Query 025996
Match_columns 245
No_of_seqs 333 out of 2302
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02709 nudix hydrolase 100.0 1.1E-39 2.4E-44 277.9 24.3 180 50-229 30-214 (222)
2 PRK10707 putative NUDIX hydrol 100.0 1.3E-33 2.7E-38 237.4 22.1 185 9-218 4-188 (190)
3 cd03426 CoAse Coenzyme A pyrop 100.0 2.5E-30 5.4E-35 211.1 17.6 156 52-214 1-157 (157)
4 KOG3069 Peroxisomal NUDIX hydr 100.0 6.9E-30 1.5E-34 215.4 8.9 182 50-231 40-224 (246)
5 cd04692 Nudix_Hydrolase_33 Mem 99.8 1.6E-19 3.5E-24 144.9 11.8 119 53-173 2-128 (144)
6 cd04679 Nudix_Hydrolase_20 Mem 99.8 5.7E-19 1.2E-23 137.9 13.3 111 53-171 2-114 (125)
7 cd04697 Nudix_Hydrolase_38 Mem 99.8 7.3E-19 1.6E-23 138.0 12.2 110 55-172 2-112 (126)
8 cd04681 Nudix_Hydrolase_22 Mem 99.8 9.4E-19 2E-23 137.3 12.2 108 54-170 2-113 (130)
9 cd04691 Nudix_Hydrolase_32 Mem 99.8 1.8E-18 3.8E-23 134.2 12.7 98 69-173 12-109 (117)
10 cd04682 Nudix_Hydrolase_23 Mem 99.8 1.4E-18 3.1E-23 135.3 11.6 101 69-174 13-116 (122)
11 cd03430 GDPMH GDP-mannose glyc 99.8 5.7E-18 1.2E-22 136.2 12.8 111 53-172 12-132 (144)
12 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 4.4E-18 9.4E-23 134.8 11.8 114 54-173 3-116 (137)
13 cd04693 Nudix_Hydrolase_34 Mem 99.8 3.1E-18 6.7E-23 134.2 10.7 110 55-173 2-114 (127)
14 cd04683 Nudix_Hydrolase_24 Mem 99.8 8.9E-18 1.9E-22 130.0 12.9 110 55-172 2-114 (120)
15 PRK15434 GDP-mannose mannosyl 99.8 9.3E-18 2E-22 137.4 12.8 113 53-174 17-139 (159)
16 PRK15472 nucleoside triphospha 99.8 9.5E-18 2.1E-22 133.9 12.4 113 55-173 5-126 (141)
17 cd04670 Nudix_Hydrolase_12 Mem 99.8 1.3E-17 2.8E-22 130.6 12.8 112 54-173 3-114 (127)
18 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.4E-17 3.1E-22 130.5 12.3 114 53-172 2-117 (129)
19 PLN02325 nudix hydrolase 99.8 3E-17 6.4E-22 132.2 14.4 113 53-172 9-125 (144)
20 cd03671 Ap4A_hydrolase_plant_l 99.8 2E-17 4.4E-22 133.2 13.3 111 54-172 4-131 (147)
21 cd03676 Nudix_hydrolase_3 Memb 99.7 1.1E-17 2.3E-22 139.3 11.9 122 48-172 27-158 (180)
22 cd03429 NADH_pyrophosphatase N 99.7 9.7E-18 2.1E-22 132.7 11.1 106 55-172 2-107 (131)
23 cd04694 Nudix_Hydrolase_35 Mem 99.7 1.7E-17 3.7E-22 133.5 12.6 115 54-172 2-131 (143)
24 cd03673 Ap6A_hydrolase Diadeno 99.7 1.7E-17 3.8E-22 129.6 11.8 110 54-172 3-116 (131)
25 cd04673 Nudix_Hydrolase_15 Mem 99.7 2E-17 4.4E-22 127.8 11.8 109 55-174 2-116 (122)
26 PRK15393 NUDIX hydrolase YfcD; 99.7 2.3E-17 5E-22 137.6 12.8 115 50-172 34-149 (180)
27 cd04700 DR1025_like DR1025 fro 99.7 3.1E-17 6.7E-22 131.6 12.7 113 54-174 14-127 (142)
28 cd04680 Nudix_Hydrolase_21 Mem 99.7 3.2E-17 6.9E-22 126.5 12.2 106 55-172 2-108 (120)
29 cd04664 Nudix_Hydrolase_7 Memb 99.7 2.5E-17 5.4E-22 129.2 11.8 109 56-172 4-118 (129)
30 cd04684 Nudix_Hydrolase_25 Con 99.7 3.5E-17 7.5E-22 127.4 12.0 110 56-173 3-118 (128)
31 TIGR02150 IPP_isom_1 isopenten 99.7 2E-17 4.4E-22 135.1 10.8 114 50-173 24-143 (158)
32 cd02885 IPP_Isomerase Isopente 99.7 2.2E-17 4.7E-22 135.7 10.5 114 52-173 29-149 (165)
33 cd03428 Ap4A_hydrolase_human_l 99.7 3.6E-17 7.8E-22 128.2 10.6 110 53-173 3-116 (130)
34 cd04671 Nudix_Hydrolase_13 Mem 99.7 1.1E-16 2.3E-21 125.6 13.0 104 56-169 3-107 (123)
35 PF00293 NUDIX: NUDIX domain; 99.7 1.7E-17 3.6E-22 129.5 8.2 116 53-173 2-120 (134)
36 COG1051 ADP-ribose pyrophospha 99.7 1.1E-16 2.5E-21 129.1 12.8 113 52-172 9-122 (145)
37 cd04696 Nudix_Hydrolase_37 Mem 99.7 1E-16 2.2E-21 125.2 12.1 107 55-173 4-115 (125)
38 cd04677 Nudix_Hydrolase_18 Mem 99.7 1.3E-16 2.7E-21 125.3 12.2 108 53-172 7-122 (132)
39 PRK03759 isopentenyl-diphospha 99.7 1.1E-16 2.4E-21 133.8 12.5 116 50-173 31-153 (184)
40 cd04695 Nudix_Hydrolase_36 Mem 99.7 3.9E-17 8.4E-22 128.9 9.0 100 68-174 14-116 (131)
41 PRK11762 nudE adenosine nucleo 99.7 1.7E-16 3.7E-21 132.8 13.3 113 53-172 47-159 (185)
42 cd03674 Nudix_Hydrolase_1 Memb 99.7 1.6E-16 3.4E-21 126.6 11.5 110 53-172 2-123 (138)
43 cd03675 Nudix_Hydrolase_2 Cont 99.7 2.5E-16 5.5E-21 124.2 12.3 99 69-173 12-112 (134)
44 PRK10776 nucleoside triphospha 99.7 3.8E-16 8.2E-21 121.5 12.9 100 64-172 14-113 (129)
45 cd03427 MTH1 MutT homolog-1 (M 99.7 2.2E-16 4.7E-21 124.9 11.7 97 69-172 13-111 (137)
46 cd04699 Nudix_Hydrolase_39 Mem 99.7 2.5E-16 5.5E-21 122.6 11.2 108 55-170 3-112 (129)
47 PRK09438 nudB dihydroneopterin 99.7 2.4E-16 5.3E-21 126.8 11.3 108 53-172 7-129 (148)
48 cd04689 Nudix_Hydrolase_30 Mem 99.7 5.5E-16 1.2E-20 121.0 12.9 96 69-170 13-112 (125)
49 PRK10546 pyrimidine (deoxy)nuc 99.7 5.7E-16 1.2E-20 122.2 13.1 97 69-172 16-112 (135)
50 cd03672 Dcp2p mRNA decapping e 99.7 3.3E-16 7.2E-21 126.3 11.2 107 58-174 6-113 (145)
51 cd04666 Nudix_Hydrolase_9 Memb 99.7 6.2E-16 1.3E-20 121.1 12.4 100 65-173 12-116 (122)
52 PRK00714 RNA pyrophosphohydrol 99.7 6.9E-16 1.5E-20 125.8 12.8 113 52-172 7-135 (156)
53 cd04690 Nudix_Hydrolase_31 Mem 99.7 9.3E-16 2E-20 118.2 12.6 100 58-171 5-109 (118)
54 cd04687 Nudix_Hydrolase_28 Mem 99.7 1.2E-15 2.6E-20 119.6 13.1 101 69-174 13-123 (128)
55 cd04669 Nudix_Hydrolase_11 Mem 99.7 1.2E-15 2.6E-20 118.9 11.8 96 69-173 13-115 (121)
56 cd04672 Nudix_Hydrolase_14 Mem 99.7 2.3E-15 4.9E-20 117.3 13.2 106 54-173 3-113 (123)
57 cd03425 MutT_pyrophosphohydrol 99.6 2.1E-15 4.5E-20 115.9 11.9 97 69-172 14-110 (124)
58 cd04688 Nudix_Hydrolase_29 Mem 99.6 1.9E-15 4.1E-20 118.1 11.8 99 69-173 13-119 (126)
59 cd04667 Nudix_Hydrolase_10 Mem 99.6 2.8E-15 6E-20 115.0 12.2 91 69-173 12-102 (112)
60 TIGR00586 mutt mutator mutT pr 99.6 4.1E-15 8.9E-20 115.9 13.1 97 69-172 17-113 (128)
61 cd04676 Nudix_Hydrolase_17 Mem 99.6 2.9E-15 6.2E-20 116.2 12.0 107 54-172 3-117 (129)
62 cd04662 Nudix_Hydrolase_5 Memb 99.6 5.1E-15 1.1E-19 116.4 13.1 100 64-166 11-126 (126)
63 cd04511 Nudix_Hydrolase_4 Memb 99.6 5.5E-15 1.2E-19 116.4 12.5 105 53-170 13-117 (130)
64 cd04686 Nudix_Hydrolase_27 Mem 99.6 4.7E-15 1E-19 117.2 11.6 107 56-173 3-120 (131)
65 PRK00241 nudC NADH pyrophospha 99.6 3.2E-15 7E-20 131.2 11.6 106 54-172 133-238 (256)
66 TIGR00052 nudix-type nucleosid 99.6 3E-15 6.5E-20 125.4 10.3 115 55-172 46-165 (185)
67 cd02883 Nudix_Hydrolase Nudix 99.6 1.2E-14 2.6E-19 110.6 11.8 108 56-172 3-112 (123)
68 PLN02791 Nudix hydrolase homol 99.6 9.5E-15 2.1E-19 143.8 12.7 119 50-171 29-157 (770)
69 PRK10729 nudF ADP-ribose pyrop 99.6 2.1E-14 4.5E-19 122.0 11.9 114 55-172 51-171 (202)
70 PRK05379 bifunctional nicotina 99.6 3E-14 6.5E-19 129.9 13.4 111 54-172 204-322 (340)
71 PLN02552 isopentenyl-diphospha 99.6 3.7E-14 8E-19 123.5 12.2 120 49-172 52-203 (247)
72 cd04685 Nudix_Hydrolase_26 Mem 99.5 5.5E-14 1.2E-18 111.7 10.9 113 56-172 3-123 (133)
73 cd04661 MRP_L46 Mitochondrial 99.5 6.9E-14 1.5E-18 110.7 9.7 94 69-171 14-119 (132)
74 PRK15009 GDP-mannose pyrophosp 99.5 1.6E-13 3.5E-18 115.5 11.7 113 55-172 47-166 (191)
75 cd04665 Nudix_Hydrolase_8 Memb 99.5 3.4E-13 7.3E-18 105.2 12.0 100 56-169 3-102 (118)
76 cd04674 Nudix_Hydrolase_16 Mem 99.5 7.1E-13 1.5E-17 103.3 13.5 45 70-117 17-61 (118)
77 PRK08999 hypothetical protein; 99.5 3E-13 6.6E-18 121.5 12.7 98 69-173 18-115 (312)
78 cd04663 Nudix_Hydrolase_6 Memb 99.5 1.2E-12 2.5E-17 103.2 12.6 100 65-171 11-115 (126)
79 TIGR02705 nudix_YtkD nucleosid 99.5 9.3E-13 2E-17 107.3 11.7 91 69-172 36-127 (156)
80 PLN03143 nudix hydrolase; Prov 99.4 2.3E-12 5E-17 114.6 12.1 53 65-118 140-192 (291)
81 cd03670 ADPRase_NUDT9 ADP-ribo 99.4 7.8E-12 1.7E-16 104.6 12.3 46 65-116 46-91 (186)
82 COG0494 MutT NTP pyrophosphohy 99.4 8.8E-12 1.9E-16 96.9 11.1 112 55-173 13-135 (161)
83 KOG3041 Nucleoside diphosphate 99.4 8.1E-12 1.8E-16 103.4 11.0 117 54-172 74-194 (225)
84 PLN02839 nudix hydrolase 99.3 9.7E-12 2.1E-16 112.8 11.4 161 8-172 151-327 (372)
85 COG2816 NPY1 NTP pyrophosphohy 99.3 5.4E-12 1.2E-16 110.6 6.0 106 54-172 145-250 (279)
86 KOG3084 NADH pyrophosphatase I 99.2 2.6E-12 5.6E-17 113.3 1.2 110 54-172 188-298 (345)
87 KOG2839 Diadenosine and diphos 99.1 2.4E-10 5.2E-15 90.6 7.8 117 50-172 7-125 (145)
88 COG1443 Idi Isopentenyldiphosp 99.1 1.4E-10 3.1E-15 94.5 5.7 115 53-174 33-155 (185)
89 cd03431 DNA_Glycosylase_C DNA 99.0 3.5E-09 7.6E-14 80.8 11.0 91 69-172 15-105 (118)
90 KOG0648 Predicted NUDIX hydrol 98.8 2.8E-09 6E-14 94.1 3.7 126 44-174 106-233 (295)
91 KOG4313 Thiamine pyrophosphoki 98.5 1.7E-07 3.6E-12 80.5 6.3 128 44-172 122-258 (306)
92 COG4119 Predicted NTP pyrophos 98.5 7.2E-07 1.6E-11 69.4 8.8 58 59-117 9-68 (161)
93 PF14815 NUDIX_4: NUDIX domain 98.4 3.8E-07 8.3E-12 70.0 4.5 100 60-172 4-103 (114)
94 KOG0142 Isopentenyl pyrophosph 98.1 5.5E-06 1.2E-10 69.2 5.0 118 50-172 49-183 (225)
95 KOG4195 Transient receptor pot 97.6 9.5E-05 2E-09 62.8 5.7 40 68-113 139-178 (275)
96 PRK10880 adenine DNA glycosyla 96.7 0.009 2E-07 54.9 8.6 89 69-172 243-331 (350)
97 COG4112 Predicted phosphoester 96.4 0.054 1.2E-06 44.2 10.2 102 69-171 73-186 (203)
98 PF13869 NUDIX_2: Nucleotide h 95.7 0.036 7.8E-07 46.5 6.7 59 50-116 41-99 (188)
99 KOG2937 Decapping enzyme compl 95.6 0.0046 9.9E-08 55.6 1.1 97 69-174 96-194 (348)
100 KOG4432 Uncharacterized NUDIX 94.4 0.17 3.6E-06 45.3 7.3 85 86-171 286-375 (405)
101 KOG1689 mRNA cleavage factor I 90.7 0.69 1.5E-05 38.1 5.6 57 50-114 67-123 (221)
102 PRK13910 DNA glycosylase MutY; 90.5 1.3 2.7E-05 39.9 7.7 71 69-172 198-268 (289)
103 PF14443 DBC1: DBC1 87.6 0.81 1.8E-05 35.9 3.8 51 68-118 8-60 (126)
104 TIGR01084 mutY A/G-specific ad 87.4 2 4.3E-05 38.3 6.7 21 69-90 240-260 (275)
105 KOG4432 Uncharacterized NUDIX 85.4 0.99 2.1E-05 40.5 3.6 59 86-145 81-141 (405)
106 COG1194 MutY A/G-specific DNA 84.7 1.8 3.9E-05 39.6 5.1 82 64-171 245-326 (342)
107 PF03487 IL13: Interleukin-13; 63.0 7.4 0.00016 24.2 2.1 23 89-112 14-36 (43)
108 KOG1202 Animal-type fatty acid 43.4 20 0.00044 38.5 2.9 31 86-123 270-300 (2376)
109 KOG4548 Mitochondrial ribosoma 35.7 64 0.0014 28.4 4.4 44 69-116 140-184 (263)
110 COG4111 Uncharacterized conser 22.5 1.3E+02 0.0028 26.8 4.0 53 65-127 34-87 (322)
111 PF07026 DUF1317: Protein of u 21.0 70 0.0015 21.7 1.6 22 85-110 23-44 (60)
No 1
>PLN02709 nudix hydrolase
Probab=100.00 E-value=1.1e-39 Score=277.93 Aligned_cols=180 Identities=63% Similarity=1.045 Sum_probs=156.8
Q ss_pred CCCceEEEEEEEEcC---CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeC
Q 025996 50 TKKRAAVLVCLFEGN---DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILD 126 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~---~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~ 126 (245)
..|+|||+|+|+... +++++|||++|+..+++|+|+|+||||++|++|+++.+||+||++||+||+...++++|.++
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~ 109 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLE 109 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecC
Confidence 467899999998632 35789999999999989999999999999998878999999999999999999999999999
Q ss_pred CcccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEeecC--CCceEEe
Q 025996 127 PIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAE--GNKYVIW 204 (245)
Q Consensus 127 ~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iW 204 (245)
.+.+.+++.|+||++.+.....+...+|++||++++|+|+++|+++.++......+.|..+.+++|.+..+ ..++.||
T Consensus 110 ~~~t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~IW 189 (222)
T PLN02709 110 PFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIW 189 (222)
T ss_pred CeECCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCcccceEEEEeCCceEEEEEEEEeccCCCCCCEEE
Confidence 98888899999999999754345556899999999999999999999887777778888888898887321 1368999
Q ss_pred chhHHHHHHHHHHHhCCCCCccccC
Q 025996 205 ALTAGILINVASVVHQCPPAFQERR 229 (245)
Q Consensus 205 G~Ta~il~~~~~~~~~~~p~~~~~~ 229 (245)
|+||+||..++.+++++.|+|....
