999999999999999999999875 79999999
Q ss_pred cccC
Q 025995 228 TEEN 231 (245)
Q Consensus 228 ~~~~ 231 (245)
+|+-
T Consensus 297 ~~~~ 300 (305)
T cd07416 297 SPHP 300 (305)
T ss_pred CCCC
Confidence 9863
No 13
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.7e-56 Score=393.90 Aligned_cols=225 Identities=36% Similarity=0.723 Sum_probs=205.3
Q ss_pred ccccccCCCCC--------CcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhC
Q 025995 2 KLFQTGGHVPE--------TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYG 73 (245)
Q Consensus 2 ~l~~~~g~~~~--------~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~ 73 (245)
++|+..|+|+. .+||||||||||||+|+||+.++++|+..+|.++++||||||.+.++..++|..++..+++
T Consensus 65 ~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~ 144 (311)
T cd07419 65 RLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLG 144 (311)
T ss_pred HHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcC
Confidence 47778888764 5799999999999999999999999999999999999999999999999999999988886
Q ss_pred C-----chhhhHHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcc-cCCCCCCccccccCCCCC---CCCC
Q 025995 74 N-----ANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNC-EIPHEGPFCDLMWSDPED---IETW 144 (245)
Q Consensus 74 ~-----~~~~~~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~-~~~~~~~~~~llWsdp~~---~~~~ 144 (245)
. ..+|..+.++|++||++++++++++|||||++|...++++|+.+.|+. ..+..+.+.+++||||.. ..+|
T Consensus 145 ~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~ 224 (311)
T cd07419 145 EDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGL 224 (311)
T ss_pred ccchhhHHHHHHHHHHHHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCcccccccccc
Confidence 5 368999999999999999999999999999999999999999999987 345567789999999984 3456
Q ss_pred ccCC---CCce--eeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCc
Q 025995 145 AVSP---RGAG--WLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENME 219 (245)
Q Consensus 145 ~~~~---rg~~--~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~ 219 (245)
.+++ ||.| +.||.+++++||+++|+++||||||++++||+..+ +++|+||||||+||+.++|+||++.|+++..
T Consensus 225 ~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~-~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~ 303 (311)
T cd07419 225 RPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGFERFA-QGKLITLFSATNYCGTAGNAGAILVLGRDLT 303 (311)
T ss_pred ccCCCCCCCCCcceeECHHHHHHHHHHCCCeEEEEechhhhCCeEEeC-CCeEEEEecCCcccCCCCceEEEEEECCCCc
Confidence 5555 8888 69999999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred eEEEEEec
Q 025995 220 REVKFFTE 227 (245)
Q Consensus 220 ~~~~~~~~ 227 (245)
+++++++|
T Consensus 304 ~~~~~~~~ 311 (311)
T cd07419 304 IIPKLIHP 311 (311)
T ss_pred EeEEEeCC
Confidence 99999886
No 14
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-58 Score=378.50 Aligned_cols=244 Identities=55% Similarity=1.065 Sum_probs=235.0
Q ss_pred CccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhH
Q 025995 1 MKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRY 80 (245)
Q Consensus 1 l~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~ 80 (245)
|+||+..|..|+..|+|+|||||||++|.|++.+|.++|+.||++|.+||||||...+.+.|+|++||+++||...+|..
T Consensus 76 ~ELfkiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~ 155 (319)
T KOG0371|consen 76 IELFKIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKY 155 (319)
T ss_pred HHHHHccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHH
Q 025995 81 CTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVT 160 (245)
Q Consensus 81 ~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~ 160 (245)
+.+.|+++|+.+.|+++++|.|||++|....++.++.+.|..++|.+++++|+|||||.+..+|..++||+++-||.+..
T Consensus 156 Ftdlfdy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~ 235 (319)
T KOG0371|consen 156 FTDLFDYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIS 235 (319)
T ss_pred hhhhhhccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEeccccCcCCCCCCCC
Q 025995 161 SEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTG 240 (245)
Q Consensus 161 ~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
++|-.++|+++|-|+||.+.+||.... ...++|||||||||+.++|.+|+|.++++....|.||+|+|..-.-...+..
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~-~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k~e~~vtr~t 314 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYH-LWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRKVEPDVTRKT 314 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceee-ecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccccccccccCC
Confidence 999999999999999999999999988 8888899999999999999999999999999999999999877555667888
Q ss_pred CCCCC
Q 025995 241 VPYFL 245 (245)
Q Consensus 241 ~~~~~ 245 (245)
|+|||
T Consensus 315 pDYfL 319 (319)
T KOG0371|consen 315 PDYFL 319 (319)
T ss_pred CCCcC
Confidence 89986
No 15
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=3.2e-56 Score=396.57 Aligned_cols=227 Identities=36% Similarity=0.607 Sum_probs=202.3
Q ss_pred ccccccCCCCC-CcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCC--chhh
Q 025995 2 KLFQTGGHVPE-TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGN--ANAW 78 (245)
Q Consensus 2 ~l~~~~g~~~~-~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~--~~~~ 78 (245)
++|+..|+++. ++|||||||||||++|+||+.+++++|..+|.++++||||||.+.++..++|..|+..+|+. ..+|
T Consensus 83 ~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~ 162 (377)
T cd07418 83 FLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVY 162 (377)
T ss_pred HHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHH
Confidence 57888898865 45999999999999999999999999999999999999999999999999999999999975 4799
Q ss_pred hHHHHHHhhcccceeEcCeEEEEeCCCCC---------------------------CCCCHHHHHHhhhc-ccCCCCC--
Q 025995 79 RYCTDVFDYLTLSAIIDGTVLCVHGGLSP---------------------------DIRTIDQIRVIERN-CEIPHEG-- 128 (245)
Q Consensus 79 ~~~~~~~~~LPl~~~i~~~~l~vHgGi~~---------------------------~~~~l~~i~~i~r~-~~~~~~~-- 128 (245)
+.+.++|++||++++++++++||||||++ ...++++|++++|+ .+++..+
T Consensus 163 ~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~ 242 (377)
T cd07418 163 RKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSN 242 (377)
T ss_pred HHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCcc
Confidence 99999999999999999999999999943 44588999999886 4555444
Q ss_pred -CccccccCCCCCCCCCccC-CCCceeeeChHHHHHhhhhCCceEEEeccce------------eecceEEEecC---Cc
Q 025995 129 -PFCDLMWSDPEDIETWAVS-PRGAGWLFGSRVTSEFNHINNLDLVCRAHQL------------VQEGLKYMFQD---KG 191 (245)
Q Consensus 129 -~~~~llWsdp~~~~~~~~~-~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~------------~~~G~~~~~~~---~~ 191 (245)
++.|+|||||....+|.++ +||.|+.||.+++++||++|++++||||||+ +++||++.+ + ++
T Consensus 243 ~i~~dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~-~~~~~~ 321 (377)
T cd07418 243 LIPGDVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDH-DVESGK 321 (377)
T ss_pred ccceeeEeeCCccCCCCCccCCCCCccccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEec-cCCCCc
Confidence 3689999999977777665 7999999999999999999999999999996 679999977 6 99
Q ss_pred eEEEecCCCcC------CcCCCeEEEEEEcCCC--ceEEEEEeccc
Q 025995 192 LVTVWSAPNYC------YRCGNVASILSFNENM--EREVKFFTETE 229 (245)
Q Consensus 192 vitifSa~~y~------~~~~n~~avl~i~~~~--~~~~~~~~~~~ 229 (245)
|+||||||+|| +.++|+||++.++.+. +++|.+|+++.
T Consensus 322 liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~~ 367 (377)
T cd07418 322 LITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAVK 367 (377)
T ss_pred EEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeeccC
Confidence 99999999999 5789999999997654 69999999993
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=7.7e-56 Score=380.90 Aligned_cols=229 Identities=41% Similarity=0.754 Sum_probs=213.9
Q ss_pred CccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhH
Q 025995 1 MKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRY 80 (245)
Q Consensus 1 l~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~ 80 (245)
|+||+..|.|.+++|+|||||||||..|+||+.+|.+||+.||..+++||||||.+.+...+.|..||..+| +.+++++
T Consensus 104 mKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKY-se~vYda 182 (517)
T KOG0375|consen 104 MKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDA 182 (517)
T ss_pred HHHHHccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhc-cHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred HHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCC-------CCCC-ccCCCCce
Q 025995 81 CTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPED-------IETW-AVSPRGAG 152 (245)
Q Consensus 81 ~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~-------~~~~-~~~~rg~~ 152 (245)
+.+.|+.||+||+.++.++|||||++|...++++|+.+.|..++|..++++|+|||||.+ .+-| -++.||.+
T Consensus 183 CmesFd~LPLAAlmNqQflCVHGGlSPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS 262 (517)
T KOG0375|consen 183 CMESFDCLPLAALMNQQFLCVHGGLSPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS 262 (517)
T ss_pred HHHHhccchHHHHhcCceEEecCCCCcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999972 1223 34579999
Q ss_pred eeeChHHHHHhhhhCCceEEEeccceeecceEEEec-----CCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEEec
Q 025995 153 WLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQ-----DKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTE 227 (245)
Q Consensus 153 ~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~-----~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~~~ 227 (245)
+.|.-.++.+||+.||+-.|||+||.|+.||..+.. -..+|||||||||.+.++|+||||+.. ++.+.++||.+
T Consensus 263 yfysy~A~C~FLq~nnLLSIiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYE-nNVMNIRQFnc 341 (517)
T KOG0375|consen 263 YFYSYPAVCEFLQNNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYE-NNVMNIRQFNC 341 (517)
T ss_pred ceechHHHHHHHHhCCchhhhhhhhhhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhh-cccceeeccCC
Confidence 999999999999999999999999999999998551 247899999999999999999999987 77899999999
Q ss_pred cccC
Q 025995 228 TEEN 231 (245)
Q Consensus 228 ~~~~ 231 (245)
+|+-
T Consensus 342 SPHP 345 (517)
T KOG0375|consen 342 SPHP 345 (517)
T ss_pred CCCC
Confidence 9975
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-47 Score=335.76 Aligned_cols=229 Identities=33% Similarity=0.611 Sum_probs=203.4
Q ss_pred cccccCCCCCCc-EEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCC--chhhh
Q 025995 3 LFQTGGHVPETN-YIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGN--ANAWR 79 (245)
Q Consensus 3 l~~~~g~~~~~~-~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~--~~~~~ 79 (245)
+|-+.|+|..++ |||.||+||||.+|+|||..|+++-..||..+++-|||||..+++-+|||..|...+|.. ..+..
T Consensus 183 I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~k~Ilr 262 (631)
T KOG0377|consen 183 ILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHGKRILR 262 (631)
T ss_pred EEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcccHHHH
Confidence 678899997655 999999999999999999999999999999999999999999999999999999999853 57788
Q ss_pred HHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhccc-----CCC------C-----------CCccccccCC
Q 025995 80 YCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCE-----IPH------E-----------GPFCDLMWSD 137 (245)
Q Consensus 80 ~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~-----~~~------~-----------~~~~~llWsd 137 (245)
.+.+++.+||++.+++.++++||||++... +++-+.+|.|... +|. + ..+.|+||||
T Consensus 263 ~leevy~WLPi~tiid~~ilvvHGGiSd~T-dl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSD 341 (631)
T KOG0377|consen 263 FLEEVYRWLPIGTIIDSRILVVHGGISDST-DLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSD 341 (631)
T ss_pred HHHHHHHhcchhhhcccceEEEecCcccch-hHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcC
Confidence 899999999999999999999999998754 7787877776421 111 0 1245899999
Q ss_pred CCC-CCCCccCCCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcC
Q 025995 138 PED-IETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNE 216 (245)
Q Consensus 138 p~~-~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~ 216 (245)
|.. ...|.+.-||.|++||.+.+++||++++++++||+||+-++||++.+ +++|+|||||+||....+|+||.+++..
T Consensus 342 P~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~H-d~kvlTiFSASNYYe~GSNrGAYikl~~ 420 (631)
T KOG0377|consen 342 PQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCH-DNKVLTIFSASNYYEIGSNRGAYIKLGN 420 (631)
T ss_pred cccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeee-CCeEEEEEeccchheecCCCceEEEeCC
Confidence 995 44567778999999999999999999999999999999999999988 9999999999999888899999999999
Q ss_pred CCceEEEEEeccccCcC
Q 025995 217 NMEREVKFFTETEENNQ 233 (245)
Q Consensus 217 ~~~~~~~~~~~~~~~~~ 233 (245)
...+.|+||.++..++.
T Consensus 421 ~~~PhfvQY~a~k~t~~ 437 (631)
T KOG0377|consen 421 QLTPHFVQYQAAKQTKR 437 (631)
T ss_pred CCCchHHHHHhhhhhhh
Confidence 99999999998766543
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=314.23 Aligned_cols=236 Identities=38% Similarity=0.680 Sum_probs=217.3
Q ss_pred CccccccCCCCCC-cEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhh
Q 025995 1 MKLFQTGGHVPET-NYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWR 79 (245)
Q Consensus 1 l~l~~~~g~~~~~-~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~ 79 (245)
+++|+..|.|+.. .++|-||+||||..|.|++..+.+.|+.+|+++|++|||||...++..|+|..++..+| .++.+.
T Consensus 230 ~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~ky-te~~~~ 308 (476)
T KOG0376|consen 230 LNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKY-TEEMFN 308 (476)
T ss_pred hhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhh-HHHHHH
Confidence 4688899998654 59999999999999999999999999999999999999999999999999999999998 455666
Q ss_pred HHHHHHhhcccceeEcCeEEEEeCCCCC-CCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChH
Q 025995 80 YCTDVFDYLTLSAIIDGTVLCVHGGLSP-DIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSR 158 (245)
Q Consensus 80 ~~~~~~~~LPl~~~i~~~~l~vHgGi~~-~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~ 158 (245)
.+.+.|.+||++-.++++++.+|||++. .-..++++++|.|+...+..+..++++||||....+..++.||.+..||.+
T Consensus 309 ~f~~~f~~LPl~~~i~~~~~~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d 388 (476)
T KOG0376|consen 309 LFSEVFIWLPLAHLINNKVLVMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPD 388 (476)
T ss_pred hhhhhhccccchhhhcCceEEEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCC
Confidence 6669999999999999999999999764 444899999999998888899999999999998899999999999999999
Q ss_pred HHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEc-CCCceEEEEEeccccC--cCCC
Q 025995 159 VTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFN-ENMEREVKFFTETEEN--NQMR 235 (245)
Q Consensus 159 ~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~-~~~~~~~~~~~~~~~~--~~~~ 235 (245)
++..||+.++++.|||||++...||+..+ +|+|+||||||+||+..+|+||++.++ +++...+++|++.|+- ++|+
T Consensus 389 ~t~~f~~~n~l~~i~rshe~~d~gy~~eh-~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ma 467 (476)
T KOG0376|consen 389 VTERFLQDNNLDKIIRSHEVKDEGYEVEH-SGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKPMA 467 (476)
T ss_pred chhhHHhhcchHHHhhccccCCCceeeec-CCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCCcc
Confidence 99999999999999999999999999999 999999999999999999999999999 7789999999999987 5555
Q ss_pred CCC
Q 025995 236 GPR 238 (245)
Q Consensus 236 ~~~ 238 (245)
..+
T Consensus 468 ~~n 470 (476)
T KOG0376|consen 468 YAN 470 (476)
T ss_pred ccc
Confidence 443
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=100.00 E-value=4.9e-32 Score=228.24 Aligned_cols=200 Identities=44% Similarity=0.705 Sum_probs=158.3
Q ss_pred ccccccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHH--------HHHhC
Q 025995 2 KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDEC--------QRKYG 73 (245)
Q Consensus 2 ~l~~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~--------~~~~~ 73 (245)
+++++.+.++.+++|||||+||||++|.+++.+++.++.. |.++++|+||||.+.+....++..+. ...+.
T Consensus 15 ~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (225)
T cd00144 15 RLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKL 93 (225)
T ss_pred HHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcchhhccchhHHHHHhh
Confidence 4677788888899999999999999999999999999877 88999999999999887655443321 12233
Q ss_pred CchhhhHHHHHHhhcccceeEcC-eEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCC-ccCCCCc
Q 025995 74 NANAWRYCTDVFDYLTLSAIIDG-TVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETW-AVSPRGA 151 (245)
Q Consensus 74 ~~~~~~~~~~~~~~LPl~~~i~~-~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~-~~~~rg~ 151 (245)
...++..+.+++..||+++.++. +++|||||+++.....++.. ..+......+++|+||.....+ ..+.++.
T Consensus 94 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~~~~~~~~~lw~r~~~~~~~~~~~~~~~ 167 (225)
T cd00144 94 GEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEPEDQLPEDLLWSDPLELPGGFGSSRRGG 167 (225)
T ss_pred CHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCcccccceeeeecCCCCCCCCCcCCCCCC
Confidence 45677888999999999999876 89999999998875444433 2233455789999998743322 2223332
Q ss_pred eeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEE
Q 025995 152 GWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILS 213 (245)
Q Consensus 152 ~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~ 213 (245)
|+++.+.+++.++.+.|||||+++..|+.... .+++++|+|++.|++..+|..+++.
T Consensus 168 ----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~-~~~~i~IDtg~~~~~~~~~~l~~~~ 224 (225)
T cd00144 168 ----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGH-DGNLITIDSGCNYCGGGGNKLAALV 224 (225)
T ss_pred ----CHHHHHHHHHHCCCeEEEEcCccccCccEEcC-CCCEEEEecCCcccCCCCccEEEEe
Confidence 89999999999999999999999999986545 8899999999999877677777664
No 20
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.89 E-value=3.5e-22 Score=170.94 Aligned_cols=174 Identities=20% Similarity=0.290 Sum_probs=115.8
Q ss_pred ccccccCC---------CCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcC-------Ch
Q 025995 2 KLFQTGGH---------VPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYG-------FY 65 (245)
Q Consensus 2 ~l~~~~g~---------~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~-------f~ 65 (245)
++++++++ |+++++|||||||||||+|.+||++++++. .+.++++|+||||.++++...+ ..
