Query 025999
Match_columns 245
No_of_seqs 250 out of 1393
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 7E-41 1.5E-45 294.8 7.6 233 12-245 114-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 100.0 1.2E-28 2.7E-33 200.6 9.9 128 8-135 20-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.4 2.6E-14 5.6E-19 93.1 -1.9 50 196-245 8-62 (62)
4 KOG4265 Predicted E3 ubiquitin 99.3 1.2E-12 2.5E-17 116.3 3.2 53 193-245 288-344 (349)
5 PF13920 zf-C3HC4_3: Zinc fing 99.3 1.3E-12 2.8E-17 85.8 1.4 44 196-239 3-50 (50)
6 KOG4275 Predicted E3 ubiquitin 99.2 1.4E-12 3E-17 112.6 0.9 51 195-245 300-350 (350)
7 KOG0317 Predicted E3 ubiquitin 99.1 7.7E-11 1.7E-15 102.0 3.9 45 195-240 239-287 (293)
8 KOG0823 Predicted E3 ubiquitin 99.0 1.5E-10 3.2E-15 97.5 4.1 49 194-243 46-103 (230)
9 PLN03208 E3 ubiquitin-protein 98.9 8.2E-10 1.8E-14 91.4 3.5 49 194-243 17-87 (193)
10 KOG4628 Predicted E3 ubiquitin 98.7 9.5E-08 2.1E-12 85.9 8.7 43 196-239 230-280 (348)
11 PHA02929 N1R/p28-like protein; 98.6 2.6E-08 5.5E-13 85.7 2.8 47 195-242 174-232 (238)
12 PF13923 zf-C3HC4_2: Zinc fing 98.6 1.6E-08 3.5E-13 62.8 0.9 34 198-232 1-39 (39)
13 PF13639 zf-RING_2: Ring finge 98.5 2.5E-08 5.4E-13 63.5 0.6 36 197-233 2-44 (44)
14 KOG1100 Predicted E3 ubiquitin 98.5 5.2E-08 1.1E-12 82.4 2.3 47 197-243 160-206 (207)
15 KOG2164 Predicted E3 ubiquitin 98.5 4E-08 8.8E-13 91.2 1.6 48 195-243 186-244 (513)
16 KOG0320 Predicted E3 ubiquitin 98.5 5E-08 1.1E-12 79.2 1.8 47 196-243 132-186 (187)
17 PF14634 zf-RING_5: zinc-RING 98.4 1.2E-07 2.5E-12 60.5 1.9 36 198-234 2-44 (44)
18 PF15227 zf-C3HC4_4: zinc fing 98.4 1.3E-07 2.8E-12 59.7 1.4 34 198-232 1-42 (42)
19 PHA02926 zinc finger-like prot 98.3 1.1E-07 2.4E-12 79.9 0.7 46 195-241 170-234 (242)
20 KOG0978 E3 ubiquitin ligase in 98.3 1.3E-07 2.8E-12 91.5 -0.6 47 196-243 644-697 (698)
21 COG5574 PEX10 RING-finger-cont 98.2 4E-07 8.7E-12 78.3 1.5 43 195-238 215-263 (271)
22 PF00097 zf-C3HC4: Zinc finger 98.2 4.7E-07 1E-11 56.5 1.2 34 198-232 1-41 (41)
23 cd00162 RING RING-finger (Real 98.1 1.1E-06 2.3E-11 55.0 1.8 39 197-236 1-45 (45)
24 smart00504 Ubox Modified RING 98.1 1.6E-06 3.6E-11 59.0 2.3 41 197-238 3-47 (63)
25 smart00184 RING Ring finger. E 98.1 1.4E-06 3.1E-11 52.5 1.6 34 198-232 1-39 (39)
26 COG5243 HRD1 HRD ubiquitin lig 98.1 8.5E-06 1.8E-10 73.2 7.0 42 194-236 286-344 (491)
27 TIGR00599 rad18 DNA repair pro 98.1 1.2E-06 2.5E-11 80.7 1.6 45 193-238 24-72 (397)
28 PF13445 zf-RING_UBOX: RING-ty 97.9 3E-06 6.5E-11 53.7 0.7 27 198-226 1-31 (43)
29 KOG1785 Tyrosine kinase negati 97.9 2.8E-06 6E-11 76.9 0.7 45 196-241 370-420 (563)
30 COG5432 RAD18 RING-finger-cont 97.8 7.4E-06 1.6E-10 71.4 1.2 42 194-236 24-69 (391)
31 COG5540 RING-finger-containing 97.8 1.1E-05 2.4E-10 70.7 1.8 43 195-238 323-373 (374)
32 PF12678 zf-rbx1: RING-H2 zinc 97.7 1.6E-05 3.5E-10 56.2 1.6 36 197-233 21-73 (73)
33 KOG0287 Postreplication repair 97.7 9.7E-06 2.1E-10 72.0 0.4 43 195-238 23-69 (442)
34 KOG4692 Predicted E3 ubiquitin 97.7 1.3E-05 2.8E-10 71.6 0.9 44 194-238 421-468 (489)
35 COG5236 Uncharacterized conser 97.5 0.00012 2.5E-09 65.5 4.4 47 193-240 59-111 (493)
36 KOG0802 E3 ubiquitin ligase [P 97.4 0.0002 4.4E-09 69.0 5.7 42 194-236 290-340 (543)
37 KOG2177 Predicted E3 ubiquitin 97.4 4E-05 8.7E-10 66.4 0.4 40 194-234 12-55 (386)
38 PF14447 Prok-RING_4: Prokaryo 97.4 7.9E-05 1.7E-09 49.2 1.7 43 195-238 7-51 (55)
39 PF04564 U-box: U-box domain; 97.3 0.0001 2.2E-09 52.0 1.6 43 195-238 4-51 (73)
40 COG5152 Uncharacterized conser 97.3 6.1E-05 1.3E-09 62.4 0.4 46 192-238 193-242 (259)
41 PF14835 zf-RING_6: zf-RING of 97.3 9.4E-05 2E-09 50.5 1.2 40 196-236 8-50 (65)
42 KOG1813 Predicted E3 ubiquitin 97.1 0.00023 5E-09 62.4 1.5 48 192-240 238-289 (313)
43 KOG0311 Predicted E3 ubiquitin 96.7 0.00016 3.5E-09 64.8 -2.7 44 195-239 43-92 (381)
44 KOG4159 Predicted E3 ubiquitin 96.7 0.00071 1.5E-08 62.5 1.3 45 193-238 82-130 (398)
45 KOG1039 Predicted E3 ubiquitin 96.6 0.00083 1.8E-08 60.9 1.4 46 195-241 161-225 (344)
46 PF12861 zf-Apc11: Anaphase-pr 96.6 0.0013 2.9E-08 47.5 2.0 28 209-237 48-82 (85)
47 KOG0828 Predicted E3 ubiquitin 96.6 0.00068 1.5E-08 63.2 0.6 43 195-238 571-635 (636)
48 KOG2879 Predicted E3 ubiquitin 96.5 0.002 4.3E-08 56.1 3.2 47 192-239 236-289 (298)
49 KOG1734 Predicted RING-contain 96.3 0.033 7.2E-07 48.5 8.9 46 192-238 221-282 (328)
50 KOG0826 Predicted E3 ubiquitin 96.2 0.0073 1.6E-07 53.8 5.0 50 193-243 298-354 (357)
51 KOG0804 Cytoplasmic Zn-finger 96.0 0.0045 9.8E-08 57.3 2.7 41 194-235 174-220 (493)
52 KOG3002 Zn finger protein [Gen 95.5 0.0059 1.3E-07 54.5 1.4 44 194-239 47-93 (299)
53 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.017 3.6E-07 50.7 2.9 46 192-238 110-162 (260)
54 KOG0825 PHD Zn-finger protein 94.9 0.0056 1.2E-07 60.1 -0.8 45 196-241 124-175 (1134)
55 KOG0297 TNF receptor-associate 94.7 0.014 3.1E-07 54.1 1.3 46 194-240 20-70 (391)
56 KOG1001 Helicase-like transcri 94.5 0.013 2.9E-07 57.8 0.8 41 196-238 455-501 (674)
57 KOG2932 E3 ubiquitin ligase in 94.3 0.019 4.2E-07 50.9 1.2 45 195-240 90-137 (389)
58 KOG1814 Predicted E3 ubiquitin 94.0 0.022 4.8E-07 52.3 1.0 31 195-226 184-217 (445)
59 KOG1002 Nucleotide excision re 93.8 0.015 3.3E-07 55.0 -0.4 41 195-236 536-585 (791)
60 PF05290 Baculo_IE-1: Baculovi 93.5 0.028 6.1E-07 43.9 0.7 45 196-241 81-136 (140)
61 smart00744 RINGv The RING-vari 93.2 0.047 1E-06 35.4 1.3 36 197-233 1-49 (49)
62 PF10367 Vps39_2: Vacuolar sor 93.1 0.23 5E-06 36.8 5.2 29 195-224 78-108 (109)
63 KOG3039 Uncharacterized conser 91.7 0.11 2.3E-06 44.9 2.0 43 195-238 221-271 (303)
64 KOG4445 Uncharacterized conser 90.4 0.069 1.5E-06 47.3 -0.4 40 197-237 117-186 (368)
65 KOG1428 Inhibitor of type V ad 90.2 0.14 3E-06 54.0 1.4 46 193-239 3484-3546(3738)
66 KOG2660 Locus-specific chromos 89.0 0.086 1.9E-06 47.2 -0.9 46 195-241 15-65 (331)
67 PF11789 zf-Nse: Zinc-finger o 89.0 0.19 4.2E-06 33.6 1.0 38 193-231 9-53 (57)
68 COG5222 Uncharacterized conser 88.4 0.2 4.3E-06 44.4 0.9 39 195-234 274-318 (427)
69 KOG2113 Predicted RNA binding 88.0 0.41 8.8E-06 42.8 2.6 47 196-242 344-392 (394)
70 PF11793 FANCL_C: FANCL C-term 88.0 0.13 2.9E-06 35.8 -0.3 41 197-238 4-67 (70)
71 PF04710 Pellino: Pellino; In 87.1 0.18 4E-06 46.3 0.0 43 195-238 328-402 (416)
72 PF10272 Tmpp129: Putative tra 87.0 1.1 2.3E-05 41.2 4.8 41 195-236 271-350 (358)
73 COG5175 MOT2 Transcriptional r 87.0 0.25 5.5E-06 44.5 0.8 43 195-238 14-65 (480)
74 COG5219 Uncharacterized conser 85.9 0.19 4.2E-06 50.8 -0.6 41 197-238 1471-1524(1525)
75 COG5194 APC11 Component of SCF 85.2 0.51 1.1E-05 33.7 1.4 40 197-237 33-81 (88)
76 PF14570 zf-RING_4: RING/Ubox 84.8 0.38 8.2E-06 31.0 0.6 27 209-236 14-47 (48)
77 COG5220 TFB3 Cdk activating ki 84.7 0.23 4.9E-06 42.7 -0.6 39 195-234 10-61 (314)
78 KOG3842 Adaptor protein Pellin 84.2 0.62 1.3E-05 41.7 1.8 43 195-238 341-415 (429)
79 PF05883 Baculo_RING: Baculovi 83.4 0.34 7.3E-06 38.1 -0.1 30 196-226 27-65 (134)
80 KOG1493 Anaphase-promoting com 80.9 0.35 7.6E-06 34.2 -0.8 40 197-237 33-81 (84)
81 PF03854 zf-P11: P-11 zinc fin 80.4 0.82 1.8E-05 29.4 0.8 42 197-240 4-49 (50)
82 PHA03096 p28-like protein; Pro 79.2 0.64 1.4E-05 41.3 0.1 30 196-226 179-216 (284)
83 KOG3579 Predicted E3 ubiquitin 76.6 0.89 1.9E-05 40.1 0.3 31 194-225 267-301 (352)
84 KOG4362 Transcriptional regula 76.4 0.74 1.6E-05 45.3 -0.3 41 197-238 23-70 (684)
85 KOG3161 Predicted E3 ubiquitin 74.3 1 2.3E-05 43.9 0.1 38 195-234 11-54 (861)
86 KOG3799 Rab3 effector RIM1 and 72.6 5.2 0.00011 31.5 3.6 39 195-236 65-117 (169)
87 PHA02825 LAP/PHD finger-like p 72.3 2.4 5.1E-05 34.4 1.7 45 193-238 6-60 (162)
88 KOG2114 Vacuolar assembly/sort 70.8 5 0.00011 40.5 3.9 47 196-243 841-889 (933)
89 KOG1941 Acetylcholine receptor 70.5 4 8.8E-05 37.7 2.9 43 194-237 364-416 (518)
90 PF02318 FYVE_2: FYVE-type zin 70.1 11 0.00023 28.8 4.9 39 195-234 54-102 (118)
91 PF06305 DUF1049: Protein of u 67.8 34 0.00074 22.9 7.5 22 145-166 41-62 (68)
92 PF04216 FdhE: Protein involve 66.1 2.9 6.2E-05 37.1 1.1 46 195-241 172-226 (290)