T Consensus 190 G~TA~IL~~l~~~~~~~~~~~~~~~ 214 (222)
T PLN02709 190 ALTAGILIRVASIVYQRLPEFQERK 214 (222)
T ss_pred cHHHHHHHHHHHHHhccCCCccccc
Confidence 9999999999999999999985443
No 2
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=100.00 E-value=1.3e-33 Score=237.40 Aligned_cols=185 Identities=33% Similarity=0.523 Sum_probs=150.6
Q ss_pred CchhHHHHHHHHhhcCCCCCCCccccccccccCccccccCCCCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC
Q 025996 9 RSERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL 88 (245)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f 88 (245)
++.++..++++++...+..... ....+.+||++++.... +..||+++|+...+.++|+|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~aavvl~l~~~~--~~~vLl~~R~~~~r~~~G~~~~ 64 (190)
T PRK10707 4 RSLTLDDFLSRFQLQRPQPNRE-----------------TLNQRQAAVLIPIVRRP--QPTLLLTQRSIHLRKHAGQVAF 64 (190)
T ss_pred cccCHHHHHHHHhcCCCccccc-----------------cccCCCeEEEEEEEECC--CCEEEEEEeCCcccCCCCcEEc
Confidence 4567788888875533221111 11456788888887532 3489999999988889999999
Q ss_pred CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccc
Q 025996 89 PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEM 168 (245)
Q Consensus 89 PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~e 168 (245)
|||++|++|+++++||+||++||||+++..+++++.+.+..+..++.++++++.+.... ...+|++|+.+++|+|+++
T Consensus 65 PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~~~~~v~~~~~~~--~~~~d~~Ev~~v~~vpl~e 142 (190)
T PRK10707 65 PGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQVTPVVGIIPPDL--PYRANEDEVAAVFEMPLAE 142 (190)
T ss_pred CCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcEEEEEEEEECCCC--CCCCChhhhheEEEEeHHH
Confidence 99999997658999999999999999999999999998777777889999999887643 3457889999999999999
Q ss_pred ccccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechhHHHHHHHHHHH
Q 025996 169 FLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVV 218 (245)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~Ta~il~~~~~~~ 218 (245)
+.+...+......+.|..+.+++|.+ +++.|||+||+||.+++..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iWG~Ta~il~~~~~~~ 188 (190)
T PRK10707 143 ALHLGRYHPLDIYRRGQSHRVWLSWY----EQYFVWGMTAGIIRELALQI 188 (190)
T ss_pred HhCcccceeEEEeeCCcEEEEEEEEe----CCcEEEhHHHHHHHHHHHHh
Confidence 99988777666677788888899988 47899999999999998875
No 3
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.97 E-value=2.5e-30 Score=211.06 Aligned_cols=156 Identities=46% Similarity=0.760 Sum_probs=124.4
Q ss_pred CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCC-CCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc
Q 025996 52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLDPSLVNVVTILDPIFT 130 (245)
Q Consensus 52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~g-E~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~ 130 (245)
|++||+|++++. +++.+|||+||+..+..++|.|+||||++|+| | ++.+||+||++||||+++..+.+++.+.....
T Consensus 1 ~~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdE-s~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~ 78 (157)
T cd03426 1 RRAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDE-DPVATALREAEEEIGLPPDSVEVLGRLPPYYT 78 (157)
T ss_pred CceEEEEEEEeC-CCceEEEEEEcccccccCCCcEECCCCCcCCCcC-CHHHHHHHHHHHHhCCCccceEEEEECCCccc
Confidence 478999988873 44569999999998767999999999999999 8 99999999999999999998888988876665
Q ss_pred CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechhHHH
Q 025996 131 KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGI 210 (245)
Q Consensus 131 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~Ta~i 210 (245)
..+..++.|++.+... ....++++|+.++.|+|++++.+..+.....+.+.+ ....+++.++. ...+|||+||+|
T Consensus 79 ~~~~~v~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~iwg~t~~i 153 (157)
T cd03426 79 RSGFVVTPVVGLVPPP--LPLVLNPDEVAEVFEVPLSFLLDPANPRTTRRHGRG-GLTFPAFALPG--EGYVIWGLTARI 153 (157)
T ss_pred cCCCEEEEEEEEECCC--CCCCCCHHHhheeEEEcHHHHhCcCCceEEEEEeCC-ceEEEEEEecC--CCcEEEhHHHHH
Confidence 5567788888877653 234678889999999999999998766544444444 12244555542 368999999999
Q ss_pred HHHH
Q 025996 211 LINV 214 (245)
Q Consensus 211 l~~~ 214 (245)
|.++
T Consensus 154 ~~~~ 157 (157)
T cd03426 154 LSEL 157 (157)
T ss_pred HhhC
Confidence 9874
No 4
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.96 E-value=6.9e-30 Score=215.43 Aligned_cols=182 Identities=37% Similarity=0.562 Sum_probs=145.1
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF 129 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~ 129 (245)
..+.+||+|+|+...++++.|||+||+.+++.|+|+++||||++|+.|.+..+||+||+.||+|+++..+++++.++++.
T Consensus 40 ~~~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~ 119 (246)
T KOG3069|consen 40 PNRKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFV 119 (246)
T ss_pred CCCCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhcccee
Confidence 56789999999986577899999999999999999999999999999989999999999999999999999999999998
Q ss_pred cCCceEEEEEEEEeCCCCC-CCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEee--cCCCceEEech
Q 025996 130 TKNGIIVVPVIGILPDRNS-FIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYE--AEGNKYVIWAL 206 (245)
Q Consensus 130 ~~~~~~v~~~v~~~~~~~~-~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iWG~ 206 (245)
...+..|.|+++.+....- ....+|++||.+++|||+++|+.+...+.......+......++.+- .......+||+
T Consensus 120 ~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~i 199 (246)
T KOG3069|consen 120 LRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPKHQTAFQISRSYYRTYFFFIEYFFIWGVTNLFLWGI 199 (246)
T ss_pred eccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhhhhcchHHHHhhhhhccchhhheeehhccCcchhhHHH
Confidence 8788999999998876421 45678999999999999999999887664332222222211112211 11235699999
Q ss_pred hHHHHHHHHHHHhCCCCCccccCCC
Q 025996 207 TAGILINVASVVHQCPPAFQERRPK 231 (245)
Q Consensus 207 Ta~il~~~~~~~~~~~p~~~~~~~~ 231 (245)
|+.||-.+...+++.-+++.....+
T Consensus 200 T~~Il~~~~~~l~~~l~~~~~~~~~ 224 (246)
T KOG3069|consen 200 THGILGDLPNFLSPSLLTSLPYFQK 224 (246)
T ss_pred HHHHHhcchhhcCchhhhccccccc
Confidence 9999999988888766655444333
No 5
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=1.6e-19 Score=144.87 Aligned_cols=119 Identities=19% Similarity=0.168 Sum_probs=88.4
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCcc
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIF 129 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~ 129 (245)
+.+|.+.|++..+++.+||+++|+..+..+||.|++ |||++++|| ++++||+||++|||||.+. .+..++.+...+
T Consensus 2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gE-t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~ 80 (144)
T cd04692 2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGE-TPLEDGIRELEEELGLDVSADDLIPLGTFKIEY 80 (144)
T ss_pred ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCC-CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence 567888888865555699999999987789999999 599999999 9999999999999999764 455666664433
Q ss_pred c-C----CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 130 T-K----NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 130 ~-~----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
. . .....+.|++..... ...+.++++|+.++.|+|++++.+.-
T Consensus 81 ~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 81 DHIGKLIDREFHHVYLYELKVP-LEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred cccCCCccceEEEEEEEeccCC-hhhcCCChhHhheEEEECHHHHHHHH
Confidence 2 1 122334555555431 12335677899999999999987643
No 6
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=5.7e-19 Score=137.89 Aligned_cols=111 Identities=18% Similarity=0.259 Sum_probs=82.1
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK- 131 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~- 131 (245)
+.+|.+++++ .++ +|||++|... ..+|.|++|||++|+|| ++.+||+||++||||+.+...++++........
T Consensus 2 ~~~~~~~i~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 75 (125)
T cd04679 2 RVGCGAAILR-DDG--KLLLVKRLRA--PEAGHWGIPGGKVDWME-AVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEP 75 (125)
T ss_pred ceEEEEEEEC-CCC--EEEEEEecCC--CCCCeEeCCeeeccCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeecccCC
Confidence 3456666665 345 8999999864 45799999999999999 999999999999999999888888877654432
Q ss_pred -CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996 132 -NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171 (245)
Q Consensus 132 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~ 171 (245)
.......|++...... ....+++|+.++.|++++++.+
T Consensus 76 ~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~ 114 (125)
T cd04679 76 PQHWVAPVYLAENFSGE--PRLMEPDKLLELGWFALDALPQ 114 (125)
T ss_pred CCeEEEEEEEEeecCCc--cccCCCccccEEEEeCHHHCCc
Confidence 2233334555544321 1124567999999999999875
No 7
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=7.3e-19 Score=137.96 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=84.1
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG 133 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 133 (245)
|+.+++++ .+| +|||++|+..+..++|.|++ |||++++|| ++.+||+||++||||+++..+..++.+........
T Consensus 2 ~~~v~i~~-~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE-~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~ 77 (126)
T cd04697 2 ATYIFVFN-SEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAGE-SYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNR 77 (126)
T ss_pred eEEEEEEc-CCC--eEEEEECCCCCCCCCCcccCcCCcccCCCC-CHHHHHHHHHHHHHCCCccccEEeeEEEecCCCce
Confidence 46666676 456 89999999887678999999 699999999 99999999999999999988887777644322223
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
...+.|.+.... ...++++|+.++.|++++++.+.
T Consensus 78 ~~~~~f~~~~~~----~~~~~~~E~~~~~w~~~~el~~~ 112 (126)
T cd04697 78 VWGKVFSCVYDG----PLKLQEEEVEEITWLSINEILQF 112 (126)
T ss_pred EEEEEEEEEECC----CCCCCHhHhhheEEcCHHHHHHH
Confidence 333445444432 23467789999999999999763
No 8
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=9.4e-19 Score=137.31 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=82.3
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG 133 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 133 (245)
+||.+++++ .++ +|||++|... .++|.|+||||+++.|| ++.+||+||++||||+++..+.+++.+...+...+
T Consensus 2 ~av~~~i~~-~~~--~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 75 (130)
T cd04681 2 AAVGVLILN-EDG--ELLVVRRARE--PGKGTLDLPGGFVDPGE-SAEEALIREIREETGLKVTELSYLFSLPNTYPYGG 75 (130)
T ss_pred ceEEEEEEc-CCC--cEEEEEecCC--CCCCcEeCCceeecCCC-CHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC
Confidence 577777776 455 8999999875 46899999999999999 99999999999999999988888887654333222
Q ss_pred eE----EEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996 134 II----VVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL 170 (245)
Q Consensus 134 ~~----v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~ 170 (245)
.. ...|++.+... ....+.+|+.++.|+|++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 76 MEYDTLDLFFVCQVDDK---PIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred ceeEEEEEEEEEEeCCC---CCcCChHHhheeEEecHHHCC
Confidence 21 12355555432 234567899999999999984
No 9
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.8e-18 Score=134.15 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=76.3
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
+|||+||+.....++|.|+||||++|+|| ++.+||+||++||||+++..+..++.+..... ....++.|.+.....
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~-- 87 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGE-SQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYYVVTFWQG-- 87 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEEEEEEecC--
Confidence 89999998876568999999999999999 99999999999999999877777776654333 334455555544321
Q ss_pred CCCCCCcccceeEEEEccccccccC
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.++.+|+.++.|+|++++....
T Consensus 88 ---~~~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 88 ---EIPAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred ---CCCcccccccEEcCHHHcchhh
Confidence 1244899999999999987543
No 10
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.4e-18 Score=135.27 Aligned_cols=101 Identities=26% Similarity=0.245 Sum_probs=75.5
Q ss_pred EEEEEEeCCC-CCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce--EEEEeCCcccCCceEEEEEEEEeCC
Q 025996 69 RVFLTKRSSN-LSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVN--VVTILDPIFTKNGIIVVPVIGILPD 145 (245)
Q Consensus 69 ~vLL~rR~~~-~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~--~lg~l~~~~~~~~~~v~~~v~~~~~ 145 (245)
+|||++|+.. ...++|.|+||||+++.|| ++++||.||++||||+++.... ....+.. .......+.|++....
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~ 89 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGE-TPLECVLRELLEEIGLTLPESRIPWFRVYPS--ASPPGTEHVFVVPLTA 89 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCC-CHHHHHHHHHHHHhCCcccccccceeEeccc--CCCCceEEEEEEEEec
Confidence 8999999886 5578999999999999999 9999999999999999875332 2222221 1223345556655543
Q ss_pred CCCCCCCCCcccceeEEEEccccccccCC
Q 025996 146 RNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 146 ~~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
.. ....+.+|+.++.|++++++.+..+
T Consensus 90 ~~--~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 90 RE--DAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred CC--CccccCchhheeecccHHHHhhccc
Confidence 22 2346779999999999999987654
No 11
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.77 E-value=5.7e-18 Score=136.24 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=81.8
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc--eEEEEeCCccc
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV--NVVTILDPIFT 130 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~--~~lg~l~~~~~ 130 (245)
..+|.+++++ .+| +|||+||... +++|.|+||||++|.|| |+.+||+||++||||+.+... .+++.+...+.
T Consensus 12 ~v~v~~vI~~-~~g--~vLl~~R~~~--p~~g~w~lPGG~ve~gE-s~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~ 85 (144)
T cd03430 12 LVSIDLIVEN-EDG--QYLLGKRTNR--PAQGYWFVPGGRIRKNE-TLTEAFERIAKDELGLEFLISDAELLGVFEHFYD 85 (144)
T ss_pred eEEEEEEEEe-CCC--eEEEEEccCC--CCCCcEECCCceecCCC-CHHHHHHHHHHHHHCCCcccccceEEEEEEEEec
Confidence 4567776776 356 8999999864 67899999999999999 999999999999999988755 66666543221
Q ss_pred ------C--CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 131 ------K--NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 131 ------~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
. ..+....|.+..... .....++|+.++.|++++++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 86 DNFFGDDFSTHYVVLGYVLKLSSN---ELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred cccccCCCccEEEEEEEEEEEcCC---cccCCchhccEeEEecHHHHhcC
Confidence 1 122333455555432 22456789999999999999864
No 12
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.77 E-value=4.4e-18 Score=134.80 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=85.2
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG 133 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 133 (245)
.+|.+++++ .++ ++||++|.... ..++.|+||||++|.|| ++.+||+||++||||+....+..++.+........
T Consensus 3 ~~v~v~~~~-~~~--~iLl~~~~~~~-~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd03424 3 DAVAVLPYD-DDG--KVVLVRQYRPP-VGGWLLELPAGLIDPGE-DPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSD 77 (137)
T ss_pred CEEEEEEEc-CCC--eEEEEEeeecC-CCCEEEEeCCccCCCCC-CHHHHHHHHHHHHHCCCccceEEEeeEecCCcccC
Confidence 456666665 345 78998876542 45789999999999999 99999999999999999988887777644333334
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
..++.|++...... .....+++|+.++.|++++++.+.-
T Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 78 ERIHLFLAEDLSPG-EEGLLDEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred ccEEEEEEEccccc-ccCCCCCCCeeEEEEecHHHHHHHH
Confidence 45667777665432 1135677899999999999998653
No 13
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.1e-18 Score=134.20 Aligned_cols=110 Identities=24% Similarity=0.206 Sum_probs=77.0
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCc--ceEEEEeCCcccC
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSL--VNVVTILDPIFTK 131 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~--~~~lg~l~~~~~~ 131 (245)
+|.+++++ .+| +|||++|+..+..++|.|+|| ||+++.|| ++ +||+||++||||+++.. +..++.+.....
T Consensus 2 ~v~v~~~~-~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE-~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~- 75 (127)
T cd04693 2 VVHVCIFN-SKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAGE-TS-TAAEREVKEELGLELDFSELRPLFRYFFEAE- 75 (127)
T ss_pred eEEEEEEe-CCC--eEEEEEccCCCCCCCCcccccCCCcCCCCC-CH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC-
Confidence 45666666 355 899999998776789999998 99999999 89 99999999999998763 333444322111
Q ss_pred CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
+.....+ +..... .....++++|+.++.|++++++.+.-
T Consensus 76 -~~~~~~~-~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04693 76 -GFDDYYL-FYADVE-IGKLILQKEEVDEVKFVSKDEIDGLI 114 (127)
T ss_pred -CeEEEEE-EEecCc-ccccccCHHHhhhEEEeCHHHHHHHH
Confidence 2222212 222211 22345677899999999999997754
No 14
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=8.9e-18 Score=129.96 Aligned_cols=110 Identities=25% Similarity=0.274 Sum_probs=77.0
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCcccC-
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIFTK- 131 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~~~- 131 (245)
+|.+++.. +| +|||+||... +.++|.|+||||++++|| ++.+||+||++||||+.+. .+.+++.+......
T Consensus 2 ~v~~vi~~--~~--~vLL~~r~~~-~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 75 (120)
T cd04683 2 AVYVLLRR--DD--EVLLQRRANT-GYMDGQWALPAGHLEKGE-DAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI 75 (120)
T ss_pred cEEEEEEE--CC--EEEEEEccCC-CCCCCeEeCCccccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC
Confidence 45555554 45 8999999865 356899999999999999 9999999999999999876 56666665443322
Q ss_pred CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.......|.+..... . ....+++|+.++.|+|++++...
T Consensus 76 ~~~~~~~f~~~~~~~-~-~~~~~~~e~~~~~W~~~~~l~~~ 114 (120)
T cd04683 76 ESRIGLFFTVRRWSG-E-PRNCEPDKCAELRWFPLDALPDD 114 (120)
T ss_pred ceEEEEEEEEEeecC-c-cccCCCCcEeeEEEEchHHCcch
Confidence 222222333333221 1 11245689999999999998764
No 15
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.76 E-value=9.3e-18 Score=137.36 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=80.2
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCccc
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIFT 130 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~~ 130 (245)
..+|.+++.+ .++ +|||+||+.. +.+|.|+||||++|.|| |+++||+||++|||||.+. ...+++.....+.
T Consensus 17 ~~~v~~vI~~-~~g--~VLL~kR~~~--~~~g~W~lPGG~VE~GE-t~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~ 90 (159)
T PRK15434 17 LISLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD 90 (159)
T ss_pred eEEEEEEEEC-CCC--EEEEEEccCC--CCCCcEECCceecCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEeecc
Confidence 3566666665 345 8999999853 67899999999999999 9999999999999999864 2355554333221
Q ss_pred C--------CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996 131 K--------NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 131 ~--------~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
. ..+.+..|.+.+.. ....++++|+.++.|++++++.....
T Consensus 91 ~~~~~~~~~~~~i~~~f~~~~~~---g~~~~~~~E~~~~~W~~~~el~~~~~ 139 (159)
T PRK15434 91 DNFSGTDFTTHYVVLGFRLRVAE---EDLLLPDEQHDDYRWLTPDALLASDN 139 (159)
T ss_pred cccCCCccceEEEEEEEEEEecC---CcccCChHHeeEEEEEeHHHhhhccc
Confidence 1 12344445555443 22345667999999999999987543
No 16
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.76 E-value=9.5e-18 Score=133.90 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=72.1
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE-EeCC-----c
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT-ILDP-----I 128 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg-~l~~-----~ 128 (245)
+|++.++.. ++ +|||+||+..++.++|.|++|||++|+|| |+.+||+||++|||||.+....+.. .+.. .
T Consensus 5 ~~~~~ii~~-~~--~vLl~~R~~~~~~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (141)
T PRK15472 5 TIVCPLIQN-DG--AYLLCKMADDRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLLLTEITPWTFRDDIRTKT 80 (141)
T ss_pred eEEEEEEec-CC--EEEEEEecccCCCCCCceeCCcccCCCCC-CHHHHHHHHHHHHHCCceeeeeeccccccccceeEE
Confidence 344444442 45 89999998877789999999999999999 9999999999999999764322111 1100 0
Q ss_pred c-cCC-ceEEEE-EEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 129 F-TKN-GIIVVP-VIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 129 ~-~~~-~~~v~~-~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
+ ... ...... +++..... ...+.+ .+|+.++.|+++++|.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~E~~~~~w~~~~el~~l~ 126 (141)
T PRK15472 81 YADGRKEEIYMIYLIFDCVSA-NRDVKI-NEEFQDYAWVKPEDLVHYD 126 (141)
T ss_pred ecCCCceeEEEEEEEEEeecC-CCcccC-ChhhheEEEccHHHhcccc
Confidence 1 111 111111 12222211 122233 3799999999999997643
No 17
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.3e-17 Score=130.55 Aligned_cols=112 Identities=25% Similarity=0.265 Sum_probs=78.0
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG 133 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 133 (245)
.+|.+++++ .++ +|||++|... ++|.|+||||++|.|| |+.+||+||++||||+.......++..........