T Consensus 18 ~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~~l~~~~~~~~~~~~gg 95 (245)
T PRK13625 18 ALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNKLYRFFLGRNVTIAHGL 95 (245)
T ss_pred HHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHHHHHHHhCCCccccchh
Confidence 45666666 356889999999999999999999999884 3458999999999988764321 13
Q ss_pred HHHHHHhCC------chhhhHHHHHHhhcccceeE-cCeEEEEeCCCCCCCC--CHHHHHHhhhcccCCCCCCccccccC
Q 025995 66 DECQRKYGN------ANAWRYCTDVFDYLTLSAII-DGTVLCVHGGLSPDIR--TIDQIRVIERNCEIPHEGPFCDLMWS 136 (245)
Q Consensus 66 ~e~~~~~~~------~~~~~~~~~~~~~LPl~~~i-~~~~l~vHgGi~~~~~--~l~~i~~i~r~~~~~~~~~~~~llWs 136 (245)
.+++..|.. ..+.+.+.+++++||++..+ .++++|||||+.|... ..+++. ..++|+
T Consensus 96 ~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~~~~~~~~~~--------------~~~l~~ 161 (245)
T PRK13625 96 ETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDYIGRQDKKVQ--------------TFVLYG 161 (245)
T ss_pred HhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHhcccchhhhh--------------hHHhhc
Confidence 445555532 24567789999999998877 3679999999987631 111111 233443
Q ss_pred CCCC---------CCCCccCCCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCC
Q 025995 137 DPED---------IETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGN 207 (245)
Q Consensus 137 dp~~---------~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n 207 (245)
+-.. ...|.... .+...+|.||+++.... . .+..+.|.+...| ++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~------------------~g~~~vV~GHtp~~~~~---~-~~~~i~IDtGa~~----gG 215 (245)
T PRK13625 162 DITGEKHPDGSPVRRDWAKEY------------------KGTAWIVYGHTPVKEPR---F-VNHTVNIDTGCVF----GG 215 (245)
T ss_pred cccCCcCCCCCeeeeccchhc------------------CCCcEEEECCCCCccce---e-cCCeEEEECcCcc----CC
Confidence 2110 01121111 24456889999886432 3 4568999999866 45
Q ss_pred eEEEEEEcCC
Q 025995 208 VASILSFNEN 217 (245)
Q Consensus 208 ~~avl~i~~~ 217 (245)
+=+.+.+++.
T Consensus 216 ~Ltal~l~~~ 225 (245)
T PRK13625 216 RLTALRYPEM 225 (245)
T ss_pred EEEEEECCCC
Confidence 6667777744
No 21
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.89 E-value=7.3e-23 Score=171.03 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=110.4
Q ss_pred CCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhC---CCcEEEeccCcccchhhhhcCCh-HHHHHHhC-----Cchh---
Q 025995 10 VPETNYIFMGDFVDRGYNSLEVFTILLLLKARY---PANITLLRGNHESRQLTQVYGFY-DECQRKYG-----NANA--- 77 (245)
Q Consensus 10 ~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~---p~~v~~lrGNHE~~~~~~~~~f~-~e~~~~~~-----~~~~--- 77 (245)
.+.+.+|++||+|||||++.+|++++++|+... +.++++|+||||.+.+...+.+. ........ ...+
T Consensus 31 ~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRRELFSP 110 (208)
T ss_pred CCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHHHHcchhccCChhHHHHHHhhhhhHHHhcCC
Confidence 356889999999999999999999999997543 45799999999999986543321 11111110 0111
Q ss_pred hhHHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeCh
Q 025995 78 WRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGS 157 (245)
Q Consensus 78 ~~~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~ 157 (245)
...+.+|++.+|+...+++ +++||||++| +|++.-.... ... .-+.
T Consensus 111 ~~~~~~~L~~lP~~~~~~~-~~fvHag~~~--------------------------~w~r~y~~~~--~~~-----~~~~ 156 (208)
T cd07425 111 GGELGRWLRSKPVIVKVND-TLFVHGGLGP--------------------------LWYRGYSKET--SDK-----ECAA 156 (208)
T ss_pred ccHHHHHHHhCCeEEEECC-EEEEeCCcHH--------------------------HHhhHhhhhh--hhc-----cchH
Confidence 2356899999999988765 9999999832 3433110000 000 0012
Q ss_pred HHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCC
Q 025995 158 RVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPN 200 (245)
Q Consensus 158 ~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~ 200 (245)
..+.++++.++.+.||+|||+++.|....+ +|++|+|+++.+
T Consensus 157 ~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~-~g~~i~ID~g~~ 198 (208)
T cd07425 157 AHLDKVLERLGAKRMVVGHTPQEGGIVTFC-GGKVIRIDVGMS 198 (208)
T ss_pred HHHHHHHHHcCCCeEEEcCeeeecCceEEE-CCEEEEEeCCcc
Confidence 467889999999999999999998886556 999999999654
No 22
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.86 E-value=4.6e-21 Score=161.72 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=71.4
Q ss_pred CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCC-----------------hHHHHHHhC
Q 025995 11 PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGF-----------------YDECQRKYG 73 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f-----------------~~e~~~~~~ 73 (245)
+.+++|||||||||||+|.+||++++++... .++++|+||||.+++....+- ..++++.++
T Consensus 33 ~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 110 (222)
T cd07413 33 PERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIAWHTKDPSGGEWLRAHSKKNLRQHQAFLEQFR 110 (222)
T ss_pred CCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHHhhhCCcccchhhhcCCCcccccHHHHHHHHh
Confidence 5679999999999999999999999998633 489999999999987532110 013334442
Q ss_pred -CchhhhHHHHHHhhcccceeEcCeEEEEeCCCC
Q 025995 74 -NANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLS 106 (245)
Q Consensus 74 -~~~~~~~~~~~~~~LPl~~~i~~~~l~vHgGi~ 106 (245)
..+..+.+.+|++.||+....+ ++++||||+.
T Consensus 111 ~~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~~ 143 (222)
T cd07413 111 EHSEEHKDWLEWFKTLPLFLDLG-GVRVVHACWD 143 (222)
T ss_pred ccchhHHHHHHHHhcCCcEEEEC-CEEEEECCcC
Confidence 2345678899999999988764 5999999985
No 23
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.84 E-value=4.5e-20 Score=156.91 Aligned_cols=184 Identities=18% Similarity=0.284 Sum_probs=113.3
Q ss_pred cccccCCCC----------CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcC-------Ch
Q 025995 3 LFQTGGHVP----------ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYG-------FY 65 (245)
Q Consensus 3 l~~~~g~~~----------~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~-------f~ 65 (245)
+|++.++.+ .+++|||||||||||+|.|||++|++++.. .++++|+||||.++++...+ -.
T Consensus 19 ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE~~l~~~~~~~~~~~~~~~ 96 (234)
T cd07423 19 LLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHDNKLYRKLQGRNVKITHGL 96 (234)
T ss_pred HHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcHHHHHHHhcCCCccccCcc
Confidence 556665542 468999999999999999999999988643 47999999999988764221 01
Q ss_pred HHHHHHhC--CchhhhHHHHHHhhcccceeEc-CeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCC
Q 025995 66 DECQRKYG--NANAWRYCTDVFDYLTLSAIID-GTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIE 142 (245)
Q Consensus 66 ~e~~~~~~--~~~~~~~~~~~~~~LPl~~~i~-~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~ 142 (245)
.++...+. ...+.+...++++.||+...++ ++++|||||+++....... .......+|.+.....
T Consensus 97 ~~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 164 (234)
T cd07423 97 EETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEEMIGRDS------------KRVRSFALYGDTTGET 164 (234)
T ss_pred cchHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChHhccccc------------hhheeeeecccccCCc
Confidence 23344442 2356678899999999988774 5799999998764321100 0011222443321000
Q ss_pred CCccCCCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCC
Q 025995 143 TWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNEN 217 (245)
Q Consensus 143 ~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~ 217 (245)
..-+.. . ...... ...+.+.+|.||++.+... . .+..+-|.+.+-| +++-+.+.+++.
T Consensus 165 ----~~~~~~-~-~~~~~~---~~~~~~~vv~GHt~~~~~~---~-~~~~i~IDtGav~----gG~Lt~l~~~~~ 222 (234)
T cd07423 165 ----DEFGLP-V-RRDWAK---EYRGDALVVYGHTPVPEPR---W-LNNTINIDTGCVF----GGKLTALRYPER 222 (234)
T ss_pred ----CCCCCc-c-chhhHh---hCCCCeEEEECCCCCccce---E-eCCEEEEECCCCC----CCcceEEECCCC
Confidence 000000 0 000000 1245678999999987533 2 3457899998876 345556667643
No 24
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.84 E-value=6.4e-20 Score=158.96 Aligned_cols=210 Identities=17% Similarity=0.232 Sum_probs=128.9
Q ss_pred ccccccCCC-CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCCh----HHHHHHhCCch
Q 025995 2 KLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY----DECQRKYGNAN 76 (245)
Q Consensus 2 ~l~~~~g~~-~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~----~e~~~~~~~~~ 76 (245)
+++++.++. ..+++|||||+|||||+|.+|+++++++ +.++++|+||||.+++...++.. .++..++-...
T Consensus 18 ~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g~~~~~~~~~l~~~l~~~ 93 (275)
T PRK00166 18 RLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAGIKRNKKKDTLDPILEAP 93 (275)
T ss_pred HHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcCCccccchhHHHHHHccc
Confidence 356777764 5688999999999999999999999887 24799999999998876544422 22333332334
Q ss_pred hhhHHHHHHhhcccceeE-cCeEEEEeCCCCCCCCCHHHHHH----hhhcccCCC-CCCccccccCCCCCCCCCccCCCC
Q 025995 77 AWRYCTDVFDYLTLSAII-DGTVLCVHGGLSPDIRTIDQIRV----IERNCEIPH-EGPFCDLMWSDPEDIETWAVSPRG 150 (245)
Q Consensus 77 ~~~~~~~~~~~LPl~~~i-~~~~l~vHgGi~~~~~~l~~i~~----i~r~~~~~~-~~~~~~llWsdp~~~~~~~~~~rg 150 (245)
..+++.+|++.+|+...+ ++++++||||++|.+. +++... +...+..+. ...+..+.|+.|. .|.+...|
T Consensus 94 ~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~~-~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~---~W~~~l~~ 169 (275)
T PRK00166 94 DRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQWD-LATALALAREVEAVLRSDDYRDFLANMYGNEPD---RWSPDLTG 169 (275)
T ss_pred cHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHhcCCCcC---ccCcccCc
Confidence 456788999999998776 5679999999999873 333211 111111111 1123344444442 11111111
Q ss_pred ce-eee------------------------------ChHHHHHh-hhhCCceEEEeccceeecceEEEecCCceEEEecC
Q 025995 151 AG-WLF------------------------------GSRVTSEF-NHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSA 198 (245)
Q Consensus 151 ~~-~~f------------------------------g~~~~~~f-l~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa 198 (245)
.. ..+ +-.+-.++ -+...-..||-||.+...|... ...++.+.|+
T Consensus 170 ~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~G~~~---~~~~~~LDtG 246 (275)
T PRK00166 170 LERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPGRKTRDYTIVFGHWAALEGLTT---PPNIIALDTG 246 (275)
T ss_pred hHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcCccCCCCeEEEecCcccCCccC---CCCeEEeecc
Confidence 10 000 00000000 0012234799999999878865 6789999999
Q ss_pred CCcCCcCCCeEEEEEEcCCCceEEEEEeccc
Q 025995 199 PNYCYRCGNVASILSFNENMEREVKFFTETE 229 (245)
Q Consensus 199 ~~y~~~~~n~~avl~i~~~~~~~~~~~~~~~ 229 (245)
..+ +++=..|.++ ..++.|-.|..
T Consensus 247 cvw----gg~Lta~~l~---~~~~~~~~~~~ 270 (275)
T PRK00166 247 CVW----GGKLTALRLE---DKQIFQVPCLK 270 (275)
T ss_pred ccc----CCeEEEEEeC---CCcEEEEeCcc
Confidence 876 5567778887 23455555543
No 25
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.82 E-value=6.5e-19 Score=152.12 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=116.8
Q ss_pred CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCC-cEEEeccCcccchhhhhcC---------------------------
Q 025995 12 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPA-NITLLRGNHESRQLTQVYG--------------------------- 63 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~-~v~~lrGNHE~~~~~~~~~--------------------------- 63 (245)
.+++|||||||||||+|.+|+++|++++..+|. .+++|+||||.+++.....
T Consensus 35 ~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~ 114 (304)
T cd07421 35 SALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFAAFLGVLPRPSDGSEFKSTWKEYEKNEEREGWY 114 (304)
T ss_pred CcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHHhHhhcCCCccchhhhhhhhccccccccccccc
Confidence 457999999999999999999999999988876 6889999999876542110
Q ss_pred -----------------------------------C-hHHHHHHhCCc--------hhhhHHHHHHhhcccceeEcCeE-
Q 025995 64 -----------------------------------F-YDECQRKYGNA--------NAWRYCTDVFDYLTLSAIIDGTV- 98 (245)
Q Consensus 64 -----------------------------------f-~~e~~~~~~~~--------~~~~~~~~~~~~LPl~~~i~~~~- 98 (245)
+ ..+++++||-. .+-+...+|++.||.....++ +
T Consensus 115 ~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~~~~~~l~~avP~~H~~fl~~l~~~~~~~~-~~ 193 (304)
T cd07421 115 KGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVPHGSSDLIKAVPEEHKKFLRNLVWVHEEDD-VC 193 (304)
T ss_pred cccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCCcchHHHHHhCCHHHHHHHHhCCceEEeCc-cc
Confidence 0 23455666532 344678899999999877544 5
Q ss_pred ------------EEEeCCCCCCCCCHHHHHHhhh-cccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHHHHhhh
Q 025995 99 ------------LCVHGGLSPDIRTIDQIRVIER-NCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNH 165 (245)
Q Consensus 99 ------------l~vHgGi~~~~~~l~~i~~i~r-~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~ 165 (245)
+|||||+-|....-+|.+.+.. ....| -.+++|.+... -..++..
T Consensus 194 ~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~d~~~p----~~~~l~~R~~f----~~~~~~~-------------- 251 (304)
T cd07421 194 IETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKDTSIP----KIAPLSGRKNV----WNIPQEL-------------- 251 (304)
T ss_pred ccccccccccceEEEEcccCCCCChHHhhhhhhccccccc----cccccccchhh----hcCcccc--------------
Confidence 9999999998876666665442 12222 24899999541 1111110
Q ss_pred hCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEc
Q 025995 166 INNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFN 215 (245)
Q Consensus 166 ~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~ 215 (245)
...-.+||.||+. +... .+.=|.|.+...|.+ .--|++++.
T Consensus 252 ~~~~~~VVhGHt~-----~~~~-~~~Ri~iDtGa~~~~---~l~aa~vlp 292 (304)
T cd07421 252 ADKKTIVVSGHHG-----KLHI-DGLRLIIDEGGGFDD---RPIAAIVLP 292 (304)
T ss_pred cCCCeEEEECCCC-----Ccee-cCCEEEEECCCCcCC---ceeEEEEec
Confidence 0011578999992 2334 677788899988753 334555554
No 26
>PHA02239 putative protein phosphatase
Probab=99.81 E-value=2.3e-19 Score=152.41 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=103.1
Q ss_pred CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhc--------------CChHHHHHHhCCc-
Q 025995 11 PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVY--------------GFYDECQRKYGNA- 75 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~--------------~f~~e~~~~~~~~- 75 (245)
+.+.+||+|||||||++|.+++.+++++.. .+.++++|+||||.+++.... ....+++..|+..
T Consensus 29 ~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~ 107 (235)
T PHA02239 29 PEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIMENVDRLSIYDIEWLSRYCIETLNSYGVST 107 (235)
T ss_pred CCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHhCchhcccchHHHHHcCCHHHHHHcCCCC
Confidence 468899999999999999999999998753 345899999999998765321 1123445566421
Q ss_pred -----------------------------hhhhHHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCC
Q 025995 76 -----------------------------NAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPH 126 (245)
Q Consensus 76 -----------------------------~~~~~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~ 126 (245)
....++.+|++.||+....+ +++|||||+.|... +++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~ifVHAGi~p~~~-~~~------------ 173 (235)
T PHA02239 108 VTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KYIFSHSGGVSWKP-VEE------------ 173 (235)
T ss_pred ccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CEEEEeCCCCCCCC-hhh------------
Confidence 12245566899999987765 59999999987643 322
Q ss_pred CCCccccccCCCCCCCCCccCCCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCc
Q 025995 127 EGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNY 201 (245)
Q Consensus 127 ~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y 201 (245)
....+++|.+. |... ..-+.||.||||+..+... . .++.|.|.+...|
T Consensus 174 -q~~~~llWiR~-----f~~~-------------------~~g~~vV~GHTp~~~~~~~-~-~~~~I~IDtGa~~ 221 (235)
T PHA02239 174 -QTIDQLIWSRD-----FQPR-------------------KDGFTYVCGHTPTDSGEVE-I-NGDMLMCDVGAVF 221 (235)
T ss_pred -CCHhHeEEecc-----cCCC-------------------CCCcEEEECCCCCCCCccc-c-cCCEEEeecCccc
Confidence 12378999993 2111 1224788999988665433 2 3557899998765
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.80 E-value=4.3e-19 Score=149.33 Aligned_cols=161 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred ccccccCCC-CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCCh--------HHHHHHh
Q 025995 2 KLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY--------DECQRKY 72 (245)
Q Consensus 2 ~l~~~~g~~-~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~--------~e~~~~~ 72 (245)
++|+++++. ..++++||||+|||||+|.+||+++.+. ++++|+||||.+++....+-. .++....
T Consensus 34 ~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~~l~~~~~~~~~~w~~~gg~~~~~l 107 (218)
T PRK11439 34 RKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQMALDALASQQMSLWLMNGGDWFIAL 107 (218)
T ss_pred HHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHHHHHHHHCCccchhhhCCChhhhhc
Confidence 467777775 5788999999999999999999998652 678999999999886432110 0111111
Q ss_pred CC--chhhhHHHHHHhhcccceeE---cCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccC
Q 025995 73 GN--ANAWRYCTDVFDYLTLSAII---DGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVS 147 (245)
Q Consensus 73 ~~--~~~~~~~~~~~~~LPl~~~i---~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~ 147 (245)
.. .+.+..+.++++.||+...+ ++++++||||++... .+.. .+ ....+++|++......+.