93 KOG2930 SCF ubiquitin ligase, 63.2 3.1 6.6E-05 31.2 0.6 24 211-235 79-106 (114)
94 KOG2113 Predicted RNA binding 63.1 2.9 6.3E-05 37.5 0.5 46 195-240 136-186 (394)
95 COG5183 SSM4 Protein involved 62.4 4.5 9.7E-05 40.8 1.7 44 194-237 11-66 (1175)
96 KOG3113 Uncharacterized conser 62.4 4.6 9.9E-05 35.2 1.6 44 194-238 110-159 (293)
97 PF10883 DUF2681: Protein of u 60.8 62 0.0014 23.5 7.2 28 132-159 10-37 (87)
98 PF08114 PMP1_2: ATPase proteo 59.1 30 0.00064 21.5 4.3 21 132-152 17-37 (43)
99 KOG4218 Nuclear hormone recept 57.8 5.2 0.00011 36.4 1.2 25 194-222 14-38 (475)
100 KOG2817 Predicted E3 ubiquitin 56.8 5.2 0.00011 36.9 1.0 40 196-236 335-384 (394)
101 KOG0825 PHD Zn-finger protein 55.0 4.9 0.00011 40.3 0.6 43 196-239 100-156 (1134)
102 KOG3039 Uncharacterized conser 55.0 6.1 0.00013 34.3 1.1 32 194-226 42-73 (303)
103 PF14880 COX14: Cytochrome oxi 55.0 60 0.0013 21.6 7.3 33 123-155 15-47 (59)
104 PF07191 zinc-ribbons_6: zinc- 53.7 3.3 7.2E-05 28.9 -0.6 38 197-239 3-43 (70)
105 PRK03564 formate dehydrogenase 51.5 7.7 0.00017 34.9 1.2 41 194-234 186-234 (309)
106 PF01102 Glycophorin_A: Glycop 51.5 7.6 0.00017 30.1 1.1 31 115-145 58-88 (122)
107 PF10235 Cript: Microtubule-as 51.5 8.6 0.00019 28.2 1.3 37 196-238 45-81 (90)
108 TIGR01562 FdhE formate dehydro 50.8 5.7 0.00012 35.7 0.3 40 195-235 184-233 (305)
109 KOG1812 Predicted E3 ubiquitin 50.3 4.9 0.00011 37.3 -0.2 31 195-226 146-180 (384)
110 KOG3899 Uncharacterized conser 49.9 5.9 0.00013 35.2 0.2 23 213-236 325-364 (381)
111 PRK00523 hypothetical protein; 48.4 71 0.0015 22.4 5.3 28 123-150 5-32 (72)
112 PF12906 RINGv: RING-variant d 48.4 7.7 0.00017 24.7 0.5 35 198-232 1-47 (47)
113 PF02891 zf-MIZ: MIZ/SP-RING z 48.2 8.6 0.00019 24.8 0.8 38 197-235 4-50 (50)
114 KOG3842 Adaptor protein Pellin 48.2 10 0.00022 34.2 1.4 36 206-242 315-356 (429)
115 PRK13872 conjugal transfer pro 47.6 22 0.00047 30.4 3.4 37 98-134 14-50 (228)
116 PF09835 DUF2062: Uncharacteri 47.5 92 0.002 24.5 6.9 30 108-137 103-132 (154)
117 PF10146 zf-C4H2: Zinc finger- 45.7 8.3 0.00018 33.2 0.5 19 218-236 196-218 (230)
118 KOG3970 Predicted E3 ubiquitin 45.6 12 0.00027 32.0 1.5 41 197-238 52-106 (299)
119 PRK13836 conjugal transfer pro 44.7 25 0.00055 29.8 3.4 38 98-135 5-42 (220)
120 KOG1940 Zn-finger protein [Gen 44.5 6.3 0.00014 34.9 -0.4 45 197-243 160-212 (276)
121 cd00350 rubredoxin_like Rubred 44.0 13 0.00027 21.7 1.0 14 227-240 18-31 (33)
122 KOG2068 MOT2 transcription fac 43.3 16 0.00035 33.0 1.9 46 195-241 249-302 (327)
123 PF14316 DUF4381: Domain of un 42.5 73 0.0016 25.0 5.5 16 136-151 33-48 (146)
124 PF04423 Rad50_zn_hook: Rad50 42.1 9.2 0.0002 24.9 0.2 10 228-237 22-31 (54)
125 PF00558 Vpu: Vpu protein; In 41.8 41 0.0009 24.1 3.5 17 145-161 27-43 (81)
126 PF10176 DUF2370: Protein of u 41.3 57 0.0012 28.2 4.9 29 126-154 194-222 (233)
127 PRK01844 hypothetical protein; 39.9 1E+02 0.0022 21.7 5.0 24 127-150 8-31 (72)
128 PLN02189 cellulose synthase 39.8 17 0.00037 37.9 1.7 43 195-238 34-88 (1040)
129 PF07975 C1_4: TFIIH C1-like d 39.6 18 0.00039 23.6 1.3 21 212-233 26-50 (51)
130 smart00734 ZnF_Rad18 Rad18-lik 38.4 6 0.00013 22.0 -1.0 9 228-236 3-11 (26)
131 cd04488 RecG_wedge_OBF RecG_we 38.1 54 0.0012 21.5 3.6 31 69-100 41-71 (75)
132 KOG1815 Predicted E3 ubiquitin 37.6 12 0.00026 35.3 0.3 31 195-226 70-101 (444)
133 PHA02610 uvsY.-2 hypothetical 37.5 14 0.00031 24.1 0.5 15 227-241 2-16 (53)
134 KOG0298 DEAD box-containing he 37.1 8.1 0.00018 40.9 -1.0 42 195-237 1153-1199(1394)
135 PF11669 WBP-1: WW domain-bind 36.7 74 0.0016 23.7 4.4 10 123-132 21-30 (102)
136 PF09297 zf-NADH-PPase: NADH p 36.6 9.5 0.00021 22.0 -0.4 20 215-235 3-30 (32)
137 PF14569 zf-UDP: Zinc-binding 36.4 15 0.00032 26.2 0.5 43 195-238 9-63 (80)
138 PF10571 UPF0547: Uncharacteri 36.2 18 0.0004 20.1 0.8 7 227-233 15-21 (26)
139 PRK13887 conjugal transfer pro 36.2 45 0.00097 28.9 3.6 37 98-134 28-64 (250)
140 PF01102 Glycophorin_A: Glycop 34.9 64 0.0014 25.0 3.9 25 127-151 66-90 (122)
141 PF10886 DUF2685: Protein of u 34.1 19 0.00041 23.8 0.7 14 227-240 2-15 (54)
142 KOG2041 WD40 repeat protein [G 33.4 2.4E+02 0.0052 28.8 8.3 44 196-239 1132-1187(1189)
143 cd00729 rubredoxin_SM Rubredox 33.0 19 0.00041 21.2 0.5 14 227-240 19-32 (34)
144 KOG1952 Transcription factor N 32.4 19 0.00041 36.6 0.7 40 195-235 191-245 (950)
145 COG1198 PriA Primosomal protei 32.3 20 0.00044 36.1 0.9 15 212-226 440-454 (730)
146 PRK00398 rpoP DNA-directed RNA 31.8 15 0.00032 23.0 -0.1 21 217-237 4-32 (46)
147 PF00558 Vpu: Vpu protein; In 31.5 91 0.002 22.4 3.9 22 141-162 26-47 (81)
148 PF09237 GAGA: GAGA factor; I 30.7 6 0.00013 25.9 -2.0 7 196-202 25-31 (54)
149 PHA02862 5L protein; Provision 29.8 37 0.0008 27.2 1.8 43 195-237 2-53 (156)
150 PF10083 DUF2321: Uncharacteri 29.6 16 0.00034 29.6 -0.3 24 215-239 28-52 (158)
151 PTZ00473 Plasmodium Vir superf 28.9 35 0.00076 31.7 1.8 51 91-147 233-289 (420)
152 PF11190 DUF2976: Protein of u 28.7 2.3E+02 0.005 20.6 6.5 53 94-152 2-54 (87)
153 PF10217 DUF2039: Uncharacteri 28.4 20 0.00044 26.3 0.1 36 195-235 55-90 (92)
154 PF05439 JTB: Jumping transloc 28.0 20 0.00043 27.5 0.0 39 120-158 73-111 (114)
155 cd04478 RPA2_DBD_D RPA2_DBD_D: 27.8 1.4E+02 0.003 21.1 4.6 27 70-97 44-70 (95)
156 KOG4451 Uncharacterized conser 27.8 23 0.00049 30.5 0.3 19 218-236 251-273 (286)
157 COG1592 Rubrerythrin [Energy p 27.7 25 0.00053 28.8 0.5 24 212-239 139-162 (166)
158 KOG1815 Predicted E3 ubiquitin 27.5 27 0.00059 32.9 0.9 17 208-225 179-195 (444)
159 PF12868 DUF3824: Domain of un 27.4 84 0.0018 24.9 3.5 20 122-141 4-23 (137)
160 PF01336 tRNA_anti-codon: OB-f 27.0 70 0.0015 21.2 2.7 33 67-99 38-70 (75)
161 smart00834 CxxC_CXXC_SSSS Puta 26.9 24 0.00053 21.0 0.3 12 227-238 27-38 (41)
162 PRK01343 zinc-binding protein; 26.8 33 0.00071 22.9 0.9 10 228-237 11-20 (57)
163 KOG3053 Uncharacterized conser 26.5 27 0.00058 30.6 0.6 47 193-239 18-84 (293)
164 TIGR03141 cytochro_ccmD heme e 26.3 1.7E+02 0.0037 18.2 6.0 15 125-139 7-21 (45)
165 PRK11114 cellulose synthase re 26.0 1.9E+02 0.0041 29.4 6.5 13 103-115 704-716 (756)
166 PF09838 DUF2065: Uncharacteri 26.0 49 0.0011 22.0 1.6 38 103-140 15-53 (57)
167 COG3701 TrbF Type IV secretory 25.6 35 0.00075 28.9 1.0 46 100-145 16-61 (228)
168 PF12123 Amidase02_C: N-acetyl 25.4 75 0.0016 20.1 2.3 28 93-121 7-35 (45)
169 COG4306 Uncharacterized protei 25.1 24 0.00052 27.5 0.0 20 219-238 31-51 (160)
170 PF13240 zinc_ribbon_2: zinc-r 24.9 27 0.00058 18.7 0.2 17 219-235 2-22 (23)
171 COG3114 CcmD Heme exporter pro 24.5 2.4E+02 0.0052 19.3 6.9 19 124-142 17-35 (67)
172 KOG1819 FYVE finger-containing 24.4 1.1E+02 0.0025 29.5 4.3 28 196-224 902-933 (990)
173 PF07047 OPA3: Optic atrophy 3 24.2 2.9E+02 0.0064 21.4 6.1 13 103-115 60-72 (134)
174 PLN02400 cellulose synthase 24.1 56 0.0012 34.4 2.4 43 195-238 36-90 (1085)
175 COG4357 Zinc finger domain con 24.0 44 0.00094 24.8 1.2 14 227-240 81-94 (105)
176 TIGR00595 priA primosomal prot 23.7 36 0.00078 32.8 0.9 14 212-225 218-231 (505)
177 PF07295 DUF1451: Protein of u 23.5 42 0.00092 26.8 1.1 26 209-235 114-139 (146)
178 PLN02436 cellulose synthase A 23.5 49 0.0011 34.7 1.9 43 195-238 36-90 (1094)
179 PF14169 YdjO: Cold-inducible 23.3 43 0.00093 22.5 1.0 15 227-241 40-54 (59)
180 COG3105 Uncharacterized protei 22.9 2.9E+02 0.0064 21.7 5.6 8 125-132 8-15 (138)
181 PF03229 Alpha_GJ: Alphavirus 22.8 1.4E+02 0.0031 22.9 3.8 19 130-148 96-114 (126)
182 PF03672 UPF0154: Uncharacteri 22.3 1.8E+02 0.0039 19.9 3.9 16 133-148 7-22 (64)
183 PF15050 SCIMP: SCIMP protein 22.0 94 0.002 24.1 2.7 34 124-157 8-43 (133)
184 PF11694 DUF3290: Protein of u 21.9 1.6E+02 0.0034 23.6 4.1 10 119-128 12-21 (149)
185 PF02656 DUF202: Domain of unk 21.8 2.5E+02 0.0055 18.9 4.8 25 124-148 44-68 (73)
186 KOG0006 E3 ubiquitin-protein l 21.7 55 0.0012 29.7 1.6 27 197-224 223-251 (446)
187 PLN02915 cellulose synthase A 21.5 86 0.0019 32.9 3.1 44 194-238 14-69 (1044)
188 KOG1729 FYVE finger containing 21.2 24 0.00052 31.5 -0.8 41 194-235 167-223 (288)