T Consensus 3 ~~~~~~v~~-~~~--~vLl~~r~~~---~~~~w~~PGG~ve~gE-t~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 75 (127)
T cd04670 3 VGVGGLVLN-EKN--EVLVVQERNK---TPNGWKLPGGLVDPGE-DIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFG 75 (127)
T ss_pred eEEEEEEEc-CCC--eEEEEEccCC---CCCcEECCCccCCCCC-CHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcC
Confidence 445555565 345 7999887653 6799999999999999 99999999999999999876666654332211122
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.....|++.+... ......+++|+.++.|++++++.+.+
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 76 KSDLYFICRLKPL-SFDINFDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred ceeEEEEEEEccC-cCcCCCChhhhheeEEEcHHHHhcch
Confidence 2222344444321 22344677899999999999997643
No 18
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.4e-17 Score=130.53 Aligned_cols=114 Identities=25% Similarity=0.275 Sum_probs=83.7
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK- 131 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~- 131 (245)
+.+|.++|++ .+| +|||++|... +.+|.|.+|||+++.|| ++.+||.||++||||+++..+..++........
T Consensus 2 ~~~v~~ii~~-~~~--~iLl~~r~~~--~~~~~w~~PGG~ve~gE-t~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~ 75 (129)
T cd04678 2 RVGVGVFVLN-PKG--KVLLGKRKGS--HGAGTWALPGGHLEFGE-SFEECAAREVLEETGLHIENVQFLTVTNDVFEEE 75 (129)
T ss_pred ceEEEEEEEC-CCC--eEEEEeccCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCC
Confidence 4567777776 345 8999999864 56899999999999999 999999999999999999888877766543322
Q ss_pred -CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 132 -NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 132 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..+....|.+............+++|+.++.|++++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 76 GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 22333445555543211111126788999999999999875
No 19
>PLN02325 nudix hydrolase
Probab=99.75 E-value=3e-17 Score=132.17 Aligned_cols=113 Identities=25% Similarity=0.318 Sum_probs=81.4
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK- 131 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~- 131 (245)
+.+|.+++++ ++ +|||+||... ...|.|++|||++|.|| ++.+||+||++||||+++...++++..+.....
T Consensus 9 ~~~v~~vi~~--~~--~vLL~rr~~~--~~~g~W~lPGG~ve~gE-s~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~ 81 (144)
T PLN02325 9 RVAVVVFLLK--GN--SVLLGRRRSS--IGDSTFALPGGHLEFGE-SFEECAAREVKEETGLEIEKIELLTVTNNVFLEE 81 (144)
T ss_pred eEEEEEEEEc--CC--EEEEEEecCC--CCCCeEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence 4556555554 35 8999999875 45689999999999999 999999999999999999999988887554311
Q ss_pred ---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 132 ---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 132 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..+....|.+...+........+++|+.++.|+++++|...
T Consensus 82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 12233334454443221122346677889999999998753
No 20
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.75 E-value=2e-17 Score=133.15 Aligned_cols=111 Identities=28% Similarity=0.361 Sum_probs=81.6
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc----
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF---- 129 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~---- 129 (245)
.+|.+++++ .++ +|||+||+... |.|++|||++|+|| ++.+||+||++||||+.+....+++......
T Consensus 4 ~~v~~ii~~-~~~--~vLL~~r~~~~----~~W~~PgG~~e~gE-~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~ 75 (147)
T cd03671 4 PNVGVVLFN-EDG--KVFVGRRIDTP----GAWQFPQGGIDEGE-DPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDL 75 (147)
T ss_pred ceEEEEEEe-CCC--EEEEEEEcCCC----CCEECCcCCCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeC
Confidence 456666666 345 89999998762 89999999999999 9999999999999999988888887653211
Q ss_pred c-----------CCceEEEEEEEEeCCC-CCCCCCC-CcccceeEEEEcccccccc
Q 025996 130 T-----------KNGIIVVPVIGILPDR-NSFIPAP-NTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 130 ~-----------~~~~~v~~~v~~~~~~-~~~~~~~-~~~Ev~~v~wvpl~el~~~ 172 (245)
. ..+..++.|++.+... ....+.. +++|+.++.|+|++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~ 131 (147)
T cd03671 76 PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL 131 (147)
T ss_pred hhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence 0 1133456666666541 1222223 2579999999999999874
No 21
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.75 E-value=1.1e-17 Score=139.31 Aligned_cols=122 Identities=24% Similarity=0.321 Sum_probs=88.4
Q ss_pred CCCCCceEEEEEEEE-cCCCcEEEEEEEeCCCCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce---EE
Q 025996 48 SSTKKRAAVLVCLFE-GNDGDLRVFLTKRSSNLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPSLVN---VV 122 (245)
Q Consensus 48 ~~~~r~aaV~v~l~~-~~~g~~~vLL~rR~~~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~---~l 122 (245)
..+..+.+|.|.++. +.+++.+|+++||+..+..+||+| .+|||++++|| ++.+||+||++|||||+...++ .+
T Consensus 27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE-~~~~aA~REl~EE~Gl~~~~~~~l~~~ 105 (180)
T cd03676 27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGE-GPEETLVKECDEEAGLPEDLVRQLKPV 105 (180)
T ss_pred cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCC-CHHHHHHHHHHHHhCCCHHHHhhceec
Confidence 347788888875442 233246999999999998999999 59999999999 9999999999999999877643 34
Q ss_pred EEeCCccc--C---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 123 TILDPIFT--K---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 123 g~l~~~~~--~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
+.+...+. . ....++.|.+.+.. ...+.++++|+.++.|++++++.+.
T Consensus 106 g~~~~~~~~~~~~~~~e~~~~f~~~~~~--~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 106 GVVSYLREGEAGGLQPEVEYVYDLELPP--DFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred cEEEEEEEcCCCcEeeeEEEEEEEEcCC--CCeeCCCCCcEeEEEEECHHHHHHH
Confidence 43332221 1 12334445544432 2234568899999999999999864
No 22
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.75 E-value=9.7e-18 Score=132.66 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=81.7
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI 134 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~ 134 (245)
+|++++++ .++ +|||++|... .+|.|++|||+++.|| ++++||+||++|||||.+..+.+++....... ..
T Consensus 2 ~v~i~l~~-~~~--~vLL~~r~~~---~~~~w~lPgG~ie~gE-t~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~ 72 (131)
T cd03429 2 AVIVLVID-GGD--RILLARQPRF---PPGMYSLLAGFVEPGE-SLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP--SS 72 (131)
T ss_pred eEEEEEEe-CCC--EEEEEEecCC---CCCcCcCCcccccCCC-CHHHHHhhhhhhccCceeeeeEEEeecCCCCC--ce
Confidence 46666665 334 8999998753 3789999999999999 99999999999999999988888876533222 33
Q ss_pred EEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 135 IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 135 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+..|++.+.. .....+++|+.++.|+|++++.+.
T Consensus 73 ~~~~f~~~~~~---~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 73 LMLGFTAEADS---GEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEEEEEcC---CcccCCchhhhccEeecHHHHhhc
Confidence 45556666653 234467789999999999999875
No 23
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.7e-17 Score=133.52 Aligned_cols=115 Identities=23% Similarity=0.257 Sum_probs=81.7
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc----eEEEEeCCcc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV----NVVTILDPIF 129 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~----~~lg~l~~~~ 129 (245)
++|.+++++ .++ +|||+||+..+..++|.|++|||+++++| ++.+||+||++||+|+.+... ++++.....+
T Consensus 2 ~~v~viv~~-~~~--~vLl~rr~~~~~~~~g~w~~PgG~v~~~E-~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~ 77 (143)
T cd04694 2 VGVAVLLQS-SDQ--KLLLTRRASSLRIFPNVWVPPGGHVELGE-NLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVY 77 (143)
T ss_pred cEEEEEEEc-CCC--EEEEEEECCCCCCCCCeEECcccccCCCC-CHHHHHHHHHHHHHCCCccccccceeEEeeecccc
Confidence 456666666 355 89999999876689999999999999999 999999999999999987653 5565543322
Q ss_pred c------CC-ceEEEEEEEEeCCC----CCCCCCCCcccceeEEEEcccccccc
Q 025996 130 T------KN-GIIVVPVIGILPDR----NSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 130 ~------~~-~~~v~~~v~~~~~~----~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
. .. ...+..|++..... ....+.++++|++++.|++++++.+-
T Consensus 78 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 78 PPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred ccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 1 11 22333443332211 11234567899999999999988764
No 24
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.75 E-value=1.7e-17 Score=129.57 Aligned_cols=110 Identities=25% Similarity=0.279 Sum_probs=78.6
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc---
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT--- 130 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~--- 130 (245)
+|.++++.. .+++.+|||++|... |.|+||||++++|| ++.+||.||++||||+.+..+..++.+.....
T Consensus 3 ~a~~ii~~~-~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 75 (131)
T cd03673 3 AAGGVVFRG-SDGGIEVLLIHRPRG-----DDWSLPKGKLEPGE-TPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSG 75 (131)
T ss_pred eEEEEEEEc-cCCCeEEEEEEcCCC-----CcccCCCCccCCCC-CHHHHHHHHHhhhhCCceEecceEEEEEEeccCCC
Confidence 344443333 344459999998754 79999999999999 99999999999999999888877776543332
Q ss_pred -CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 131 -KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 131 -~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.....++.|.+..... .... .+.+|+.++.|+|++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~ 116 (131)
T cd03673 76 KRVHKTVHWWLMRALGG-EFTP-QPDEEVDEVRWLPPDEARDR 116 (131)
T ss_pred CCcceEEEEEEEEEcCC-Cccc-CCCCcEEEEEEcCHHHHHHH
Confidence 2234455555555432 1111 25689999999999998764
No 25
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2e-17 Score=127.80 Aligned_cols=109 Identities=26% Similarity=0.328 Sum_probs=80.1
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC---
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK--- 131 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~--- 131 (245)
+|.+++++ ++ +|||++|... .++|.|.||||++++|| ++++||.||++||||+++.....++.+......
T Consensus 2 ~v~~ii~~--~~--~vLl~~r~~~--~~~~~w~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 74 (122)
T cd04673 2 AVGAVVFR--GG--RVLLVRRANP--PDAGLWSFPGGKVELGE-TLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAG 74 (122)
T ss_pred cEEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCC
Confidence 34455555 34 7999999864 57899999999999999 999999999999999998877777776554321
Q ss_pred ---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996 132 ---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 132 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
....++.|.+..... .. .+.+|+.++.|++++++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~---~~-~~~~E~~~~~w~~~~el~~~~~ 116 (122)
T cd04673 75 RVEFHYVLIDFLCRYLGG---EP-VAGDDALDARWVPLDELAALSL 116 (122)
T ss_pred ccceEEEEEEEEEEeCCC---cc-cCCcccceeEEECHHHHhhCcC
Confidence 123444455554332 22 3458999999999999987543
No 26
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.74 E-value=2.3e-17 Score=137.58 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=83.9
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI 128 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~ 128 (245)
+.++.++.+++++ .+| +|||++|+.....+||.| .+|||++++|| |+++||+||++|||||....+..++.+...
T Consensus 34 ~~~h~~~~v~v~~-~~g--~iLL~~R~~~~~~~pg~~~~~pGG~ve~GE-s~~eAA~REL~EEtGl~~~~~~~~~~~~~~ 109 (180)
T PRK15393 34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQAGE-QLLESARREAEEELGIAGVPFAEHGQFYFE 109 (180)
T ss_pred CCceEEEEEEEEC-CCC--eEEEEEeCCCCCCCCCcccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCccceeceeEEec
Confidence 5677888887776 455 899999988766778988 58999999999 999999999999999987766666554221
Q ss_pred ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..........|.+... ....++++|+.++.|++++++.+.
T Consensus 110 ~~~~~~~~~~f~~~~~----~~~~~~~~E~~~~~W~~~~el~~~ 149 (180)
T PRK15393 110 DENCRVWGALFSCVSH----GPFALQEEEVSEVCWMTPEEITAR 149 (180)
T ss_pred CCCceEEEEEEEEEeC----CCCCCChHHeeEEEECCHHHHhhh
Confidence 1111122223333322 224567899999999999999864
No 27
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.74 E-value=3.1e-17 Score=131.57 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=80.8
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-C
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-N 132 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-~ 132 (245)
.||.+++++ .++ +|||++|... ..+|.|+||||++++|| ++++||+||++||||+++..+.+++.+...... .
T Consensus 14 ~av~~vv~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 87 (142)
T cd04700 14 RAAGAVILN-ERN--DVLLVQEKGG--PKKGLWHIPSGAVEDGE-FPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV 87 (142)
T ss_pred eeEEEEEEe-CCC--cEEEEEEcCC--CCCCeEECCceecCCCC-CHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCc
Confidence 445555565 345 6888887654 46799999999999999 999999999999999999888888766432222 2
Q ss_pred ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996 133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
....+.|++..... ...+. ..+|+.++.|+|++++.+...
T Consensus 88 ~~~~~~f~~~~~~~-~~~~~-~~~E~~~~~w~~~~el~~~~~ 127 (142)
T cd04700 88 LVLRHVWLAEPEGQ-TLAPK-FTDEIAEASFFSREDVAQLYA 127 (142)
T ss_pred EEEEEEEEEEecCC-ccccC-CCCCEEEEEEECHHHhhhccc
Confidence 23345566665432 22222 237999999999999987554
No 28
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.2e-17 Score=126.48 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=79.2
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC-cceEEEEeCCcccCCc
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS-LVNVVTILDPIFTKNG 133 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~-~~~~lg~l~~~~~~~~ 133 (245)
+|.+++++ .+| ++||++|+.. +.|.||||+++.|| ++++||+||++||||+.+. ...+++.+........
T Consensus 2 ~~~~~i~~-~~~--~vLL~~r~~~-----~~w~~PgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~ 72 (120)
T cd04680 2 GARAVVTD-ADG--RVLLVRHTYG-----PGWYLPGGGLERGE-TFAEAARRELLEELGIRLAVVAELLGVYYHSASGSW 72 (120)
T ss_pred ceEEEEEC-CCC--eEEEEEECCC-----CcEeCCCCcCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEecCCCCCc
Confidence 34555565 355 8999998754 38999999999999 9999999999999999998 8888887765543333
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..++.|.+..... ....+.+|+.++.|+|++++.+.
T Consensus 73 ~~~~~f~~~~~~~---~~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 73 DHVIVFRARADTQ---PVIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred eEEEEEEecccCC---CccCCcccEEEEEEECHHHCccc
Confidence 4455555544432 11356689999999999999763
No 29
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.74 E-value=2.5e-17 Score=129.24 Aligned_cols=109 Identities=28% Similarity=0.247 Sum_probs=79.8
Q ss_pred EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCC--cc--cC
Q 025996 56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDP--IF--TK 131 (245)
Q Consensus 56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~--~~--~~ 131 (245)
|.|++++ ..++.+|||+||+.. ++|.|.+|||+++.|| ++.+||+||++|||||.+..+.++..... .+ ..
T Consensus 4 ~~v~~~~-~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~E-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04664 4 VLVVPYR-LTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGE-SPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD 78 (129)
T ss_pred EEEEEEE-eCCCCEEEEEEeCCC---CCCcccccCcccCCCC-CHHHHHHHHHHHHHCCChhheEEEeecccccccccCC
Confidence 4444555 212238999999875 7899999999999999 99999999999999999877777776543 11 11
Q ss_pred --CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 132 --NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 132 --~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
....++.|++.+.... ....++|+.++.|+|++++.+.
T Consensus 79 ~~~~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~ 118 (129)
T cd04664 79 NGRVWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAAL 118 (129)
T ss_pred CceEEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHHH
Confidence 2245666777665421 1235579999999999998754
No 30
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.74 E-value=3.5e-17 Score=127.38 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=79.4
Q ss_pred EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC----
Q 025996 56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK---- 131 (245)
Q Consensus 56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~---- 131 (245)
|..++++ ++ +|||++|... .++|.|+||||++|.|| ++.+||+||++||||+....+.+++.....+..
T Consensus 3 ~~~ii~~--~~--~vLl~~~~~~--~~~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd04684 3 AYAVIPR--DG--KLLLIQKNGG--PYEGRWDLPGGGIEPGE-SPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD 75 (128)
T ss_pred eEEEEEe--CC--EEEEEEccCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC
Confidence 4444454 34 8999999876 37899999999999999 999999999999999998888877776543211
Q ss_pred --CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 132 --NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 132 --~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.....+.|.+....... ....+.+|+.++.|+|++++....
T Consensus 76 ~~~~~~~~~f~~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~~~ 118 (128)
T cd04684 76 YDAHHLCVFYDARVVGGAL-PVQEPGEDSHGAAWLPLDEAIERL 118 (128)
T ss_pred eeccEEEEEEEEEEecCcc-ccCCCCCCceeeEEECHHHhhccC
Confidence 12334445555543211 013455788999999999997543
No 31
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.73 E-value=2e-17 Score=135.09 Aligned_cols=114 Identities=21% Similarity=0.195 Sum_probs=83.2
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcce--EEEEeC
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVN--VVTILD 126 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~--~lg~l~ 126 (245)
+..+.+|.+++++ .+| +|||+||+..+..+||.|++| ||+++.|| + +||+||++|||||++..+. .++...
T Consensus 24 g~~h~~v~v~v~~-~~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-~--eaa~REl~EE~Gl~~~~~~l~~~~~~~ 97 (158)
T TIGR02150 24 TPLHRAFSVFLFN-EEG--QLLLQRRALSKITWPGVWTNSCCSHPLPGE-L--EAAIRRLREELGIPADDVPLTVLPRFS 97 (158)
T ss_pred CCeEEEEEEEEEc-CCC--eEEEEeccCCCcCCCCCccccccCCCCccc-H--HHHHHHHHHHHCCCccccceEEcceEE
Confidence 6788888888887 456 899999999887899999997 89999999 4 9999999999999887654 333222
Q ss_pred Cccc-CCc--eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 127 PIFT-KNG--IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 127 ~~~~-~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.... ..+ ...+.|.+.... .+.++++|++++.|++++++.+.-
T Consensus 98 ~~~~~~~g~~~~~~~f~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~~ 143 (158)
T TIGR02150 98 YRARDAWGEHELCPVFFARAPV----PLNPNPEEVAEYRWVSLEELKEIL 143 (158)
T ss_pred EEEecCCCcEEEEEEEEEecCC----cccCChhHeeeEEEeCHHHHHHHH
Confidence 1111 112 223334333321 345677899999999999987643
No 32
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.73 E-value=2.2e-17 Score=135.68 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=83.3
Q ss_pred CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcceEE-EEeCCc-
Q 025996 52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVNVV-TILDPI- 128 (245)
Q Consensus 52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~l-g~l~~~- 128 (245)
.+.+|.+++++ .++ +|||+||+..+..+||.|++| ||++++|| ++++||+||++|||||.+....++ +.+...