T Consensus 108 ~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~--~~~~----~~------~~~~~~~w~r~~~~~~~~-- 173 (218)
T PRK11439 108 TDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADV--YEWQ----KD------VDLHQVLWSRSRLGERQK-- 173 (218)
T ss_pred chhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCc--hhhh----cc------CCccceEEcChhhhhccc--
Confidence 11 13445677899999998765 357999999984321 1110 00 123467898743111100
Q ss_pred CCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCc
Q 025995 148 PRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNY 201 (245)
Q Consensus 148 ~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y 201 (245)
.+ ...+.+.+|.||++++.-. . .+..+.|.+.+-|
T Consensus 174 ~~---------------~~~~~~~vv~GHT~~~~~~---~-~~~~i~IDtGav~ 208 (218)
T PRK11439 174 GQ---------------GITGADHFWFGHTPLRHRV---D-IGNLHYIDTGAVF 208 (218)
T ss_pred cc---------------cccCCCEEEECCccCCCcc---c-cCCEEEEECCCCC
Confidence 00 1124467899999986543 2 4557999998876
No 28
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.80 E-value=3e-19 Score=153.23 Aligned_cols=108 Identities=24% Similarity=0.310 Sum_probs=83.8
Q ss_pred ccccccCCC-CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCCh----HHHHHHhCCch
Q 025995 2 KLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY----DECQRKYGNAN 76 (245)
Q Consensus 2 ~l~~~~g~~-~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~----~e~~~~~~~~~ 76 (245)
+++++.++. ..+++||+||+|||||+|+||++++++++ .++++|+||||.+++...++.. .+...++-...
T Consensus 16 ~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~~~~~~~t~~~~l~~~ 91 (257)
T cd07422 16 RLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIKKPKKKDTLDDILNAP 91 (257)
T ss_pred HHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCccccccHhHHHHHHhcc
Confidence 466777875 57899999999999999999999999885 4799999999999876544421 22333332334
Q ss_pred hhhHHHHHHhhcccceeEcC-eEEEEeCCCCCCCCCHHH
Q 025995 77 AWRYCTDVFDYLTLSAIIDG-TVLCVHGGLSPDIRTIDQ 114 (245)
Q Consensus 77 ~~~~~~~~~~~LPl~~~i~~-~~l~vHgGi~~~~~~l~~ 114 (245)
..+++.+|+.++|+...+++ ++++||||++|.+ ++++
T Consensus 92 ~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~ 129 (257)
T cd07422 92 DRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQ 129 (257)
T ss_pred chHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHH
Confidence 45678999999999988764 7999999999987 4444
No 29
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.76 E-value=2.2e-17 Score=137.89 Aligned_cols=165 Identities=21% Similarity=0.296 Sum_probs=103.7
Q ss_pred cccccCCC-CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcC--ChHHHHHHhCC-----
Q 025995 3 LFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYG--FYDECQRKYGN----- 74 (245)
Q Consensus 3 l~~~~g~~-~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~--f~~e~~~~~~~----- 74 (245)
+++..++. ..+.++++||+||||+++.++++++.. .++++|+||||.+.+....+ ...+.....+.
T Consensus 19 ~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
T cd07424 19 ALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRAEPLDAVRWLANGGEWFLD 92 (207)
T ss_pred HHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhCCCcchhHHHhcCCeehhh
Confidence 45556654 467899999999999999999999865 26899999999998765433 11222222222
Q ss_pred ---chhhhHHHHHHhhcccceeEc---CeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCC
Q 025995 75 ---ANAWRYCTDVFDYLTLSAIID---GTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSP 148 (245)
Q Consensus 75 ---~~~~~~~~~~~~~LPl~~~i~---~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~ 148 (245)
.++.+...++++.||+...++ .++++||||+++... ...+. + +........+++|+++.......
T Consensus 93 ~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~---~--~~~~~~~~~~~~w~~~~~~~~~~--- 163 (207)
T cd07424 93 LPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVG---A--VTLRPEDIEELLWSRTRIQKAQT--- 163 (207)
T ss_pred cChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhh---c--cccCcccceeeeeccchhhhcCc---
Confidence 124566888999999998773 479999999865431 11110 0 11122345678898754211100
Q ss_pred CCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCc
Q 025995 149 RGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNY 201 (245)
Q Consensus 149 rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y 201 (245)
...-+.+.||.||++.+.-+. .+..+-|...+-+
T Consensus 164 ---------------~~~~~~~~iV~GHTh~~~~~~----~~~~i~ID~Gsv~ 197 (207)
T cd07424 164 ---------------QPIKGVDAVVHGHTPVKRPLR----LGNVLYIDTGAVF 197 (207)
T ss_pred ---------------cccCCCCEEEECCCCCCcceE----ECCEEEEECCCCC
Confidence 011144678999998875433 2335777777654
No 30
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.75 E-value=4.6e-18 Score=146.50 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=83.9
Q ss_pred ccccccCCC-CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCCh----HHHHHHhCCch
Q 025995 2 KLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY----DECQRKYGNAN 76 (245)
Q Consensus 2 ~l~~~~g~~-~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~----~e~~~~~~~~~ 76 (245)
++|+++++. ..++++|+||+|||||+|+|||+++.++. .++++|+||||.+++....++. .+....+-...
T Consensus 18 ~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~~~~~~~d~l~~~l~a~ 93 (279)
T TIGR00668 18 ALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGISRNKPKDRLDPLLEAP 93 (279)
T ss_pred HHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCCCccCchHHHHHHHHcc
Confidence 467888875 56889999999999999999999998874 3678999999999887665541 22333322345
Q ss_pred hhhHHHHHHhhcccceeEc-CeEEEEeCCCCCCCCCHHH
Q 025995 77 AWRYCTDVFDYLTLSAIID-GTVLCVHGGLSPDIRTIDQ 114 (245)
Q Consensus 77 ~~~~~~~~~~~LPl~~~i~-~~~l~vHgGi~~~~~~l~~ 114 (245)
..+++.+|+.++|+..... .++++||||++|.+. +++
T Consensus 94 ~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w~-l~~ 131 (279)
T TIGR00668 94 DADELLNWLRRQPLLQHDEEKKLVMAHAGITPQWD-LQT 131 (279)
T ss_pred CHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCCc-HHH
Confidence 6688999999999987653 469999999999884 444
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.70 E-value=3.2e-16 Score=131.91 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=96.6
Q ss_pred cccccCCC-CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCC-h-------HHHHHHhC
Q 025995 3 LFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGF-Y-------DECQRKYG 73 (245)
Q Consensus 3 l~~~~g~~-~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f-~-------~e~~~~~~ 73 (245)
+++...+. ..+++|+|||+|||||+|.+|++++.+ .+++.|+||||.+++.....- . .++..+..
T Consensus 33 ~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~~~~~~~~~~~~~~~gg~~~~~l~ 106 (218)
T PRK09968 33 RLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMALDAFETGDGNMWLASGGDWFFDLN 106 (218)
T ss_pred HHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHHHHHhcCChhHHHHccCHHHhcCC
Confidence 44555544 457899999999999999999999854 268899999999887643110 0 11111111
Q ss_pred Cc--hhhhHHHHHHhhcccceeE---cCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCC
Q 025995 74 NA--NAWRYCTDVFDYLTLSAII---DGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSP 148 (245)
Q Consensus 74 ~~--~~~~~~~~~~~~LPl~~~i---~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~ 148 (245)
.+ .......++++.||+...+ +.++++||||++... ..... .....+++|.++.....+
T Consensus 107 ~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~--~~~~~----------~~~~~~~~w~r~~~~~~~---- 170 (218)
T PRK09968 107 DSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDE--YDFGK----------EIAESELLWPVDRVQKSL---- 170 (218)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCch--hhhcc----------ccchhhceeCcHHHhhCc----
Confidence 11 1223446689999998876 346999999984321 11100 011245688763311111
Q ss_pred CCceeeeChHHHHHhh-hhCCceEEEeccceeecceEEEecCCceEEEecCCCc
Q 025995 149 RGAGWLFGSRVTSEFN-HINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNY 201 (245)
Q Consensus 149 rg~~~~fg~~~~~~fl-~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y 201 (245)
+.+. ...+.+.+|.||++.+.= . . .+..+-|...+.|
T Consensus 171 ------------~~~~~~~~~~~~vv~GHTh~~~~-~--~-~~~~i~IDtGs~~ 208 (218)
T PRK09968 171 ------------NGELQQINGADYFIFGHMMFDNI-Q--T-FANQIYIDTGSPK 208 (218)
T ss_pred ------------cccccccCCCCEEEECCCCcCcc-e--e-ECCEEEEECCCCC
Confidence 0011 124667899999988532 2 2 2336778777765
No 32
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.90 E-value=9.4e-09 Score=79.61 Aligned_cols=141 Identities=44% Similarity=0.803 Sum_probs=109.8
Q ss_pred hhcCChHHHHHHhCCchhhhH---HHHHHhhcccceeEcC-eEEEEeCCCCCCC-CCHHHHHHhhhcc--cCCCCCCccc
Q 025995 60 QVYGFYDECQRKYGNANAWRY---CTDVFDYLTLSAIIDG-TVLCVHGGLSPDI-RTIDQIRVIERNC--EIPHEGPFCD 132 (245)
Q Consensus 60 ~~~~f~~e~~~~~~~~~~~~~---~~~~~~~LPl~~~i~~-~~l~vHgGi~~~~-~~l~~i~~i~r~~--~~~~~~~~~~ 132 (245)
..+++..++...++....|.. ..++|+.+|+.+.+.+ ..+|.|+++++.. ..+++++.+.|.. .....+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~ 84 (155)
T COG0639 5 ALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHD 84 (155)
T ss_pred hhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCCcccccc
Confidence 344555665555543324554 9999999999999887 8999999999865 4677777777655 5556666777
Q ss_pred cccCCCCC--CCCCccCCCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcC
Q 025995 133 LMWSDPED--IETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYC 202 (245)
Q Consensus 133 llWsdp~~--~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~ 202 (245)
.+|+++.. ...|.+.++|.+..+ ++....|+..+..+.+.++|+....++...+ ++..+|.|++++|+
T Consensus 85 ~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~-~~~~lt~~~~~~~~ 154 (155)
T COG0639 85 LLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVF-GGGLLTAFSAPNYC 154 (155)
T ss_pred ccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhcccceEEEEeEEEecCceEEe-CCCeeeEEeccccc
Confidence 79998873 577888888888766 7788888888887779999999999998876 54899999999985
No 33
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.86 E-value=3.3e-08 Score=76.94 Aligned_cols=135 Identities=21% Similarity=0.143 Sum_probs=81.8
Q ss_pred CCCCcEEEeCcccCCCCCcHHHHHHH--HHhhhhCCCcEEEeccCcccchhhhhcCChHHHHH-----------------
Q 025995 10 VPETNYIFMGDFVDRGYNSLEVFTIL--LLLKARYPANITLLRGNHESRQLTQVYGFYDECQR----------------- 70 (245)
Q Consensus 10 ~~~~~~vflGD~vDRG~~s~evl~~l--~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~----------------- 70 (245)
+..+.+|++||++|+|..+.+..... .......+..+++++||||................
T Consensus 30 ~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (200)
T PF00149_consen 30 NKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKV 109 (200)
T ss_dssp TTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEE
T ss_pred CCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceeccccccccccccccccccccccccCccee
Confidence 34577999999999999888877764 44444556689999999999875432211111100
Q ss_pred ----------------HhCCchhhhHHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccc
Q 025995 71 ----------------KYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLM 134 (245)
Q Consensus 71 ----------------~~~~~~~~~~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~ll 134 (245)
.............+.............++++|.++.+........
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~------------------- 170 (200)
T PF00149_consen 110 IFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSY------------------- 170 (200)
T ss_dssp EEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSSTTSSSTHHH-------------------
T ss_pred eecccccccccccccccccccccchhcccccccccccccccceeEEEecCCCCcccccccc-------------------
Confidence 000001112222233333333344567999999987543211110
Q ss_pred cCCCCCCCCCccCCCCceeeeChHHHHHhhhhCCceEEEecccee
Q 025995 135 WSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLV 179 (245)
Q Consensus 135 Wsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~ 179 (245)
.........+..+++..++++++.||+..
T Consensus 171 ----------------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~ 199 (200)
T PF00149_consen 171 ----------------GNESKGREALEELLKKYNVDLVLSGHTHR 199 (200)
T ss_dssp ----------------SSEEEHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred ----------------chhhccHHHHHHHHhhCCCCEEEeCceec
Confidence 11245667899999999999999999864
No 34
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.24 E-value=1.3e-05 Score=68.15 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=82.1
Q ss_pred CcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhh--------------------cC---------
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQV--------------------YG--------- 63 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~--------------------~~--------- 63 (245)
|.++++||+++ ++.+++..+.++. + .++.++||||.+..... ++
T Consensus 27 D~Vl~~GDi~~---~~~~~~~~l~~l~--~--p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~ 99 (238)
T cd07397 27 DLVLFVGDFGN---ESVQLVRAISSLP--L--PKAVILGNHDAWYDATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPL 99 (238)
T ss_pred CEEEECCCCCc---ChHHHHHHHHhCC--C--CeEEEcCCCcccccccccchHHHHHHHHHHhCCcEEeecccccCCCCe
Confidence 78999999986 4577777776552 3 58999999998553200 00
Q ss_pred ---------------Ch-HHHHHHhCCchhhhHHHHHHhhcccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCC
Q 025995 64 ---------------FY-DECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHE 127 (245)
Q Consensus 64 ---------------f~-~e~~~~~~~~~~~~~~~~~~~~LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~ 127 (245)
+. .++.+.|+-.+.++.+...++.++.+......++++|++++-. .++.+++
T Consensus 100 ~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~G~---g~~~~~~--------- 167 (238)
T cd07397 100 SVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLILLAHNGPSGL---GSDAEDP--------- 167 (238)
T ss_pred EEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCcCC---Ccccccc---------
Confidence 01 2455556656777888888898874444455799999997542 1221111
Q ss_pred CCccccccCCCCCCCCCccCCCCceeeeChHHHHHhhhhCC----ceEEEeccceee
Q 025995 128 GPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINN----LDLVCRAHQLVQ 180 (245)
Q Consensus 128 ~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~----~~~iIrgH~~~~ 180 (245)
+.- .|... +.-+|...+.+.++... .++++-||--..
T Consensus 168 ---cg~---------d~~~~----~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~ 208 (238)
T cd07397 168 ---CGR---------DWKPP----GGDWGDPDLALAISQIQQGRQVPLVVFGHMHHR 208 (238)
T ss_pred ---ccc---------ccCCc----CCCCCCHHHHHHHHHHhccCCCCEEEeCCccCc
Confidence 111 12111 11357777766666544 688888987664
No 35
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.23 E-value=2.2e-05 Score=62.04 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=27.8
Q ss_pred CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 12 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
-+.++++||++++++.+. ++ ....++.++||||...
T Consensus 25 ~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~ 60 (155)
T cd00841 25 VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEV 60 (155)
T ss_pred CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcC
Confidence 578999999999998765 11 1236899999999753
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.22 E-value=1.6e-05 Score=61.52 Aligned_cols=101 Identities=23% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCCCcEEEeCcccCCCCCcH--HHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHHHHhh
Q 025995 10 VPETNYIFMGDFVDRGYNSL--EVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDY 87 (245)
Q Consensus 10 ~~~~~~vflGD~vDRG~~s~--evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~ 87 (245)
+..+.+|++||++++|..+. +.++++..++ .| .++.++||||....
T Consensus 18 ~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~~----------------------------- 65 (135)
T cd07379 18 PDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTLD----------------------------- 65 (135)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcCC-----------------------------
Confidence 34577999999999986432 3445554432 22 36789999996421
Q ss_pred cccceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHHHHhhhhC
Q 025995 88 LTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHIN 167 (245)
Q Consensus 88 LPl~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~ 167 (245)
.-+.+++++||.+.... +..+. ....|...+.+++++.
T Consensus 66 -----~~~~~ilv~H~~p~~~~----------------------~~~~~---------------~~~~g~~~~~~~~~~~ 103 (135)
T cd07379 66 -----PEDTDILVTHGPPYGHL----------------------DLVSS---------------GQRVGCEELLNRVQRV 103 (135)
T ss_pred -----CCCCEEEEECCCCCcCc----------------------ccccc---------------CcccCCHHHHHHHHHH
Confidence 11457999998532110 00000 0134667888889999
Q ss_pred CceEEEeccceeecceE
Q 025995 168 NLDLVCRAHQLVQEGLK 184 (245)
Q Consensus 168 ~~~~iIrgH~~~~~G~~ 184 (245)
+.+.+|.||.-.+.|+.
T Consensus 104 ~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 104 RPKLHVFGHIHEGYGAE 120 (135)
T ss_pred CCcEEEEcCcCCcCcee
Confidence 99999999999998876
No 37
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=98.18 E-value=3.7e-05 Score=72.54 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=48.0
Q ss_pred eChHHHHHhhhhCCce----EEEeccceee--cceEEEecCCceEEEecC--CCcCCcCCCeEEEEEEcCCCceEEEEEe
Q 025995 155 FGSRVTSEFNHINNLD----LVCRAHQLVQ--EGLKYMFQDKGLVTVWSA--PNYCYRCGNVASILSFNENMEREVKFFT 226 (245)
Q Consensus 155 fg~~~~~~fl~~~~~~----~iIrgH~~~~--~G~~~~~~~~~vitifSa--~~y~~~~~n~~avl~i~~~~~~~~~~~~ 226 (245)
-.++..+..|+..|++ .||.||+||. .|=.+--++||++.|..+ -.|....|=+|=.|..+..+ +..++-+
T Consensus 506 ~~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskAYqk~TGIAGYTLiyNS~g-l~L~~H~ 584 (640)
T PF06874_consen 506 EDEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKAYQKTTGIAGYTLIYNSYG-LQLVAHQ 584 (640)
T ss_pred cCHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhhhccccCccceEEEecCCc-ceeccCC
Confidence 3567888899999998 9999999996 787776679999999653 33444433344445444332 4444433
No 38
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.11 E-value=0.00013 Score=57.93 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=28.2
Q ss_pred CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 11 PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
.-+.++++||++ +.+++..+..+. ..++.++||||..