189 KOG1705 Uncharacterized conser 20.9 41 0.00089 24.7 0.5 33 197-234 29-63 (110)
190 PF13248 zf-ribbon_3: zinc-rib 20.7 38 0.00082 18.5 0.2 17 219-235 5-25 (26)
191 PF06697 DUF1191: Protein of u 20.6 40 0.00087 29.9 0.5 16 86-101 159-174 (278)
192 PRK10801 colicin uptake protei 20.5 5.4E+02 0.012 21.9 7.7 39 113-151 5-43 (227)
193 COG3216 Uncharacterized protei 20.5 2.5E+02 0.0055 23.3 5.0 18 91-108 105-124 (184)
194 PRK00418 DNA gyrase inhibitor; 20.4 44 0.00096 22.7 0.6 11 227-237 7-17 (62)
195 PF07787 DUF1625: Protein of u 20.4 4.5E+02 0.0097 22.5 7.0 63 76-141 132-202 (248)
196 PF15099 PIRT: Phosphoinositid 20.4 1E+02 0.0022 24.1 2.6 15 72-86 51-65 (129)
197 TIGR02310 HpaB-2 4-hydroxyphen 20.4 3.7E+02 0.0081 26.1 7.0 63 64-127 13-105 (519)
198 PLN02638 cellulose synthase A 20.4 1.1E+02 0.0023 32.4 3.5 43 195-238 17-71 (1079)
199 KOG2034 Vacuolar sorting prote 20.3 61 0.0013 33.3 1.7 30 195-225 817-848 (911)
200 PHA03237 envelope glycoprotein 20.2 7.2E+02 0.016 23.6 8.6 16 135-150 338-353 (424)
201 PF14159 CAAD: CAAD domains of 20.2 2.7E+02 0.0059 20.2 4.8 30 135-164 55-84 (90)
202 COG3809 Uncharacterized protei 20.1 36 0.00078 24.3 0.1 8 227-234 22-29 (88)
203 PF12120 Arr-ms: Rifampin ADP- 20.1 31 0.00068 25.5 -0.2 30 18-47 51-80 (100)
204 PF10882 bPH_5: Bacterial PH d 20.1 1.9E+02 0.0041 20.7 4.0 29 91-120 70-98 (100)
205 PF10746 Phage_holin_6: Phage 20.1 3.1E+02 0.0066 18.9 4.8 27 122-148 34-60 (66)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-41 Score=294.77 Aligned_cols=233 Identities=37% Similarity=0.629 Sum_probs=205.9
Q ss_pred ccccc--ccCCcee----EEEecCCCcccceeeeeeEEeecCcc-cccccccccccceeeeceeeeecccCCCceeEEeE
Q 025999 12 INSRS--WDDGTGR----AFVVGARGATGFVLTVGSEVFEESGR-SLVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVG 84 (245)
Q Consensus 12 ~~~~~--~~d~~g~----V~V~~~~~a~~~~~~~~~~~f~~~~~-s~~~~~~~~~~g~~~~G~~~~E~~L~~G~~lt~vG 84 (245)
.|+.+ +.++++. |+|..++.+..++++++++.|+|+.+ +++++.++|++|.++.|++++|++||+|+.+|++|
T Consensus 114 ~~~~~~~l~~q~~~~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~ 193 (355)
T KOG1571|consen 114 GNEVPFFLRSQTTGFACEVRVSKTLGRLFLPLNVVYDLFEPSDPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRLTALG 193 (355)
T ss_pred CcccceeeccCCcceeeeeeeecceeeeeecceeeeccccccCcceeeecccccccceeeecccceEEeeccccceeeee
Confidence 34444 5667777 99999999999999999999999996 99999999999999999999999999999999999
Q ss_pred eEEecCCCCeEEeCCCCCCeEEecCChHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 025999 85 EAVKDDIGTVRIQRPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHYILQ--RKRRWELHRRVL 162 (245)
Q Consensus 85 e~~~d~~g~~~iq~P~~g~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~g~~ll~~~~~r~~~~--~r~~~~~~~~~~ 162 (245)
|++.|+.++.++|+|.+|++|++....++||..++++++.+++.+++++++++++|.+...++|.+ ++++.++.+...
T Consensus 194 e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~ 273 (355)
T KOG1571|consen 194 ELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVE 273 (355)
T ss_pred hheecCCCceEecCCccCcceeeccchhhHHHhhccceeeeeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999998899999999999766666669999999999999999999999999999999999999988 777777777666
Q ss_pred HHHHhhhhhcccCCCCCCCCCCCCCCccCCcccccceeccccccceEEccCCCcccchhhHhccCCCccccccccceeec
Q 025999 163 AAAAVKRSEQDNEGTNGQAENGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRT 242 (245)
Q Consensus 163 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i 242 (245)
.+++ .+.+....+....-++.+++...+...++.|+||.+++.+++|+||||+|||..|+..++.||+||+.|..++++
T Consensus 274 ~~~~-~rae~~s~g~~gtr~~~~~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~ 352 (355)
T KOG1571|consen 274 DLAT-VRAELLSRGVRGTRIQNENGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKR 352 (355)
T ss_pred hhhh-heeeeecccccccccccccCcccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHH
Confidence 6666 666655566555545556666666677889999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 025999 243 FRH 245 (245)
Q Consensus 243 ~~~ 245 (245)
|+|
T Consensus 353 y~~ 355 (355)
T KOG1571|consen 353 YRS 355 (355)
T ss_pred hcC
Confidence 987
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=99.95 E-value=1.2e-28 Score=200.63 Aligned_cols=128 Identities=38% Similarity=0.604 Sum_probs=119.0
Q ss_pred hhhhccccc----ccCCceeEEEecCCCcccceeeeeeEEeecCccccccccccccccee---eeceeeeecccCCCcee
Q 025999 8 SRVSINSRS----WDDGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLK---MLGVKRIERLLPTGTSL 80 (245)
Q Consensus 8 ~~~~~~~~~----~~d~~g~V~V~~~~~a~~~~~~~~~~~f~~~~~s~~~~~~~~~~g~~---~~G~~~~E~~L~~G~~l 80 (245)
++++++... ++|+||+|+|+++..++++++++++++|+|...+..+.++++++|.+ ++||+++|+|||+|++|
T Consensus 20 ~~v~~~~~~vPF~L~D~tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~~L~~G~~l 99 (160)
T PF12483_consen 20 RTVSSGTSEVPFYLEDGTGRVRVVDDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEEILPVGTPL 99 (160)
T ss_pred EEEEcceeEcCEEEECCceEEEEecCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEEEcCCCCEE
Confidence 445555555 89999999998888999999999999999998899999999999999 99999999999999999
Q ss_pred EEeEeEEecCCCCeEEeCCCCC--CeEEecCChHHHHHHhhhhhHHHHHHHHHHHHH
Q 025999 81 TVVGEAVKDDIGTVRIQRPHKG--PFYVSPKTIDELIENLGKWARWYKYASFGLTIF 135 (245)
Q Consensus 81 t~vGe~~~d~~g~~~iq~P~~g--~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~ 135 (245)
||+|++..|++|+++||+|++| |||||+++.++|++++.+++++|++++++++++
T Consensus 100 tvvGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~ 156 (160)
T PF12483_consen 100 TVVGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWLAIALGVV 156 (160)
T ss_pred EEEEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 9999999999999999999998 999999999999999999999999999998776
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.6e-14 Score=93.13 Aligned_cols=50 Identities=44% Similarity=1.099 Sum_probs=46.4
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccceeecccC
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~~~i~~~ 245 (245)
+.|.||++++.+.++.-|||+|.|+.|..++ ..||+||++|..+++.|++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5799999999999999999999999998876 3699999999999999986
No 4
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.2e-12 Score=116.34 Aligned_cols=53 Identities=36% Similarity=0.941 Sum_probs=47.5
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccceeecccC
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~i~~~ 245 (245)
+....|+||++..++.+++||.|+|+|..|+..+ .+|||||++|...+.++.+
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~ 344 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVN 344 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheeccc
Confidence 3456899999999999999999999999999987 4799999999999888753
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.27 E-value=1.3e-12 Score=85.84 Aligned_cols=44 Identities=43% Similarity=1.155 Sum_probs=38.5
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccce
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 239 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~ 239 (245)
..|.||++++.+++++||||.++|..|+.++ .+||+||++|+.+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4799999999999999999996699999988 7999999999864
No 6
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.4e-12 Score=112.55 Aligned_cols=51 Identities=43% Similarity=1.033 Sum_probs=49.1
Q ss_pred cccceeccccccceEEccCCCcccchhhHhccCCCccccccccceeecccC
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i~~~ 245 (245)
..+|.||++.|++++|++|||+..|..|-..+..|||||+.|.++++||++
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 569999999999999999999999999999999999999999999999985
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.7e-11 Score=102.02 Aligned_cols=45 Identities=36% Similarity=0.911 Sum_probs=40.6
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc----CCCcccccccccee
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 240 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~ 240 (245)
...|.+|+++..++..+||||+| ||.|+..| ..||+||.++....