T Consensus 29 ~~~~v~v~i~~-~~~--~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GE-t~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~ 104 (165)
T cd02885 29 LHRAFSVFLFN-SKG--RLLLQRRALSKYTFPGLWTNTCCSHPLPGE-GVKDAAQRRLREELGITGDLLELVLPRFRYRA 104 (165)
T ss_pred ceeEEEEEEEc-CCC--cEEEEeccCCCccCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccchhhccceEEEEE
Confidence 37888887777 455 799999998877899999996 89999999 999999999999999998766654 332211
Q ss_pred -ccC---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 129 -FTK---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 129 -~~~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
... .....+.|.+.... ...++++|+.++.|+|++++.+..
T Consensus 105 ~~~~~~~~~~i~~~f~~~~~~----~~~~~~~Ev~~~~w~~~~el~~~~ 149 (165)
T cd02885 105 PDDGGLVEHEIDHVFFARADV----TLIPNPDEVSEYRWVSLEDLKELV 149 (165)
T ss_pred EcCCCceeeEEEEEEEEEeCC----CCCCCccceeEEEEECHHHHHHHH
Confidence 111 11122334444322 234577899999999999997754
No 33
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.72 E-value=3.6e-17 Score=128.17 Aligned_cols=110 Identities=23% Similarity=0.202 Sum_probs=79.5
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc----
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI---- 128 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~---- 128 (245)
+++.+|++.. .+++.++||++|+. |.|+||||++++|| |+.+||+||++||||+....+..++.+...
T Consensus 3 ~~~g~vi~~~-~~~~~~vLl~~~~~------~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 74 (130)
T cd03428 3 RSAGAIIYRR-LNNEIEYLLLQASY------GHWDFPKGHVEPGE-DDLEAALRETEEETGITAEQLFIVLGFKETLNYQ 74 (130)
T ss_pred eEEEEEEEEe-cCCCceEEEEEccC------CcCcCCcCCCCCCC-CHHHHHHHHHHHHHCCChhhhhhhccceeEEEcc
Confidence 3444444444 45566899999885 78999999999999 999999999999999998877765322211
Q ss_pred ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.......++.|++.+... ..+.++ +|+.++.|++++++.+..
T Consensus 75 ~~~~~~~~~~f~~~~~~~--~~~~~~-~E~~~~~W~~~~e~~~~~ 116 (130)
T cd03428 75 VRGKLKTVTYFLAELRPD--VEVKLS-EEHQDYRWLPYEEALKLL 116 (130)
T ss_pred ccCcceEEEEEEEEeCCC--Cccccc-cceeeEEeecHHHHHHHc
Confidence 122345667777777632 223445 899999999999987643
No 34
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1.1e-16 Score=125.55 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=74.5
Q ss_pred EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceE
Q 025996 56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGII 135 (245)
Q Consensus 56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~ 135 (245)
|.+++++ .++ +|||++|... .+++.|+||||++|.|| ++.+||.||++||||+++...++++..... ....
T Consensus 3 ~~~vv~~-~~~--~vLl~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~ 73 (123)
T cd04671 3 VAAVILN-NQG--EVLLIQEAKR--SCRGKWYLPAGRMEPGE-TIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWF 73 (123)
T ss_pred EEEEEEc-CCC--EEEEEEecCC--CCCCeEECceeecCCCC-CHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEE
Confidence 4444454 345 8999999864 56899999999999999 999999999999999999888777654321 2233
Q ss_pred EEEEEEEeCCCCCCCC-CCCcccceeEEEEccccc
Q 025996 136 VVPVIGILPDRNSFIP-APNTAEVDAIFDAPLEMF 169 (245)
Q Consensus 136 v~~~v~~~~~~~~~~~-~~~~~Ev~~v~wvpl~el 169 (245)
...|.+..... .... ..+.+|+.++.|+|++++
T Consensus 74 ~~~f~a~~~~g-~~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 74 RFVFTGNITGG-DLKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred EEEEEEEEeCC-eEccCCCCCcceEEEEEECHHHC
Confidence 34454544332 1111 123467889999999999
No 35
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.72 E-value=1.7e-17 Score=129.54 Aligned_cols=116 Identities=33% Similarity=0.421 Sum_probs=86.8
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN 132 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~ 132 (245)
+.+|.+++++ .++ +|||++|......++|.|.+|||+++.+| |+.+||+||++||||++......++.........
T Consensus 2 ~~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E-~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~ 77 (134)
T PF00293_consen 2 RRAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPGE-SPEEAARRELKEETGLDVSPLELLGLFSYPSPSG 77 (134)
T ss_dssp EEEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTTS-HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred CCEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcCC-chhhhHHhhhhhcccceecccccceeeeecccCC
Confidence 5677777777 455 89999999875458899999999999999 9999999999999999986555555443332221
Q ss_pred ---ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 133 ---GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 133 ---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
+..++.|++.+.... .....+..|+.++.|++++++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~ 120 (134)
T PF00293_consen 78 DPEGEIVIFFIAELPSEQ-SEIQPQDEEISEVKWVPPDELLELL 120 (134)
T ss_dssp ESSEEEEEEEEEEEEEEE-SECHTTTTTEEEEEEEEHHHHHHHH
T ss_pred CcccEEEEEEEEEEeCCc-cccCCCCccEEEEEEEEHHHhhhch
Confidence 356666666665432 1234455599999999999998754
No 36
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.72 E-value=1.1e-16 Score=129.05 Aligned_cols=113 Identities=24% Similarity=0.270 Sum_probs=82.1
Q ss_pred CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc-
Q 025996 52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT- 130 (245)
Q Consensus 52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~- 130 (245)
...+|.+++.. ++ +|||+||... ++.|.|++|||++|.|| ++++||+||++|||||++..+++++.++....
T Consensus 9 p~~~v~~~i~~--~~--~iLLvrR~~~--p~~g~WalPGG~ve~GE-t~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd 81 (145)
T COG1051 9 PLVAVGALIVR--NG--RILLVRRANE--PGAGYWALPGGFVEIGE-TLEEAARRELKEETGLRVRVLELLAVFDDPGRD 81 (145)
T ss_pred cceeeeEEEEe--CC--EEEEEEecCC--CCCCcEeCCCccCCCCC-CHHHHHHHHHHHHhCCcccceeEEEEecCCCCC
Confidence 45566665554 34 8999999987 88899999999999999 99999999999999999988998888876543
Q ss_pred CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 131 KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 131 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..+.++..++......... ...+.++...+.|++++++...
T Consensus 82 ~r~~~v~~~~~~~~~~g~~-~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 82 PRGHHVSFLFFAAEPEGEL-LAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred CceeEEEEEEEEEecCCCc-ccCChhhHhhcceecHhHcccc
Confidence 2333333322222211111 1233358889999999998864
No 37
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1e-16 Score=125.20 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=75.2
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc-----
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF----- 129 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~----- 129 (245)
+|.+++++ .+| +|||+||.. ++|.|+||||+++.|| |+.+||+||++||||+++..+.+++.....+
T Consensus 4 ~v~~~i~~-~~~--~iLL~r~~~----~~~~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 75 (125)
T cd04696 4 TVGALIYA-PDG--RILLVRTTK----WRGLWGVPGGKVEWGE-TLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFH 75 (125)
T ss_pred EEEEEEEC-CCC--CEEEEEccC----CCCcEeCCceeccCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCC
Confidence 44555555 355 799998753 4689999999999999 9999999999999999988777665433222
Q ss_pred cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 130 TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 130 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
....+.+..|.+..... ....+ +|+.++.|+|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~-~e~~~~~W~~~~el~~~~ 115 (125)
T cd04696 76 KPAHFVLFDFFARTDGT---EVTPN-EEIVEWEWVTPEEALDYP 115 (125)
T ss_pred CccEEEEEEEEEEecCC---cccCC-cccceeEEECHHHHhcCC
Confidence 11223334455554321 22333 789999999999997754
No 38
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.3e-16 Score=125.26 Aligned_cols=108 Identities=26% Similarity=0.298 Sum_probs=75.5
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc--cc
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI--FT 130 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~--~~ 130 (245)
..+|.+++++ .++ +|||++|... |.|+||||++++|| ++.+||+||++||||+.+.....++.+... +.
T Consensus 7 ~~~~~~~v~~-~~~--~vLL~~r~~~-----~~w~~PgG~v~~gE-t~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~ 77 (132)
T cd04677 7 LVGAGVILLN-EQG--EVLLQKRSDT-----GDWGLPGGAMELGE-SLEETARRELKEETGLEVEELELLGVYSGKEFYV 77 (132)
T ss_pred ccceEEEEEe-CCC--CEEEEEecCC-----CcEECCeeecCCCC-CHHHHHHHHHHHHhCCeeeeeEEEEEecCCceee
Confidence 4556666666 345 7999998754 78999999999999 999999999999999999888777655321 11
Q ss_pred --CCc---eEEE-EEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 131 --KNG---IIVV-PVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 131 --~~~---~~v~-~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..+ ..+. .+++... ...+..+.+|+.++.|+|++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~W~~~~e~~~~ 122 (132)
T cd04677 78 KPNGDDEQYIVTLYYVTKVF---GGKLVPDGDETLELKFFSLDELPEL 122 (132)
T ss_pred cCCCCcEEEEEEEEEEEecc---CCcccCCCCceeeEEEEChhHCccc
Confidence 111 1222 2222222 1222456689999999999998654
No 39
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.71 E-value=1.1e-16 Score=133.85 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=84.5
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcce-EEEEeCC
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVN-VVTILDP 127 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~-~lg~l~~ 127 (245)
+..+.||.+++++ .+| +|||+||+..+..+||.|.+| ||++++|| ++++||+||++|||||++..+. +++.+..
T Consensus 31 ~~~h~av~v~i~~-~~g--~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 106 (184)
T PRK03759 31 TPLHLAFSCYLFD-ADG--RLLVTRRALSKKTWPGVWTNSCCGHPQPGE-SLEDAVIRRCREELGVEITDLELVLPDFRY 106 (184)
T ss_pred CCeeeEEEEEEEc-CCC--eEEEEEccCCCCCCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccccccccceEEE
Confidence 4567788887776 355 899999988776889999987 89999999 9999999999999999886443 2332221
Q ss_pred c-ccCCc----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 128 I-FTKNG----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 128 ~-~~~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
. ....+ ...+.|++.... .+.++++|+.++.|+|++++.+.-
T Consensus 107 ~~~~~~~~~~~~~~~vf~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 107 RATDPNGIVENEVCPVFAARVTS----ALQPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred EEecCCCceeeEEEEEEEEEECC----CCCCChhHeeeEEEECHHHHHHHH
Confidence 1 01111 233455555542 245678899999999999997743
No 40
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=3.9e-17 Score=128.87 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=71.0
Q ss_pred EEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC---CceEEEEEEEEeC
Q 025996 68 LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK---NGIIVVPVIGILP 144 (245)
Q Consensus 68 ~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~---~~~~v~~~v~~~~ 144 (245)
.+|||.+|... ++|.|++|||++++|| |+.+||+||++||||+.+..+...+.+..+++. ....+..|++.+.
T Consensus 14 ~~vLl~~r~~~---~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 89 (131)
T cd04695 14 TKVLLLKRVKT---LGGFWCHVAGGVEAGE-TAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVP 89 (131)
T ss_pred CEEEEEEecCC---CCCcEECCcccccCCC-CHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEec
Confidence 38999999864 6799999999999999 999999999999999988755332222222221 1233445555554
Q ss_pred CCCCCCCCCCcccceeEEEEccccccccCC
Q 025996 145 DRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 145 ~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
... ...++ +|+.++.|+|++++.+...
T Consensus 90 ~~~--~~~~~-~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 90 PHQ--EVVLN-HEHTEYRWCSFAEALELAP 116 (131)
T ss_pred CCC--ccccC-chhcccEecCHHHHHHhcC
Confidence 321 12233 7999999999999987543
No 41
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.71 E-value=1.7e-16 Score=132.81 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=86.3
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN 132 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~ 132 (245)
..+|+|+.+. +++ +|||+|+... +.+++.|+||||.+|+|| ++++||+||++||||+.+..++.++.+....+..
T Consensus 47 ~~~v~v~~~~-~~~--~vlLvrq~r~-~~~~~~~elPaG~ve~gE-~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~ 121 (185)
T PRK11762 47 RGAVMIVPIL-DDD--TLLLIREYAA-GTERYELGFPKGLIDPGE-TPLEAANRELKEEVGFGARQLTFLKELSLAPSYF 121 (185)
T ss_pred CCEEEEEEEe-CCC--EEEEEEeecC-CCCCcEEEccceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEecCCCcc
Confidence 3455555454 345 7999988654 367788999999999999 9999999999999999999999999876655555
Q ss_pred ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
...++.|++..... .....++.|..++.|+|++++.+.
T Consensus 122 ~~~~~~f~a~~~~~--~~~~~~e~E~i~~~~~~~~e~~~~ 159 (185)
T PRK11762 122 SSKMNIVLAEDLYP--ERLEGDEPEPLEVVRWPLADLDEL 159 (185)
T ss_pred CcEEEEEEEEcccc--ccCCCCCCceeEEEEEcHHHHHHH
Confidence 66777777764432 112346678889999999988663
No 42
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.70 E-value=1.6e-16 Score=126.63 Aligned_cols=110 Identities=21% Similarity=0.329 Sum_probs=73.9
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE------EeC
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT------ILD 126 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg------~l~ 126 (245)
+.+|.+++++...+ +|||++|.. .|.|++|||++|+|| ++++||.||++||||+.+..+..++ .+.
T Consensus 2 ~~~~~~~v~~~~~~--~vLLv~r~~-----~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 73 (138)
T cd03674 2 HFTASAFVVNPDRG--KVLLTHHRK-----LGSWLQPGGHIDPDE-SLLEAALRELREETGIELLGLRPLSVLVDLDVHP 73 (138)
T ss_pred cEEEEEEEEeCCCC--eEEEEEEcC-----CCcEECCceecCCCC-CHHHHHHHHHHHHHCCCcccceeccccccceeEe
Confidence 45566666763214 899999875 378999999999999 9999999999999999876655432 111
Q ss_pred Cc--ccC---Cce-EEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 127 PI--FTK---NGI-IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 127 ~~--~~~---~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.. ... ... ....|.+.+... .... ++.+|+.++.|+|++++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 74 IDGHPKRGVPGHLHLDLRFLAVAPAD-DVAP-PKSDESDAVRWFPLDELASL 123 (138)
T ss_pred ecCCCCCCCCCcEEEEEEEEEEccCc-cccC-CCCCcccccEEEcHHHhhhc
Confidence 11 110 111 222355554432 1111 36689999999999999754
No 43
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.70 E-value=2.5e-16 Score=124.18 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=73.3
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC--CceEEEEEEEEeCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK--NGIIVVPVIGILPDR 146 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~--~~~~v~~~v~~~~~~ 146 (245)
++||++|... ..+.|+||||++|+|| ++.+||.||++||||+++....+++.+...... ..+..+.|++.+...
T Consensus 12 ~vLlv~r~~~---~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 87 (134)
T cd03675 12 RFLLVEEETD---GGLVFNQPAGHLEPGE-SLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEH 87 (134)
T ss_pred EEEEEEEccC---CCceEECCCccCCCCC-CHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCC
Confidence 7999998764 4579999999999999 999999999999999998877777765433222 223334566666542
Q ss_pred CCCCCCCCcccceeEEEEccccccccC
Q 025996 147 NSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 147 ~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
. . .....+|+.++.|++++++.+..
T Consensus 88 ~-~-~~~~~~e~~~~~w~~~~el~~~~ 112 (134)
T cd03675 88 L-P-DQPLDSGIVRAHWLTLEEILALA 112 (134)
T ss_pred C-C-CCCCCCCceeeEEEeHHHHHhhh
Confidence 1 1 11234689999999999998754
No 44
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.70 E-value=3.8e-16 Score=121.50 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEe
Q 025996 64 NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGIL 143 (245)
Q Consensus 64 ~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~ 143 (245)
.+| +|||+||+.. +.++|.|+||||++++|| ++.+||.||++||||+++.....++.+.+.++.....+..|.+..
T Consensus 14 ~~~--~vll~rR~~~-~~~~g~w~~PgG~~~~gE-~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (129)
T PRK10776 14 PNN--EIFITRRAAD-AHMAGKWEFPGGKIEAGE-TPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVES 89 (129)
T ss_pred CCC--EEEEEEecCC-CCCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEE
Confidence 345 8999999876 468999999999999999 999999999999999987777777776665555545555554433
Q ss_pred CCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 144 PDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
... . +.+.|..++.|++++++...
T Consensus 90 ~~~---~--~~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 90 WEG---E--PWGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred ECC---c--cCCccCCccEEecHHHCccC
Confidence 211 1 23457888999999998753
No 45
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.70 E-value=2.2e-16 Score=124.91 Aligned_cols=97 Identities=24% Similarity=0.227 Sum_probs=73.0
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC--CceEEEEEEEEeCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK--NGIIVVPVIGILPDR 146 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~--~~~~v~~~v~~~~~~ 146 (245)
+|||++|+.. .++|.|++|||++|.|| ++.+||+||++||||+....+.+++.+...... ....++.|.+.....
T Consensus 13 ~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 89 (137)
T cd03427 13 KVLLLNRKKG--PGWGGWNGPGGKVEPGE-TPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG 89 (137)
T ss_pred EEEEEEecCC--CCCCeEeCCceeCCCCC-CHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc
Confidence 8999999976 37899999999999999 999999999999999999888888776543322 233444444433321
Q ss_pred CCCCCCCCcccceeEEEEcccccccc
Q 025996 147 NSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 147 ~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
... +.+|..++.|+|++++.+.
T Consensus 90 ---~~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 90 ---EPL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred ---ccC-CCCccccceEEcHhhcccc
Confidence 122 3466678999999998754
No 46
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=2.5e-16 Score=122.63 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=72.6
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc-ccC-C
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI-FTK-N 132 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~-~~~-~ 132 (245)
+|.+++++ ++| +|||+||......++|.|+||||++++|| ++.+||+||++||||+.+.....++..... .+. .
T Consensus 3 ~v~~vv~~-~~~--~iLl~kr~~~~~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04699 3 AVAALIVK-DVG--RILILKRSKDERTAPGKWELPGGKVEEGE-TFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVY 78 (129)
T ss_pred eEEEEEEC-CCC--cEEEEEecCCCCCCCCcCcCCccCccCCC-CHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEE
Confidence 34444554 335 79999998875457999999999999999 999999999999999988766654222111 111 1
Q ss_pred ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996 133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL 170 (245)
Q Consensus 133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~ 170 (245)
......|.+.... . ...+++|+.++.|+|++++.
T Consensus 79 ~~~~~~~~~~~~~--~--~~~~~~e~~~~~w~~~~el~ 112 (129)
T cd04699 79 NVIYLVFVCEALS--G--AVKLSDEHEEYAWVTLEELA 112 (129)
T ss_pred EEEEEEEEeeecC--C--cccCChhheEEEEecHHHhh
Confidence 1222223332221 1 12345789999999999974
No 47
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.69 E-value=2.4e-16 Score=126.75 Aligned_cols=108 Identities=23% Similarity=0.165 Sum_probs=74.4
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC--CcceEEEEeCC---
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP--SLVNVVTILDP--- 127 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~--~~~~~lg~l~~--- 127 (245)
+.+|.+++++ .+| +|||++|... +|.|++|||++|.|| |+.+||+||++|||||.+ ..+.+++....