T Consensus 28 ~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 28 NVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred CCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 347899999999 467777775542 2589999999973
No 39
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.08 E-value=0.00015 Score=60.76 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=42.9
Q ss_pred ChHHHHHhhhhC-CceEEEeccceeecceEEE----ecCCceEEEecCCCcCCcCCCeE-EEEEEcCC-CceEEEEEec
Q 025995 156 GSRVTSEFNHIN-NLDLVCRAHQLVQEGLKYM----FQDKGLVTVWSAPNYCYRCGNVA-SILSFNEN-MEREVKFFTE 227 (245)
Q Consensus 156 g~~~~~~fl~~~-~~~~iIrgH~~~~~G~~~~----~~~~~vitifSa~~y~~~~~n~~-avl~i~~~-~~~~~~~~~~ 227 (245)
+...+.+.++++ ++++++-||.-.. +.... ..++.+..+.+-.......+|.. .++.++++ ..+.+.+|.|
T Consensus 136 ~~~~~~~ll~~~~~V~~v~~GH~H~~-~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 136 GQQIWDKLVKKNDNVFMVLSGHVHGA-GRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred HHHHHHHHHhCCCCEEEEEccccCCC-ceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 455677888888 8999999997653 22221 11445666655443322223222 47777777 4677777765
No 40
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.99 E-value=0.00025 Score=60.39 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=91.6
Q ss_pred CCcEEEeCcccCC--C-----CCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHHH
Q 025995 12 ETNYIFMGDFVDR--G-----YNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDV 84 (245)
Q Consensus 12 ~~~~vflGD~vDR--G-----~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~ 84 (245)
-+.++++||++|. | +...+++..+..++.. +-.++.++||||..... ...+..+.
T Consensus 33 ~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~GNHD~~~~~-------~~~~~~g~---------- 94 (241)
T PRK05340 33 ADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMHGNRDFLLGK-------RFAKAAGM---------- 94 (241)
T ss_pred CCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEeCCCchhhhH-------HHHHhCCC----------
Confidence 3679999999985 2 3345677777777533 23799999999974321 11122211
Q ss_pred Hhhcc--cceeE-cCeEEEEeCCCCCCCC-CHHHHHHhhhccc-C--CCCCCccccccCCCC-CCCCCc-cCCCCce-ee
Q 025995 85 FDYLT--LSAII-DGTVLCVHGGLSPDIR-TIDQIRVIERNCE-I--PHEGPFCDLMWSDPE-DIETWA-VSPRGAG-WL 154 (245)
Q Consensus 85 ~~~LP--l~~~i-~~~~l~vHgGi~~~~~-~l~~i~~i~r~~~-~--~~~~~~~~llWsdp~-~~~~~~-~~~rg~~-~~ 154 (245)
..+| ....+ +.+++++||-.-+... .-...+.+-|... . ....+...-+|--+. ....-. ...+... .-
T Consensus 95 -~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~ 173 (241)
T PRK05340 95 -TLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMD 173 (241)
T ss_pred -EEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccC
Confidence 1122 22223 4579999998653211 1111222222100 0 000000000000000 000000 0011111 12
Q ss_pred eChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEE
Q 025995 155 FGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFF 225 (245)
Q Consensus 155 fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~ 225 (245)
...+.+.+.++..+++.+|.||.-++.-..... ++.-++-.+-.+. ...+.+++++.++ .+++.|
T Consensus 174 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~-~~~~~~~~~lgdw----~~~~~~~~~~~~~-~~~~~~ 238 (241)
T PRK05340 174 VNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQA-GGQPATRIVLGDW----HEQGSVLKVDADG-VELIPF 238 (241)
T ss_pred CCHHHHHHHHHHhCCCEEEECcccCcceeeccC-CCcceEEEEeCCC----CCCCeEEEEECCc-eEEEeC
Confidence 355778889999999999999998865443322 3211122222222 2347788888654 666655
No 41
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.98 E-value=0.0005 Score=56.00 Aligned_cols=35 Identities=17% Similarity=0.501 Sum_probs=27.8
Q ss_pred CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCccc
Q 025995 12 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHES 55 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~ 55 (245)
-+.++.+||+++ .+++.++..+. + .++.++||||.
T Consensus 30 ~d~iih~GDi~~-----~~~~~~l~~~~---~-~~~~V~GN~D~ 64 (178)
T cd07394 30 IQHVLCTGNLCS-----KETYDYLKTIA---P-DVHIVRGDFDE 64 (178)
T ss_pred CCEEEECCCCCC-----HHHHHHHHhhC---C-ceEEEECCCCc
Confidence 378999999987 77777775552 2 58999999996
No 42
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=97.97 E-value=5.2e-05 Score=56.70 Aligned_cols=93 Identities=25% Similarity=0.290 Sum_probs=64.8
Q ss_pred CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHHHHhhcccc
Q 025995 12 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLS 91 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~LPl~ 91 (245)
.+.+|++||+++.+..+.+...............++++.||||
T Consensus 27 ~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD------------------------------------- 69 (131)
T cd00838 27 PDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD------------------------------------- 69 (131)
T ss_pred CCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-------------------------------------
Confidence 4679999999999888777665522223334458999999999
Q ss_pred eeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHHHHhhhhCCceE
Q 025995 92 AIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDL 171 (245)
Q Consensus 92 ~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ 171 (245)
++++|..+.+..... .+.. ......+...+...+.+.
T Consensus 70 ------i~~~H~~~~~~~~~~---------------------~~~~----------------~~~~~~~~~~~~~~~~~~ 106 (131)
T cd00838 70 ------ILLTHGPPYDPLDEL---------------------SPDE----------------DPGSEALLELLEKYGVDL 106 (131)
T ss_pred ------EEEeccCCCCCchhh---------------------cccc----------------hhhHHHHHHHHHHhCCCE
Confidence 899998875432100 0000 004567788888899999
Q ss_pred EEeccceeecceE
Q 025995 172 VCRAHQLVQEGLK 184 (245)
Q Consensus 172 iIrgH~~~~~G~~ 184 (245)
+|.||+.....+.
T Consensus 107 ~~~GH~H~~~~~~ 119 (131)
T cd00838 107 VLSGHTHVYERRE 119 (131)
T ss_pred EEeCCeecccccc
Confidence 9999999876554
No 43
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.96 E-value=9.3e-05 Score=57.59 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=61.8
Q ss_pred CCcEEEeCcccCCCCCc--HHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHHHHhhcc
Q 025995 12 ETNYIFMGDFVDRGYNS--LEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLT 89 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s--~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~LP 89 (245)
-+.++++||+++.|... .+...++..++... ..++.++||||.
T Consensus 36 ~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~---------------------------------- 80 (144)
T cd07400 36 PDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV---------------------------------- 80 (144)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE----------------------------------
Confidence 47799999999988742 12334444443221 269999999997
Q ss_pred cceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHHHHhhhhCCc
Q 025995 90 LSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNL 169 (245)
Q Consensus 90 l~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~ 169 (245)
++++|.-+.+... -|.+ .. .+.+.+.+++++.++
T Consensus 81 --------iv~~Hhp~~~~~~-----------------------~~~~---------~~------~~~~~~~~~l~~~~~ 114 (144)
T cd07400 81 --------IVVLHHPLVPPPG-----------------------SGRE---------RL------LDAGDALKLLAEAGV 114 (144)
T ss_pred --------EEEecCCCCCCCc-----------------------cccc---------cC------CCHHHHHHHHHHcCC
Confidence 7888876533110 0000 00 045678888999999
Q ss_pred eEEEeccceeecceEE
Q 025995 170 DLVCRAHQLVQEGLKY 185 (245)
Q Consensus 170 ~~iIrgH~~~~~G~~~ 185 (245)
+.++.||.-.+..+..
T Consensus 115 ~~~l~GH~H~~~~~~~ 130 (144)
T cd07400 115 DLVLHGHKHVPYVGNI 130 (144)
T ss_pred CEEEECCCCCcCeeec
Confidence 9999999998765553
No 44
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=97.95 E-value=0.00012 Score=57.41 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=60.6
Q ss_pred CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHHHHhhcccc
Q 025995 12 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLS 91 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~LPl~ 91 (245)
-+.++++||++|+ .++++.+... .++.++||||......... .+. +.+....
T Consensus 26 ~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~~~~~-----------~~~------~~~~~~~- 77 (156)
T PF12850_consen 26 PDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFPNEND-----------EEY------LLDALRL- 77 (156)
T ss_dssp ESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHHSEEC-----------TCS------SHSEEEE-
T ss_pred CCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccchhhhh-----------ccc------cccceee-
Confidence 4679999999993 7777776544 6999999999655332211 000 1111111
Q ss_pred eeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCCCCccCCCCceeeeChHHHHHhhhhCCceE
Q 025995 92 AIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDL 171 (245)
Q Consensus 92 ~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ 171 (245)
..-+.+++++||..... ..+.+.+.+.+...++++
T Consensus 78 ~~~~~~i~~~H~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~ 112 (156)
T PF12850_consen 78 TIDGFKILLSHGHPYDV---------------------------------------------QWDPAELREILSRENVDL 112 (156)
T ss_dssp EETTEEEEEESSTSSSS---------------------------------------------TTTHHHHHHHHHHTTSSE
T ss_pred eecCCeEEEECCCCccc---------------------------------------------ccChhhhhhhhcccCCCE
Confidence 11155799999965320 023345667778999999
Q ss_pred EEeccceeecceE
Q 025995 172 VCRAHQLVQEGLK 184 (245)
Q Consensus 172 iIrgH~~~~~G~~ 184 (245)
++.||.-.+.-.+
T Consensus 113 ~~~GH~H~~~~~~ 125 (156)
T PF12850_consen 113 VLHGHTHRPQVFK 125 (156)
T ss_dssp EEESSSSSEEEEE
T ss_pred EEcCCcccceEEE
Confidence 9999999865544
No 45
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.81 E-value=9.5e-05 Score=62.65 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=37.5
Q ss_pred eChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCC
Q 025995 155 FGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENM 218 (245)
Q Consensus 155 fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~ 218 (245)
.....+.+.++..+++.+|.||+-.+.-..... ++.-.+-.+-.+. ...+.++++++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~-~~~~~~~~~lgdW----~~~~~~~~~~~~g 230 (231)
T TIGR01854 172 VNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQA-DGQPATRIVLGDW----YRQGSILRVDADG 230 (231)
T ss_pred CCHHHHHHHHHHcCCCEEEECCccCcceeeccc-CCCccEEEEECCC----ccCCeEEEEcCCC
Confidence 356778888899999999999998866444332 3322233333333 1236677777664
No 46
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.78 E-value=0.0002 Score=57.20 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=30.8
Q ss_pred CCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 10 VPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 10 ~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
+.-+.++++||+++++..+..+. ++... ..+..++.++||||..
T Consensus 25 ~~~d~li~~GDi~~~~~~~~~~~-~~~~~--~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 25 PDADILVLAGDIGYLTDAPRFAP-LLLAL--KGFEPVIYVPGNHEFY 68 (166)
T ss_pred CCCCEEEECCCCCCCcchHHHHH-HHHhh--cCCccEEEeCCCcceE
Confidence 34467999999999887665543 22222 2334799999999985
No 47
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.59 E-value=0.0062 Score=52.28 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=22.8
Q ss_pred hHHHHHhhhhCCceEEEeccceeecceE
Q 025995 157 SRVTSEFNHINNLDLVCRAHQLVQEGLK 184 (245)
Q Consensus 157 ~~~~~~fl~~~~~~~iIrgH~~~~~G~~ 184 (245)
...+.+.+++.+++.++.||.-......
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~ 222 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGR 222 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceE
Confidence 3567778899999999999999876543
No 48
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0004 Score=58.55 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=90.1
Q ss_pred CCCcEEEeCcccC--CCCC-c----HHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHH
Q 025995 11 PETNYIFMGDFVD--RGYN-S----LEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTD 83 (245)
Q Consensus 11 ~~~~~vflGD~vD--RG~~-s----~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~ 83 (245)
..+.+.+|||++| .|.+ . -+|...|..+.. ....++.+.||||..+ ...+ ....|.
T Consensus 29 ~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~-~G~~v~~i~GN~Dfll-~~~f------~~~~g~--------- 91 (237)
T COG2908 29 QADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLAR-KGTRVYYIHGNHDFLL-GKRF------AQEAGG--------- 91 (237)
T ss_pred cCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHh-cCCeEEEecCchHHHH-HHHH------HhhcCc---------
Confidence 4577999999998 3544 2 344444444432 2348999999999543 2221 122221
Q ss_pred HHhhcccceeE---cCeEEEEeCCCCCCCCCHHHHHHhhh-cccC----------CCC--CCccccccCCCCCCCCCccC
Q 025995 84 VFDYLTLSAII---DGTVLCVHGGLSPDIRTIDQIRVIER-NCEI----------PHE--GPFCDLMWSDPEDIETWAVS 147 (245)
Q Consensus 84 ~~~~LPl~~~i---~~~~l~vHgGi~~~~~~l~~i~~i~r-~~~~----------~~~--~~~~~llWsdp~~~~~~~~~ 147 (245)
+.-+|-...+ +.+++++||-.-. +.+.--.+-+ ..+. |-. .-+..-+|+.. .|...
T Consensus 92 -~~l~~~~~~~~l~g~~~Ll~HGD~f~---t~~~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s----~~~k~ 163 (237)
T COG2908 92 -MTLLPDPIVLDLYGKRILLAHGDTFC---TDDRAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLS----SWAKK 163 (237)
T ss_pred -eEEcCcceeeeecCcEEEEEeCCccc---chHHHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhh----HHhHH
Confidence 2223333333 6799999996432 1111111111 1000 000 00112234442 11111
Q ss_pred --CCCcee-eeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCc
Q 025995 148 --PRGAGW-LFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENME 219 (245)
Q Consensus 148 --~rg~~~-~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~ 219 (245)
.....+ -.....+.+-++++|++.+|.||+-.+..-.. ++ ..-|-- |.....+++++++++..
T Consensus 164 ~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i---~~-~~yi~l-----GdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 164 KVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNI---PG-ITYINL-----GDWVSEGSILEVDDGGL 229 (237)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccC---CC-ceEEec-----CcchhcceEEEEecCcE
Confidence 111111 24567788889999999999999998766554 33 111111 11125689999986654
No 49
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=97.42 E-value=0.033 Score=48.29 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=39.0
Q ss_pred ChHHHHHhhhhC-CceEEEeccceeecceEEEecCCceEEEecCCCcCCcC----C-----C--eE-EEEEEcCCCceEE
Q 025995 156 GSRVTSEFNHIN-NLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRC----G-----N--VA-SILSFNENMEREV 222 (245)
Q Consensus 156 g~~~~~~fl~~~-~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~----~-----n--~~-avl~i~~~~~~~~ 222 (245)
+...+.+.+++. +++.++-||.-...-.. . +| ++++++|.-|... + + .| .++.+++++.+.-
T Consensus 182 n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~--~-~g--i~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g~~~~ 256 (275)
T PRK11148 182 NAHELAEVLAKFPNVKAILCGHIHQELDLD--W-NG--RRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHADGSLET 256 (275)
T ss_pred CHHHHHHHHhcCCCceEEEecccChHHhce--E-CC--EEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCCCcEEE
Confidence 557888999997 89999999998854322 3 44 3444454443211 1 1 12 3777777776544
Q ss_pred EE
Q 025995 223 KF 224 (245)
Q Consensus 223 ~~ 224 (245)
..
T Consensus 257 ~~ 258 (275)
T PRK11148 257 EV 258 (275)
T ss_pred EE
Confidence 33
No 50
>PRK09453 phosphodiesterase; Provisional
Probab=97.38 E-value=0.00016 Score=58.96 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCcEEEeCcccCCCCC--------cHHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 12 ETNYIFMGDFVDRGYN--------SLEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~--------s~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
-+.++++||++|+|++ +.++++.+..+. ..+++++||||...
T Consensus 28 ~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNhD~~~ 77 (182)
T PRK09453 28 ADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA----DKIIAVRGNCDSEV 77 (182)
T ss_pred CCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC----CceEEEccCCcchh
Confidence 4789999999999874 456776665432 36999999999753
No 51
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.23 E-value=0.0023 Score=52.70 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=29.8
Q ss_pred CcEEEeCcccCCCCC---cHHHHHHHHHhhhhCCCcEEEeccCcc
Q 025995 13 TNYIFMGDFVDRGYN---SLEVFTILLLLKARYPANITLLRGNHE 54 (245)
Q Consensus 13 ~~~vflGD~vDRG~~---s~evl~~l~~lk~~~p~~v~~lrGNHE 54 (245)
+.+|++||+++.+.. +.+.+..+++......-.++++.||||
T Consensus 43 d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 43 DLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred CEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 679999999997665 355665554433333346899999999
No 52
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.13 E-value=0.0042 Score=47.76 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.6
Q ss_pred ChHHHHHhhhhCCceEEEeccceeecceE
Q 025995 156 GSRVTSEFNHINNLDLVCRAHQLVQEGLK 184 (245)
Q Consensus 156 g~~~~~~fl~~~~~~~iIrgH~~~~~G~~ 184 (245)
|...+.++++..+.+.++-||.-.+..+.
T Consensus 79 g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 79 GFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred CHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 55678888899999999999999877665
No 53
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=97.08 E-value=0.013 Score=49.25 Aligned_cols=28 Identities=7% Similarity=-0.065 Sum_probs=22.3
Q ss_pred ChHHHHHhhhhC-CceEEEeccceeecce
Q 025995 156 GSRVTSEFNHIN-NLDLVCRAHQLVQEGL 183 (245)
Q Consensus 156 g~~~~~~fl~~~-~~~~iIrgH~~~~~G~ 183 (245)
+...+.+.+++. +++.+|-||.-...-.