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCcc
Confidence 35899999999999999999999 99999998 57999999987653
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.5e-10 Score=97.51 Aligned_cols=49 Identities=31% Similarity=0.762 Sum_probs=42.9
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc-------CCCcccccccc--ceeecc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRID--QVVRTF 243 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CPiCR~~i~--~~~~i~ 243 (245)
....|.||++..+++|++.|||+| ||.|+.+| +.||+|+..|. .++++|
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 345899999999999999999999 99999998 46999998774 577777
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.91 E-value=8.2e-10 Score=91.41 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=41.6
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc--------------------CCCccccccccc--eeecc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--------------------TNCPLCRRRIDQ--VVRTF 243 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~--------------------~~CPiCR~~i~~--~~~i~ 243 (245)
....|.||++...++++++|||.| |+.|+..| ..||+||.+|.. ++++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 356899999999999999999999 99999754 379999999965 55555
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.5e-08 Score=85.88 Aligned_cols=43 Identities=37% Similarity=0.765 Sum_probs=35.7
Q ss_pred ccceeccccccc---eEEccCCCcccchhhHhcc-----CCCccccccccce
Q 025999 196 DLCVICLEQEYN---AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQV 239 (245)
Q Consensus 196 ~~C~iC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~ 239 (245)
..|+||++.+.. ..+|||.|.| ...|+..| ..||+|++.|.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCCC
Confidence 589999998766 4668999999 56999998 3599999988653
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.59 E-value=2.6e-08 Score=85.68 Aligned_cols=47 Identities=32% Similarity=0.865 Sum_probs=38.6
Q ss_pred cccceeccccccc--------eEEccCCCcccchhhHhcc----CCCccccccccceeec
Q 025999 195 PDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 242 (245)
Q Consensus 195 ~~~C~iC~~~~~~--------~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~i 242 (245)
...|+||++...+ +++.+|||.| |..|+..| ..||+||.++..+.+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3489999997543 3566899999 99999888 5899999999987653
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.58 E-value=1.6e-08 Score=62.77 Aligned_cols=34 Identities=41% Similarity=1.082 Sum_probs=28.9
Q ss_pred ceeccccccce-EEccCCCcccchhhHhcc----CCCccc
Q 025999 198 CVICLEQEYNA-VFVPCGHMCCCIICSWHL----TNCPLC 232 (245)
Q Consensus 198 C~iC~~~~~~~-v~~pCgH~~~C~~C~~~~----~~CPiC 232 (245)
|+||++...++ ++++|||.| |..|+.++ .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 88999999999 689999999 99999876 589987
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.51 E-value=2.5e-08 Score=63.48 Aligned_cols=36 Identities=42% Similarity=0.919 Sum_probs=30.5
Q ss_pred cceeccccc---cceEEccCCCcccchhhHhcc----CCCcccc
Q 025999 197 LCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCR 233 (245)
Q Consensus 197 ~C~iC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CPiCR 233 (245)
.|+||++.. ..++.++|||.| |..|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 699999876 457788999999 99999988 6899997
No 14
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.2e-08 Score=82.37 Aligned_cols=47 Identities=36% Similarity=0.824 Sum_probs=44.1
Q ss_pred cceeccccccceEEccCCCcccchhhHhccCCCccccccccceeecc
Q 025999 197 LCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTF 243 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i~ 243 (245)
.|..|.++...++++||.|+++|..|...++.||+|+.++.+.+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999988889999999999888776
No 15
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4e-08 Score=91.18 Aligned_cols=48 Identities=35% Similarity=0.784 Sum_probs=41.4
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc---------CCCccccccccc--eeecc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ--VVRTF 243 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~---------~~CPiCR~~i~~--~~~i~ 243 (245)
...|+||++.+..++.+.|||+| |..|+.++ ..||+||..|.. +.+++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 56899999999999999999999 89998664 589999999987 55543
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5e-08 Score=79.17 Aligned_cols=47 Identities=34% Similarity=0.817 Sum_probs=37.6
Q ss_pred ccceeccccccceE--EccCCCcccchhhHhcc----CCCccccccccc--eeecc
Q 025999 196 DLCVICLEQEYNAV--FVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 243 (245)
Q Consensus 196 ~~C~iC~~~~~~~v--~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~--~~~i~ 243 (245)
..|+||++....-+ -+.|||+| |..|+... .+||+|+..|+. +.+||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 58999999886654 37999999 99999876 589999988865 34444
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.42 E-value=1.2e-07 Score=60.49 Aligned_cols=36 Identities=39% Similarity=1.046 Sum_probs=31.5
Q ss_pred ceeccccc---cceEEccCCCcccchhhHhccC----CCccccc
Q 025999 198 CVICLEQE---YNAVFVPCGHMCCCIICSWHLT----NCPLCRR 234 (245)
Q Consensus 198 C~iC~~~~---~~~v~~pCgH~~~C~~C~~~~~----~CPiCR~ 234 (245)
|.+|++.. ..+.+++|||.+ |..|+..+. .||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 88999877 457889999999 999999886 8999985
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.38 E-value=1.3e-07 Score=59.73 Aligned_cols=34 Identities=44% Similarity=1.001 Sum_probs=27.1
Q ss_pred ceeccccccceEEccCCCcccchhhHhcc--------CCCccc
Q 025999 198 CVICLEQEYNAVFVPCGHMCCCIICSWHL--------TNCPLC 232 (245)
Q Consensus 198 C~iC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CPiC 232 (245)
|+||++-..+++.++|||.| |..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 99999876 158887
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.35 E-value=1.1e-07 Score=79.90 Aligned_cols=46 Identities=35% Similarity=0.827 Sum_probs=37.0
Q ss_pred cccceeccccc---------cceEEccCCCcccchhhHhccC----------CCccccccccceee
Q 025999 195 PDLCVICLEQE---------YNAVFVPCGHMCCCIICSWHLT----------NCPLCRRRIDQVVR 241 (245)
Q Consensus 195 ~~~C~iC~~~~---------~~~v~~pCgH~~~C~~C~~~~~----------~CPiCR~~i~~~~~ 241 (245)
+..|.||++.. +..++.+|+|.| |..|+..|. .||+||..+..+.+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 45899999863 235777999999 999999882 29999999887643
No 20
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.3e-07 Score=91.53 Aligned_cols=47 Identities=30% Similarity=0.640 Sum_probs=40.7
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc--eeecc
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ--VVRTF 243 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~--~~~i~ 243 (245)
-.|++|.+++++++++.|||+| |..|.... .+||.|..++.. +.+||
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 3899999999999999999999 99999765 699999999865 44444
No 21
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4e-07 Score=78.25 Aligned_cols=43 Identities=35% Similarity=0.875 Sum_probs=37.8
Q ss_pred cccceeccccccceEEccCCCcccchhhHhc-c-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWH-L-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~-~-----~~CPiCR~~i~~ 238 (245)
...|++|++.+..+..+||||+| |+.|+.. | ..||+||+.+..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhccc
Confidence 45799999999999999999999 9999977 5 259999998754
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.21 E-value=4.7e-07 Score=56.53 Aligned_cols=34 Identities=47% Similarity=1.112 Sum_probs=30.4
Q ss_pred ceeccccccceE-EccCCCcccchhhHhcc------CCCccc
Q 025999 198 CVICLEQEYNAV-FVPCGHMCCCIICSWHL------TNCPLC 232 (245)
Q Consensus 198 C~iC~~~~~~~v-~~pCgH~~~C~~C~~~~------~~CPiC 232 (245)
|.||++.....+ +++|||.| |..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 789999999998 89999999 99998776 479987
No 23
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.15 E-value=1.1e-06 Score=55.00 Aligned_cols=39 Identities=46% Similarity=1.024 Sum_probs=31.1
Q ss_pred cceeccccccceEEc-cCCCcccchhhHhcc-----CCCccccccc
Q 025999 197 LCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRI 236 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~-----~~CPiCR~~i 236 (245)
.|.||++.....+.+ +|||.+ |..|...+ ..||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999998555554 599999 99999765 4799998764
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.11 E-value=1.6e-06 Score=58.98 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=37.2
Q ss_pred cceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 197 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.|+||.+...+++.+||||.| |..|+..+ .+||+|+.++..
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCCh
Confidence 699999999999999999999 99999877 589999998843
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.09 E-value=1.4e-06 Score=52.48 Aligned_cols=34 Identities=44% Similarity=1.150 Sum_probs=30.2
Q ss_pred ceeccccccceEEccCCCcccchhhHhcc-----CCCccc
Q 025999 198 CVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLC 232 (245)
Q Consensus 198 C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiC 232 (245)
|.||++....++++||||.+ |..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999998 99999865 469987
No 26
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=8.5e-06 Score=73.21 Aligned_cols=42 Identities=31% Similarity=0.872 Sum_probs=33.8
Q ss_pred ccccceeccccc-------------cceEEccCCCcccchhhHhcc----CCCccccccc
Q 025999 194 MPDLCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 236 (245)
Q Consensus 194 ~~~~C~iC~~~~-------------~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i 236 (245)
++..|.||++.- ..+-=+||||.. --.|...| ++||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 345899999871 223557999998 89999988 6999999984
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.09 E-value=1.2e-06 Score=80.67 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=39.1
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
+....|.||.+....++++||||.| |..|+..+ ..||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 3455899999999999999999999 99999865 479999998764
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.92 E-value=3e-06 Score=53.67 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=18.2
Q ss_pred ceeccccccc----eEEccCCCcccchhhHhcc
Q 025999 198 CVICLEQEYN----AVFVPCGHMCCCIICSWHL 226 (245)
Q Consensus 198 C~iC~~~~~~----~v~~pCgH~~~C~~C~~~~ 226 (245)
|+||.+ ..+ ++++||||.+ |.+|+.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHH
Confidence 889998 777 8999999999 99999877
No 29
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.92 E-value=2.8e-06 Score=76.87 Aligned_cols=45 Identities=36% Similarity=0.877 Sum_probs=40.4
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc------CCCccccccccceee
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVVR 241 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CPiCR~~i~~~~~ 241 (245)
.+|.||-++.+++-+-||||+. |..|...| ..||.||..|...-+
T Consensus 370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 4999999999999999999998 99999888 489999999987543
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.79 E-value=7.4e-06 Score=71.39 Aligned_cols=42 Identities=29% Similarity=0.574 Sum_probs=37.6
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 236 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i 236 (245)
....|-||-...+.++.++|||.| |.-|+... +.||+||.+.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccH
Confidence 345899999999999999999999 99999876 7899999764
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.1e-05 Score=70.65 Aligned_cols=43 Identities=28% Similarity=0.650 Sum_probs=36.0
Q ss_pred cccceecccccc---ceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~---~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
.-.|+||+++.. ..+++||.|.| ...|..+| -+||+||++|..
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCCC
Confidence 358999998763 36788999999 89999998 479999998854
No 32
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.70 E-value=1.6e-05 Score=56.23 Aligned_cols=36 Identities=42% Similarity=0.945 Sum_probs=28.0
Q ss_pred cceeccccc-------------cceEEccCCCcccchhhHhcc----CCCcccc
Q 025999 197 LCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCR 233 (245)
Q Consensus 197 ~C~iC~~~~-------------~~~v~~pCgH~~~C~~C~~~~----~~CPiCR 233 (245)
.|.||++.. ..++..+|||.| ...|+.+| ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 499999766 223556899999 99999988 5899997
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.69 E-value=9.7e-06 Score=72.02 Aligned_cols=43 Identities=28% Similarity=0.711 Sum_probs=38.4
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
-..|-||.+-++.++++||+|.| |.-|+... +.||.|+.++..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 34899999999999999999999 99999876 789999987753
No 34
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.3e-05 Score=71.62 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=39.0
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
++++|+||+..+.+++|.||+|.- |..|+.+. +.|-.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 356999999999999999999998 99999765 789999988764
No 35
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.50 E-value=0.00012 Score=65.49 Aligned_cols=47 Identities=36% Similarity=0.764 Sum_probs=40.0
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc------CCCcccccccccee
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVV 240 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CPiCR~~i~~~~ 240 (245)
++...|+||-..-.-..++||+|.. |..|+.++ +.||+||..-+.++
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence 4456999999998888899999999 99999876 68999998776654
No 36
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0002 Score=69.02 Aligned_cols=42 Identities=36% Similarity=0.838 Sum_probs=36.5
Q ss_pred ccccceeccccccc-----eEEccCCCcccchhhHhcc----CCCccccccc
Q 025999 194 MPDLCVICLEQEYN-----AVFVPCGHMCCCIICSWHL----TNCPLCRRRI 236 (245)
Q Consensus 194 ~~~~C~iC~~~~~~-----~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i 236 (245)
....|.||.+.-.. +..+||||.| |..|...| ..||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 35589999998777 7889999999 99999998 6899999843
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=4e-05 Score=66.44 Aligned_cols=40 Identities=40% Similarity=0.860 Sum_probs=35.3
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc----CCCccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRR 234 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~ 234 (245)
....|.||++....+.++||||.| |..|+..+ ..||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 345899999999999999999999 99999876 38999993
No 38
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.41 E-value=7.9e-05 Score=49.22 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=37.1
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc--CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~--~~CPiCR~~i~~ 238 (245)
...|+.|......-+++||||+. |..|.... .-||+|-++|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 34799999999899999999999 99997544 689999999875
No 39
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.32 E-value=0.0001 Score=51.99 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=34.2
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|+||.+-..+++++||||.| +..|+..+ ..||+|+.++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45899999999999999999999 99999887 469999998876
No 40
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.31 E-value=6.1e-05 Score=62.39 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=39.1
Q ss_pred CcccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 192 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 192 ~~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
...+..|.||...+..+|++.|||-| |..|+..- +.|.+|......