T Consensus 7 ~~~v~~vi~~-~~~--~vLl~~r~~~----~~~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 78 (148)
T PRK09438 7 PVSVLVVIYT-PDL--GVLMLQRADD----PDFWQSVTGSLEEGE-TPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEY 78 (148)
T ss_pred ceEEEEEEEe-CCC--eEEEEEecCC----CCcEeCCcccCCCCC-CHHHHHHHHHHHHhCcCccccceeeccccccccc
Confidence 4567777776 355 7999988643 589999999999999 999999999999999987 44443321100
Q ss_pred -cc---------cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 128 -IF---------TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 128 -~~---------~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
++ .......+.|.+..... . .+..+|+.++.|++++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~--~~~~~E~~~~~W~~~~e~~~~ 129 (148)
T PRK09438 79 EIFPHWRHRYAPGVTRNTEHWFCLALPHE--R--PVVLTEHLAYQWLDAREAAAL 129 (148)
T ss_pred ccchhhhhccccccCCceeEEEEEecCCC--C--ccccCcccceeeCCHHHHHHH
Confidence 00 11123445565554332 1 234469999999999998774
No 48
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.69 E-value=5.5e-16 Score=120.97 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=69.2
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc----eEEEEEEEEeC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG----IIVVPVIGILP 144 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~----~~v~~~v~~~~ 144 (245)
+|||++|... +.|.+|||++|+|| ++.+||+||++||||++.....+++.+...+...+ ...+.|.+...
T Consensus 13 ~vLlv~~~~~-----~~~~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 86 (125)
T cd04689 13 KVLLARVIGQ-----PHYFLPGGHVEPGE-TAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESS 86 (125)
T ss_pred EEEEEEecCC-----CCEECCCCcCCCCC-CHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcc
Confidence 7999998642 68999999999999 99999999999999999988888887754432221 22234444433
Q ss_pred CCCCCCCCCCcccceeEEEEcccccc
Q 025996 145 DRNSFIPAPNTAEVDAIFDAPLEMFL 170 (245)
Q Consensus 145 ~~~~~~~~~~~~Ev~~v~wvpl~el~ 170 (245)
.........+.+|+.++.|++++++.
T Consensus 87 ~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 87 WLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred cccccCCccCccceEEEEEccHHHcc
Confidence 22111122345789999999999964
No 49
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.69 E-value=5.7e-16 Score=122.23 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=73.6
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
+|||++|+.. +.++|.|+||||++|.|| ++.+||.||++||||+.+....+++.....++.....++.|.+.....
T Consensus 16 ~vLL~~R~~~-~~~~g~w~~PgG~ve~gE-~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (135)
T PRK10546 16 KILLAQRPAH-SDQAGLWEFAGGKVEPGE-SQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFHG-- 91 (135)
T ss_pred EEEEEEccCC-CCCCCcEECCcccCCCCC-CHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEecC--
Confidence 7999999775 368899999999999999 999999999999999998777777766555554444555554443211
Q ss_pred CCCCCCcccceeEEEEcccccccc
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+...|..++.|++++++.+.
T Consensus 92 ---~~~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 92 ---ELQAHEHQALVWCTPEEALRY 112 (135)
T ss_pred ---cccccccceeEEcCHHHcccC
Confidence 122356788999999988763
No 50
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.68 E-value=3.3e-16 Score=126.28 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=69.5
Q ss_pred EEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEE
Q 025996 58 VCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVV 137 (245)
Q Consensus 58 v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~ 137 (245)
+++++.+++ +|||+||... +.|+||||++|.|| |+.+||+||++||||+.+........+.. ....+..++
T Consensus 6 aii~~~~~~--~vLLvr~~~~-----~~W~lPGG~ve~gE-s~~~AA~REl~EETGl~v~~~~~~~~~~~-~~~~~~~~~ 76 (145)
T cd03672 6 AIILNEDLD--KVLLVKGWKS-----KSWSFPKGKINKDE-DDHDCAIREVYEETGFDISKYIDKDDYIE-LIIRGQNVK 76 (145)
T ss_pred EEEEeCCCC--EEEEEEecCC-----CCEECCCccCCCCc-CHHHHHHHHHHHhhCccceeccccceeee-cccCCcEEE
Confidence 334543234 7999998633 48999999999999 99999999999999998765321111111 111233445
Q ss_pred EEEEEeCCCCCCCCCC-CcccceeEEEEccccccccCC
Q 025996 138 PVIGILPDRNSFIPAP-NTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 138 ~~v~~~~~~~~~~~~~-~~~Ev~~v~wvpl~el~~~~~ 174 (245)
.|++..... .....+ +.+|+.++.|+|++++.+...
T Consensus 77 ~f~~~~~~~-~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 113 (145)
T cd03672 77 LYIVPGVPE-DTPFEPKTRKEISKIEWFDIKDLPTKKN 113 (145)
T ss_pred EEEEecCCC-CcccCcCChhhhheEEEeeHHHhhhhhh
Confidence 555433221 111122 347999999999999987654
No 51
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.68 E-value=6.2e-16 Score=121.11 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=74.2
Q ss_pred CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc-eEEEEeCCcccC----CceEEEEE
Q 025996 65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV-NVVTILDPIFTK----NGIIVVPV 139 (245)
Q Consensus 65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~-~~lg~l~~~~~~----~~~~v~~~ 139 (245)
++..+|||++|... +.|+||||++|.|| ++.+||+||++||||+..... .+++.+...... ....++.|
T Consensus 12 ~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E-~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f 85 (122)
T cd04666 12 GGEVEVLLVTSRRT-----GRWIVPKGGPEKDE-SPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVF 85 (122)
T ss_pred CCceEEEEEEecCC-----CeEECCCCCcCCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEE
Confidence 44568999998643 78999999999999 999999999999999998777 788887654432 13455555
Q ss_pred EEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 140 IGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 140 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.+.+.... . .....|+.++.|++++++.+.-
T Consensus 86 ~~~~~~~~--~-~~~~~e~~~~~W~~~~ea~~~~ 116 (122)
T cd04666 86 PLEVTEEL--D-EWPEMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred EEEEeccc--c-CCcccCceEEEEecHHHHHHhc
Confidence 55554321 1 1233577899999999987643
No 52
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.68 E-value=6.9e-16 Score=125.79 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=80.3
Q ss_pred CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--
Q 025996 52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF-- 129 (245)
Q Consensus 52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~-- 129 (245)
.+.+|.+++++ .+| +|||+||... +|.|++|||++++|| ++.+||.||++||||+.+..+.+++.+...+
T Consensus 7 ~~~~v~~~i~~-~~g--~vLL~~r~~~----~~~w~~P~G~~~~gE-~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y 78 (156)
T PRK00714 7 YRPNVGIILLN-RQG--QVFWGRRIGQ----GHSWQFPQGGIDPGE-TPEQAMYRELYEEVGLRPEDVEILAETRDWLRY 78 (156)
T ss_pred CCCeEEEEEEe-cCC--EEEEEEEcCC----CCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCccceEEEEEcCCeEEe
Confidence 34567777776 356 8999999843 488999999999999 9999999999999999998888887763211
Q ss_pred --c----------CCceEEEEEEEEeCCC-CCCCCCC-CcccceeEEEEcccccccc
Q 025996 130 --T----------KNGIIVVPVIGILPDR-NSFIPAP-NTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 130 --~----------~~~~~v~~~v~~~~~~-~~~~~~~-~~~Ev~~v~wvpl~el~~~ 172 (245)
. ..+...+.|++..... ....+.. +.+|+.++.|++++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~ 135 (156)
T PRK00714 79 DLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQ 135 (156)
T ss_pred cCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence 0 1112344555555321 1112222 3469999999999999763
No 53
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=9.3e-16 Score=118.16 Aligned_cols=100 Identities=23% Similarity=0.331 Sum_probs=72.4
Q ss_pred EEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCc--ceEEEEeCCccc-CC--
Q 025996 58 VCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSL--VNVVTILDPIFT-KN-- 132 (245)
Q Consensus 58 v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~--~~~lg~l~~~~~-~~-- 132 (245)
+++++ .++ ++||+||... |.|.||||+++++| ++++||+||++||||+.... ++.++.+..... ..
T Consensus 5 ~~v~~-~~~--~vLl~~r~~~-----~~w~~PgG~ve~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 75 (118)
T cd04690 5 ALILV-RDG--RVLLVRKRGT-----DVFYLPGGKIEAGE-TPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGV 75 (118)
T ss_pred EEEEe-cCC--eEEEEEECCC-----CcEECCCCccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCc
Confidence 33444 355 8999888643 68999999999999 99999999999999998887 888777654321 12
Q ss_pred ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996 133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171 (245)
Q Consensus 133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~ 171 (245)
...++.|.+.+.. ... ..+|+.++.|+|++++..
T Consensus 76 ~~~~~~f~~~~~~----~~~-~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 76 DVRATVYVAELTG----EPV-PAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EEEEEEEEEcccC----CcC-CCchhhccEEecHHHccc
Confidence 2344444444432 222 347999999999999844
No 54
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1.2e-15 Score=119.62 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=68.5
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc------c--CCceEEEEEE
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF------T--KNGIIVVPVI 140 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~------~--~~~~~v~~~v 140 (245)
+|||+||... ..+.|.+|||+++.|| ++++||.||+.||||+.+...+++....... . ......+.|.
T Consensus 13 ~vLl~~r~~~---~~~~~~lPGG~ve~gE-t~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 88 (128)
T cd04687 13 KILLIKHHDD---GGVWYILPGGGQEPGE-TLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFE 88 (128)
T ss_pred EEEEEEEEcC---CCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEE
Confidence 8999999643 3478999999999999 9999999999999999987666554433221 1 1222334455
Q ss_pred EEeCCCCCCCC--CCCcccceeEEEEccccccccCC
Q 025996 141 GILPDRNSFIP--APNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 141 ~~~~~~~~~~~--~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
+.......... ..+ .|..++.|+|++++.+...
T Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~~ 123 (128)
T cd04687 89 CKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDIPL 123 (128)
T ss_pred EEECCCCcccccCCCC-CCEEeeEEEcHHHhCcccc
Confidence 55543211111 122 3557899999999976543
No 55
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.2e-15 Score=118.89 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
+|||++|... ..+.|+||||++|.|| ++.+||.||++||||+.+....+++.... .+...+.|.+......
T Consensus 13 ~vLL~~r~~~---~~~~w~lPGG~ve~gE-s~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~g~- 83 (121)
T cd04669 13 EILLIRRIKP---GKTYYVFPGGGIEEGE-TPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYFLARVISGK- 83 (121)
T ss_pred EEEEEEEecC---CCCcEECCceeccCCC-CHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEEEEEEECCe-
Confidence 8999999754 2578999999999999 99999999999999999866666665443 2334556666554321
Q ss_pred CCC-------CCCcccceeEEEEccccccccC
Q 025996 149 FIP-------APNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 149 ~~~-------~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
... ..+.++..++.|++++++....
T Consensus 84 ~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~ 115 (121)
T cd04669 84 LGLGVGEEFERQSDDNQYHPVWVDLDQLETIP 115 (121)
T ss_pred ecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence 111 1123456789999999987643
No 56
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=2.3e-15 Score=117.35 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=74.5
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC--
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-- 131 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-- 131 (245)
.+|.+++++ ++ +|||++|.. .|.|+||||++++|| ++.+||+||++||||+......+++........
T Consensus 3 ~~v~~~i~~--~~--~vLL~~~~~-----~~~w~~PGG~ve~gE-s~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~ 72 (123)
T cd04672 3 VDVRAAIFK--DG--KILLVREKS-----DGLWSLPGGWADVGL-SPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPP 72 (123)
T ss_pred ceEEEEEEE--CC--EEEEEEEcC-----CCcEeCCccccCCCC-CHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCC
Confidence 345555665 34 789998865 489999999999999 999999999999999988666666655432211
Q ss_pred -Cc--eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996 132 -NG--IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 132 -~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.. .....|.+.+... ....+ +|+.++.|++++++.+..
T Consensus 73 ~~~~~~~~~~f~~~~~~~---~~~~~-~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 73 PQPYQVYKLFFLCEILGG---EFKPN-IETSEVGFFALDDLPPLS 113 (123)
T ss_pred CCceEEEEEEEEEEecCC---cccCC-CceeeeEEECHHHCcccc
Confidence 11 2223444554331 23344 789999999999986643
No 57
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.65 E-value=2.1e-15 Score=115.93 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=77.0
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
++||++|+... .++|.|+||||+++.+| ++.+||.||+.||||+++.....++...+.++.....+..|.+.....
T Consensus 14 ~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e-~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 89 (124)
T cd03425 14 RILIAQRPAGK-HLGGLWEFPGGKVEPGE-TPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSG-- 89 (124)
T ss_pred EEEEEEeCCCC-CCCCeEeCCCcccCCCC-CHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCC--
Confidence 89999998774 68999999999999999 999999999999999988777777777665555555666666554321
Q ss_pred CCCCCCcccceeEEEEcccccccc
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
...+.|..++.|++++++.+.
T Consensus 90 ---~~~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 90 ---EPQLLEHQELRWVPPEELDDL 110 (124)
T ss_pred ---CcccccCceEEEeeHHHcccC
Confidence 122567889999999998764
No 58
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=1.9e-15 Score=118.07 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=72.8
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC----CceEEEEEEEEeC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK----NGIIVVPVIGILP 144 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~----~~~~v~~~v~~~~ 144 (245)
+|||+||.. .+.|++|||++|.|| ++.+||.||++||||+.+....+++.....+.. .....+.|.+.+.
T Consensus 13 ~vLl~~~~~-----~~~w~lPgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 86 (126)
T cd04688 13 KLLVQKNPD-----ETFYRPPGGGIEFGE-SSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLL 86 (126)
T ss_pred EEEEEEeCC-----CCeEECCCccccCCC-CHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeC
Confidence 899999875 478999999999999 999999999999999999888888776533221 1233445555554
Q ss_pred CCCCCC----CCCCcccceeEEEEccccccccC
Q 025996 145 DRNSFI----PAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 145 ~~~~~~----~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
...... ...+.+|+.++.|++++++....
T Consensus 87 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 119 (126)
T cd04688 87 DESLYQQDIEILEEEGEKIVFRWIPIDELKEIK 119 (126)
T ss_pred CCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence 422110 01245789999999999998543
No 59
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2.8e-15 Score=114.96 Aligned_cols=91 Identities=24% Similarity=0.258 Sum_probs=71.0
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
+|||++|.. |.|+||||++++|| ++.+||.||++||||+.+..+..++.+.. .....+.|.+.+....
T Consensus 12 ~vLlv~r~~------~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~~~- 79 (112)
T cd04667 12 RVLLVRKSG------SRWALPGGKIEPGE-TPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVPPSA- 79 (112)
T ss_pred EEEEEEcCC------CcEeCCCCcCCCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcCCcC-
Confidence 899999863 78999999999999 99999999999999999888887777543 1233455666554321
Q ss_pred CCCCCCcccceeEEEEccccccccC
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
....++|+.++.|+|++++.+..
T Consensus 80 --~~~~~~e~~~~~W~~~~el~~~~ 102 (112)
T cd04667 80 --QPKPSNEIADCRWLSLDALGDLN 102 (112)
T ss_pred --CCCCchheeEEEEecHHHhhhcc
Confidence 12345799999999999997643
No 60
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=4.1e-15 Score=115.88 Aligned_cols=97 Identities=15% Similarity=0.286 Sum_probs=75.5
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
++|+++|... +.++|.|+||||+++.|| ++.+||.||+.||||+.+.....++...+.++.....++.|.+..... .
T Consensus 17 ~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge-~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~-~ 93 (128)
T TIGR00586 17 EIIITRRADG-HMFAKLLEFPGGKEEGGE-TPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGG-P 93 (128)
T ss_pred EEEEEEEeCC-CCCCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCC-C
Confidence 7999999876 478999999999999999 999999999999999988766667776666665556666666665432 1
Q ss_pred CCCCCCcccceeEEEEcccccccc
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
+...+..++.|++++++.+.
T Consensus 94 ----~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 94 ----PGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred ----cCcccccccEEeCHHHCCcc
Confidence 12345678899999988764
No 61
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.9e-15 Score=116.23 Aligned_cols=107 Identities=27% Similarity=0.298 Sum_probs=73.0
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc---cc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI---FT 130 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~---~~ 130 (245)
.+|.+++++ .++ ++||+||+.. |.|+||||+++.+| ++.+||.||++||||+++....+++.+... .+
T Consensus 3 ~~v~~ii~~-~~~--~vLl~~r~~~-----~~w~lPgG~v~~~E-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~ 73 (129)
T cd04676 3 PGVTAVVRD-DEG--RVLLIRRSDN-----GLWALPGGAVEPGE-SPADTAVREVREETGLDVEVTGLVGIYTGPVHVVT 73 (129)
T ss_pred ceEEEEEEC-CCC--eEEEEEecCC-----CcEECCeeccCCCC-CHHHHHHHHHHHHhCceeEeeEEEEEeecccceee
Confidence 345555555 345 8999999864 89999999999999 999999999999999988766665443221 11
Q ss_pred --CC---ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 131 --KN---GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 131 --~~---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.. ......|.+..... ....+.+|+.++.|++++++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 74 YPNGDVRQYLDITFRCRVVGG---ELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred cCCCCcEEEEEEEEEEEeeCC---eecCCCCceeEEEEEChhhCccc
Confidence 11 12222333333321 12235578899999999998764
No 62
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.64 E-value=5.1e-15 Score=116.36 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCcEEEEEEEeCCC--CCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEE
Q 025996 64 NDGDLRVFLTKRSSN--LSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIG 141 (245)
Q Consensus 64 ~~g~~~vLL~rR~~~--~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~ 141 (245)
.++.++|||++|... ++...|.|+||||+++.+| ++.+||+||++||||+... ...+. +..+....+..++.|++
T Consensus 11 ~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E-~~~~aA~REl~EEtGl~~~-~~~~~-l~~~~~~~~~~v~~fl~ 87 (126)
T cd04662 11 RDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGE-DPLLAAKREFSEETGFCVD-GPFID-LGSLKQSGGKVVHAWAV 87 (126)
T ss_pred cCCcEEEEEEEccCccccCCCCCEEECCcccCCCCc-CHHHHHHHHHHHHhCCcce-eeEEe-EEEEECCCCeEEEEEEE
Confidence 456779999998543 2366789999999999999 9999999999999999865 22222 22222223335566655
Q ss_pred EeCCCC-------------CCCCCCC-cccceeEEEEcc
Q 025996 142 ILPDRN-------------SFIPAPN-TAEVDAIFDAPL 166 (245)
Q Consensus 142 ~~~~~~-------------~~~~~~~-~~Ev~~v~wvpl 166 (245)
....+. ....... .+|++++.|+|+
T Consensus 88 ~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 88 EADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred EecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 544211 1112222 478888888874
No 63
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.63 E-value=5.5e-15 Score=116.42 Aligned_cols=105 Identities=22% Similarity=0.164 Sum_probs=75.9
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN 132 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~ 132 (245)
+.+|.+++++ ++ +|||+||... ...|.|++|||++|.|| ++++||+||++||||+++....+++..... . .