T Consensus 169 ~~~~~~~~l~~~~~v~~v~~GH~H~~~~~ 197 (240)
T cd07402 169 NAEALAAVLARHPNVRAILCGHVHRPIDG 197 (240)
T ss_pred CHHHHHHHHhcCCCeeEEEECCcCchHHe
Confidence 456778888888 9999999999885433
No 54
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=96.98 E-value=0.00097 Score=55.08 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=32.3
Q ss_pred CcEEEeCcccCCCCCc--HHHHHHHHHhhhhCC----CcEEEeccCcccc
Q 025995 13 TNYIFMGDFVDRGYNS--LEVFTILLLLKARYP----ANITLLRGNHESR 56 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s--~evl~~l~~lk~~~p----~~v~~lrGNHE~~ 56 (245)
+-+||+||++|.|+.+ .+..+.+..++..++ ..++.|.||||.-
T Consensus 44 D~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 44 DIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred CEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 6799999999999964 346666655554322 2788999999974
No 55
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=96.88 E-value=0.00091 Score=58.08 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=31.0
Q ss_pred CCcEEEeCcccCCC--CCcHHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 12 ETNYIFMGDFVDRG--YNSLEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 12 ~~~~vflGD~vDRG--~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
-|-++++||++|++ .+..++.+.+..|+... .++.+.||||..
T Consensus 81 pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 81 PDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred CCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 36799999999953 23345666666666544 499999999974
No 56
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=96.81 E-value=0.0015 Score=52.79 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=29.4
Q ss_pred CcEEEeCcccCCCCCc--HH---HHHHHHHhhhhC-----CCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYNS--LE---VFTILLLLKARY-----PANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s--~e---vl~~l~~lk~~~-----p~~v~~lrGNHE~~~ 57 (245)
+.+|++||++|.+... .+ .+..+.++.... ...++.|.||||...
T Consensus 47 d~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 47 DVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 6799999999988743 22 333333321111 346999999999854
No 57
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.79 E-value=0.054 Score=46.75 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=22.0
Q ss_pred eeChHHHHHhhhhCCceEEEeccce
Q 025995 154 LFGSRVTSEFNHINNLDLVCRAHQL 178 (245)
Q Consensus 154 ~fg~~~~~~fl~~~~~~~iIrgH~~ 178 (245)
+-..+..+.+|++.+-.+|.-||+-
T Consensus 202 ~l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 202 LLEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred ecCHHHHHHHHHhhCCcEEEecCCC
Confidence 4577899999999999999999885
No 58
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.79 E-value=0.0018 Score=52.05 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=31.6
Q ss_pred CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchh
Q 025995 11 PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQL 58 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~ 58 (245)
+.+.+|++||++++|..+.. +.++.++ +..+++++||||....
T Consensus 42 ~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 42 PDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred CCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 45889999999999986544 4444433 3469999999997543
No 59
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.67 E-value=0.0022 Score=51.01 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=28.4
Q ss_pred CcEEEeCcccCCCCCc-HH----HHHHHHHhhhhC-CCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYNS-LE----VFTILLLLKARY-PANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s-~e----vl~~l~~lk~~~-p~~v~~lrGNHE~~~ 57 (245)
+.+|++||++|.+..+ .+ .+..+.++.... ...++.+.||||...
T Consensus 40 d~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 40 DVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred CEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 6799999999987642 22 222222222111 236999999999743
No 60
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=96.66 E-value=0.0017 Score=54.19 Aligned_cols=43 Identities=30% Similarity=0.469 Sum_probs=32.0
Q ss_pred CcEEEeCcccCCCCCcH-HHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYNSL-EVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~-evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+.+++.||++|.+.... ++..++..+.. +..++.+.||||...
T Consensus 34 d~vl~~GD~~~~~~~~~~~~~~~l~~l~~--~~~v~~v~GNHD~~~ 77 (223)
T cd07385 34 DLVVLTGDLVDGSVDVLELLLELLKKLKA--PLGVYAVLGNHDYYS 77 (223)
T ss_pred CEEEEcCcccCCcchhhHHHHHHHhccCC--CCCEEEECCCccccc
Confidence 67899999999987765 55555554432 346999999999854
No 61
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.66 E-value=0.13 Score=44.04 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=35.4
Q ss_pred cccCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhh--hhCCCcEEEeccCcccchhh
Q 025995 5 QTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLK--ARYPANITLLRGNHESRQLT 59 (245)
Q Consensus 5 ~~~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk--~~~p~~v~~lrGNHE~~~~~ 59 (245)
+.+..++-|.+|+.||+.++|. .+-.+.+..+- ...|..++.++||||.....
T Consensus 27 ~~i~~~~~D~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~~ 81 (301)
T COG1409 27 AAIEQLKPDLLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPGNHDARVVN 81 (301)
T ss_pred HHHhcCCCCEEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCCCCcCCchH
Confidence 3444444488999999999963 33333333332 25566899999999987754
No 62
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.62 E-value=0.0019 Score=52.17 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=28.2
Q ss_pred CCcEEEeCcccCCCCCcH-HHHHHH-HHhhhhCCCcEEEeccCcccch
Q 025995 12 ETNYIFMGDFVDRGYNSL-EVFTIL-LLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~-evl~~l-~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
-+.+|++||++|....+. +....+ .......+..+++++||||...
T Consensus 42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 42 PERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred CCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 378999999998654322 222111 1111223347999999999754
No 63
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.41 E-value=0.0031 Score=52.33 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=31.3
Q ss_pred CcEEEeCcccCCCCCcHHHHHHHHHh-hhh--CCCcEEEeccCcccchh
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTILLLL-KAR--YPANITLLRGNHESRQL 58 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l~~l-k~~--~p~~v~~lrGNHE~~~~ 58 (245)
+.+|+.||++|....+.+.+..+... +.. ..-.++++.||||....
T Consensus 43 d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 43 DFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCCCCccc
Confidence 56999999999876665544443332 211 13479999999998654
No 64
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.40 E-value=0.15 Score=41.35 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcC--CcCCCeEEEEEEcCC-CceEEEEEecc
Q 025995 159 VTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYC--YRCGNVASILSFNEN-MEREVKFFTET 228 (245)
Q Consensus 159 ~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~--~~~~n~~avl~i~~~-~~~~~~~~~~~ 228 (245)
.+...-+..+++.+|.||+-.+.=.+. ++ ++-| .|.-+ ..+++..+++.++-+ .++....++..
T Consensus 100 ~l~~la~~~~~Dvli~GHTH~p~~~~~---~~-i~~v--NPGS~s~pr~~~~~sy~il~~~~~~~~~~~~~~~ 166 (172)
T COG0622 100 LLEYLAKELGADVLIFGHTHKPVAEKV---GG-ILLV--NPGSVSGPRGGNPASYAILDVDNLEVEVLFLERD 166 (172)
T ss_pred HHHHHHHhcCCCEEEECCCCcccEEEE---CC-EEEE--cCCCcCCCCCCCCcEEEEEEcCCCEEEEEEeecc
Confidence 455556677889999999988544332 33 2222 22221 123444455555533 55666666544
No 65
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.34 E-value=0.0031 Score=53.59 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 12 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
-+-+|+.||++++.+.+.+++..+.++ .+..++.+.||||..
T Consensus 33 ~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 33 IDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred CCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 467999999999877666666655543 234699999999974
No 66
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=96.31 E-value=0.0058 Score=51.67 Aligned_cols=44 Identities=9% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 12 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
-|.+|.+||++++|+..-++..++..+... +..++.++||||..
T Consensus 32 ~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 32 ADAIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 378999999999997777777777666432 23689999999974
No 67
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.23 E-value=0.0074 Score=50.02 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=22.5
Q ss_pred ChHHHHHhhhhCCceEEEeccceeecceE
Q 025995 156 GSRVTSEFNHINNLDLVCRAHQLVQEGLK 184 (245)
Q Consensus 156 g~~~~~~fl~~~~~~~iIrgH~~~~~G~~ 184 (245)
....+.+.++..+++.+|.||+-++.-..
T Consensus 177 ~~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 205 (217)
T cd07398 177 FEEAVARLARRKGVDGVICGHTHRPALHE 205 (217)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCeEE
Confidence 44566777889999999999998865443
No 68
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.03 E-value=0.01 Score=51.09 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCcEEEeCcccCCCCCcHHHH----HHHHHhhhhCCCcEEEeccCcccc
Q 025995 12 ETNYIFMGDFVDRGYNSLEVF----TILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl----~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
-+.+++.||++|+..-+.+.. .++..|+...|-.++++.||||..
T Consensus 40 ~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 40 IDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred CCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 367999999999876554433 344445443334699999999974
No 69
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=95.86 E-value=0.014 Score=46.28 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 10 VPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 10 ~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
.|+|.+.+|||+.-.-.+--+....+-+ -|.+.++++||||---
T Consensus 44 ~p~D~lwhLGDl~~~~n~~~~a~~Iler----LnGrkhlv~GNhDk~~ 87 (186)
T COG4186 44 GPDDVLWHLGDLSSGANRERAAGLILER----LNGRKHLVPGNHDKCH 87 (186)
T ss_pred CccceEEEecccccccchhhHHHHHHHH----cCCcEEEeeCCCCCCc
Confidence 4789999999998644443333333333 3678999999999743
No 70
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.74 E-value=0.014 Score=49.36 Aligned_cols=44 Identities=7% Similarity=-0.108 Sum_probs=29.4
Q ss_pred ChHHHHHhhhhCCceEEEeccceeecceEE---EecCCceEEEecCCCcC
Q 025995 156 GSRVTSEFNHINNLDLVCRAHQLVQEGLKY---MFQDKGLVTVWSAPNYC 202 (245)
Q Consensus 156 g~~~~~~fl~~~~~~~iIrgH~~~~~G~~~---~~~~~~vitifSa~~y~ 202 (245)
+...+.+.+++.++++++-||+-...-... .. +| |+.+++|+-|
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~-~g--i~~~~~~~~~ 227 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGER-GG--IRYQLVSADY 227 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceE-CC--EEEEEEcchh
Confidence 345667788888999999999987544331 23 44 5566666544
No 71
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.68 E-value=0.012 Score=50.82 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=29.7
Q ss_pred CcEEEeCcccCCCCC-cHHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYN-SLEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~-s~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+-+|++||+++.|.. +.+-+..+...-...+-.++.++||||...
T Consensus 42 d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~~ 87 (267)
T cd07396 42 DFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLGNHDLYN 87 (267)
T ss_pred CEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecCcccccc
Confidence 569999999998862 223333333332222346999999999854
No 72
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=95.67 E-value=0.013 Score=47.18 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=26.0
Q ss_pred eChHHHHHhhhhCCceEEEeccceeecceE
Q 025995 155 FGSRVTSEFNHINNLDLVCRAHQLVQEGLK 184 (245)
Q Consensus 155 fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~ 184 (245)
.|...+.+++++.+.++++.||.-.+.+..
T Consensus 148 ~g~~~l~~li~~~~~~~~l~GH~H~~~~~~ 177 (188)
T cd07392 148 VGSKAIRKFIEERQPLLCICGHIHESRGVD 177 (188)
T ss_pred cCCHHHHHHHHHhCCcEEEEecccccccee
Confidence 477899999999999999999998876654
No 73
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=95.51 E-value=0.021 Score=47.09 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=28.5
Q ss_pred CcEEEeCcccCCCCCcHHH-HHHHHHhhhhC---------------------CCcEEEeccCcccc
Q 025995 13 TNYIFMGDFVDRGYNSLEV-FTILLLLKARY---------------------PANITLLRGNHESR 56 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~ev-l~~l~~lk~~~---------------------p~~v~~lrGNHE~~ 56 (245)
+.++||||++|.|.-+-+- -......+..+ .-.++.|.||||.-
T Consensus 46 d~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG 111 (193)
T cd08164 46 DAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVG 111 (193)
T ss_pred CEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCC
Confidence 6788999999998644322 23333333222 13678999999983
No 74
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=95.44 E-value=0.019 Score=50.33 Aligned_cols=44 Identities=25% Similarity=0.276 Sum_probs=32.7
Q ss_pred CcEEEeCcccCC-CC-CcHHHHHHHHHhhhhCCCcEEEeccCcccchh
Q 025995 13 TNYIFMGDFVDR-GY-NSLEVFTILLLLKARYPANITLLRGNHESRQL 58 (245)
Q Consensus 13 ~~~vflGD~vDR-G~-~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~ 58 (245)
|-+++.||++|+ .+ ..-.++..+..|+.. -.++.+.||||...-
T Consensus 75 DlivltGD~~~~~~~~~~~~~~~~L~~L~~~--~gv~av~GNHd~~~~ 120 (284)
T COG1408 75 DLIVLTGDYVDGDRPPGVAALALFLAKLKAP--LGVFAVLGNHDYGVD 120 (284)
T ss_pred CEEEEEeeeecCCCCCCHHHHHHHHHhhhcc--CCEEEEecccccccc
Confidence 789999999995 44 445556666666544 479999999987653
No 75
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.38 E-value=0.017 Score=49.70 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=22.7
Q ss_pred HHHhhhhCCceEEEeccceeecceEEE
Q 025995 160 TSEFNHINNLDLVCRAHQLVQEGLKYM 186 (245)
Q Consensus 160 ~~~fl~~~~~~~iIrgH~~~~~G~~~~ 186 (245)
+.+.+++.++++++.||.-...+....
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 777889999999999999998884443
No 76
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=95.37 E-value=0.023 Score=48.07 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=27.5
Q ss_pred CcEEEeCcccCCCCCc---HHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYNS---LEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s---~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+++|++||+.+..... -++.+++..+. ..+++++||||...
T Consensus 60 d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 60 EALIINGDLKHEFKKGLEWRFIREFIEVTF----RDLILIRGNHDALI 103 (225)
T ss_pred CEEEEcCccccccCChHHHHHHHHHHHhcC----CcEEEECCCCCCcc
Confidence 7899999999754432 22333443332 37999999999754
No 77
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.31 E-value=0.018 Score=52.93 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=30.8
Q ss_pred CCcEEEeCcccCCCCCcHHHH----HHHHHhhhhCCCcEEEeccCcccch
Q 025995 12 ETNYIFMGDFVDRGYNSLEVF----TILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~evl----~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
-+.+|+.||++|++..+.+.. .++..|+.. +-.++++.||||...
T Consensus 40 ~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~-~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 40 VDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQT-GCQLVVLAGNHDSVA 88 (407)
T ss_pred CCEEEECCccccCCCCcHHHHHHHHHHHHHHHhc-CCcEEEEcCCCCChh
Confidence 467999999999986554332 333444432 236999999999754
No 78
>PHA02546 47 endonuclease subunit; Provisional
Probab=95.26 E-value=0.027 Score=50.59 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=30.3
Q ss_pred CcEEEeCcccCCC-CCcHHHHHHHHH--hh--hhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRG-YNSLEVFTILLL--LK--ARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG-~~s~evl~~l~~--lk--~~~p~~v~~lrGNHE~~~ 57 (245)
+.+|+.||++|+. +-+.+++.++.. ++ ...+-.+++|.||||...
T Consensus 41 D~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 41 TTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVGNHDMYY 90 (340)
T ss_pred CEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCCCccc
Confidence 6799999999984 455555544433 11 122347999999999743
No 79
>PRK04036 DNA polymerase II small subunit; Validated
Probab=94.98 E-value=0.031 Score=52.92 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=28.4
Q ss_pred CcEEEeCcccCC-CCCc---------------HHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDR-GYNS---------------LEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDR-G~~s---------------~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+.+|++||++|. |+.+ -++..+|..+... -.+++++||||...
T Consensus 286 d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L~~~--i~V~~ipGNHD~~~ 344 (504)
T PRK04036 286 KYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQIPED--IKIIISPGNHDAVR 344 (504)
T ss_pred CEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhhhcC--CeEEEecCCCcchh
Confidence 579999999994 3211 1344455544322 26999999999754
No 80
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.46 E-value=0.051 Score=46.07 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=28.6
Q ss_pred CcEEEeCcccCCCCC-----cHHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYN-----SLEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~-----s~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+++|++||+-.-.+. ..++-.++..++.. .+++++||||...
T Consensus 65 ~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~---evi~i~GNHD~~i 111 (235)
T COG1407 65 KRLIILGDLKHEFGKSLRQEKEEVREFLELLDER---EVIIIRGNHDNGI 111 (235)
T ss_pred CEEEEcCccccccCccccccHHHHHHHHHHhccC---cEEEEeccCCCcc
Confidence 779999999864333 34444444444322 5999999999854
No 81
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=94.05 E-value=0.042 Score=46.74 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=27.6
Q ss_pred CcEEEeCcccCCCCC------------c----HHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYN------------S----LEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~------------s----~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+.+|++||++|+... . .++..++..|.. .-.|+++.||||...
T Consensus 37 d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~--~~~v~~ipGNHD~~~ 95 (243)
T cd07386 37 KYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPS--HIKIIIIPGNHDAVR 95 (243)
T ss_pred cEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhccc--CCeEEEeCCCCCccc
Confidence 689999999997310 1 123333333432 237999999999853
No 82
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=93.88 E-value=0.065 Score=49.28 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=34.6
Q ss_pred CcEEEeCcccCCCCCcHHHHHHHHHhhhh------------------------------------CCCcEEEeccCcccc
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTILLLLKAR------------------------------------YPANITLLRGNHESR 56 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l~~lk~~------------------------------------~p~~v~~lrGNHE~~ 56 (245)
|-+|+.||++|++.-|.+++..++.+-.+ ..-.|++|-||||..
T Consensus 44 D~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p 123 (405)
T TIGR00583 44 DMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDP 123 (405)
T ss_pred CEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCc
Confidence 66899999999999998888765554321 122799999999986
Q ss_pred h
Q 025995 57 Q 57 (245)
Q Consensus 57 ~ 57 (245)
.
T Consensus 124 ~ 124 (405)
T TIGR00583 124 S 124 (405)
T ss_pred c
Confidence 4
No 83
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=93.81 E-value=1.9 Score=40.30 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=88.9
Q ss_pred EEEeCcccCCCC------------CcHHHHHHHHHhhhhCCC--cEEEeccCcccchhhhhcCChHHHHHHhCCchhhhH
Q 025995 15 YIFMGDFVDRGY------------NSLEVFTILLLLKARYPA--NITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRY 80 (245)
Q Consensus 15 ~vflGD~vDRG~------------~s~evl~~l~~lk~~~p~--~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~ 80 (245)
++..||.||-.- +..+-.+.+..+-.+-|. .|++.+||||........-...+.... ++..