T Consensus 193 e~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 193 EKIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred CCCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhcc
Confidence 34577999999999999999999999 99998764 689999876544
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.31 E-value=9.4e-05 Score=50.47 Aligned_cols=40 Identities=28% Similarity=0.718 Sum_probs=22.6
Q ss_pred ccceeccccccceE-EccCCCcccchhhHhcc--CCCccccccc
Q 025999 196 DLCVICLEQEYNAV-FVPCGHMCCCIICSWHL--TNCPLCRRRI 236 (245)
Q Consensus 196 ~~C~iC~~~~~~~v-~~pCgH~~~C~~C~~~~--~~CPiCR~~i 236 (245)
..|.+|.+--+.++ +..|.|.| |..|+..- ..||+|+.|-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B--TTTGGGGTTTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcCCCCCCcCChH
Confidence 37999999999996 56999999 99999876 6899999875
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00023 Score=62.38 Aligned_cols=48 Identities=27% Similarity=0.737 Sum_probs=41.2
Q ss_pred CcccccceeccccccceEEccCCCcccchhhHhcc----CCCcccccccccee
Q 025999 192 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 240 (245)
Q Consensus 192 ~~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~ 240 (245)
...+..|-||..-+.++|+..|||.| |..|+..- ..|++|-+.+.++.
T Consensus 238 ~~~Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 238 ELLPFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccCCccccccccccccchhhcCCcee-ehhhhccccccCCcceeccccccccc
Confidence 34566899999999999999999999 99998764 58999999887653
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00016 Score=64.75 Aligned_cols=44 Identities=30% Similarity=0.793 Sum_probs=36.7
Q ss_pred cccceeccccccceEEc-cCCCcccchhhHhcc-----CCCccccccccce
Q 025999 195 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRIDQV 239 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~ 239 (245)
...|.||++--+..+-+ -|+|.| |.+|++.- ..||-||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 44899999998877665 599999 99999865 5899999987664
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00071 Score=62.53 Aligned_cols=45 Identities=36% Similarity=0.808 Sum_probs=38.6
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
-.+..|.||+.....++.+||||.+ |..|+.+. ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 3456899999999999999999999 99996654 689999988764
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00083 Score=60.89 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=37.5
Q ss_pred cccceeccccccceE-----E---ccCCCcccchhhHhcc-----------CCCccccccccceee
Q 025999 195 PDLCVICLEQEYNAV-----F---VPCGHMCCCIICSWHL-----------TNCPLCRRRIDQVVR 241 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v-----~---~pCgH~~~C~~C~~~~-----------~~CPiCR~~i~~~~~ 241 (245)
...|.||+++..... | .+|.|.+ |..|+..| +.||.||.+...+.+
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999877665 4 6799999 99999887 469999998876543
No 46
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.58 E-value=0.0013 Score=47.51 Aligned_cols=28 Identities=29% Similarity=0.749 Sum_probs=23.4
Q ss_pred EEccCCCcccchhhHhcc-------CCCcccccccc
Q 025999 209 VFVPCGHMCCCIICSWHL-------TNCPLCRRRID 237 (245)
Q Consensus 209 v~~pCgH~~~C~~C~~~~-------~~CPiCR~~i~ 237 (245)
++-.|+|.| ...|+.++ ..||+||++..
T Consensus 48 v~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 455899999 89999877 47999999764
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00068 Score=63.22 Aligned_cols=43 Identities=30% Similarity=0.753 Sum_probs=35.0
Q ss_pred cccceecccc-----------------ccceEEccCCCcccchhhHhcc----C-CCccccccccc
Q 025999 195 PDLCVICLEQ-----------------EYNAVFVPCGHMCCCIICSWHL----T-NCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~-----------------~~~~v~~pCgH~~~C~~C~~~~----~-~CPiCR~~i~~ 238 (245)
...|+||+.. .++.+++||.|++ -..|..+| + .||+||+++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCCC
Confidence 4479999963 3456778999999 89999988 3 79999999864
No 48
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.002 Score=56.08 Aligned_cols=47 Identities=26% Similarity=0.660 Sum_probs=37.8
Q ss_pred CcccccceeccccccceEEc-cCCCcccchhhHhcc------CCCccccccccce
Q 025999 192 RVMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPLCRRRIDQV 239 (245)
Q Consensus 192 ~~~~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CPiCR~~i~~~ 239 (245)
......|++|-+.|..+... +|||++ |+.|+..- -.||.|..++...
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcch
Confidence 34456899999999988554 799999 99998764 2899999887643
No 49
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.033 Score=48.52 Aligned_cols=46 Identities=22% Similarity=0.615 Sum_probs=35.7
Q ss_pred Ccccccceeccccccce----------EEccCCCcccchhhHhcc------CCCccccccccc
Q 025999 192 RVMPDLCVICLEQEYNA----------VFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 238 (245)
Q Consensus 192 ~~~~~~C~iC~~~~~~~----------v~~pCgH~~~C~~C~~~~------~~CPiCR~~i~~ 238 (245)
..+++.|.||-...-.. .-+.|+|+| -+.|+.-| ++||.|+..|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 44556899998654332 346999999 89999988 589999988865
No 50
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0073 Score=53.83 Aligned_cols=50 Identities=24% Similarity=0.652 Sum_probs=36.1
Q ss_pred cccccceeccccccceEEccC-CCcccchhhHhcc----CCCccccccc--cceeecc
Q 025999 193 VMPDLCVICLEQEYNAVFVPC-GHMCCCIICSWHL----TNCPLCRRRI--DQVVRTF 243 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pC-gH~~~C~~C~~~~----~~CPiCR~~i--~~~~~i~ 243 (245)
.+...|+||+....++.++.- |-+| |+.|+.+. ..||+-..+. ...+++|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 445699999999888766654 8888 99998775 6899855443 3344444
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.01 E-value=0.0045 Score=57.26 Aligned_cols=41 Identities=29% Similarity=0.753 Sum_probs=31.7
Q ss_pred ccccceeccccccce----EEccCCCcccchhhHhcc--CCCcccccc
Q 025999 194 MPDLCVICLEQEYNA----VFVPCGHMCCCIICSWHL--TNCPLCRRR 235 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~----v~~pCgH~~~C~~C~~~~--~~CPiCR~~ 235 (245)
+-+.|+||+++--.- +-++|.|-|-| .|...| ..||+||--
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~~scpvcR~~ 220 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWDSSCPVCRYC 220 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccch-HHHhhcccCcChhhhhh
Confidence 345999999886442 34589999965 999998 589999843
No 52
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.53 E-value=0.0059 Score=54.54 Aligned_cols=44 Identities=30% Similarity=0.787 Sum_probs=36.7
Q ss_pred ccccceeccccccceEEccC--CCcccchhhHhcc-CCCccccccccce
Q 025999 194 MPDLCVICLEQEYNAVFVPC--GHMCCCIICSWHL-TNCPLCRRRIDQV 239 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CPiCR~~i~~~ 239 (245)
+-..|+||.+.-..+++ .| ||+. |..|...+ .+||.||.+|..+
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcccCCccccccccH
Confidence 34489999999999887 66 7998 99999655 6999999999854
No 53
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.11 E-value=0.017 Score=50.66 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=37.2
Q ss_pred Ccccccceeccccc----cceEEccCCCcccchhhHhccC---CCccccccccc
Q 025999 192 RVMPDLCVICLEQE----YNAVFVPCGHMCCCIICSWHLT---NCPLCRRRIDQ 238 (245)
Q Consensus 192 ~~~~~~C~iC~~~~----~~~v~~pCgH~~~C~~C~~~~~---~CPiCR~~i~~ 238 (245)
......|+|..... +.+.+.||||++ ++.++..++ .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhcccccccccCCcccc
Confidence 34566999998654 445667999999 999999886 79999999875
No 54
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.85 E-value=0.0056 Score=60.13 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=33.2
Q ss_pred ccceeccccccceEE---ccCCCcccchhhHhcc----CCCccccccccceee
Q 025999 196 DLCVICLEQEYNAVF---VPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 241 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~---~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~ 241 (245)
..|.+|+....+-.. .+|+|.| |..|+..| .+||+||.-+..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeee
Confidence 366777665544322 3899999 99999998 589999988776543
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.66 E-value=0.014 Score=54.11 Aligned_cols=46 Identities=33% Similarity=0.731 Sum_probs=39.1
Q ss_pred ccccceeccccccceEE-ccCCCcccchhhHhcc----CCCcccccccccee
Q 025999 194 MPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 240 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~-~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~ 240 (245)
.+..|.+|...-.+++- +.|||.| |..|+..+ ..||.|++.+....
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchhh
Confidence 44589999999999988 4999999 99999887 58999998876543
No 56
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.53 E-value=0.013 Score=57.82 Aligned_cols=41 Identities=32% Similarity=0.797 Sum_probs=35.1
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc------CCCccccccccc
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 238 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CPiCR~~i~~ 238 (245)
..|.+|.+ ...+++++|||.+ |..|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 8888899999999 99998765 479999987653
No 57
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.019 Score=50.89 Aligned_cols=45 Identities=27% Similarity=0.679 Sum_probs=32.3
Q ss_pred cccceeccccccc-eEEccCCCcccchhhHhcc--CCCcccccccccee
Q 025999 195 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVV 240 (245)
Q Consensus 195 ~~~C~iC~~~~~~-~v~~pCgH~~~C~~C~~~~--~~CPiCR~~i~~~~ 240 (245)
-..|.-|--.... .-++||.|+| |.+|+..- +.||.|-.+|.++.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVF-CLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred eEeecccCCcceeeecccccchhh-hhhhhhcCccccCcCcccHHHHHH
Confidence 4467777543322 2346999999 99998765 69999987776643
No 58
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.022 Score=52.29 Aligned_cols=31 Identities=32% Similarity=0.757 Sum_probs=25.6
Q ss_pred cccceeccccccc---eEEccCCCcccchhhHhcc
Q 025999 195 PDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL 226 (245)
Q Consensus 195 ~~~C~iC~~~~~~---~v~~pCgH~~~C~~C~~~~ 226 (245)
...|.||++...- .+++||+|++ |..|....
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY 217 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDY 217 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHHH
Confidence 4589999987644 6889999999 99998654
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.79 E-value=0.015 Score=54.97 Aligned_cols=41 Identities=22% Similarity=0.635 Sum_probs=35.1
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc---------CCCccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRI 236 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~---------~~CPiCR~~i 236 (245)
...|.+|.+...+++...|.|.| |.-|+... .+||.|-...
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 44899999999999999999999 99998554 5899996543
No 60
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.52 E-value=0.028 Score=43.91 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=37.1
Q ss_pred ccceeccccccceEEc----cCCCcccchhhHhcc-------CCCccccccccceee
Q 025999 196 DLCVICLEQEYNAVFV----PCGHMCCCIICSWHL-------TNCPLCRRRIDQVVR 241 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~----pCgH~~~C~~C~~~~-------~~CPiCR~~i~~~~~ 241 (245)
-.|-||.+...+.-|+ =||-.. |..|...+ +.||+|++++.+...