T Consensus 13 ~~~v~~ii~~--~~--~vLL~kr~~~--~~~g~w~lPgG~ve~gE-~~~~a~~REl~EEtGl~~~~~~~~~~~~~~-~-~ 83 (130)
T cd04511 13 KIIVGCVPEW--EG--KVLLCRRAIE--PRHGFWTLPAGFMENGE-TTEQGALRETWEEAGARVEIDGLYAVYSVP-H-I 83 (130)
T ss_pred cEEEEEEEec--CC--EEEEEEecCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCEEEeeeEEEEEecC-C-c
Confidence 3444444454 34 8999999764 46789999999999999 999999999999999988666666655321 1 2
Q ss_pred ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996 133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL 170 (245)
Q Consensus 133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~ 170 (245)
....+.|.+.+... . ... ..|..++.|++++++.
T Consensus 84 ~~~~~~f~~~~~~~-~--~~~-~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 84 SQVYMFYRARLLDL-D--FAP-GPESLEVRLFTEEEIP 117 (130)
T ss_pred eEEEEEEEEEEcCC-c--ccC-CcchhceEEECHHHCC
Confidence 23455667766542 1 222 3678899999999985
No 64
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4.7e-15 Score=117.20 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=71.8
Q ss_pred EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC-CcceEEEEeCCcc---cC
Q 025996 56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP-SLVNVVTILDPIF---TK 131 (245)
Q Consensus 56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~-~~~~~lg~l~~~~---~~ 131 (245)
|.+++++ ++ +|||++|... +.|+||||++|+|| ++.+||+||++||||+.. .....++.+..+. ..
T Consensus 3 ~~~ii~~--~~--~vLLv~~~~~-----~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~ 72 (131)
T cd04686 3 VRAIILQ--GD--KILLLYTKRY-----GDYKFPGGGVEKGE-DHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKP 72 (131)
T ss_pred EEEEEEE--CC--EEEEEEEcCC-----CcEECccccCCCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCC
Confidence 3344454 35 7999998642 57999999999999 999999999999999986 4455666654221 11
Q ss_pred ----CceEEEEEEEEeCCCCCCCCCCCcccc---eeEEEEccccccccC
Q 025996 132 ----NGIIVVPVIGILPDRNSFIPAPNTAEV---DAIFDAPLEMFLKDE 173 (245)
Q Consensus 132 ----~~~~v~~~v~~~~~~~~~~~~~~~~Ev---~~v~wvpl~el~~~~ 173 (245)
.....+.|++.+.... .....++.|. ..+.|+|++++....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 73 DADIFHMISYYYLCEVDAEL-GAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred CCceeEEEEEEEEEEEcCCc-CCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 1233456666665422 2233443343 358999999988754
No 65
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.62 E-value=3.2e-15 Score=131.17 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=80.6
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG 133 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 133 (245)
.+|++++.+ ++ +|||+||... .+|.|++|||++|+|| |+++||.||++|||||++..+++++.....+ ..
T Consensus 133 paViv~V~~--~~--~iLL~rr~~~---~~g~wslPgG~vE~GE-s~eeAa~REv~EEtGl~v~~~~~~~s~~~~~--p~ 202 (256)
T PRK00241 133 PCIIVAVRR--GD--EILLARHPRH---RNGVYTVLAGFVEVGE-TLEQCVAREVMEESGIKVKNLRYVGSQPWPF--PH 202 (256)
T ss_pred CEEEEEEEe--CC--EEEEEEccCC---CCCcEeCcccCCCCCC-CHHHHhhhhhhhccCceeeeeEEEEeEeecC--CC
Confidence 345554443 34 8999998754 2789999999999999 9999999999999999998888888764322 23
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..++.|.+.+... .+.++++|+.++.|++++++...
T Consensus 203 ~lm~~f~a~~~~~---~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 203 SLMLGFHADYDSG---EIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred eEEEEEEEEecCC---cccCCcccEEEEEEECHHHCccc
Confidence 3456677766532 24567789999999999997543
No 66
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.61 E-value=3e-15 Score=125.44 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=83.5
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCC----CCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNL----SSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT 130 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~----~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~ 130 (245)
+|.|++++.+++ +|||+++-+.. +..++.|+||||++|+|| ++++||+||++||||+....++.++.+.....
T Consensus 46 ~v~vl~~~~~~~--~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE-~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g 122 (185)
T TIGR00052 46 AAAVLLYDPKKD--TVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGE-SPEDVARREAIEEAGYQVKNLRKLLSFYSSPG 122 (185)
T ss_pred eEEEEEEECCCC--EEEEEECceeeeeecCCcceEEEECcEecCCCC-CHHHHHHHHccccccceecceEEEEEEEcCCC
Confidence 455555543334 78888765431 115678999999999999 99999999999999999999998888765555
Q ss_pred CCceEEEEEEEEeCCCCCC-CCCCCcccceeEEEEcccccccc
Q 025996 131 KNGIIVVPVIGILPDRNSF-IPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 131 ~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+...++.|++.+...... ....+++|..++.|+|++++.+.
T Consensus 123 ~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~ 165 (185)
T TIGR00052 123 GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW 165 (185)
T ss_pred CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence 5667788888876542111 11234467778999999988764
No 67
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.60 E-value=1.2e-14 Score=110.65 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=77.7
Q ss_pred EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc--CCc
Q 025996 56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT--KNG 133 (245)
Q Consensus 56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~--~~~ 133 (245)
+.+++++ .++ ++||++|... ++|.|+||||+++.+| ++.+||+||++||+|+.+.....++.+..... ...
T Consensus 3 ~~~i~~~-~~~--~ill~kr~~~---~~~~~~~p~G~~~~~e-~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd02883 3 VGAVILD-EDG--RVLLVRRADS---PGGLWELPGGGVEPGE-TLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEH 75 (123)
T ss_pred eEEEEEC-CCC--CEEEEEEcCC---CCCeEeCCcccccCCC-CHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCce
Confidence 3444454 334 7999999875 6799999999999999 99999999999999998865555554433322 344
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..+..|.+.+..... . ..+..|+.++.|++++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~-~-~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 76 AVVFVFLARLVGGEP-T-LLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred EEEEEEEEEeCCCCc-C-CCCCCccceEEEEcHHHCccc
Confidence 555566666554211 1 245678899999999999873
No 68
>PLN02791 Nudix hydrolase homolog
Probab=99.59 E-value=9.5e-15 Score=143.82 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=88.0
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeC
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILD 126 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~ 126 (245)
+..+.+|.|+|++..++ +||||||+..+..|||.|++ +|||++.|| +..+||+||++||+||.+. .+.+++.+.
T Consensus 29 Gl~HrAvhVwIfn~~~g--elLLQkRS~~K~~~PG~WDiS~gGHv~aGE-s~~eAA~REL~EELGI~l~~~~l~~l~~~~ 105 (770)
T PLN02791 29 GDYHRAVHVWIYSESTQ--ELLLQRRADCKDSWPGQWDISSAGHISAGD-TSLLSAQRELEEELGIILPKDAFELLFVFL 105 (770)
T ss_pred CCceEEEEEEEEECCCC--eEEEEEecCCCCCCCCcccCcCCCCCCCCC-CHHHHHHHHHHHHhCCCCChhheeeeeeEE
Confidence 67899999999984345 89999999999999999999 799999999 8899999999999999753 345555431
Q ss_pred Cc-c-cC----CceEEEEEEEEeCCC-CCCCCCCCcccceeEEEEccccccc
Q 025996 127 PI-F-TK----NGIIVVPVIGILPDR-NSFIPAPNTAEVDAIFDAPLEMFLK 171 (245)
Q Consensus 127 ~~-~-~~----~~~~v~~~v~~~~~~-~~~~~~~~~~Ev~~v~wvpl~el~~ 171 (245)
.. . .. .....+.|++..... ......++++||+++.|++++++.+
T Consensus 106 ~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~ 157 (770)
T PLN02791 106 QECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS 157 (770)
T ss_pred EEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence 11 1 11 112334444433221 1124567899999999999999974
No 69
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.58 E-value=2.1e-14 Score=121.95 Aligned_cols=114 Identities=17% Similarity=0.054 Sum_probs=83.6
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCC-----CCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSS-----HSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF 129 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~-----~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~ 129 (245)
+|+|+.+..+++ +|+|++.-+.. . .+-.|+||+|.+|+|| ++++||+||+.||||+.+..++.++.+....
T Consensus 51 ~V~il~~~~~~~--~vlLvrQyR~~-~~~~~~~~~~lE~PAG~vd~gE-~p~~aA~REL~EETGy~a~~~~~l~~~~~sp 126 (202)
T PRK10729 51 AAVLLPFDPVRD--EVVLIEQIRIA-AYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVGRTKPVLSYLASP 126 (202)
T ss_pred eEEEEEEECCCC--EEEEEEeeecc-cccCCCCCeEEEccceEcCCCC-CHHHHHHHHHHHHhCceeeEEEEEEEEEcCC
Confidence 344444442334 67777765431 2 2346999999999999 9999999999999999999888888776666
Q ss_pred cCCceEEEEEEEEeCCC--CCCCCCCCcccceeEEEEcccccccc
Q 025996 130 TKNGIIVVPVIGILPDR--NSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 130 ~~~~~~v~~~v~~~~~~--~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
+.+...++.|++..... .......+++|..++.|+|++++.+.
T Consensus 127 g~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~ 171 (202)
T PRK10729 127 GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 171 (202)
T ss_pred CcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence 66777888999886321 11112356788889999999998764
No 70
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.57 E-value=3e-14 Score=129.90 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=75.3
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCC---c--
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDP---I-- 128 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~---~-- 128 (245)
.+|.++++. +| +|||++|... +.+|.|++|||++|+|| ++++||+||++|||||++....+.+.+.. +
T Consensus 204 vtv~avv~~--~g--~VLLvrR~~~--p~~g~W~lPGG~ve~gE-t~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~ 276 (340)
T PRK05379 204 VTVDAVVVQ--SG--HVLLVRRRAE--PGKGLWALPGGFLEQDE-TLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH 276 (340)
T ss_pred eEEEEEEEE--CC--EEEEEEecCC--CCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence 344444443 45 8999999875 56899999999999999 99999999999999998765443333211 1
Q ss_pred cc---CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 129 FT---KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 129 ~~---~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.. ......+.|.+.+........ ...+|+.++.|+|++++...
T Consensus 277 p~r~~~~~~i~~~f~~~~~~~~~~~~-~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 277 PGRSLRGRTITHAFLFEFPAGELPRV-KGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCCcEEEEEEEEEecCCccCcc-CCCCceeeEEEEEHHHhhhh
Confidence 11 112344556665543211122 24478999999999998753
No 71
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.56 E-value=3.7e-14 Score=123.53 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=81.6
Q ss_pred CCCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCC----------------CHHHHHHHHHHHH
Q 025996 49 STKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDA----------------DDAGTALREAKEE 111 (245)
Q Consensus 49 ~~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~----------------s~~~aA~REl~EE 111 (245)
.+..+.|+.++|++ .+| +||||||+..+..+||.|+.. ||++..||+ +..+||+||++||
T Consensus 52 ~gl~Hra~~v~i~n-~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EE 128 (247)
T PLN02552 52 RGLLHRAFSVFLFN-SKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHE 128 (247)
T ss_pred CCceEEEEEEEEEc-CCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHH
Confidence 36788999999987 466 899999999998999999665 455544421 1678999999999
Q ss_pred HCCCCCc-----ceEEEEeCCcccCC------c----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 112 IGLDPSL-----VNVVTILDPIFTKN------G----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 112 tGl~~~~-----~~~lg~l~~~~~~~------~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
|||+... +.+++.+....... + ..+..+++. .......+.++++||.++.|++++++.+.
T Consensus 129 lGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~ 203 (247)
T PLN02552 129 LGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEM 203 (247)
T ss_pred hCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHH
Confidence 9998543 44455432211111 1 222222222 11112246789999999999999999874
No 72
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=5.5e-14 Score=111.74 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=73.1
Q ss_pred EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC-CcceEEEEeCCcc---cC
Q 025996 56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP-SLVNVVTILDPIF---TK 131 (245)
Q Consensus 56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~-~~~~~lg~l~~~~---~~ 131 (245)
+.+++++ .+| +|||++|.......++.|.+|||+++.|| ++.+||.||++||||+.. .....+......+ ..
T Consensus 3 ~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~gE-~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~ 78 (133)
T cd04685 3 ARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPGE-SPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV 78 (133)
T ss_pred EEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc
Confidence 4455565 355 89999988753346789999999999999 999999999999999988 4444443322111 11
Q ss_pred -CceEEEEEEEEeCCCCCCCCC---CCcccceeEEEEcccccccc
Q 025996 132 -NGIIVVPVIGILPDRNSFIPA---PNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 132 -~~~~v~~~v~~~~~~~~~~~~---~~~~Ev~~v~wvpl~el~~~ 172 (245)
.....+.|++........... ...+++.++.|+++++|.+.
T Consensus 79 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 79 DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 112334455554421111111 11235678999999999875
No 73
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.52 E-value=6.9e-14 Score=110.75 Aligned_cols=94 Identities=20% Similarity=0.061 Sum_probs=66.4
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeC-----Ccc-------cCCceEE
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILD-----PIF-------TKNGIIV 136 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~-----~~~-------~~~~~~v 136 (245)
++||+||... ..|.|+||||++|+|| |+.+||.||++||||+.+.. .+++... ..+ ...+..+
T Consensus 14 ~~Llvk~~~~---~~g~W~fPgG~ve~gE-t~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (132)
T cd04661 14 LVLLVQQKVG---SQNHWILPQGKREEGE-TLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV 88 (132)
T ss_pred EEEEEEeecC---CCCeeECCcccccCCC-CHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence 7899988653 2689999999999999 99999999999999997653 3333211 100 0112355
Q ss_pred EEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996 137 VPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171 (245)
Q Consensus 137 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~ 171 (245)
+.|.+.+... ...++ +|+.++.|++++++.+
T Consensus 89 ~~f~~~~~~g---~~~~~-~e~~~~~W~~~~el~~ 119 (132)
T cd04661 89 FFFKARYMSG---QFELS-QNQVDFKWLAKEELQK 119 (132)
T ss_pred EEEEEEEecC---ccccC-CCcceeEecCHHHHHh
Confidence 6666666542 22233 7899999999999875
No 74
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.51 E-value=1.6e-13 Score=115.54 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=82.5
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCC------CCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSS------HSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI 128 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~------~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~ 128 (245)
+|+|++++.+++ +|+|++.-+.. . ..-.|++|+|.+|. + ++++||+||++||||+.+..++.++.+...
T Consensus 47 ~v~Vl~~~~~~~--~vvLvrQyR~~-v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~~~~~l~~~~~s 121 (191)
T PRK15009 47 GATILLYNAKKK--TVVLIRQFRVA-TWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVGEVRKLFELYMS 121 (191)
T ss_pred EEEEEEEECCCC--EEEEEEccccc-ccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccceEEEeeEEEcC
Confidence 344444543344 78888766542 2 33458999999996 4 589999999999999999999999888766
Q ss_pred ccCCceEEEEEEEEeCCCCC-CCCCCCcccceeEEEEcccccccc
Q 025996 129 FTKNGIIVVPVIGILPDRNS-FIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 129 ~~~~~~~v~~~v~~~~~~~~-~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+.+...++.|++....... .....+++|..++.|+|++++.+.
T Consensus 122 pG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~ 166 (191)
T PRK15009 122 PGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM 166 (191)
T ss_pred CcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence 66677788889888642211 111245788999999999998764
No 75
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.50 E-value=3.4e-13 Score=105.17 Aligned_cols=100 Identities=22% Similarity=0.209 Sum_probs=73.3
Q ss_pred EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceE
Q 025996 56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGII 135 (245)
Q Consensus 56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~ 135 (245)
|+++++. ++ ++||+++.. +.|+||||+++.+| ++++||+||++||+|+....+..++.+..........
T Consensus 3 v~vi~~~--~~--~vLl~~~~~------~~w~lPgG~ve~gE-~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~ 71 (118)
T cd04665 3 VLVICFY--DD--GLLLVRHKD------RGWEFPGGHVEPGE-TIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFE 71 (118)
T ss_pred EEEEEEE--CC--EEEEEEeCC------CEEECCccccCCCC-CHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEE
Confidence 4444444 34 789988752 46999999999999 9999999999999999999999998875443333445
Q ss_pred EEEEEEEeCCCCCCCCCCCcccceeEEEEccccc
Q 025996 136 VVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMF 169 (245)
Q Consensus 136 v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el 169 (245)
...|.+.+..... .. ...|+....|++....
T Consensus 72 ~~~y~a~~~~~~~--~~-~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 72 TLVYPAVSAQLEE--KA-SYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEEEEEeccc--cc-ccccccCcEEeccCCc
Confidence 5566666654322 12 3489999999986643
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=7.1e-13 Score=103.34 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=39.6
Q ss_pred EEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC
Q 025996 70 VFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS 117 (245)
Q Consensus 70 vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~ 117 (245)
+||.+|... +.+|.|+||||++|++| ++.+||.||++||||+...
T Consensus 17 ~lL~~r~~~--~~~~~w~lPgG~ve~~E-~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 17 LLVIRRGIE--PGRGKLALPGGFIELGE-TWQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEeecC--CCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCccc
Confidence 666677653 56899999999999999 9999999999999999875
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.49 E-value=3e-13 Score=121.52 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=75.7
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
+|||+||... +.++|.|+||||+++.|| ++.+||.||++||||+.+.....++...+.++.....++.|.+.....
T Consensus 18 ~vLL~kR~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~-- 93 (312)
T PRK08999 18 RILLARRPEG-KHQGGLWEFPGGKVEPGE-TVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG-- 93 (312)
T ss_pred eEEEEEecCC-CCCCCeEECCccCCCCCC-CHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC--
Confidence 7999999876 478999999999999999 999999999999999987776666666655555555666665443221
Q ss_pred CCCCCCcccceeEEEEccccccccC
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~~ 173 (245)
.++..|..++.|++++++.+-.
T Consensus 94 ---~~~~~e~~~~~Wv~~~el~~~~ 115 (312)
T PRK08999 94 ---EPHGREGQPLAWVAPDELAVYP 115 (312)
T ss_pred ---cccCccCCccEEecHHHcccCC
Confidence 1334677888999999987743
No 78
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.46 E-value=1.2e-12 Score=103.17 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=60.7
Q ss_pred CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc-eEEEEeCCcccCCceEEEEEEEEe
Q 025996 65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV-NVVTILDPIFTKNGIIVVPVIGIL 143 (245)
Q Consensus 65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~-~~lg~l~~~~~~~~~~v~~~v~~~ 143 (245)
+++.+|++.+.+. +.|.||||+++++| ++.+||.||++||||+..... ..++............++.+++.+
T Consensus 11 ~~~~~ll~~r~~~------~~~~lPgG~ve~~E-~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (126)
T cd04663 11 GEVLELLVFEHPL------AGFQIVKGTVEPGE-TPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCEV 83 (126)
T ss_pred CceEEEEEEEcCC------CcEECCCccCCCCC-CHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEEe
Confidence 3346777776543 35999999999999 999999999999999986211 112222222212233444444444
Q ss_pred C----CCCCCCCCCCcccceeEEEEccccccc
Q 025996 144 P----DRNSFIPAPNTAEVDAIFDAPLEMFLK 171 (245)
Q Consensus 144 ~----~~~~~~~~~~~~Ev~~v~wvpl~el~~ 171 (245)
. .........+..+...++|+|++++.+
T Consensus 84 ~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 84 DQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred cCCCcccccCcccCCCCceEEEEEEccccccc
Confidence 2 111111222344555677999999844
No 79
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.45 E-value=9.3e-13 Score=107.31 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=70.0
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
++||+++.. ..|+||||++|+|| ++++||.||++||||+.+..+.+++.+...........+.|++.+...