T Consensus 266 liiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~ks-----lf~~ 340 (481)
T COG1311 266 LIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAVRQALPQPHFPELIKS-----LFSL 340 (481)
T ss_pred EEEecccccccccccCcccccccccchHHHHHHHHHHhhCCCCceEEEecCCCCccccccCCCCcchhhcc-----cccc
Confidence 666889999421 223334444444334454 889999999997654322222222211 1122
Q ss_pred HHHHHhhcccceeE-cCeEEEEeCCCCCCCCCHHHHHHhhhcccC--CC------------CCCccccccCCCCCCCCCc
Q 025995 81 CTDVFDYLTLSAII-DGTVLCVHGGLSPDIRTIDQIRVIERNCEI--PH------------EGPFCDLMWSDPEDIETWA 145 (245)
Q Consensus 81 ~~~~~~~LPl~~~i-~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~--~~------------~~~~~~llWsdp~~~~~~~ 145 (245)
.+-.|-.-|....+ +..++..||= +++++...-...+. +. .+...+-+|.-|...+.+
T Consensus 341 ~n~~~v~NP~~~~l~G~~vL~~hG~------sidDii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD~l- 413 (481)
T COG1311 341 NNLLFVSNPALVSLHGVDVLIYHGR------SIDDIIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKDYL- 413 (481)
T ss_pred cceEecCCCcEEEECCEEEEEecCC------CHHHHHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcCce-
Confidence 22223333444444 4468888873 55665543322111 00 111223334433321111
Q ss_pred cCCCCceeeeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCC-CceEEEE
Q 025995 146 VSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNEN-MEREVKF 224 (245)
Q Consensus 146 ~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~-~~~~~~~ 224 (245)
+ +++ --+.++.||+.. .|+.... +.+++..+|.+.+.. .+-++-|+.. +....+.
T Consensus 414 --------V-----Iee-----vPDv~~~Ghvh~-~g~~~y~-gv~~vns~T~q~qTe----fqk~vni~p~~~~v~vv~ 469 (481)
T COG1311 414 --------V-----IEE-----VPDVFHTGHVHK-FGTGVYE-GVNLVNSGTWQEQTE----FQKMVNINPTPGNVPVVD 469 (481)
T ss_pred --------e-----ecc-----CCcEEEEccccc-cceeEEe-ccceEEeeeecchhc----cceEEEecCcccceeEEe
Confidence 1 111 125788999998 7787765 789999999887743 3444545432 3444444
Q ss_pred Eec
Q 025995 225 FTE 227 (245)
Q Consensus 225 ~~~ 227 (245)
|..
T Consensus 470 ~~~ 472 (481)
T COG1311 470 FDS 472 (481)
T ss_pred ccc
Confidence 433
No 84
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=93.21 E-value=3.7 Score=35.48 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=30.1
Q ss_pred eEEEeccceeecceEEEe-cCCceEEEecCCCcCCcCCCeEEEEEEc-CCCceEEEEE
Q 025995 170 DLVCRAHQLVQEGLKYMF-QDKGLVTVWSAPNYCYRCGNVASILSFN-ENMEREVKFF 225 (245)
Q Consensus 170 ~~iIrgH~~~~~G~~~~~-~~~~vitifSa~~y~~~~~n~~avl~i~-~~~~~~~~~~ 225 (245)
..++.||++. .|.+..- .+++-+.+.|.|.|.. .|.++.+| ++++.+.+.|
T Consensus 205 hVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vlvdl~tLe~~~v~f 257 (257)
T cd07387 205 HVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAVLVNLRTLECEPISF 257 (257)
T ss_pred CEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEEEEECCcCcEEEEeC
Confidence 4677899887 3334322 1366777888899853 34443343 3566666554
No 85
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=92.89 E-value=0.15 Score=46.59 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=32.2
Q ss_pred CcEEEeCcccCCCCCc--HHHHHHHHHhhhhCCC----cEEEeccCccc
Q 025995 13 TNYIFMGDFVDRGYNS--LEVFTILLLLKARYPA----NITLLRGNHES 55 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s--~evl~~l~~lk~~~p~----~v~~lrGNHE~ 55 (245)
+..+||||++|-|... -|--+...+++.-++. .++.+.||||.
T Consensus 95 dvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 95 DVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred CEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 6688999999987643 4555555556655554 78999999997
No 86
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=92.81 E-value=0.12 Score=44.97 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=22.5
Q ss_pred ChHHHHHhhhhCCceEEEeccceeecceE
Q 025995 156 GSRVTSEFNHINNLDLVCRAHQLVQEGLK 184 (245)
Q Consensus 156 g~~~~~~fl~~~~~~~iIrgH~~~~~G~~ 184 (245)
....+.+.++++++++++-||.-.-.-..
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~ 209 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTC 209 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeec
Confidence 34567788999999999999998754443
No 87
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=92.47 E-value=0.18 Score=45.95 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=34.3
Q ss_pred CcEEEeCcccCCCCCcHHHHHHHHHhhhhCC---CcEEEeccCcccchh
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTILLLLKARYP---ANITLLRGNHESRQL 58 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l~~lk~~~p---~~v~~lrGNHE~~~~ 58 (245)
|-+|.-||+.|++.-|.+++..+...-...- -.|++|.||||..-.
T Consensus 42 D~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 42 DFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSR 90 (390)
T ss_pred CEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhc
Confidence 6689999999998888887776654322211 279999999998653
No 88
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=91.82 E-value=0.27 Score=42.89 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCCcEEEeCcccCCCCCcH--H------HHHHHHHhhhhCCC-cEEEeccCcccchh
Q 025995 11 PETNYIFMGDFVDRGYNSL--E------VFTILLLLKARYPA-NITLLRGNHESRQL 58 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~--e------vl~~l~~lk~~~p~-~v~~lrGNHE~~~~ 58 (245)
.-+-+|+.||+++.+.... + .-.+...++..+|. .|+.+.||||....
T Consensus 68 ~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 68 KPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred CCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 3466899999998876431 1 12223334444444 79999999998654
No 89
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=91.45 E-value=0.18 Score=46.63 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=35.0
Q ss_pred CcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchh
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQL 58 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~ 58 (245)
|++=.+||+-||||++-.+++-|+..- .+-+-.||||...+
T Consensus 192 DhLHiVGDIyDRGP~pd~Imd~L~~yh-----svDiQWGNHDilWm 232 (648)
T COG3855 192 DHLHIVGDIYDRGPYPDKIMDTLINYH-----SVDIQWGNHDILWM 232 (648)
T ss_pred hheeeecccccCCCCchHHHHHHhhcc-----cccccccCcceEEe
Confidence 678889999999999999999987653 77889999998544
No 90
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=90.58 E-value=0.011 Score=53.24 Aligned_cols=193 Identities=11% Similarity=-0.031 Sum_probs=109.5
Q ss_pred CcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHH-h--CCchhhhHHHHHHhhcc
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK-Y--GNANAWRYCTDVFDYLT 89 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~-~--~~~~~~~~~~~~~~~LP 89 (245)
-..|+|++.++++.++++.+.+-...+..+-.+.-..++||+..... .++.... . +...+++..++-++..+
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~~~~-----R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDSSFK-----RRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCcchh-----hhheeecccccCceEEEEeccCcCccce
Confidence 34899999999999999999998888888877888999999553322 1111111 0 11245566677777788
Q ss_pred cceeEcCeEEEEeCCCCCCCCCHHHHHHhhhcccCCCCCCccccccCCCCCCC-----CCccCCCCceeeeChH--HHHH
Q 025995 90 LSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIE-----TWAVSPRGAGWLFGSR--VTSE 162 (245)
Q Consensus 90 l~~~i~~~~l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~~llWsdp~~~~-----~~~~~~rg~~~~fg~~--~~~~ 162 (245)
...+.+ ++++.|++..|+......+.++.-..--..++... .|-.+.+.+ .|.... ....||-+ ....
T Consensus 124 ~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~gn~k--g~f~llD~~~~~k~tw~~~~--~~p~~gyDfwyqpr 198 (476)
T KOG0918|consen 124 EKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAEGNAK--GGFLLLDSDFNEKGTWEKPG--HSPLFGYDFWYQPR 198 (476)
T ss_pred eeeech-hhHhhcCCcCCcccccccCCCeeEEeecccccCCc--CCeEEecCccceecccccCC--Cccccccceeeccc
Confidence 776655 89999999999876444333222111001111111 132222211 222111 11122221 1222
Q ss_pred hhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCC
Q 025995 163 FNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENM 218 (245)
Q Consensus 163 fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~ 218 (245)
+......++..+.|.-...+... ++++ ++.++.+-|.-...+..+.+.+..++
T Consensus 199 ~~~mIstewgap~~~~~gf~~~~-v~d~--lyg~~lhvy~w~~~~~~QtidL~~~g 251 (476)
T KOG0918|consen 199 HNVMISTEWGAPNALRKGFNPAD-VEDG--LYGSHLHVYQWSPGELKQTIDLGDTG 251 (476)
T ss_pred cceEEeecccCchhhhcCCChhH-hhcc--ceeeeeEEEecCCccceeEEecCCCC
Confidence 23333444555555544444443 2344 77888888876667888888887653
No 91
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=90.23 E-value=10 Score=31.99 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCcEEEeCccc--CCCCCcHHHHHH--HHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHHHHh
Q 025995 11 PETNYIFMGDFV--DRGYNSLEVFTI--LLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFD 86 (245)
Q Consensus 11 ~~~~~vflGD~v--DRG~~s~evl~~--l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 86 (245)
.-+-+|+.||+. ++|+.-. +.+. +..++.. -..++.++||.|...+.. .+...+ ..+
T Consensus 30 ~~D~lviaGDlt~~~~~~~~~-~~~~~~~e~l~~~-~~~v~avpGNcD~~~v~~-------~l~~~~-~~v--------- 90 (226)
T COG2129 30 RADLLVIAGDLTYFHFGPKEV-AEELNKLEALKEL-GIPVLAVPGNCDPPEVID-------VLKNAG-VNV--------- 90 (226)
T ss_pred cCCEEEEecceehhhcCchHH-HHhhhHHHHHHhc-CCeEEEEcCCCChHHHHH-------HHHhcc-ccc---------
Confidence 346799999999 8887432 2222 3444422 247999999988755331 111110 000
Q ss_pred hcccceeEcCeEEEEeCCCCCCCC------CHHHHHHhhhcccCCCCCCcc-ccccCCCCCCCCCccCCCCceeeeChHH
Q 025995 87 YLTLSAIIDGTVLCVHGGLSPDIR------TIDQIRVIERNCEIPHEGPFC-DLMWSDPEDIETWAVSPRGAGWLFGSRV 159 (245)
Q Consensus 87 ~LPl~~~i~~~~l~vHgGi~~~~~------~l~~i~~i~r~~~~~~~~~~~-~llWsdp~~~~~~~~~~rg~~~~fg~~~ 159 (245)
.+-...+++--++-=||..|... +.++|....+..-........ -++-.-|.....- .+.| -...|..+
T Consensus 91 -~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d--~~~g-~~hvGS~~ 166 (226)
T COG2129 91 -HGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLTHAPPYGTLLD--TPSG-YVHVGSKA 166 (226)
T ss_pred -ccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCcceEEEecCCCCCcccc--CCCC-ccccchHH
Confidence 00112234433444455543321 345555443321110001000 0111112221111 2233 13569999
Q ss_pred HHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEcCCCceEEEEE
Q 025995 160 TSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFF 225 (245)
Q Consensus 160 ~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~~~~~~~~~~~ 225 (245)
+.++.++.+-...|.||=-...|+.. -|.-|-|-=+| .+ .-..|++.++++ .++..+|
T Consensus 167 vr~~ieefqP~l~i~GHIHEs~G~d~---iG~TivVNPG~--~~--~g~yA~i~l~~~-~Vk~~~~ 224 (226)
T COG2129 167 VRKLIEEFQPLLGLHGHIHESRGIDK---IGNTIVVNPGP--LG--EGRYALIELEKE-VVKLEQF 224 (226)
T ss_pred HHHHHHHhCCceEEEeeecccccccc---cCCeEEECCCC--cc--CceEEEEEecCc-EEEEEEe
Confidence 99999999999999999888888876 34444444444 22 346789999866 5666665
No 92
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=90.01 E-value=0.27 Score=42.29 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=20.6
Q ss_pred hHHHHHhhhhCCceEEEeccceeec
Q 025995 157 SRVTSEFNHINNLDLVCRAHQLVQE 181 (245)
Q Consensus 157 ~~~~~~fl~~~~~~~iIrgH~~~~~ 181 (245)
...+.++++++++++++-||.-...
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~~~ 214 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHNLQ 214 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccce
Confidence 3567788999999999999987643
No 93
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=81.55 E-value=1.4 Score=36.05 Aligned_cols=44 Identities=27% Similarity=0.331 Sum_probs=33.5
Q ss_pred CCCCcEEEeCccc--CCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 10 VPETNYIFMGDFV--DRGYNSLEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 10 ~~~~~~vflGD~v--DRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
.|+|.++.-||+- =|=++..+=+.+|-+| |..=+++|||||++.
T Consensus 42 ~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 42 SPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred ChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 4678888899986 3556666677776655 778899999999865
No 94
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.69 E-value=27 Score=27.76 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=22.1
Q ss_pred HHHHhhhhCCceEEEeccceeecceEE
Q 025995 159 VTSEFNHINNLDLVCRAHQLVQEGLKY 185 (245)
Q Consensus 159 ~~~~fl~~~~~~~iIrgH~~~~~G~~~ 185 (245)
.+.-.-+..+++.++-||+...+.|+.
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~Aye~ 124 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEAYEH 124 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEEEEe
Confidence 455566778999999999999888875
No 95
>PLN02533 probable purple acid phosphatase
Probab=80.52 E-value=1.6 Score=40.48 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.0
Q ss_pred HHHHHhhhhCCceEEEeccceeecc
Q 025995 158 RVTSEFNHINNLDLVCRAHQLVQEG 182 (245)
Q Consensus 158 ~~~~~fl~~~~~~~iIrgH~~~~~G 182 (245)
+.++.+++++++++++-||.-.-+.
T Consensus 312 ~~le~Ll~~~~VdlvlsGH~H~YeR 336 (427)
T PLN02533 312 ESMETLLYKARVDLVFAGHVHAYER 336 (427)
T ss_pred HHHHHHHHHhCCcEEEecceecccc
Confidence 5678889999999999999986443
No 96
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.83 E-value=0.26 Score=45.70 Aligned_cols=190 Identities=12% Similarity=-0.052 Sum_probs=109.1
Q ss_pred CCCCc-EEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCChHHHHHHhCCch--hhhHHHHHHh
Q 025995 10 VPETN-YIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNAN--AWRYCTDVFD 86 (245)
Q Consensus 10 ~~~~~-~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~--~~~~~~~~~~ 86 (245)
|...+ |++-|++++++.+..+.+..+...+...|+...+.|++||...+...++|..+....++... +...+. +.
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~--~~ 146 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKID--EE 146 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccc--cc
Confidence 44455 99999999999999999999999999999999999999999888777776665554443211 111011 11
Q ss_pred hcc-cceeEcCeEEEEeCCCC------------------CCC--CCHHHHHHhhhcccCCC-CCCccccccCCCCCCCC-
Q 025995 87 YLT-LSAIIDGTVLCVHGGLS------------------PDI--RTIDQIRVIERNCEIPH-EGPFCDLMWSDPEDIET- 143 (245)
Q Consensus 87 ~LP-l~~~i~~~~l~vHgGi~------------------~~~--~~l~~i~~i~r~~~~~~-~~~~~~llWsdp~~~~~- 143 (245)
.++ +.....+.++=-| -++ +.. .-+++...+.+....+- .....+..|+.+.+..+
T Consensus 147 ~~~~i~~~y~g~~le~~-kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGq 225 (476)
T KOG0376|consen 147 DMDLIESDYSGPVLEDH-KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQ 225 (476)
T ss_pred cccccccccCCcccccc-hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCcccc
Confidence 111 2223232222111 000 000 01122222222111111 11346778888776443
Q ss_pred CccCCCCceeeeChHHHHHhhhhCCceEEEecccee------------ecceEEEe--cCCceEEEecCCCcC
Q 025995 144 WAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLV------------QEGLKYMF--QDKGLVTVWSAPNYC 202 (245)
Q Consensus 144 ~~~~~rg~~~~fg~~~~~~fl~~~~~~~iIrgH~~~------------~~G~~~~~--~~~~vitifSa~~y~ 202 (245)
+.+..++.+...+......++-..+..-+++.+.-+ ..+|..+. ..+.+++||+++.++
T Consensus 226 fydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~ 298 (476)
T KOG0376|consen 226 FYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEV 298 (476)
T ss_pred ccchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcch
Confidence 233344444455666777788888888887777754 22332211 123588899988776
No 97
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=76.17 E-value=2.6 Score=36.08 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCcEEEeCcccCCCCC-----cHHHHHHHHHhhhhCCCcEEEeccCccc
Q 025995 11 PETNYIFMGDFVDRGYN-----SLEVFTILLLLKARYPANITLLRGNHES 55 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~-----s~evl~~l~~lk~~~p~~v~~lrGNHE~ 55 (245)
++.-++..||+++..+. ...++..+-.+. .-+...||||.
T Consensus 38 ~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 38 PNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCEEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 44567889999987653 245566555553 23567899996
No 98
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=75.75 E-value=3.1 Score=35.19 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=25.5
Q ss_pred CCCcEEEeCcccCCCCCcH-----HHHHHHHHhhhhCCCcEEEeccCccc
Q 025995 11 PETNYIFMGDFVDRGYNSL-----EVFTILLLLKARYPANITLLRGNHES 55 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~-----evl~~l~~lk~~~p~~v~~lrGNHE~ 55 (245)
|+.-++..||+++..+.+- .++..+-++. . . ++..||||.
T Consensus 37 ~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g---~-d-~~~~GNHe~ 81 (252)
T cd00845 37 ENTLLLDAGDNFDGSPPSTATKGEANIELMNALG---Y-D-AVTIGNHEF 81 (252)
T ss_pred CCeEEEeCCccCCCccchhccCCcHHHHHHHhcC---C-C-EEeeccccc
Confidence 4445778999999877643 4555444432 2 2 345699996
No 99
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=75.75 E-value=4 Score=36.61 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=27.3
Q ss_pred CcEEEeCcccCCCCCcHHHHHHH---HHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTIL---LLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l---~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
|-+||+||.|+- ..+...-..+ .+-.+.+.=-...+.||||...