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred eeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccccc
Confidence 3799999999998888 288776 99998765 799999999876543
No 61
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=93.17 E-value=0.047 Score=35.36 Aligned_cols=36 Identities=25% Similarity=0.729 Sum_probs=27.9
Q ss_pred cceeccc--cccceEEccCC-----CcccchhhHhcc------CCCcccc
Q 025999 197 LCVICLE--QEYNAVFVPCG-----HMCCCIICSWHL------TNCPLCR 233 (245)
Q Consensus 197 ~C~iC~~--~~~~~v~~pCg-----H~~~C~~C~~~~------~~CPiCR 233 (245)
.|-||++ ...++.+.||. |.+ -..|..+| ..||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 3889996 55667788996 555 78999888 3799994
No 62
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.11 E-value=0.23 Score=36.83 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=22.4
Q ss_pred cccceeccccccc--eEEccCCCcccchhhHh
Q 025999 195 PDLCVICLEQEYN--AVFVPCGHMCCCIICSW 224 (245)
Q Consensus 195 ~~~C~iC~~~~~~--~v~~pCgH~~~C~~C~~ 224 (245)
...|.+|.....+ .++.||||++ ...|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 4579999987654 4456999999 888865
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=0.11 Score=44.89 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=34.2
Q ss_pred cccceeccccccc----eEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~----~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
...|+||.+.-.+ +++-||||++ |..|...+ ..||+|-.+...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 3589999986554 4566999999 99999887 479999877643
No 64
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=90.40 E-value=0.069 Score=47.25 Aligned_cols=40 Identities=35% Similarity=0.741 Sum_probs=29.8
Q ss_pred cceeccccccc---eEEccCCCcccchhhHhcc---------------------------CCCcccccccc
Q 025999 197 LCVICLEQEYN---AVFVPCGHMCCCIICSWHL---------------------------TNCPLCRRRID 237 (245)
Q Consensus 197 ~C~iC~~~~~~---~v~~pCgH~~~C~~C~~~~---------------------------~~CPiCR~~i~ 237 (245)
.|+||+..+.+ .+.++|-|.+ -..|..+. ..||+||.+|.
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~-H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYM-HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 69999877654 4667999998 55785432 25999998874
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=90.15 E-value=0.14 Score=53.97 Aligned_cols=46 Identities=26% Similarity=0.853 Sum_probs=34.4
Q ss_pred cccccceeccccc---cceEEccCCCcccchhhHhcc--------------CCCccccccccce
Q 025999 193 VMPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL--------------TNCPLCRRRIDQV 239 (245)
Q Consensus 193 ~~~~~C~iC~~~~---~~~v~~pCgH~~~C~~C~~~~--------------~~CPiCR~~i~~~ 239 (245)
+..+.|+||+... .-++-+.|+|+| -..|-..+ ..||+|..+|.-+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3456999999764 335678999999 67776443 3699999998754
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=88.97 E-value=0.086 Score=47.20 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=36.8
Q ss_pred cccceeccccccceEE-ccCCCcccchhhHhcc----CCCccccccccceee
Q 025999 195 PDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 241 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~-~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~ 241 (245)
-..|.+|-.=..++.- .-|-|-| |.+|+... ..||.|...|-...+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccc
Confidence 3479999987777644 4799999 99999765 689999988877643
No 67
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=88.96 E-value=0.19 Score=33.59 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=25.5
Q ss_pred cccccceeccccccceEEc-cCCCcccchhhHhcc------CCCcc
Q 025999 193 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPL 231 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CPi 231 (245)
.....|+|.+....+++.- .|||.| ....+.++ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 3455899999999999874 899999 88888776 36988
No 68
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.39 E-value=0.2 Score=44.43 Aligned_cols=39 Identities=33% Similarity=0.682 Sum_probs=32.6
Q ss_pred cccceeccccccceEEcc-CCCcccchhhHhcc-----CCCccccc
Q 025999 195 PDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL-----TNCPLCRR 234 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~p-CgH~~~C~~C~~~~-----~~CPiCR~ 234 (245)
...|..|.---++++-+| |+|.| |..|+... ..||.|.+
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 358999998888888875 78998 99999843 58999976
No 69
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=88.02 E-value=0.41 Score=42.78 Aligned_cols=47 Identities=4% Similarity=-0.183 Sum_probs=40.5
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc--CCCccccccccceeec
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVVRT 242 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~--~~CPiCR~~i~~~~~i 242 (245)
..|.+|-.+--..+..||+|...|..|+..- +.||.|.......++|
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 4899999999999999999999999998744 7999998777666665
No 70
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.99 E-value=0.13 Score=35.83 Aligned_cols=41 Identities=27% Similarity=0.657 Sum_probs=19.2
Q ss_pred cceecccccc-c---eEEc----cCCCcccchhhHhcc---------------CCCccccccccc
Q 025999 197 LCVICLEQEY-N---AVFV----PCGHMCCCIICSWHL---------------TNCPLCRRRIDQ 238 (245)
Q Consensus 197 ~C~iC~~~~~-~---~v~~----pCgH~~~C~~C~~~~---------------~~CPiCR~~i~~ 238 (245)
.|.||++..- . +.++ .|++.+ -..|+..| .+||.|+.+|.-
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 6999997643 1 2221 577777 77898776 159999999863
No 71
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=87.13 E-value=0.18 Score=46.27 Aligned_cols=43 Identities=28% Similarity=0.727 Sum_probs=0.0
Q ss_pred cccceecccc-------------------ccceEEccCCCcccchhhHhcc-------------CCCccccccccc
Q 025999 195 PDLCVICLEQ-------------------EYNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~-------------------~~~~v~~pCgH~~~C~~C~~~~-------------~~CPiCR~~i~~ 238 (245)
...|++|+.. +...+|.||||++ =+..+.-| ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 4589999852 3445788999998 35554433 369999999875
No 72
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.04 E-value=1.1 Score=41.21 Aligned_cols=41 Identities=29% Similarity=0.775 Sum_probs=27.5
Q ss_pred cccceeccccccceEEc-cC---------------------CCcccchhhHhcc-----------------CCCcccccc
Q 025999 195 PDLCVICLEQEYNAVFV-PC---------------------GHMCCCIICSWHL-----------------TNCPLCRRR 235 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~-pC---------------------gH~~~C~~C~~~~-----------------~~CPiCR~~ 235 (245)
.+.|.-|+....++.+. .| .-+. |-+|..+| ..||.||++
T Consensus 271 ~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 271 LEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred cCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 34688888777776654 23 2233 77887665 269999987
Q ss_pred c
Q 025999 236 I 236 (245)
Q Consensus 236 i 236 (245)
+
T Consensus 350 F 350 (358)
T PF10272_consen 350 F 350 (358)
T ss_pred c
Confidence 5
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.96 E-value=0.25 Score=44.50 Aligned_cols=43 Identities=37% Similarity=0.960 Sum_probs=30.9
Q ss_pred cccceecccccc--ceEEc--cCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEY--NAVFV--PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~--~~v~~--pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
++.|+.|++..- +--|. |||... |.-|...+ .+||-||+..+.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence 446999998642 22344 677777 99998766 489999987643
No 74
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.93 E-value=0.19 Score=50.83 Aligned_cols=41 Identities=29% Similarity=0.651 Sum_probs=29.9
Q ss_pred cceecccccc-------ceEEccCCCcccchhhHhcc------CCCccccccccc
Q 025999 197 LCVICLEQEY-------NAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 238 (245)
Q Consensus 197 ~C~iC~~~~~-------~~v~~pCgH~~~C~~C~~~~------~~CPiCR~~i~~ 238 (245)
.|.||+..-. .-..-.|.|-| ...|.-.| .+||+||..|+-
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCcccccccc
Confidence 6999996322 11112588999 89999888 589999988763
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=85.18 E-value=0.51 Score=33.66 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=28.6
Q ss_pred cceeccc---cccc--eEEccCCCcccchhhHhcc----CCCcccccccc
Q 025999 197 LCVICLE---QEYN--AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 237 (245)
Q Consensus 197 ~C~iC~~---~~~~--~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~ 237 (245)
.|+-|.. ...+ ++.--|.|.| -.-|+.++ ..||++|++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence 5666655 2222 2334799999 89999988 47999998764
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=84.76 E-value=0.38 Score=31.05 Aligned_cols=27 Identities=33% Similarity=0.856 Sum_probs=12.8
Q ss_pred EEc--cCCCcccchhhHhcc-----CCCccccccc
Q 025999 209 VFV--PCGHMCCCIICSWHL-----TNCPLCRRRI 236 (245)
Q Consensus 209 v~~--pCgH~~~C~~C~~~~-----~~CPiCR~~i 236 (245)
.|. +||+.. |..|...+ ..||-||.+.
T Consensus 14 ~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 14 DFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp T--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred ccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 355 477887 99997765 4799999874
No 77
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.70 E-value=0.23 Score=42.75 Aligned_cols=39 Identities=26% Similarity=0.712 Sum_probs=27.6
Q ss_pred cccceeccccc---cceEEc--c-CCCcccchhhHhcc-----CCCc--cccc
Q 025999 195 PDLCVICLEQE---YNAVFV--P-CGHMCCCIICSWHL-----TNCP--LCRR 234 (245)
Q Consensus 195 ~~~C~iC~~~~---~~~v~~--p-CgH~~~C~~C~~~~-----~~CP--iCR~ 234 (245)
...|++|.... .++.++ | |-|.. |.+|..++ ..|| -|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence 34899998632 223333 6 99999 99999887 4799 7753
No 78
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=84.19 E-value=0.62 Score=41.69 Aligned_cols=43 Identities=26% Similarity=0.642 Sum_probs=28.2
Q ss_pred cccceecccc-------------------ccceEEccCCCcccchhhHhcc-------------CCCccccccccc
Q 025999 195 PDLCVICLEQ-------------------EYNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~-------------------~~~~v~~pCgH~~~C~~C~~~~-------------~~CPiCR~~i~~ 238 (245)
...|++|+.. +..-.|-||||+|. +.=..=| ..||.|-+.+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4589999863 23346779999973 3222111 369999888765
No 79
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=83.44 E-value=0.34 Score=38.11 Aligned_cols=30 Identities=33% Similarity=0.658 Sum_probs=25.1
Q ss_pred ccceeccccccc---eEEccCC------CcccchhhHhcc
Q 025999 196 DLCVICLEQEYN---AVFVPCG------HMCCCIICSWHL 226 (245)
Q Consensus 196 ~~C~iC~~~~~~---~v~~pCg------H~~~C~~C~~~~ 226 (245)
..|.||+++..+ +|.++|| |++ |..|..+|
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw 65 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRW 65 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHH
Confidence 379999998765 6778898 777 99999988
No 80
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.94 E-value=0.35 Score=34.21 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=26.5
Q ss_pred cceeccccccceEE--ccCCCcccchhhHhcc-------CCCcccccccc
Q 025999 197 LCVICLEQEYNAVF--VPCGHMCCCIICSWHL-------TNCPLCRRRID 237 (245)
Q Consensus 197 ~C~iC~~~~~~~v~--~pCgH~~~C~~C~~~~-------~~CPiCR~~i~ 237 (245)
.|+-|.-..-+.-+ --|.|.| -.-|+..+ ..||+||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence 34444443333322 2699999 78999887 37999998753
No 81
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=80.36 E-value=0.82 Score=29.36 Aligned_cols=42 Identities=19% Similarity=0.615 Sum_probs=23.4
Q ss_pred cceeccccccceEEccCCCcccchhhHhcc----CCCcccccccccee
Q 025999 197 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 240 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~ 240 (245)
-|.-|.-..+..+ .|.--++|-.|...+ ..||+|..++...+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 4777776666654 688666699999877 57999998876543
No 82
>PHA03096 p28-like protein; Provisional
Probab=79.17 E-value=0.64 Score=41.34 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=23.6
Q ss_pred ccceecccccc--------ceEEccCCCcccchhhHhcc
Q 025999 196 DLCVICLEQEY--------NAVFVPCGHMCCCIICSWHL 226 (245)
Q Consensus 196 ~~C~iC~~~~~--------~~v~~pCgH~~~C~~C~~~~ 226 (245)
..|-||+++.. ..++-.|.|.| |-.|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHH
Confidence 36999998643 34556899999 99999877
No 83
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.61 E-value=0.89 Score=40.11 Aligned_cols=31 Identities=35% Similarity=0.774 Sum_probs=26.7
Q ss_pred ccccceeccccccceEEccCC----CcccchhhHhc
Q 025999 194 MPDLCVICLEQEYNAVFVPCG----HMCCCIICSWH 225 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCg----H~~~C~~C~~~ 225 (245)
....|.+|.++--+..|+.|- |-| |+.|+..