T Consensus 36 ~~LL~~~~~------~~~elPgG~vE~gE-t~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~-- 106 (156)
T TIGR02705 36 QWLLTEHKR------RGLEFPGGKVEPGE-TSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL-- 106 (156)
T ss_pred EEEEEEEcC------CcEECCceecCCCC-CHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc--
Confidence 688887653 24999999999999 999999999999999999999999987665444556667777777632
Q ss_pred CCCCCCcccceeEE-EEcccccccc
Q 025996 149 FIPAPNTAEVDAIF-DAPLEMFLKD 172 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~-wvpl~el~~~ 172 (245)
. .. +|..++. +++++++.+.
T Consensus 107 -~--~~-~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 107 -E--SK-DDYLETKGPVLLQEIPDI 127 (156)
T ss_pred -c--cC-CCceeeEeEEEHHHHHHH
Confidence 1 22 5555555 7999988664
No 80
>PLN03143 nudix hydrolase; Provisional
Probab=99.41 E-value=2.3e-12 Score=114.58 Aligned_cols=53 Identities=30% Similarity=0.443 Sum_probs=42.3
Q ss_pred CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCc
Q 025996 65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSL 118 (245)
Q Consensus 65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~ 118 (245)
+++.+|+|+++.+.. ...-.|+||||++|++++++++||+||++||||+.+..
T Consensus 140 ~ge~~VlLVrQ~R~p-vg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a 192 (291)
T PLN03143 140 EGETYAVLTEQVRVP-VGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKL 192 (291)
T ss_pred CCCEEEEEEEeEecC-CCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCcccc
Confidence 465579999988642 33448999999999863399999999999999998653
No 81
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.37 E-value=7.8e-12 Score=104.64 Aligned_cols=46 Identities=33% Similarity=0.328 Sum_probs=40.9
Q ss_pred CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC
Q 025996 65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP 116 (245)
Q Consensus 65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~ 116 (245)
++.++||+++|+. .|.|+||||++|++| ++.+||.||++||||+..
T Consensus 46 ~~~l~vLl~~r~~-----~g~walPGG~v~~~E-~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 46 KPILQFVAIKRPD-----SGEWAIPGGMVDPGE-KISATLKREFGEEALNSL 91 (186)
T ss_pred CCeeEEEEEEeCC-----CCcCcCCeeeccCCC-CHHHHHHHHHHHHHcccc
Confidence 4578999999965 389999999999999 999999999999997653
No 82
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.36 E-value=8.8e-12 Score=96.92 Aligned_cols=112 Identities=23% Similarity=0.221 Sum_probs=71.0
Q ss_pred EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHH-HHHHHHHHHHCCCCC--cceEEEEeCCcccC
Q 025996 55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAG-TALREAKEEIGLDPS--LVNVVTILDPIFTK 131 (245)
Q Consensus 55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~-aA~REl~EEtGl~~~--~~~~lg~l~~~~~~ 131 (245)
++.+++..... .+||+++|.... +.|+||||++|.+| ++.+ ||+||++||||+... ....++.+......
T Consensus 13 ~~~~~~~~~~~--~~vl~~~~~~~~----~~~~~PgG~ve~~e-~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 85 (161)
T COG0494 13 AVAVLVGRDGP--GEVLLAQRRDDG----GLWELPGGKVEPGE-ELPEEAAARELEEETGLRVKDERLELLGEFPPSPGD 85 (161)
T ss_pred eEEEEEecCCC--CEEeEEEccccC----CceecCCcccCCCC-chHHHHHHHHHHHHhCCeeeeecceeeeeccCcccC
Confidence 44444444222 389999988763 79999999999999 4477 999999999999888 56667776554332
Q ss_pred Cc-----eEEEEEEEEeCCCCCCCCCCC---cccceeEEEEccccccccC
Q 025996 132 NG-----IIVVPVIGILPDRNSFIPAPN---TAEVDAIFDAPLEMFLKDE 173 (245)
Q Consensus 132 ~~-----~~v~~~v~~~~~~~~~~~~~~---~~Ev~~v~wvpl~el~~~~ 173 (245)
.. .....+............... ..|...+.|+++.++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 135 (161)
T COG0494 86 GSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV 135 (161)
T ss_pred cccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence 21 112222222111111111111 2578899999998877654
No 83
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.35 E-value=8.1e-12 Score=103.44 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=78.3
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc--eEEEEeCCcccC
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV--NVVTILDPIFTK 131 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~--~~lg~l~~~~~~ 131 (245)
-+|+|+.+-..+|++.++|+|.-+. ....-.++||+|.+|.|| ++++||+||++||||+.-..+ .....+++-++.
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRp-P~Gk~ciElPAGLiD~ge-~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn 151 (225)
T KOG3041|consen 74 DGVAILAILESDGKPYIVLVKQFRP-PTGKICIELPAGLIDDGE-DFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTN 151 (225)
T ss_pred CeEEEEEEEecCCcEEEEEEEeecC-CCCcEEEEcccccccCCC-chHHHHHHHHHHHhCccceeeeccccEEcCCCCCC
Confidence 3444433333589999999987654 133335789999999999 999999999999999973322 234555555555
Q ss_pred CceEEEEEEEEeCCCC--CCCCCCCcccceeEEEEcccccccc
Q 025996 132 NGIIVVPVIGILPDRN--SFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 132 ~~~~v~~~v~~~~~~~--~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
....+..+.......+ .....++..|..+++-+|+.+|.+.
T Consensus 152 ~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~ 194 (225)
T KOG3041|consen 152 CNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE 194 (225)
T ss_pred CceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence 4444443333222222 2223567789999999999998764
No 84
>PLN02839 nudix hydrolase
Probab=99.33 E-value=9.7e-12 Score=112.80 Aligned_cols=161 Identities=19% Similarity=0.155 Sum_probs=110.6
Q ss_pred CCchhHHHHHHHHhhcCCCCCCCccccccccccCcc----------ccccCCCCCceEEEEEEEEcCCCcEEEEEEEeCC
Q 025996 8 DRSERLETLVQRLRLYNERHQNPVTEREAVDSQDSY----------SVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSS 77 (245)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~r~aaV~v~l~~~~~g~~~vLL~rR~~ 77 (245)
.++..+..++++++.-.- -.-+++|...=..++ ++.++.+.+..+|.+--+...+++.++++.||+.
T Consensus 151 ~Rt~al~~v~~~lr~~g~---~~gWRnE~y~V~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~ 227 (372)
T PLN02839 151 DRTRAVADVIKILGDKGI---IPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSL 227 (372)
T ss_pred HHHHHHHHHHHHHHHcCC---CCCcccCccccccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCC
Confidence 344566677777776322 112455554111211 5667788889999875443346777999999999
Q ss_pred CCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCC---cceEEEEeCCccc-CCce-EEEEEEEEeCCCCCCCC
Q 025996 78 NLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPS---LVNVVTILDPIFT-KNGI-IVVPVIGILPDRNSFIP 151 (245)
Q Consensus 78 ~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~---~~~~lg~l~~~~~-~~~~-~v~~~v~~~~~~~~~~~ 151 (245)
.|..+||+| .+.||.+..|| ++.+|++||+.||.||+.. .+...|.+...+. ..+. .-..|++.+.-+.++.+
T Consensus 228 tK~t~PGmLDn~VAGGi~aGe-sp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~df~P 306 (372)
T PLN02839 228 SKSTYPGMLDHLVAGGLPHGI-SCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVP 306 (372)
T ss_pred CCCCCCChhhhccccCccCCC-CHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCcccc
Confidence 999999999 56899999999 9999999999999999865 4445666654421 1121 11122333333335667
Q ss_pred CCCcccceeEEEEcccccccc
Q 025996 152 APNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 152 ~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.++++||+++.+++++++++.
T Consensus 307 ~~qDGEVe~F~Lm~v~EV~~~ 327 (372)
T PLN02839 307 KNQDGEVESFKLIPVAQVANV 327 (372)
T ss_pred CCCccceeEEEEecHHHHHHH
Confidence 788999999999999999764
No 85
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.27 E-value=5.4e-12 Score=110.59 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=83.1
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG 133 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 133 (245)
-+|++++.+ .+ ++||-++.++ ++|.++.-+|.||+|| |+++|+.||++||+||.+..+.++++.+..+..+
T Consensus 145 P~vIv~v~~--~~--~ilLa~~~~h---~~g~yS~LAGFVE~GE-TlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~S- 215 (279)
T COG2816 145 PCVIVAVIR--GD--EILLARHPRH---FPGMYSLLAGFVEPGE-TLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHS- 215 (279)
T ss_pred CeEEEEEec--CC--ceeecCCCCC---CCcceeeeeecccCCc-cHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchh-
Confidence 345444444 23 4888887764 4899999999999999 9999999999999999999999999887655433
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+.-|.+.+... .+.+|..|++++.|++.++++..
T Consensus 216 -LMigf~aey~sg---eI~~d~~Eleda~WFs~~evl~~ 250 (279)
T COG2816 216 -LMLGFMAEYDSG---EITPDEGELEDARWFSRDEVLPA 250 (279)
T ss_pred -hhhhheeeeccc---cccCCcchhhhccccCHhHHhhh
Confidence 345566666643 36788899999999999995543
No 86
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.22 E-value=2.6e-12 Score=113.27 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=75.8
Q ss_pred eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996 54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG 133 (245)
Q Consensus 54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 133 (245)
-.|+++|++ .++ +.+|..|.. +.-+|.|+.++|.+|+|| |+++||+||++||+|++++.+.+....+.......
T Consensus 188 PvVIm~li~-~d~--~~~LL~R~~--r~~~gl~t~lAGFlEpGE-S~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~S 261 (345)
T KOG3084|consen 188 PVVIMLLID-HDG--KHALLGRQK--RYPPGLWTCLAGFLEPGE-SIEEAVRRETWEETGIEVEVISYVASQPWPLMPQS 261 (345)
T ss_pred CeEEEEEEc-CCC--CEeeeeccc--CCCCchhhhhhccCCccc-cHHHHHHHHHHHHhCceeeeEeeeecCCCCCCchH
Confidence 445556665 455 344555533 467799999999999999 99999999999999999999987777655412111
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcc-cceeEEEEcccccccc
Q 025996 134 IIVVPVIGILPDRNSFIPAPNTA-EVDAIFDAPLEMFLKD 172 (245)
Q Consensus 134 ~~v~~~v~~~~~~~~~~~~~~~~-Ev~~v~wvpl~el~~~ 172 (245)
+ +..+++.... ...+..+.+ |.+++.|++-+++.+.
T Consensus 262 L-MIgc~ala~~--~~~I~vd~dlEleDaqwF~r~ev~~a 298 (345)
T KOG3084|consen 262 L-MIGCLALAKL--NGKISVDKDLELEDAQWFDREEVKSA 298 (345)
T ss_pred H-HHHHHHHHhh--CCccccCcchhhhhcccccHHHHHHH
Confidence 1 1111111111 123456777 9999999999988764
No 87
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.12 E-value=2.4e-10 Score=90.59 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=75.2
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF 129 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~ 129 (245)
+.|..+-.|++.. +....+|||+.=++. +-.|-||+|++|++| +..+||+||+.||.|+.....+.++....+.
T Consensus 7 G~r~vagCi~~r~-~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE-~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~ 80 (145)
T KOG2839|consen 7 GFRLVAGCICYRS-DKEKIEVLLVSSSKK----PHRWIVPKGGWEPDE-SVEEAALRETWEEAGVKGKLGRLLGGFEDFL 80 (145)
T ss_pred CcEEEEEeeeeee-cCcceEEEEEecCCC----CCCccCCCCCCCCCC-CHHHHHHHHHHHHhCceeeeeccccchhhcc
Confidence 5555555555443 233579999985543 346999999999999 9999999999999999887777555554333
Q ss_pred cC-CceEEEEEEEEeCCCCCCCCCCC-cccceeEEEEcccccccc
Q 025996 130 TK-NGIIVVPVIGILPDRNSFIPAPN-TAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 130 ~~-~~~~v~~~v~~~~~~~~~~~~~~-~~Ev~~v~wvpl~el~~~ 172 (245)
+. .......+++.+.........++ ..|.-+..|+.+++....
T Consensus 81 ~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~ 125 (145)
T KOG2839|consen 81 SKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIEL 125 (145)
T ss_pred ChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHH
Confidence 22 22223333433332222222222 235788999999987653
No 88
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.09 E-value=1.4e-10 Score=94.53 Aligned_cols=115 Identities=21% Similarity=0.241 Sum_probs=85.7
Q ss_pred ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--
Q 025996 53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF-- 129 (245)
Q Consensus 53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~-- 129 (245)
+.|..+.|++ .+| ++|++||+..|+.|||.|.- ..||--+|| +..+||+|-+.+|+||.+.....+..++.+.
T Consensus 33 HrAFS~~lFn-e~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~e-s~~~A~~rRl~~ELGie~~~~d~~~il~rf~Yr 108 (185)
T COG1443 33 HRAFSSFLFN-ERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPGE-SNEDAARRRLAYELGIEPDQYDKLEILPRFRYR 108 (185)
T ss_pred HhhhheeEEC-CCC--ceeeehhhhhcccCcccccccccCCCcCCC-chHHHHHHHHHHHhCCCCcccCccccccceEEe
Confidence 6677778887 567 89999999999999999966 478888999 9999999999999999988544443333321
Q ss_pred --cCCc---eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996 130 --TKNG---IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 130 --~~~~---~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
+..+ ..|.++++.... ..+.+|++||.++.|++.++|.+.-.
T Consensus 109 A~~~~~~~E~Eic~V~~~~~~---~~~~~npdEV~~~~wv~~e~l~~~~~ 155 (185)
T COG1443 109 AADPDGIVENEICPVLAARLD---SALDPNPDEVMDYRWVSPEDLKEMVD 155 (185)
T ss_pred ccCCCCcceeeeeeEEEEeec---CCCCCChHHhhheeccCHHHHHHhhc
Confidence 1122 234444333222 14578999999999999999987644
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.03 E-value=3.5e-09 Score=80.77 Aligned_cols=91 Identities=22% Similarity=0.209 Sum_probs=68.4
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
++||+||... +.++|+|+||+|.++.++ +.+++..||+.||.++ ....++.+.+.++.....+++|.+......
T Consensus 15 ~~ll~kR~~~-gl~~glwefP~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~~~~~~- 88 (118)
T cd03431 15 RVLLEKRPEK-GLLAGLWEFPSVEWEEEA-DGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLARLEGDL- 88 (118)
T ss_pred eEEEEECCCC-CCCCcceeCCCccccCCc-CHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEEEeCCC-
Confidence 7999999876 689999999999999988 7888888999998775 223356666666766667777766554210
Q ss_pred CCCCCCcccceeEEEEcccccccc
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+..++.|++++++.+.
T Consensus 89 -------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 89 -------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred -------cCccccEEccHHHHhhC
Confidence 23466789999988763
No 90
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=2.8e-09 Score=94.12 Aligned_cols=126 Identities=22% Similarity=0.241 Sum_probs=87.8
Q ss_pred ccccCCCCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE
Q 025996 44 SVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT 123 (245)
Q Consensus 44 ~~~~~~~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg 123 (245)
+..|....-+++|+..+++. ++ +||+++-.+..-...|.|-+|+|+++++| ++.++|+||++||||++....+++.
T Consensus 106 ~~lP~~Ash~vgvg~~V~n~-~~--eVlVv~e~d~~~~~~~~wK~ptG~v~~~e-~i~~gavrEvkeetgid~ef~eVla 181 (295)
T KOG0648|consen 106 STLPANASHRVGVGAFVLNK-KK--EVLVVQEKDGAVKIRGGWKLPTGRVEEGE-DIWHGAVREVKEETGIDTEFVEVLA 181 (295)
T ss_pred ccCCCchhhheeeeeeEecC-Cc--eeEEEEecccceeecccccccceEecccc-cchhhhhhhhHHHhCcchhhhhHHH
Confidence 33444455678888877774 34 78887654544467899999999999999 9999999999999999877776654
Q ss_pred EeCCcccCCc--eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996 124 ILDPIFTKNG--IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 124 ~l~~~~~~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
.-........ ..-..+++.+.. ..+.+..+..|+..+.|+|+++..+...
T Consensus 182 ~r~~H~~~~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~qp~ 233 (295)
T KOG0648|consen 182 FRRAHNATFGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVSQPL 233 (295)
T ss_pred HHhhhcchhhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhcccc
Confidence 3322221111 111223344433 3566677888999999999998887665
No 91
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.7e-07 Score=80.52 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=94.4
Q ss_pred ccccCCCCCceEEEEEEEE--cCCCcEEEEEEEeCCCCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCCc--
Q 025996 44 SVAVSSTKKRAAVLVCLFE--GNDGDLRVFLTKRSSNLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPSL-- 118 (245)
Q Consensus 44 ~~~~~~~~r~aaV~v~l~~--~~~g~~~vLL~rR~~~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~-- 118 (245)
.+.++.+.+..+|.|--+. ...+.+++++.||+..+..|||.| ...||.+-.|. +..+||+.|..||..|+...
T Consensus 122 a~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~-gI~eT~iKE~~EEAnl~~~~~~ 200 (306)
T KOG4313|consen 122 AATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF-GIKETAIKEAAEEANLPSDLVK 200 (306)
T ss_pred cccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc-hHHHHHHHHHHHhcCCchhhHh
Confidence 4556777788888774332 233568999999999999999999 56799999999 99999999999999998732
Q ss_pred -ceEEEEeCCcccCC--c-eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 119 -VNVVTILDPIFTKN--G-IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 119 -~~~lg~l~~~~~~~--~-~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
+...|+++.++..+ + +.-+.||+.+.-..++.++.+.+||+..-.+++.+..+.