T Consensus 102 DlVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 102 DLVVFTGDNIFG-HSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred CEEEEeCCcccc-cccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 669999999995 4443333333 2222333224668999999854
No 100
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=75.41 E-value=20 Score=29.49 Aligned_cols=85 Identities=13% Similarity=0.233 Sum_probs=60.8
Q ss_pred CcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcccchhhhhcCCh----------------HHHHHHhCCch
Q 025995 13 TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY----------------DECQRKYGNAN 76 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~----------------~e~~~~~~~~~ 76 (245)
..+|++| .|-+.-|.++++-+++..|-.+.++ .|+-|.|..++...|. .|..+.| -..
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~-ltS 113 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSW-LTS 113 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhh-hhh
Confidence 4588887 5899999999999998888755554 8999998876543332 2222222 235
Q ss_pred hhhHHHHHHhhcccceeEcCeEEEEeC
Q 025995 77 AWRYCTDVFDYLTLSAIIDGTVLCVHG 103 (245)
Q Consensus 77 ~~~~~~~~~~~LPl~~~i~~~~l~vHg 103 (245)
+|..+...+.++++...+...++.+-|
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECC
Confidence 677788888888888777666777766
No 101
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=74.90 E-value=4 Score=35.28 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=23.5
Q ss_pred eeChHHHHHhhhhCCceEEEeccceee
Q 025995 154 LFGSRVTSEFNHINNLDLVCRAHQLVQ 180 (245)
Q Consensus 154 ~fg~~~~~~fl~~~~~~~iIrgH~~~~ 180 (245)
..|...+.+++++..=++.+-||..+.
T Consensus 202 ~~Gs~~~~~ll~~lkPryhf~gH~H~~ 228 (262)
T cd00844 202 TLGSPAAEELLKHLKPRYWFSAHLHVK 228 (262)
T ss_pred CCCCHHHHHHHHHhCCCEEEEecCCcc
Confidence 458899999999999999999997663
No 102
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=72.59 E-value=33 Score=32.27 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=41.0
Q ss_pred ChHHHHHhhhhCCce----EEEeccceee--cceEEEecCCceEEEecC--CCcCCcCCCeEEEEEEc
Q 025995 156 GSRVTSEFNHINNLD----LVCRAHQLVQ--EGLKYMFQDKGLVTVWSA--PNYCYRCGNVASILSFN 215 (245)
Q Consensus 156 g~~~~~~fl~~~~~~----~iIrgH~~~~--~G~~~~~~~~~vitifSa--~~y~~~~~n~~avl~i~ 215 (245)
.++...+.|+..|++ .||.||+|+. +|-.+--++|++|-|... -.|....+=+|-.|..+
T Consensus 514 de~ic~kil~eFGLdpe~ghiINGHtPVke~~GE~PIKAngKliVIDGGFskAYqs~TgiAGYTllYN 581 (648)
T COG3855 514 DEEICRKILEEFGLDPEGGHIINGHTPVKEKNGENPIKANGKLIVIDGGFSKAYQSTTGIAGYTLLYN 581 (648)
T ss_pred hHHHHHHHHHHhCCCcccCceecCCCcccccCCCCCccCCCeEEEEcCchhhhhhcccccceeEeeec
Confidence 456778888888887 8999999996 465555579999999653 33443334344445444
No 103
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=70.89 E-value=3.3 Score=35.22 Aligned_cols=87 Identities=25% Similarity=0.351 Sum_probs=46.9
Q ss_pred cEEEeCccc-CC-----CCCcHHHHHHHHHhhhh-------CCCcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhH
Q 025995 14 NYIFMGDFV-DR-----GYNSLEVFTILLLLKAR-------YPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRY 80 (245)
Q Consensus 14 ~~vflGD~v-DR-----G~~s~evl~~l~~lk~~-------~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~ 80 (245)
--+||||=. || |++ -+|.+|-++... -.++|++|-||||.-. +++| .....+ . ......
T Consensus 87 pciflgdhtgdrfsti~gd~--yiltllnsm~nme~nkdsrinknvvvlagnhein~-ngny--~arlan-h--kls~gD 158 (318)
T PF13258_consen 87 PCIFLGDHTGDRFSTIFGDQ--YILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINF-NGNY--MARLAN-H--KLSAGD 158 (318)
T ss_pred cceeecCcccchhhhhcchH--HHHHHHHHHHhcccccccccccceEEEecCceecc-CchH--HHHHhh-C--CCCccc
Confidence 368999977 44 332 233333333221 2349999999999743 2222 111111 1 111122
Q ss_pred HHHHHhhcccceeE-cCeEEEEeCCCCCC
Q 025995 81 CTDVFDYLTLSAII-DGTVLCVHGGLSPD 108 (245)
Q Consensus 81 ~~~~~~~LPl~~~i-~~~~l~vHgGi~~~ 108 (245)
--..+..+|++..- ..+++..|-||-.+
T Consensus 159 TYnlIKtldVC~YD~erkvltsHHGIird 187 (318)
T PF13258_consen 159 TYNLIKTLDVCNYDPERKVLTSHHGIIRD 187 (318)
T ss_pred hhhccccccccccCcchhhhhcccCceec
Confidence 33567778877554 34688899998544
No 104
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=62.43 E-value=6.7 Score=33.81 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=15.4
Q ss_pred HHhhhh-CCceEEEeccceee
Q 025995 161 SEFNHI-NNLDLVCRAHQLVQ 180 (245)
Q Consensus 161 ~~fl~~-~~~~~iIrgH~~~~ 180 (245)
.++++. -+++.||-||+-+.
T Consensus 210 ~~la~~~~~vD~IlgGHsH~~ 230 (277)
T cd07410 210 YELAEEVPGIDAILTGHQHRR 230 (277)
T ss_pred HHHHhcCCCCcEEEeCCCccc
Confidence 455555 68999999999864
No 105
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=60.93 E-value=8.1 Score=33.14 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=21.9
Q ss_pred CcEEEeCcccCCCCCcH-----HHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 13 TNYIFMGDFVDRGYNSL-----EVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~-----evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
.-++..||+++..+.+. .++..+-++. .-.+. ||||.-
T Consensus 53 ~l~l~~GD~~~gs~~~~~~~g~~~~~~l~~~g-----~da~~-GNHefd 95 (264)
T cd07411 53 TLLLDGGDTWQGSGEALYTRGQAMVDALNALG-----VDAMV-GHWEFT 95 (264)
T ss_pred eEEEeCCCccCCChHHhhcCChhHHHHHHhhC-----CeEEe-cccccc
Confidence 33466999998766432 3444444332 22333 999963
No 106
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=58.25 E-value=11 Score=32.18 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=33.8
Q ss_pred eeChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCeEEEEEEc
Q 025995 154 LFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFN 215 (245)
Q Consensus 154 ~fg~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~~avl~i~ 215 (245)
.-|..++..+.++.+=...+.||-....|-+. . |+.+-|.-.+-..| .-|++.+.
T Consensus 192 h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~-l--G~TlVVNPGsL~~G----~yAvI~l~ 246 (255)
T PF14582_consen 192 HVGSAAVRDLIKTYNPDIVLCGHIHESHGKES-L--GKTLVVNPGSLAEG----DYAVIDLE 246 (255)
T ss_dssp TTSBHHHHHHHHHH--SEEEE-SSS-EE--EE-E--TTEEEEE--BGGGT----EEEEEETT
T ss_pred cccHHHHHHHHHhcCCcEEEecccccchhhHH-h--CCEEEecCcccccC----ceeEEEec
Confidence 45889999999999999999999988777765 3 44555544433322 56777765
No 107
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=53.69 E-value=20 Score=28.21 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccCcc
Q 025995 11 PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHE 54 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGNHE 54 (245)
|=+-++++||+..-..++-+ +.-.+.=.+..|--.+++-||||
T Consensus 26 pFd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 26 PFDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 34679999999976555533 44444445567778999999998
No 108
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=53.40 E-value=9.8 Score=33.03 Aligned_cols=39 Identities=31% Similarity=0.590 Sum_probs=22.9
Q ss_pred cEEEeCcccCC-CCCcHHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 14 NYIFMGDFVDR-GYNSLEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 14 ~~vflGD~vDR-G~~s~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
+++|+||+|.+ |..- +-.+|-.+|.+++..+++ .|=|..
T Consensus 2 ~ilfiGDi~G~~Gr~~--l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKI--VKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecCCHHHHHH--HHHHHHHHHHhCCCCEEE--EcCccc
Confidence 57899999965 3322 225566677777644443 355543
No 109
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=51.37 E-value=15 Score=33.83 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=28.6
Q ss_pred CcEEEeCcccCCCCCcH------HHHHHHHHhhh-hCCCcEEEeccCcccc
Q 025995 13 TNYIFMGDFVDRGYNSL------EVFTILLLLKA-RYPANITLLRGNHESR 56 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s~------evl~~l~~lk~-~~p~~v~~lrGNHE~~ 56 (245)
+-+|.+||-++.|..|+ +..+.++.-+. ...-.+++++||||..
T Consensus 59 ~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy~ 109 (394)
T PTZ00422 59 TFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADWD 109 (394)
T ss_pred CEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCccccc
Confidence 44788999988887754 34555543321 0112689999999973
No 110
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=48.60 E-value=16 Score=31.19 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=23.8
Q ss_pred CCCcEEEeCcccCCCCCc-----HHHHHHHHHhhhhCCCcEEEeccCccc
Q 025995 11 PETNYIFMGDFVDRGYNS-----LEVFTILLLLKARYPANITLLRGNHES 55 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s-----~evl~~l~~lk~~~p~~v~~lrGNHE~ 55 (245)
+++-++..||+++..+.+ ..++..+-++. . .+ +..||||.
T Consensus 37 ~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g---~-d~-~~~GNHef 81 (257)
T cd07408 37 DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG---Y-DA-VTPGNHEF 81 (257)
T ss_pred CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC---C-cE-Eccccccc
Confidence 345688899999876533 23333333332 1 33 45699995
No 111
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=44.54 E-value=24 Score=30.67 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=25.3
Q ss_pred CCCcEEEeCcccCCCCC-c-----HHHHHHHHHhhhhCCCcEEEeccCccc
Q 025995 11 PETNYIFMGDFVDRGYN-S-----LEVFTILLLLKARYPANITLLRGNHES 55 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~-s-----~evl~~l~~lk~~~p~~v~~lrGNHE~ 55 (245)
++.-++..||+++..+. | ..++..+-++.. . .+..||||.
T Consensus 42 ~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~----D-a~t~GNHef 87 (288)
T cd07412 42 PNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV----D-ASAVGNHEF 87 (288)
T ss_pred CCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC----e-eeeeccccc
Confidence 44568889999986653 2 245555555532 2 356699996
No 112
>PHA02131 hypothetical protein
Probab=43.19 E-value=24 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=18.1
Q ss_pred hhCCceE--EEeccceeecceEEEecCCceEE
Q 025995 165 HINNLDL--VCRAHQLVQEGLKYMFQDKGLVT 194 (245)
Q Consensus 165 ~~~~~~~--iIrgH~~~~~G~~~~~~~~~vit 194 (245)
+.||+.. |||||-.+....-..|.+++|+-
T Consensus 11 kvngitkvdmirgh~~~g~~c~imfk~~~v~d 42 (70)
T PHA02131 11 KVNGITKVDMIRGHYRFGISCWIMFKNDQVID 42 (70)
T ss_pred hhcCceEEEEeccceecceEEEEEEcCCCEEE
Confidence 3455443 58999876443334556777764
No 113
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=43.02 E-value=22 Score=30.60 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=11.3
Q ss_pred CceEEEeccceee
Q 025995 168 NLDLVCRAHQLVQ 180 (245)
Q Consensus 168 ~~~~iIrgH~~~~ 180 (245)
+++.||-||+-++
T Consensus 166 ~VdvIvGtHTHv~ 178 (255)
T cd07382 166 RVSAVVGTHTHVQ 178 (255)
T ss_pred CceEEEeCCCCcc
Confidence 4899999999875
No 114
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=40.04 E-value=17 Score=29.71 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCcEEEeCcccCCCCCcH----------HHHHHHHHhhhhCC-----CcEEEeccCcccchh
Q 025995 12 ETNYIFMGDFVDRGYNSL----------EVFTILLLLKARYP-----ANITLLRGNHESRQL 58 (245)
Q Consensus 12 ~~~~vflGD~vDRG~~s~----------evl~~l~~lk~~~p-----~~v~~lrGNHE~~~~ 58 (245)
-+.+|++|+++|.-.... .....+..+...++ -+|+++.|+||....
T Consensus 32 p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 32 PDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp ECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEEEEE--TTCTT-S
T ss_pred CcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEEEEeCCCcccccc
Confidence 367999999999622111 11111112211111 389999999998654
No 115
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=38.93 E-value=54 Score=28.70 Aligned_cols=46 Identities=28% Similarity=0.311 Sum_probs=30.8
Q ss_pred CCCCCCcEEEeCcccCCCCCcHHHHHH---HHHhhhhCCCcEEEeccCcccch
Q 025995 8 GHVPETNYIFMGDFVDRGYNSLEVFTI---LLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 8 g~~~~~~~vflGD~vDRG~~s~evl~~---l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
..|+.|.++-+||+-.-|. +-||..+ +-+|.-. +=++|+||||.-.
T Consensus 79 ~~p~gDvlihagdfT~~g~-~~ev~~fn~~~gslph~---yKIVIaGNHELtF 127 (305)
T KOG3947|consen 79 DIPDGDVLIHAGDFTNLGL-PEEVIKFNEWLGSLPHE---YKIVIAGNHELTF 127 (305)
T ss_pred cCCCCceEEeccCCccccC-HHHHHhhhHHhccCcce---eeEEEeeccceee
Confidence 3677788899999987554 4455544 3333323 4568999999854
No 116
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=36.08 E-value=48 Score=23.12 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=6.3
Q ss_pred EEEeCcccCCCCCcHH
Q 025995 15 YIFMGDFVDRGYNSLE 30 (245)
Q Consensus 15 ~vflGD~vDRG~~s~e 30 (245)
++.+|+.-|+|..+.+
T Consensus 44 i~V~G~~~d~g~~~~~ 59 (91)
T PF02875_consen 44 IAVFGAMGDLGSKDKD 59 (91)
T ss_dssp EEEEEEBTT-HTSHHH
T ss_pred EEEEccccccccccHH
Confidence 3444444444444433
No 117
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=35.91 E-value=48 Score=28.51 Aligned_cols=36 Identities=31% Similarity=0.576 Sum_probs=24.3
Q ss_pred cEEEeCcccCC-CCCcHHHHHHHHHhhhhCCCcEEEecc
Q 025995 14 NYIFMGDFVDR-GYNSLEVFTILLLLKARYPANITLLRG 51 (245)
Q Consensus 14 ~~vflGD~vDR-G~~s~evl~~l~~lk~~~p~~v~~lrG 51 (245)
|++|+||+|.+ |. .-+-++|-.||..|.-.++++-|
T Consensus 2 riLfiGDvvGk~Gr--~~v~~~Lp~lk~kyk~dfvI~N~ 38 (266)
T COG1692 2 RILFIGDVVGKPGR--KAVKEHLPQLKSKYKIDFVIVNG 38 (266)
T ss_pred eEEEEecccCcchH--HHHHHHhHHHHHhhcCcEEEEcC
Confidence 68999999986 33 33445677778777556655544
No 118
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=35.23 E-value=23 Score=32.20 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=34.7
Q ss_pred cccccCCCCCCcEEEeCcccC-CCCCcHHHHH------------HHHHhhhhCCCcEEEeccCcccchh
Q 025995 3 LFQTGGHVPETNYIFMGDFVD-RGYNSLEVFT------------ILLLLKARYPANITLLRGNHESRQL 58 (245)
Q Consensus 3 l~~~~g~~~~~~~vflGD~vD-RG~~s~evl~------------~l~~lk~~~p~~v~~lrGNHE~~~~ 58 (245)
+.++.|-.+-|-++++||+=- |..+-+..+. --+.-...+|---++|=||||.+..
T Consensus 22 ~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsny 90 (456)
T KOG2863|consen 22 LIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASNY 90 (456)
T ss_pred HHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHHHH
Confidence 456677777888999999853 3322222211 1112233456667899999999764
No 119
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.97 E-value=24 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.2
Q ss_pred cccCCCCCcHHHHHHHHHhhhh
Q 025995 20 DFVDRGYNSLEVFTILLLLKAR 41 (245)
Q Consensus 20 D~vDRG~~s~evl~~l~~lk~~ 41 (245)
|++++|-+|+.++.++-.++..
T Consensus 23 NLi~~GLDSiR~M~L~~~wR~~ 44 (74)
T COG3433 23 NLIDYGLDSIRMMALLERWRKR 44 (74)
T ss_pred hHHHhchhHHHHHHHHHHHHHc
Confidence 6889999999999999888754
No 120
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=32.17 E-value=82 Score=26.42 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=25.8
Q ss_pred hCCceEEEeccceeecceEEEecCCceEEEecCCCc
Q 025995 166 INNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNY 201 (245)
Q Consensus 166 ~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y 201 (245)
..|++.||-||.-+..+++. + ++++| +||-=|+
T Consensus 203 ~~G~DvIiG~H~H~~~~~e~-~-~~~~I-~YslGNf 235 (239)
T smart00854 203 DAGADVVIGHHPHVLQPIEI-Y-KGKLI-AYSLGNF 235 (239)
T ss_pred HcCCCEEEcCCCCcCCceEE-E-CCEEE-EEccccc
Confidence 36999999999999999987 5 67665 6665444
No 121
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=31.69 E-value=53 Score=28.39 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=14.4
Q ss_pred HHhhhh-CCceEEEeccceee
Q 025995 161 SEFNHI-NNLDLVCRAHQLVQ 180 (245)
Q Consensus 161 ~~fl~~-~~~~~iIrgH~~~~ 180 (245)
.++.++ -+++.||-||+-..