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRe 301 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRE 301 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccce-ecccCHH
Confidence 345899999999999999985 888 9999754
No 84
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.45 E-value=0.74 Score=45.35 Aligned_cols=41 Identities=32% Similarity=0.782 Sum_probs=35.5
Q ss_pred cceeccccccceEEccCCCcccchhhHhcc-------CCCccccccccc
Q 025999 197 LCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 238 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 238 (245)
.|.||.....+.+.+.|.|.+ |..|.... ..||+|+..++.
T Consensus 23 Ec~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 23 ECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred cCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 699999999999999999999 99997654 479999977765
No 85
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.30 E-value=1 Score=43.91 Aligned_cols=38 Identities=39% Similarity=0.820 Sum_probs=29.7
Q ss_pred cccceecccc----ccceEEccCCCcccchhhHhcc--CCCccccc
Q 025999 195 PDLCVICLEQ----EYNAVFVPCGHMCCCIICSWHL--TNCPLCRR 234 (245)
Q Consensus 195 ~~~C~iC~~~----~~~~v~~pCgH~~~C~~C~~~~--~~CPiCR~ 234 (245)
--.|.||+.. ...++++-|||.. |..|...+ ..|| |..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhccCC-CCc
Confidence 3479999654 3557888999999 99999988 6898 643
No 86
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.63 E-value=5.2 Score=31.51 Aligned_cols=39 Identities=33% Similarity=0.861 Sum_probs=22.2
Q ss_pred cccceeccccccceEEccCCCcc------cchhhHhcc--------CCCccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMC------CCIICSWHL--------TNCPLCRRRI 236 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~------~C~~C~~~~--------~~CPiCR~~i 236 (245)
...|-||....-. --|||.| +|..|--+. ..|-+|+...
T Consensus 65 datC~IC~KTKFA---DG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKTKFA---DGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhcccc---cccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 3489999954311 2489986 244443322 2577776543
No 87
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=72.33 E-value=2.4 Score=34.36 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=32.0
Q ss_pred cccccceeccccccceEEccCCCcc----cchhhHhcc------CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMC----CCIICSWHL------TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~----~C~~C~~~~------~~CPiCR~~i~~ 238 (245)
..+..|-||++.... ..-||.... .-.+|..+| ..|++|..+..-
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345589999988754 345777533 356798887 589999987643
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.81 E-value=5 Score=40.52 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=34.5
Q ss_pred ccceeccccccce-EEccCCCcccchhhHhcc-CCCccccccccceeecc
Q 025999 196 DLCVICLEQEYNA-VFVPCGHMCCCIICSWHL-TNCPLCRRRIDQVVRTF 243 (245)
Q Consensus 196 ~~C~iC~~~~~~~-v~~pCgH~~~C~~C~~~~-~~CPiCR~~i~~~~~i~ 243 (245)
..|..|-..---+ |...|||.+ ...|...- .+||-|+....+++..+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsy-HqhC~e~~~~~CP~C~~e~~~~m~l~ 889 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSY-HQHCLEDKEDKCPKCLPELRGVMDLK 889 (933)
T ss_pred eeecccCCccccceeeeecccHH-HHHhhccCcccCCccchhhhhhHHHH
Confidence 4799998765554 445899999 88998743 78999998665554443
No 89
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=70.47 E-value=4 Score=37.70 Aligned_cols=43 Identities=26% Similarity=0.620 Sum_probs=32.3
Q ss_pred ccccceecccc----ccceEEccCCCcccchhhHhcc------CCCcccccccc
Q 025999 194 MPDLCVICLEQ----EYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRID 237 (245)
Q Consensus 194 ~~~~C~iC~~~----~~~~v~~pCgH~~~C~~C~~~~------~~CPiCR~~i~ 237 (245)
..--|-.|-+. +.+.-.+||.|.| -..|...+ ..||-||.-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 44578888763 4445678999999 89999855 58999995444
No 90
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=70.10 E-value=11 Score=28.82 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=25.0
Q ss_pred cccceeccccc-----cceEEccCCCcccchhhHhcc-----CCCccccc
Q 025999 195 PDLCVICLEQE-----YNAVFVPCGHMCCCIICSWHL-----TNCPLCRR 234 (245)
Q Consensus 195 ~~~C~iC~~~~-----~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~ 234 (245)
...|.+|.... +..+-..|+|.+ |..|.... -.|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHH
Confidence 44899998753 224456788888 88887654 25888864
No 91
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.80 E-value=34 Score=22.92 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025999 145 IHYILQRKRRWELHRRVLAAAA 166 (245)
Q Consensus 145 ~r~~~~~r~~~~~~~~~~~~~~ 166 (245)
.++++.+++-+++++++.+..+
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445455555555655554433
No 92
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=66.07 E-value=2.9 Score=37.12 Aligned_cols=46 Identities=20% Similarity=0.512 Sum_probs=24.1
Q ss_pred cccceeccccccceEEccC---C--CcccchhhHhcc----CCCccccccccceee
Q 025999 195 PDLCVICLEQEYNAVFVPC---G--HMCCCIICSWHL----TNCPLCRRRIDQVVR 241 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pC---g--H~~~C~~C~~~~----~~CPiCR~~i~~~~~ 241 (245)
...|+||-..+.-.++..= | |+. |.-|...| ..||.|-..-.....
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~ 226 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLE 226 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCccee
Confidence 4689999999998888764 3 555 99999888 489999866544443
No 93
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.17 E-value=3.1 Score=31.24 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=20.3
Q ss_pred ccCCCcccchhhHhcc----CCCcccccc
Q 025999 211 VPCGHMCCCIICSWHL----TNCPLCRRR 235 (245)
Q Consensus 211 ~pCgH~~~C~~C~~~~----~~CPiCR~~ 235 (245)
-.|.|.| -.-|+.+| ..||+|.+.
T Consensus 79 G~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 4899999 78999988 479999764
No 94
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=63.12 E-value=2.9 Score=37.49 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=36.5
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc-----CCCcccccccccee
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVV 240 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~~ 240 (245)
.-.|++|+.+......++|+|-.+|-.|.... +.|++|-..+....
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~ 186 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAG 186 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhh
Confidence 34799999999999999999999999985443 45999966554443
No 95
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=62.42 E-value=4.5 Score=40.76 Aligned_cols=44 Identities=20% Similarity=0.460 Sum_probs=33.6
Q ss_pred ccccceeccc--cccceEEccCCCcc----cchhhHhcc------CCCcccccccc
Q 025999 194 MPDLCVICLE--QEYNAVFVPCGHMC----CCIICSWHL------TNCPLCRRRID 237 (245)
Q Consensus 194 ~~~~C~iC~~--~~~~~v~~pCgH~~----~C~~C~~~~------~~CPiCR~~i~ 237 (245)
++..|-||.. .+-++.|.||.+.- ...+|...| ++|-+|..++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 3458999985 46778999998653 367888887 58999987764
No 96
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.41 E-value=4.6 Score=35.18 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=32.1
Q ss_pred ccccceecc----ccccceEEccCCCcccchhhHhcc--CCCccccccccc
Q 025999 194 MPDLCVICL----EQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~----~~~~~~v~~pCgH~~~C~~C~~~~--~~CPiCR~~i~~ 238 (245)
....|+|-- ...+.+++.+|||++ =+.-..++ ..|++|.+.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~-SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVF-SERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceec-cHHHHHHhhhccccccCCcccc
Confidence 455888875 345667888999999 45555555 589999987754
No 97
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=60.80 E-value=62 Score=23.54 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 132 LTIFGTFLIAKRAIHYILQRKRRWELHR 159 (245)
Q Consensus 132 ~~~~g~~ll~~~~~r~~~~~r~~~~~~~ 159 (245)
++.+.+++++|.++|-++-+++-.+++.
T Consensus 10 ~~~v~~~i~~y~~~k~~ka~~~~~kL~~ 37 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKAKKQNAKLQK 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666665554444333433
No 98
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=59.08 E-value=30 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025999 132 LTIFGTFLIAKRAIHYILQRK 152 (245)
Q Consensus 132 ~~~~g~~ll~~~~~r~~~~~r 152 (245)
.+++|++++....+|.|+.|+
T Consensus 17 Vglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566677667777775544
No 99
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=57.81 E-value=5.2 Score=36.41 Aligned_cols=25 Identities=24% Similarity=0.733 Sum_probs=16.1
Q ss_pred ccccceeccccccceEEccCCCcccchhh
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIIC 222 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C 222 (245)
.+.+|+||-+..+-..+ |-+- |++|
T Consensus 14 l~ElCPVCGDkVSGYHY---GLLT-CESC 38 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGYHY---GLLT-CESC 38 (475)
T ss_pred cccccccccCcccccee---eeee-hhhh
Confidence 34489999998876543 2222 5666
No 100
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.75 E-value=5.2 Score=36.93 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=29.6
Q ss_pred ccceeccccccc---eEEccCCCcccchhhHhcc-------CCCccccccc
Q 025999 196 DLCVICLEQEYN---AVFVPCGHMCCCIICSWHL-------TNCPLCRRRI 236 (245)
Q Consensus 196 ~~C~iC~~~~~~---~v~~pCgH~~~C~~C~~~~-------~~CPiCR~~i 236 (245)
..|+|=.+.-.+ ++-+.|||+. |.+-+.++ =+||.|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence 478887765433 6788999998 88888776 1799996543
No 101
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.05 E-value=4.9 Score=40.35 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=29.1
Q ss_pred ccceecccc----ccceEEccCCCcccchhhHhcc----------CCCccccccccce
Q 025999 196 DLCVICLEQ----EYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQV 239 (245)
Q Consensus 196 ~~C~iC~~~----~~~~v~~pCgH~~~C~~C~~~~----------~~CPiCR~~i~~~ 239 (245)
..|.+|+.. ...+.+-.|+|.+ |..|+..+ ..|++|..-|...
T Consensus 100 ~~C~~E~S~~~ds~~i~P~~~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 100 PVCEKEHSPDVDSSNICPVQTHVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred chhheecCCcccccCcCchhhhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 356666666 2333344599999 99999876 3688887666543
No 102
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.02 E-value=6.1 Score=34.32 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=28.1
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL 226 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~ 226 (245)
.-+.|..|+...+++++.|=||+| |..|+...
