BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025998
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 32 SLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNGRAKSSRRKSPFNNDRPKASCSSDHT 91
+L + R+FC +++ K VP G + +SS+ S D P +
Sbjct: 494 TLDEARWFCIELDKFFQK------VPSGPETIE----RSSKDSSVTVPDMPSFQSLKEQA 543
Query: 92 DDAVSTPNGGSDIDLAVVFANSSTPDNVV------QNDDFNVHNVMGNGDLNILGE 141
D+AV NGG D+DL+ + PD ++ + +FN++ + +GD + G
Sbjct: 544 DNAV---NGGHDLDLSAYERSCGIPDRMLLPKSKPEGMEFNLYVAVTDGDKDTEGH 596
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 123 DDFNVHNVMGNGDLNILG----EFPQVFGQLQEEEDRRVQDFLEDDMVNA---HGLQALL 175
D++ V+ D+ IL ++ F + +E + R++ + M+++ HGL
Sbjct: 306 DEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWF 365
Query: 176 GDEIVDHQVALWSDQAETETLPNFTWQRAMFQLQDFDSFPADDQLKASANLISDNWTSFD 235
+ + +W A TE L ++ R +FQ F A D L + LI++ S+D
Sbjct: 366 DVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK--AGDTLSGTCLLIANKRQSYD 423
Query: 236 L 236
+
Sbjct: 424 I 424
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 177 DEIVDHQVALWSDQAETETLPNFTWQRAMFQLQDFDSFPA 216
D+++ + ALWS+Q++T TL W RA + + PA
Sbjct: 495 DQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPA 534
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 177 DEIVDHQVALWSDQAETETLPNFTWQRAMFQLQDFDSFPA 216
D+++ + ALWS+Q++T TL W RA + + PA
Sbjct: 492 DQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPA 531
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 177 DEIVDHQVALWSDQAETETLPNFTWQRAMFQLQDFDSFPA 216
D+++ + ALWS+Q++T TL W RA + + PA
Sbjct: 492 DQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPA 531
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 146 FGQLQEEEDRRVQDFLEDDMVNA---HGLQALLGDEIVDHQVALWSDQAETETLPNFTWQ 202
F + +E + R++ + M+++ HGL + + +W A TE L ++
Sbjct: 216 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 275
Query: 203 RAMFQLQDFDSFPADDQLKASANLISDNWTSFDL 236
R +FQ F A D L + LI++ S+D+
Sbjct: 276 RCLFQSPLFAK--AGDTLSGTCLLIANKRQSYDI 307
>pdb|2IJZ|A Chain A, Crystal Structure Of Aminopeptidase
pdb|2IJZ|B Chain B, Crystal Structure Of Aminopeptidase
pdb|2IJZ|C Chain C, Crystal Structure Of Aminopeptidase
pdb|2IJZ|D Chain D, Crystal Structure Of Aminopeptidase
pdb|2IJZ|E Chain E, Crystal Structure Of Aminopeptidase
pdb|2IJZ|F Chain F, Crystal Structure Of Aminopeptidase
pdb|2IJZ|G Chain G, Crystal Structure Of Aminopeptidase
pdb|2IJZ|H Chain H, Crystal Structure Of Aminopeptidase
pdb|2IJZ|I Chain I, Crystal Structure Of Aminopeptidase
pdb|2IJZ|J Chain J, Crystal Structure Of Aminopeptidase
pdb|2IJZ|K Chain K, Crystal Structure Of Aminopeptidase
pdb|2IJZ|L Chain L, Crystal Structure Of Aminopeptidase
Length = 428
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 119 VVQNDDFNVHNVMGNG-DLNILGEFPQVFGQLQEEEDRRVQDFLEDDMVNAHGLQALLGD 177
V+ N + +++ G +N E P + QL E + L++ ++ HG+ A D
Sbjct: 148 VIPNLNIHLNRAANEGWPINAQNELPPIIAQLAPGEAADFRLLLDEQLLREHGITA---D 204
Query: 178 EIVDHQVALWSDQA 191
++D++++ + Q+
Sbjct: 205 VVLDYELSFYDTQS 218
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 146 FGQLQEEEDRRVQDFLEDDMVNA---HGLQALLGDEIVDHQVALWSDQAETETLPNFTWQ 202
F + +E + R++ + M+++ HGL + + +W A TE L ++
Sbjct: 225 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 284
Query: 203 RAMFQLQDFDSFPADDQLKASANLISDNWTSFDL 236
R +FQ F A D L + LI++ S+D+
Sbjct: 285 RCLFQSPLFAK--AGDTLSGTCLLIANKRQSYDI 316
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 146 FGQLQEEEDRRVQDFLEDDMVNA---HGLQALLGDEIVDHQVALWSDQAETETLPNFTWQ 202
F + +E + R++ + M+++ HGL + + +W A TE L ++
Sbjct: 220 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 279
Query: 203 RAMFQLQDFDSFPADDQLKASANLISDNWTSFDL 236
R +FQ F A D L + LI++ S+D+
Sbjct: 280 RCLFQSPLFAK--AGDTLSGTCLLIANKRQSYDI 311
>pdb|4A7K|A Chain A, Bifunctional Aldos-2-Ulose Dehydratase
pdb|4A7Y|A Chain A, Active Site Metal Depleted Aldos-2-Ulose Dehydratase
pdb|4A7Z|A Chain A, Complex Of Bifunctional Aldos-2-ulose Dehydratase With The
Reaction Intermediate Ascopyrone M
Length = 900
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 205 MFQLQDFDSFPADDQLKASAN---LISDNWTSFDLPGFELYSRP 245
+ ++ D +P L + N D W +F+ PGFE +S P
Sbjct: 697 LLRMNDTIDYPWHAWLAGAGNPSPQAFDVWVAFEFPGFETFSTP 740
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 146 FGQLQEEEDRRVQDFLEDDMVNA---HGLQALLGDEIVDHQVALWSDQAETETLPNFTWQ 202
F + +E + R++ + M+++ HGL + + +W A TE L ++
Sbjct: 221 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 280
Query: 203 RAMFQLQDFDSFPADDQLKASANLISDNWTSFDL 236
R +FQ F A D L + LI++ S+D+
Sbjct: 281 RCLFQSPLFAK--AGDTLSGTCLLIANKRQSYDI 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,325,890
Number of Sequences: 62578
Number of extensions: 350310
Number of successful extensions: 647
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 11
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)