T Consensus 198 ~~la~~~~giD~IiggH~H~~ 218 (281)
T cd07409 198 KEIARKVPGVDVIVGGHSHTF 218 (281)
T ss_pred HHHHHcCCCCcEEEeCCcCcc
Confidence 344444 48999999998764
No 122
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=30.17 E-value=32 Score=30.00 Aligned_cols=39 Identities=26% Similarity=0.123 Sum_probs=24.4
Q ss_pred CcEEEeCcccCCCCCc-------HHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 13 TNYIFMGDFVDRGYNS-------LEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 13 ~~~vflGD~vDRG~~s-------~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
.-++..||.++.-+.+ .-+++++-.|. .=.+..||||.-
T Consensus 52 ~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mg-----yDa~tlGNHEFd 97 (282)
T cd07407 52 LLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMP-----YDLLTIGNHELY 97 (282)
T ss_pred EEEEeCCCccCCeeceeeecCCChHHHHHHHhcC-----CcEEeecccccC
Confidence 3466699999865433 22344444443 345889999984
No 123
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=29.78 E-value=45 Score=35.13 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=23.2
Q ss_pred EEEeCcccCCCCCc-----HHHHHHHHHhhhhCCCcEEEeccCccc
Q 025995 15 YIFMGDFVDRGYNS-----LEVFTILLLLKARYPANITLLRGNHES 55 (245)
Q Consensus 15 ~vflGD~vDRG~~s-----~evl~~l~~lk~~~p~~v~~lrGNHE~ 55 (245)
++..||+++..+.+ ..+++.+-++. --.+..||||.
T Consensus 695 ~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~GNHEf 735 (1163)
T PRK09419 695 LVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFGNHEF 735 (1163)
T ss_pred EEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEeccccc
Confidence 44489999977644 24455544442 23569999996
No 124
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=29.60 E-value=2.6e+02 Score=24.67 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCCCcEEEeCcccCCCCCcHHHHHHHHHhh-hhCC----CcEEEeccCcccchhhhhcCChHHHHHHhCCchhhhHHHH-
Q 025995 10 VPETNYIFMGDFVDRGYNSLEVFTILLLLK-ARYP----ANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTD- 83 (245)
Q Consensus 10 ~~~~~~vflGD~vDRG~~s~evl~~l~~lk-~~~p----~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~- 83 (245)
+...++|+|||+-=--+..++-|..++..- ..+| .-+++++||-=...+..... ....| .+-++.+.+
T Consensus 25 ~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~----~~~~y--k~~Fd~La~l 98 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRN----FHKVY--IKGFEKLSVM 98 (291)
T ss_pred CCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCC----chHHH--HHHHHHHHHH
Confidence 345679999999644566666666666643 2333 47899999965443321111 11112 122445555
Q ss_pred HHhhcccceeEcCeEEEEeCC
Q 025995 84 VFDYLTLSAIIDGTVLCVHGG 104 (245)
Q Consensus 84 ~~~~LPl~~~i~~~~l~vHgG 104 (245)
.++..|.... .-++++|-|-
T Consensus 99 lls~fp~L~~-~s~fVFVPGp 118 (291)
T PTZ00235 99 LISKFKLILE-HCYLIFIPGI 118 (291)
T ss_pred HHHhChHHHh-cCeEEEECCC
Confidence 4666775433 4568888773
No 125
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=26.95 E-value=90 Score=30.17 Aligned_cols=47 Identities=28% Similarity=0.328 Sum_probs=32.5
Q ss_pred CcEEEeCccc--CCCCCcHHH----HHHHHH-hhhhCCC-cEEEeccCcccchhh
Q 025995 13 TNYIFMGDFV--DRGYNSLEV----FTILLL-LKARYPA-NITLLRGNHESRQLT 59 (245)
Q Consensus 13 ~~~vflGD~v--DRG~~s~ev----l~~l~~-lk~~~p~-~v~~lrGNHE~~~~~ 59 (245)
|-++-.||++ |+++++.+. +..+.. +...+|+ -|+...||||..-.+
T Consensus 212 D~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N 266 (577)
T KOG3770|consen 212 DYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVN 266 (577)
T ss_pred CEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHh
Confidence 4477799999 567766543 333333 3445776 899999999997665
No 126
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=26.80 E-value=4.4e+02 Score=23.81 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=50.6
Q ss_pred CceeeeChHHHHHhhhhCCceEEEe-cccee-ecceEEEecCCceEEEecC--CCcCCcCCCe---EEEEEEcCCCceEE
Q 025995 150 GAGWLFGSRVTSEFNHINNLDLVCR-AHQLV-QEGLKYMFQDKGLVTVWSA--PNYCYRCGNV---ASILSFNENMEREV 222 (245)
Q Consensus 150 g~~~~fg~~~~~~fl~~~~~~~iIr-gH~~~-~~G~~~~~~~~~vitifSa--~~y~~~~~n~---~avl~i~~~~~~~~ 222 (245)
-.++.-|.-+++.+|-.+|+.++-. |-... -.-|..+| . .|.+|||- -.||-.|||+ -+.+.|+++|....
T Consensus 206 ~Vac~TtDfamQNVlLqm~L~l~~~~G~~Ir~~r~~iLRC-h-~Cfsit~~m~k~FCp~CG~~TL~K~aVsv~~dG~~~~ 283 (376)
T KOG2463|consen 206 LVACLTTDFAMQNVLLQMNLNLLAMSGMKIRSVRSYILRC-H-GCFSITSEMPKDFCPSCGHKTLTKCAVSVDEDGNGQT 283 (376)
T ss_pred eeeeecccHHHHHHHHHhcccccCccchhhhhhhhheeEe-e-eeeEecCccchhcccccCCCeeeEEEEEecCCCceeE
Confidence 3456778889999999999988732 11111 12344444 3 37888874 4677777775 35677888988776
Q ss_pred EEEeccc
Q 025995 223 KFFTETE 229 (245)
Q Consensus 223 ~~~~~~~ 229 (245)
.....-+
T Consensus 284 h~k~r~~ 290 (376)
T KOG2463|consen 284 HFKKRFQ 290 (376)
T ss_pred Eeecccc
Confidence 6554433
No 127
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=26.72 E-value=86 Score=24.48 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCCcEEEeCcccCCCCCc-HHHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 11 PETNYIFMGDFVDRGYNS-LEVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s-~evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+-|.+|+.||++++|... .+.+..+.+ .+..++.++||||...
T Consensus 23 ~~D~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 23 EADAVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CCCEEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 347799999999998763 333333322 2346899999999754
No 128
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=26.23 E-value=1.2e+02 Score=23.99 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.6
Q ss_pred CCCcEEEeCcccCCCCCcHHHHHHHHHhh
Q 025995 11 PETNYIFMGDFVDRGYNSLEVFTILLLLK 39 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~s~evl~~l~~lk 39 (245)
++-.+||+|--+|+|.-+-++.++|-.|+
T Consensus 38 ~~yD~i~lG~w~d~G~~d~~~~~fl~~l~ 66 (160)
T PF12641_consen 38 EDYDLIFLGFWIDKGTPDKDMKEFLKKLK 66 (160)
T ss_pred CCCCEEEEEcCccCCCCCHHHHHHHHHcc
Confidence 44569999999999999999999998875
No 129
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=23.87 E-value=1.1e+02 Score=28.75 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=25.6
Q ss_pred HHHHhhhhCCceEEEeccceeecceEEEecCCce
Q 025995 159 VTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGL 192 (245)
Q Consensus 159 ~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~v 192 (245)
.+++.+-+++++..+-||.-.-++...-+ +.++
T Consensus 323 ~LE~l~~~~~VDvvf~GHvH~YER~~piy-n~~~ 355 (452)
T KOG1378|consen 323 GLEPLFVKYKVDVVFWGHVHRYERFCPIY-NNTC 355 (452)
T ss_pred HHHHHHHHhceeEEEeccceehhccchhh-ccee
Confidence 68999999999999999998766654433 4444
No 130
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=23.70 E-value=1.3e+02 Score=25.67 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=44.6
Q ss_pred ChHHHHHhhhhCCceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCCe----EEEEEEcCCCceEEEEEeccccC
Q 025995 156 GSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNV----ASILSFNENMEREVKFFTETEEN 231 (245)
Q Consensus 156 g~~~~~~fl~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n~----~avl~i~~~~~~~~~~~~~~~~~ 231 (245)
....+.+||+.+|... -+|++..||.+.+ ++-+|+||---.... .++. ...-.++.++..-+..+-..+..
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~-g~i~I~l~ri~~~~~-~~~~~~~~~~l~~~d~s~~~lv~a~v~v~~~ 213 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFK-GDIVIELFRIFKVPP-PGQYPPPFDKLKPLDPSGSWLVEASVNVPDG 213 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEE-CCEEEEEEEEEEEET-TCCE---SS-EEECTTTTEEEEEEEEEESTT
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEE-CCEEEEEEEEEecCC-CCCCCCCcccCCccCCCCCEEEEEEEEccCC
Confidence 5667889999999764 5889999999988 887777765322211 1222 24444555555555555555433
No 131
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=23.57 E-value=71 Score=28.26 Aligned_cols=40 Identities=28% Similarity=0.148 Sum_probs=25.7
Q ss_pred CCCcEEEeCcccCCCCC-------------cHHHHHHHHHhhhhCCCcEEEeccCccc
Q 025995 11 PETNYIFMGDFVDRGYN-------------SLEVFTILLLLKARYPANITLLRGNHES 55 (245)
Q Consensus 11 ~~~~~vflGD~vDRG~~-------------s~evl~~l~~lk~~~p~~v~~lrGNHE~ 55 (245)
++.-++.-||.+.-++. ...+++++-++.. =.+..||||.
T Consensus 38 ~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~-----Da~tlGNHEF 90 (313)
T cd08162 38 DNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV-----QAIALGNHEF 90 (313)
T ss_pred CCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC-----cEEecccccc
Confidence 34557789999875442 3345555555543 3478999995
No 132
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=1e+02 Score=25.87 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=36.8
Q ss_pred ccccCCCCCCcEEEeC-----------cccCCC-----CCcHHHHHHHHHhhhhCCCcEEEeccC
Q 025995 4 FQTGGHVPETNYIFMG-----------DFVDRG-----YNSLEVFTILLLLKARYPANITLLRGN 52 (245)
Q Consensus 4 ~~~~g~~~~~~~vflG-----------D~vDRG-----~~s~evl~~l~~lk~~~p~~v~~lrGN 52 (245)
|+..++.++++++.|| |+++.| ..|-+.+.-|+.+....| |++.|.|.
T Consensus 69 l~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~D 132 (231)
T COG1889 69 LKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILED 132 (231)
T ss_pred cccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-Cceeeecc
Confidence 3445666888999998 999988 477788888887766655 89888874
No 133
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=22.67 E-value=1.6e+02 Score=19.40 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=27.1
Q ss_pred cCCCCCCcEEEeCcccCCCCCcHHHHHHHHHhhhhCCCcEEEeccC
Q 025995 7 GGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGN 52 (245)
Q Consensus 7 ~g~~~~~~~vflGD~vDRG~~s~evl~~l~~lk~~~p~~v~~lrGN 52 (245)
.+.++++.+|+..+- |..+..+...|.++- + .+++.+.|-
T Consensus 45 ~~~~~~~~vv~~c~~---~~~a~~~~~~l~~~G--~-~~v~~l~gG 84 (89)
T cd00158 45 LELDKDKPIVVYCRS---GNRSARAAKLLRKAG--G-TNVYNLEGG 84 (89)
T ss_pred hccCCCCeEEEEeCC---CchHHHHHHHHHHhC--c-ccEEEecCC
Confidence 355667777776654 777888877776553 3 278888775
No 134
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=22.18 E-value=1.5e+02 Score=25.33 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=26.3
Q ss_pred CcEEEeCcccCC-CCCc---H-HHHHHHHHhhhhCCCcEEEeccCcccch
Q 025995 13 TNYIFMGDFVDR-GYNS---L-EVFTILLLLKARYPANITLLRGNHESRQ 57 (245)
Q Consensus 13 ~~~vflGD~vDR-G~~s---~-evl~~l~~lk~~~p~~v~~lrGNHE~~~ 57 (245)
+-+|++||+++- |..+ . +.+..+..+.... .++.++||||...
T Consensus 35 d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~GNHD~~~ 82 (294)
T cd00839 35 DAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYV--PYMVTPGNHEADY 82 (294)
T ss_pred cEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcC--CcEEcCccccccc
Confidence 458899999954 4321 1 2223333332234 4889999999864
No 135
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=22.05 E-value=73 Score=30.17 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCcEEEeCcccCCCC------CcHHHHHHHHHhhhhCCCcEEEeccCcccc
Q 025995 12 ETNYIFMGDFVDRGY------NSLEVFTILLLLKARYPANITLLRGNHESR 56 (245)
Q Consensus 12 ~~~~vflGD~vDRG~------~s~evl~~l~~lk~~~p~~v~~lrGNHE~~ 56 (245)
+.-+|-.||+++..+ ....++..+-.|+.. .+..||||.-
T Consensus 70 ~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~yD-----a~tiGNHEFd 115 (517)
T COG0737 70 NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGYD-----AMTLGNHEFD 115 (517)
T ss_pred CeEEEeCCcccCCccccccccCCChHHHHHhhcCCc-----EEeecccccc
Confidence 345677999999833 444567777666533 4788999974
No 136
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.66 E-value=28 Score=27.66 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=27.5
Q ss_pred ChHHHHHhhhhCC---------ceEEEeccceeecceEEEecCCceEEEecCCCcCCcCCC
Q 025995 156 GSRVTSEFNHINN---------LDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGN 207 (245)
Q Consensus 156 g~~~~~~fl~~~~---------~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~y~~~~~n 207 (245)
++...++||.+.| +..=|||+-.++..+.+ + +=+.+|.||.++|.
T Consensus 23 ~p~~~~~fC~kCG~~tI~~Cp~C~~~IrG~y~v~gv~~~---g----~~~~~PsYC~~CGk 76 (158)
T PF10083_consen 23 NPELREKFCSKCGAKTITSCPNCSTPIRGDYHVEGVFGL---G----GHYEAPSYCHNCGK 76 (158)
T ss_pred CchHHHHHHHHhhHHHHHHCcCCCCCCCCceecCCeeee---C----CCCCCChhHHhCCC
Confidence 3455666777665 45558888666443333 1 12458999987764
No 137
>PF05413 Peptidase_C34: Putative closterovirus papain-like endopeptidase; InterPro: IPR008744 RNA-directed RNA polymerase (RdRp) (2.7.7.48 from EC) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage [, ]. It catalyses synthesis of the RNA strand complementary to a given RNA template, but the precise molecular mechanism remains unclear. The postulated RNA replication process is a two-step mechanism. First, the initiation step of RNA synthesis begins at or near the 3' end of the RNA template by means of a primer-independent (de novo) mechanism. The de novo initiation consists in the addition of a nucleotide tri-phosphate (NTP) to the 3'-OH of the first initiating NTP. During the following so-called elongation phase, this nucleotidyl transfer reaction is repeated with subsequent NTPs to generate the complementary RNA product []. All the RNA-directed RNA polymerases, and many DNA-directed polymerases, employ a fold whose organisation has been likened to the shape of a right hand with three subdomains termed fingers, palm and thumb []. Only the catalytic palm subdomain, composed of a four-stranded antiparallel beta-sheet with two alpha-helices, is well conserved among all of these enzymes. In RdRp, the palm subdomain comprises three well conserved motifs (A, B and C). Motif A (D-x(4,5)-D) and motif C (GDD) are spatially juxtaposed; the Asp residues of these motifs are implied in the binding of Mg2+ and/or Mn2+. The Asn residue of motif B is involved in selection of ribonucleoside triphosphates over dNTPs and thus determines whether RNA is synthesised rather than DNA []. The domain organisation [] and the 3D structure of the catalytic centre of a wide range of RdPp's, even those with a low overall sequence homology, are conserved. The catalytic centre is formed by several motifs containing a number of conserved amino acid residues. There are 4 superfamilies of viruses that cover all RNA containing viruses with no DNA stage: Viruses containing positive-strand RNA or double-strand RNA, except retroviruses and Birnaviridae: viral RNA-directed RNA polymerases including all positive-strand RNA viruses with no DNA stage, double-strand RNA viruses, and the Cystoviridae, Reoviridae, Hypoviridae, Partitiviridae, Totiviridae families. Mononegavirales (negative-strand RNA viruses with non-segmented genomes). Negative-strand RNA viruses with segmented genomes, i.e. Orthomyxoviruses (including influenza A, B, and C viruses, Thogotoviruses, and the infectious salmon anemia virus), Arenaviruses, Bunyaviruses, Hantaviruses, Nairoviruses, Phleboviruses, Tenuiviruses and Tospoviruses. Birnaviridae family of dsRNA viruses. The RNA-directed RNA polymerases in the first of the above superfamilies can be divided into the following three subgroups: All positive-strand RNA eukaryotic viruses with no DNA stage. All RNA-containing bacteriophages -there are two families of RNA-containing bacteriophages: Leviviridae (positive ssRNA phages) and Cystoviridae (dsRNA phages). Reoviridae family of dsRNA viruses. This signature is found in the RNA-direct RNA polymerase of apple chlorotic leaf spot virus and cherry mottle virus.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0019079 viral genome replication
Probab=21.58 E-value=43 Score=23.47 Aligned_cols=10 Identities=60% Similarity=0.753 Sum_probs=7.7
Q ss_pred cEEEeccCcc
Q 025995 45 NITLLRGNHE 54 (245)
Q Consensus 45 ~v~~lrGNHE 54 (245)
.-.+|||||=
T Consensus 79 Gr~~LRGNHF 88 (92)
T PF05413_consen 79 GRMLLRGNHF 88 (92)
T ss_pred hheeecccce
Confidence 4568999993
No 138
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=20.20 E-value=1.4e+02 Score=24.80 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=25.0
Q ss_pred hhhCCceEEEeccceeecceEEEecCCceEEEecCCC
Q 025995 164 NHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPN 200 (245)
Q Consensus 164 l~~~~~~~iIrgH~~~~~G~~~~~~~~~vitifSa~~ 200 (245)
+-..|++.||-||.-+..+++. + +++ +-+||-=|
T Consensus 203 l~~~G~D~IiG~H~Hv~q~~E~-~-~~~-~I~YSlGN 236 (239)
T cd07381 203 LIDAGADLVIGHHPHVLQGIEI-Y-KGK-LIFYSLGN 236 (239)
T ss_pred HHHCCCCEEEcCCCCcCCCeEE-E-CCE-EEEEcCCC
Confidence 3346999999999999999988 5 555 44566433
Done!