T Consensus 201 Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~ 258 (306)
T KOG4313|consen 201 NLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVER 258 (306)
T ss_pred cceecceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHH
Confidence 23345555543221 1 123346666665556777889999999999999877653
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.52 E-value=7.2e-07 Score=69.39 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=46.1
Q ss_pred EEEEcCCCcEEEEEEEeCCCC--CCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC
Q 025996 59 CLFEGNDGDLRVFLTKRSSNL--SSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS 117 (245)
Q Consensus 59 ~l~~~~~g~~~vLL~rR~~~~--~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~ 117 (245)
+|++..+|.+.|||++-.-.. +..-|-|++|.|-...|| ++..||.||.-||+||.++
T Consensus 9 LlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gE-dp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 9 LLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGE-DPWLAARREFSEEIGICVD 68 (161)
T ss_pred EEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCc-CHHHHHHHHhhhhhceeec
Confidence 345556788889998754321 223478999999999999 9999999999999999774
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.39 E-value=3.8e-07 Score=69.98 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=63.0
Q ss_pred EEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEE
Q 025996 60 LFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPV 139 (245)
Q Consensus 60 l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~ 139 (245)
+++ .+| ++||+||... +.++|.|+||.--.+..+ + .+.+.+.+.+..|+.+...+.++.+.+.++.....+++|
T Consensus 4 i~~-~~~--~~Ll~kRp~~-gll~GLwefP~~e~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~ 77 (114)
T PF14815_consen 4 IIR-SQG--RVLLEKRPEK-GLLAGLWEFPLIESDEED-D-EEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVY 77 (114)
T ss_dssp EEE-TTS--EEEEEE--SS-STTTT-EE--EEE-SSS--C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEE
T ss_pred EEE-eCC--EEEEEECCCC-ChhhcCcccCEeCccCCC-C-HHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEE
Confidence 444 456 8999999986 699999999997777444 3 444555555677777666667788888888888888888
Q ss_pred EEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 140 IGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 140 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+.+..... .+-....|++++++.+-
T Consensus 78 ~~~~~~~~~-------~~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 78 EVEVSADPP-------AEPEEGQWVSLEELDQY 103 (114)
T ss_dssp EEEEE-SS-----------TTEEEEEGGGGGGS
T ss_pred EEEecCCCC-------CCCCCcEEEEHHHHhhC
Confidence 888775311 14577889999998763
No 94
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=5.5e-06 Score=69.23 Aligned_cols=118 Identities=24% Similarity=0.204 Sum_probs=77.5
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-----C----ceecCCCCCCHHHHHHHHHHHHHCCCCCcc-
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-----P----GGKREENDADDAGTALREAKEEIGLDPSLV- 119 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-----P----GG~ve~gE~s~~~aA~REl~EEtGl~~~~~- 119 (245)
+.-+.|..|.+++ .++ ++||++|+..+-.+|+.|.- | +.-.+.+......||.|-++-|+||+...+
T Consensus 49 glLHRaFSVFlFn-s~~--~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~ 125 (225)
T KOG0142|consen 49 GLLHRAFSVFLFN-SKN--ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVP 125 (225)
T ss_pred hhhhheeeEEEec-Ccc--hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccC
Confidence 3445667777887 455 79999999998789998842 3 222222212468899999999999976654
Q ss_pred ----eEEEEeCCcc---cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996 120 ----NVVTILDPIF---TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 120 ----~~lg~l~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
.+++.+-+-. ...|.+-.-|+-++.. +..+.+||+||.++.||+.++|...
T Consensus 126 pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~--~~~~nPnpnEv~e~ryvs~eelkel 183 (225)
T KOG0142|consen 126 PEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVK--DVTLNPNPNEVSEIRYVSREELKEL 183 (225)
T ss_pred HHHcccceeeeeecCCCCCcccceeeEEEEEec--cCCCCCChhhhhHhheecHHHHHHH
Confidence 3444432221 2233333334433333 3456789999999999999988654
No 95
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.65 E-value=9.5e-05 Score=62.81 Aligned_cols=40 Identities=38% Similarity=0.482 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHC
Q 025996 68 LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIG 113 (245)
Q Consensus 68 ~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtG 113 (245)
++++.+||+.. |.|++|||.+|+|| -+-++..||+.||.=
T Consensus 139 le~vavkr~d~-----~~WAiPGGmvdpGE-~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 139 LEFVAVKRPDN-----GEWAIPGGMVDPGE-KVSATLKREFGEEAM 178 (275)
T ss_pred eEEEEEecCCC-----CcccCCCCcCCchh-hhhHHHHHHHHHHHH
Confidence 78888998876 89999999999999 899999999999953
No 96
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.68 E-value=0.009 Score=54.92 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=52.8
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
++||+||... +.+.|.|+||+. +..+ .+++..|+.|+.......++.+.+.++.....++++.+.......
T Consensus 243 ~~~l~~r~~~-gl~~gl~~fP~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~~~~~~~~ 313 (350)
T PRK10880 243 EVWLEQRPPS-GLWGGLFCFPQF--ADEE------ELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTG 313 (350)
T ss_pred EEEEEECCcc-ChhhccccCCCC--cchh------hHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEEEcccccc
Confidence 7999999876 689999999963 2211 245566888876433333455555556555556666544432100
Q ss_pred CCCCCCcccceeEEEEcccccccc
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
..+ ..+..|++++++.+-
T Consensus 314 ---~~~---~~~~~w~~~~~~~~~ 331 (350)
T PRK10880 314 ---CMD---EGNGLWYNLAQPPSV 331 (350)
T ss_pred ---ccC---CcCCeEechHHhccc
Confidence 011 123359998887763
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.36 E-value=0.054 Score=44.22 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=60.8
Q ss_pred EEEEEEeCCCCC--CCCCCccC-CceecCCCCC--CHHH----HHHHHHHHHHCCC---CCcceEEEEeCCcccCCceEE
Q 025996 69 RVFLTKRSSNLS--SHSGEVAL-PGGKREENDA--DDAG----TALREAKEEIGLD---PSLVNVVTILDPIFTKNGIIV 136 (245)
Q Consensus 69 ~vLL~rR~~~~~--~~~G~w~f-PGG~ve~gE~--s~~~----aA~REl~EEtGl~---~~~~~~lg~l~~~~~~~~~~v 136 (245)
+||+..|-..-+ .--++.++ -|||+..++. |..+ -+.||+.||+++. ...+++||-...-...-+...
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH 152 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH 152 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence 899999976431 22356777 4999988762 2222 2679999999997 556778887765433222222
Q ss_pred EEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996 137 VPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171 (245)
Q Consensus 137 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~ 171 (245)
.-.++.+... ......-..+.-++.|+-+++|.+
T Consensus 153 iG~lf~~~~k-~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 153 IGALFLGRGK-FNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred EEEEEEeecc-ccceeeeecceeeeeeeeHHHHHH
Confidence 2223322211 111122334567788999988865
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=95.73 E-value=0.036 Score=46.45 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=43.4
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP 116 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~ 116 (245)
+.|+..-+|+++. ..+-++|||.+.... .+-+|||++.+|| +..++..|.+.+-+|...
T Consensus 41 GmRrsVe~Vllvh-~h~~PHvLLLq~~~~------~fkLPGg~l~~gE-~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 41 GMRRSVEGVLLVH-EHGHPHVLLLQIGNT------FFKLPGGRLRPGE-DEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp SSEEEEEEEEEEE-ETTEEEEEEEEETTT------EEE-SEEE--TT---HHHHHHHHHHHHHB-SS
T ss_pred CCceEEEEEEEEe-cCCCcEEEEEeccCc------cccCCccEeCCCC-ChhHHHHHHHHHHcCCCc
Confidence 6777777777776 467789999996543 6899999999999 889999999999999764
No 99
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=95.64 E-value=0.0046 Score=55.64 Aligned_cols=97 Identities=24% Similarity=0.284 Sum_probs=56.5
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc-cCCceEEEEEEE-EeCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF-TKNGIIVVPVIG-ILPDR 146 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~-~~~~~~v~~~v~-~~~~~ 146 (245)
++||++-. .+.-|.||-|++..+| +-.+||+||+.||||-+....- -....+. ...+..+..|+. -+...
T Consensus 96 r~llv~g~-----qa~sw~fprgK~~kde-sd~~caiReV~eetgfD~skql--~~~e~Ie~nI~dq~~~~fIi~gvs~d 167 (348)
T KOG2937|consen 96 RCLLVKGW-----QASSWSFPRGKISKDE-SDSDCAIREVTEETGFDYSKQL--QDNEGIETNIRDQLVRLFIINGVSED 167 (348)
T ss_pred hhheeece-----ecccccccCccccccc-hhhhcchhcccchhhcCHHHHh--ccccCcccchhhceeeeeeeccceee
Confidence 56666522 2345999999999999 7899999999999998765321 1111111 111112222221 11111
Q ss_pred CCCCCCCCcccceeEEEEccccccccCC
Q 025996 147 NSFIPAPNTAEVDAIFDAPLEMFLKDEN 174 (245)
Q Consensus 147 ~~~~~~~~~~Ev~~v~wvpl~el~~~~~ 174 (245)
..+.+.. --|++.+.|.-++++....+
T Consensus 168 ~~f~~~v-~~eis~ihW~~l~~l~~t~~ 194 (348)
T KOG2937|consen 168 TNFNPRV-RKEISKIHWHYLDHLVPTDK 194 (348)
T ss_pred eecchhh-hccccceeeeehhhhccccc
Confidence 1122222 25889999999999866544
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.43 E-value=0.17 Score=45.30 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=55.4
Q ss_pred ccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCcccCCceEEEEEEEEeCCCCC---CCCCCCccccee
Q 025996 86 VALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIFTKNGIIVVPVIGILPDRNS---FIPAPNTAEVDA 160 (245)
Q Consensus 86 w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~---~~~~~~~~Ev~~ 160 (245)
+++-.|.++..= |..+-|.||..||.|+++. .++....+..-...++-.-+-|.+.+.+... ....-+.+|..+
T Consensus 286 lELcag~Vd~p~-s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IE 364 (405)
T KOG4432|consen 286 LELCAGRVDDPF-SDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIE 364 (405)
T ss_pred eeeecccCCCCc-ccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceee
Confidence 344577887764 6788999999999998765 3444444444444555555556666654221 112345578889
Q ss_pred EEEEccccccc
Q 025996 161 IFDAPLEMFLK 171 (245)
Q Consensus 161 v~wvpl~el~~ 171 (245)
+.-+|++++..
T Consensus 365 vv~lsle~a~~ 375 (405)
T KOG4432|consen 365 VVRLSLEDAPS 375 (405)
T ss_pred EEEechhhhhH
Confidence 99999998755
No 101
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=90.75 E-value=0.69 Score=38.13 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=42.7
Q ss_pred CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCC
Q 025996 50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL 114 (245)
Q Consensus 50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl 114 (245)
+.|+..-.|+|+. +..-++|||.+=... ..-+|||.+++|| +-.+...|-+-|-+|=
T Consensus 67 gmRrsvegvlivh-eH~lPHvLLLQig~t------f~KLPGG~L~pGE-~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 67 GMRRSVEGVLIVH-EHNLPHVLLLQIGNT------FFKLPGGRLRPGE-DEADGLKRLLTESLGR 123 (221)
T ss_pred hhhheeeeeEEEe-ecCCCeEEEEeeCCE------EEecCCCccCCCc-chhHHHHHHHHHHhcc
Confidence 5677666666665 344457777764332 5789999999999 8888999999999993
No 102
>PRK13910 DNA glycosylase MutY; Provisional
Probab=90.48 E-value=1.3 Score=39.85 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=41.8
Q ss_pred EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS 148 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~ 148 (245)
++||+||. .+.+.|+|+||+. + + . .+... ..++.+.+.++.....++++.+.+..
T Consensus 198 ~~ll~kr~--~~l~~gl~~fP~~--~--~-~------------~~~~~---~~~~~~~H~fTH~~~~~~~~~~~~~~--- 252 (289)
T PRK13910 198 QIALEKIE--QKLYLGMHHFPNL--K--E-N------------LEYKL---PFLGAIKHSHTKFKLNLNLYLAAIKD--- 252 (289)
T ss_pred EEEEEECC--CchhcccccCCCC--h--h-h------------hcccc---cccCceEEEEEeEEEEEEEEEEEecc---
Confidence 79999995 3589999999963 1 1 1 11111 12445555556556666666554421
Q ss_pred CCCCCCcccceeEEEEcccccccc
Q 025996 149 FIPAPNTAEVDAIFDAPLEMFLKD 172 (245)
Q Consensus 149 ~~~~~~~~Ev~~v~wvpl~el~~~ 172 (245)
. -....|++++++.+-
T Consensus 253 -----~---~~~~~w~~~~~~~~~ 268 (289)
T PRK13910 253 -----L---KNPIRFYSLKDLETL 268 (289)
T ss_pred -----C---CccceEecHHHhhhc
Confidence 0 123379998887653
No 103
>PF14443 DBC1: DBC1
Probab=87.60 E-value=0.81 Score=35.90 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCCCCCCCCccCC--ceecCCCCCCHHHHHHHHHHHHHCCCCCc
Q 025996 68 LRVFLTKRSSNLSSHSGEVALP--GGKREENDADDAGTALREAKEEIGLDPSL 118 (245)
Q Consensus 68 ~~vLL~rR~~~~~~~~G~w~fP--GG~ve~gE~s~~~aA~REl~EEtGl~~~~ 118 (245)
+++|+.+|......-.|.|+-- ||--+.+...+..||+|=++|-|||+...
T Consensus 8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 4555555555433445778544 66776666678999999999999999764
No 104
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=87.44 E-value=2 Score=38.31 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.6
Q ss_pred EEEEEEeCCCCCCCCCCccCCc
Q 025996 69 RVFLTKRSSNLSSHSGEVALPG 90 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPG 90 (245)
++|++||... +.+.|+|+||+
T Consensus 240 ~~~~~~r~~~-~~~~gl~~~p~ 260 (275)
T TIGR01084 240 EVLLEQRPEK-GLWGGLYCFPQ 260 (275)
T ss_pred eEEEEeCCCC-chhhccccCCC
Confidence 7999999876 58899999997
No 105
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=85.41 E-value=0.99 Score=40.50 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=42.3
Q ss_pred ccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--cCCceEEEEEEEEeCC
Q 025996 86 VALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF--TKNGIIVVPVIGILPD 145 (245)
Q Consensus 86 w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~--~~~~~~v~~~v~~~~~ 145 (245)
+++-||.+|..- |+.+-|..|+.||.|+.+....++..+.... ..++...+.|.+.+.+
T Consensus 81 ielc~g~idke~-s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e 141 (405)
T KOG4432|consen 81 IELCAGLIDKEL-SPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE 141 (405)
T ss_pred eeeecccccccc-CHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence 456689999876 9999999999999999877655554443332 2345556667776664
No 106
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=84.75 E-value=1.8 Score=39.65 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=48.0
Q ss_pred CCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEe
Q 025996 64 NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGIL 143 (245)
Q Consensus 64 ~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~ 143 (245)
.+| .+++.||... +.+.|+|+||....+.+ ..+..-+.++.. +.++.+.+.++.....+. +.+..
T Consensus 245 ~~~--~~~l~kr~~~-gl~~gl~~fP~~e~~~~--------~~~~~~~~~~~~---~~~~~~~H~fth~~l~i~-~~a~~ 309 (342)
T COG1194 245 RDG--EVLLEKRPEK-GLLGGLWCFPQFEDEAD--------LLDWLAADGLAA---EPLGAFRHTFTHFRLTIE-LRASA 309 (342)
T ss_pred cCc--chhhhhCccc-Cceecccccccccccch--------hhhHhhhccccc---ccccceeeeeeEEEEEEE-EEeec
Confidence 355 7899999876 58999999998655431 122223334433 445666665555555555 22221
Q ss_pred CCCCCCCCCCCcccceeEEEEccccccc
Q 025996 144 PDRNSFIPAPNTAEVDAIFDAPLEMFLK 171 (245)
Q Consensus 144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~ 171 (245)
.. . .. +..|++++++..
T Consensus 310 ~~--------~-~~--~~~w~~~~~~~~ 326 (342)
T COG1194 310 SL--------V-LS--DGRWYNLSDLES 326 (342)
T ss_pred cc--------C-CC--Cceecccccccc
Confidence 10 1 12 678999888764
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=62.99 E-value=7.4 Score=24.23 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=11.7
Q ss_pred CceecCCCCCCHHHHHHHHHHHHH
Q 025996 89 PGGKREENDADDAGTALREAKEEI 112 (245)
Q Consensus 89 PGG~ve~gE~s~~~aA~REl~EEt 112 (245)
-||...+|- -+..+|+||+-||+
T Consensus 14 lggLasPgP-vp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGP-VPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred hcccCCCCC-CCchHHHHHHHHHH
Confidence 467777777 67888999999996
No 108
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=43.43 E-value=20 Score=38.54 Aligned_cols=31 Identities=35% Similarity=0.543 Sum_probs=24.4
Q ss_pred ccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE
Q 025996 86 VALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT 123 (245)
Q Consensus 86 w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg 123 (245)
+.||.|. ..+..+||+.+|+|+.++.+.++-
T Consensus 270 vTfP~G~-------~Q~qLi~e~Yse~Gl~P~sv~YvE 300 (2376)
T KOG1202|consen 270 VTFPSGD-------MQEQLIRETYSEAGLNPESVVYVE 300 (2376)
T ss_pred ccCCCcH-------HHHHHHHHHHHhcCCCcccEEEEE
Confidence 5666553 467889999999999998887653
No 109
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=35.74 E-value=64 Score=28.43 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=34.1
Q ss_pred EEEEEEeCCCCCCCCCCccCCceec-CCCCCCHHHHHHHHHHHHHCCCC
Q 025996 69 RVFLTKRSSNLSSHSGEVALPGGKR-EENDADDAGTALREAKEEIGLDP 116 (245)
Q Consensus 69 ~vLL~rR~~~~~~~~G~w~fPGG~v-e~gE~s~~~aA~REl~EEtGl~~ 116 (245)
-+||++|.-. ..+.|-||-+.. +.++ ++-.+|.|++++-.|=..
T Consensus 140 LyLLV~~k~g---~~s~w~fP~~~~s~~~~-~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 140 LYLLVKRKFG---KSSVWIFPNRQFSSSEK-TLRGHAERDLKVLSGENK 184 (263)
T ss_pred EEEEEeeccC---ccceeeCCCcccCCccc-hHHHHHHHHHHHHhcchh
Confidence 4667765533 235899999999 7777 999999999999888543
No 110
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=22.54 E-value=1.3e+02 Score=26.76 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHH-HHHHCCCCCcceEEEEeCC
Q 025996 65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREA-KEEIGLDPSLVNVVTILDP 127 (245)
Q Consensus 65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl-~EEtGl~~~~~~~lg~l~~ 127 (245)
+|+++||-++... .+|.|-.|+.- .-.++-+|.- .+.|+.+...++.|.++-.
T Consensus 34 ~~~p~VLtV~q~~---------aLP~GPfep~h-rslq~glr~wV~~qT~~plGYiEQLYTF~D 87 (322)
T COG4111 34 DGGPRVLTVRQGA---------ALPSGPFEPAH-RSLQAGLRAWVEKQTSQPLGYIEQLYTFAD 87 (322)
T ss_pred CCCceEEEecccc---------cCCCCCCchHH-HHHHHHHHHHHHHHhcCccchHHhhhhhcc
Confidence 5667777776333 38999999986 4466667764 6669998888877766543
No 111
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.03 E-value=70 Score=21.69 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=15.6
Q ss_pred CccCCceecCCCCCCHHHHHHHHHHH
Q 025996 85 EVALPGGKREENDADDAGTALREAKE 110 (245)
Q Consensus 85 ~w~fPGG~ve~gE~s~~~aA~REl~E 110 (245)
-|-+|||.+-..- -.|.|.++|
T Consensus 23 GWl~Pgg~vi~NP----lkAqR~AE~ 44 (60)
T PF07026_consen 23 GWLMPGGKVITNP----LKAQRLAEE 44 (60)
T ss_pred eeecCCCeeEcCH----HHHHHHHHH
Confidence 3999999998643 346776644
Done!