T Consensus 42 ~FdcCsLtLqPc~dPvit~~Gylf-drEaILe~ 73 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLF-DREAILEY 73 (303)
T ss_pred CcceeeeecccccCCccCCCCeee-eHHHHHHH
Confidence 345899999999999999999999 99998653
No 103
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=54.96 E-value=60 Score=21.57 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 123 RWYKYASFGLTIFGTFLIAKRAIHYILQRKRRW 155 (245)
Q Consensus 123 r~~~~~~i~~~~~g~~ll~~~~~r~~~~~r~~~ 155 (245)
|..-+..+++++.+..++.+..+.++...|+++
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~~ 47 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFKYNRRRR 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566777777777777777776554443
No 104
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=53.69 E-value=3.3 Score=28.88 Aligned_cols=38 Identities=24% Similarity=0.575 Sum_probs=19.1
Q ss_pred cceeccccccceEEccCCCcccchhhHhcc---CCCccccccccce
Q 025999 197 LCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQV 239 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~---~~CPiCR~~i~~~ 239 (245)
.|+.|...-... =||.. |..|.... ..||-|.++++.+
T Consensus 3 ~CP~C~~~L~~~----~~~~~-C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 3 TCPKCQQELEWQ----GGHYH-CEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp B-SSS-SBEEEE----TTEEE-ETTT--EEEEEEE-TTT-SB-EEE
T ss_pred cCCCCCCccEEe----CCEEE-CccccccceecccCCCcccHHHHH
Confidence 688887542111 14554 88887766 4788888887654
No 105
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=51.54 E-value=7.7 Score=34.94 Aligned_cols=41 Identities=20% Similarity=0.522 Sum_probs=29.7
Q ss_pred ccccceeccccccceEEc---cCCCcc-cchhhHhcc----CCCccccc
Q 025999 194 MPDLCVICLEQEYNAVFV---PCGHMC-CCIICSWHL----TNCPLCRR 234 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~---pCgH~~-~C~~C~~~~----~~CPiCR~ 234 (245)
....|+||-..+.-.++. .=|+++ .|.-|...| .+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 456999999999766542 234332 399999888 48999986
No 106
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.53 E-value=7.6 Score=30.12 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=15.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 115 IENLGKWARWYKYASFGLTIFGTFLIAKRAI 145 (245)
Q Consensus 115 i~~l~~~~r~~~~~~i~~~~~g~~ll~~~~~ 145 (245)
..++...+..+..+++++|++|++++....+
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccceeehhHHHHHHHHHHHHHHHHHH
Confidence 3344444545555666666666655544433
No 107
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=51.50 E-value=8.6 Score=28.17 Aligned_cols=37 Identities=24% Similarity=0.650 Sum_probs=28.4
Q ss_pred ccceeccccccceEEccCCCcccchhhHhccCCCccccccccc
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQ 238 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~ 238 (245)
..|.+|-..... =||-+ |..|+-.--.|.+|-..|..
T Consensus 45 ~~C~~CK~~v~q-----~g~~Y-Cq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 45 SKCKICKTKVHQ-----PGAKY-CQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred cccccccccccc-----CCCcc-ChhhhcccCcccccCCeecc
Confidence 479999854332 27777 99999888899999988843
No 108
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=50.81 E-value=5.7 Score=35.72 Aligned_cols=40 Identities=20% Similarity=0.574 Sum_probs=29.8
Q ss_pred cccceeccccccceEEcc----CC--CcccchhhHhcc----CCCcccccc
Q 025999 195 PDLCVICLEQEYNAVFVP----CG--HMCCCIICSWHL----TNCPLCRRR 235 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~p----Cg--H~~~C~~C~~~~----~~CPiCR~~ 235 (245)
...|+||-..+.-.++.. =| |+. |.-|...| .+||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~-CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLS-CSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEE-cCCCCCcccccCccCCCCCCC
Confidence 458999999997655433 34 444 99999888 489999864
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.34 E-value=4.9 Score=37.30 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=21.1
Q ss_pred cccceecc-ccccc---eEEccCCCcccchhhHhcc
Q 025999 195 PDLCVICL-EQEYN---AVFVPCGHMCCCIICSWHL 226 (245)
Q Consensus 195 ~~~C~iC~-~~~~~---~v~~pCgH~~~C~~C~~~~ 226 (245)
...|.||+ +.+.. ....-|+|.| |..|..+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~~ 180 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQH 180 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHHH
Confidence 44799999 32222 1235799999 99998653
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.91 E-value=5.9 Score=35.23 Aligned_cols=23 Identities=30% Similarity=0.979 Sum_probs=16.9
Q ss_pred CCCcccchhhHhcc-----------------CCCccccccc
Q 025999 213 CGHMCCCIICSWHL-----------------TNCPLCRRRI 236 (245)
Q Consensus 213 CgH~~~C~~C~~~~-----------------~~CPiCR~~i 236 (245)
|.-+. |.+|..++ ..||.||+.+
T Consensus 325 crp~w-c~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLW-CRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHH-HHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 44555 88887765 3799999875
No 111
>PRK00523 hypothetical protein; Provisional
Probab=48.43 E-value=71 Score=22.40 Aligned_cols=28 Identities=11% Similarity=-0.086 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 123 RWYKYASFGLTIFGTFLIAKRAIHYILQ 150 (245)
Q Consensus 123 r~~~~~~i~~~~~g~~ll~~~~~r~~~~ 150 (245)
..|..+.++.+++|++.-++.+.+++..
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666777667777766644
No 112
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=48.39 E-value=7.7 Score=24.66 Aligned_cols=35 Identities=31% Similarity=0.708 Sum_probs=20.2
Q ss_pred ceeccccccc--eEEccCCCcc----cchhhHhcc------CCCccc
Q 025999 198 CVICLEQEYN--AVFVPCGHMC----CCIICSWHL------TNCPLC 232 (245)
Q Consensus 198 C~iC~~~~~~--~v~~pCgH~~----~C~~C~~~~------~~CPiC 232 (245)
|-||++.... ..+.||+..- .-..|+.+| .+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6678776433 5677987432 356788877 468877
No 113
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=48.23 E-value=8.6 Score=24.80 Aligned_cols=38 Identities=24% Similarity=0.560 Sum_probs=17.3
Q ss_pred cceeccccccceEE-ccCCCcccchhhHhcc--------CCCcccccc
Q 025999 197 LCVICLEQEYNAVF-VPCGHMCCCIICSWHL--------TNCPLCRRR 235 (245)
Q Consensus 197 ~C~iC~~~~~~~v~-~pCgH~~~C~~C~~~~--------~~CPiCR~~ 235 (245)
.|++...+...++= ..|.|.- |.+=..=+ -.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 58888877777654 4799997 65432111 379999864
No 114
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=48.16 E-value=10 Score=34.21 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=21.3
Q ss_pred cceEEccCCCcccc--hhhHhcc----CCCccccccccceeec
Q 025999 206 YNAVFVPCGHMCCC--IICSWHL----TNCPLCRRRIDQVVRT 242 (245)
Q Consensus 206 ~~~v~~pCgH~~~C--~~C~~~~----~~CPiCR~~i~~~~~i 242 (245)
.-.+++.|||+--. +.|...- ..||+||. +..++++
T Consensus 315 QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~-~gp~V~L 356 (429)
T KOG3842|consen 315 QPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRV-VGPYVPL 356 (429)
T ss_pred CCeEEEeccccccccccccccccCcccCcCCeeee-ecceeee
Confidence 34688999988522 2232222 58999975 3334443
No 115
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=47.61 E-value=22 Score=30.35 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCCCCeEEecCChHHHHHHhhhhhHHHHHHHHHHHH
Q 025999 98 RPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTI 134 (245)
Q Consensus 98 ~P~~g~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~ 134 (245)
++.+.||+-....+++.+......++.|+++++++++
T Consensus 14 ~~~~~~y~~a~~~weer~~~~~~~~~~w~~va~~~l~ 50 (228)
T PRK13872 14 PEPETPYQRAAQVWDERIGSARVQARNWRLMAFGCLA 50 (228)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888888888888887777767644544333
No 116
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=47.53 E-value=92 Score=24.53 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=16.4
Q ss_pred cCChHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 025999 108 PKTIDELIENLGKWARWYKYASFGLTIFGT 137 (245)
Q Consensus 108 ~~s~~~Li~~l~~~~r~~~~~~i~~~~~g~ 137 (245)
.....+++..+......+.+.+++.+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~G~~i~~~v~~ 132 (154)
T PF09835_consen 103 LMHWSDLLESLWEFGLPFLLGSLILGIVLG 132 (154)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655555555555555555555443
No 117
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.66 E-value=8.3 Score=33.24 Aligned_cols=19 Identities=32% Similarity=0.961 Sum_probs=15.7
Q ss_pred cchhhHhcc----CCCccccccc
Q 025999 218 CCIICSWHL----TNCPLCRRRI 236 (245)
Q Consensus 218 ~C~~C~~~~----~~CPiCR~~i 236 (245)
.|.+|-+++ +.||+|++.-
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccc
Confidence 599998887 7999998653
No 118
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.56 E-value=12 Score=32.05 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=31.3
Q ss_pred cceecccc--ccceEEccCCCcccchhhHhcc------------CCCccccccccc
Q 025999 197 LCVICLEQ--EYNAVFVPCGHMCCCIICSWHL------------TNCPLCRRRIDQ 238 (245)
Q Consensus 197 ~C~iC~~~--~~~~v~~pCgH~~~C~~C~~~~------------~~CPiCR~~i~~ 238 (245)
-|..|-.. ..+.+-+.|-|+| -+.|...+ -.||.|.+.|-.
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlf-HW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLF-HWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCceeCCccccCcceeehhhhhH-HHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 57777754 4567778999999 89998654 269999988744
No 119
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=44.72 E-value=25 Score=29.78 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.9
Q ss_pred CCCCCCeEEecCChHHHHHHhhhhhHHHHHHHHHHHHH
Q 025999 98 RPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIF 135 (245)
Q Consensus 98 ~P~~g~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~ 135 (245)
++...||+-....+++.+......++.|++++++.+++
T Consensus 5 ~~~~~py~~a~~~w~er~g~~~~~~~~W~~~a~~~l~~ 42 (220)
T PRK13836 5 TPPDNPYLAARQEWNERYGSYVKAAAAWRIVGILGLTM 42 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888889999988888889998877644443
No 120
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=44.55 E-value=6.3 Score=34.88 Aligned_cols=45 Identities=29% Similarity=0.610 Sum_probs=32.6
Q ss_pred cceecccc----ccceEEccCCCcccchhhHhcc----CCCccccccccceeecc
Q 025999 197 LCVICLEQ----EYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTF 243 (245)
Q Consensus 197 ~C~iC~~~----~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~i~ 243 (245)
-|++|.+. ...+.+++|||.-- ..|...+ -.||+|-. +.....+|
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 49999864 34567789999984 7787665 48999988 65555444
No 121
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=43.96 E-value=13 Score=21.72 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=9.9
Q ss_pred CCCcccccccccee
Q 025999 227 TNCPLCRRRIDQVV 240 (245)
Q Consensus 227 ~~CPiCR~~i~~~~ 240 (245)
..||+|..+-..+.
T Consensus 18 ~~CP~Cg~~~~~F~ 31 (33)
T cd00350 18 WVCPVCGAPKDKFE 31 (33)
T ss_pred CcCcCCCCcHHHcE
Confidence 48999987655544
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.26 E-value=16 Score=33.02 Aligned_cols=46 Identities=33% Similarity=0.895 Sum_probs=33.0
Q ss_pred cccceeccccc--cceEEc--cCCCcccchhhHhcc----CCCccccccccceee
Q 025999 195 PDLCVICLEQE--YNAVFV--PCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 241 (245)
Q Consensus 195 ~~~C~iC~~~~--~~~v~~--pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~ 241 (245)
+..|++|.+.. .+..++ ||+|.. |..|.... ..||.||.+...-..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~-~l~~~~t~~~~~~~~~~~rk~~~~~t~ 302 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRL-CLFCHKTISDGDGRCPGCRKPYERNTK 302 (327)
T ss_pred CCCCCCCCCcccccccccccccccccc-hhhhhhcccccCCCCCccCCccccCcc
Confidence 46899999843 223344 688884 99998776 589999987766443
No 123
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=42.46 E-value=73 Score=25.04 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 025999 136 GTFLIAKRAIHYILQR 151 (245)
Q Consensus 136 g~~ll~~~~~r~~~~~ 151 (245)
+++++.+..+|++++.
T Consensus 33 ~~~~~~~~~~r~~~~~ 48 (146)
T PF14316_consen 33 LLILLLWRLWRRWRRN 48 (146)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3334445555555443
No 124
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=42.13 E-value=9.2 Score=24.87 Aligned_cols=10 Identities=60% Similarity=1.434 Sum_probs=3.1
Q ss_pred CCcccccccc
Q 025999 228 NCPLCRRRID 237 (245)
Q Consensus 228 ~CPiCR~~i~ 237 (245)
.||+|.++++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 3555555543
No 125
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=41.77 E-value=41 Score=24.12 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025999 145 IHYILQRKRRWELHRRV 161 (245)
Q Consensus 145 ~r~~~~~r~~~~~~~~~ 161 (245)
++.|++.++|++..+.+
T Consensus 27 ~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp ------------CHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33444444444444433
No 126
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=41.32 E-value=57 Score=28.20 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 126 KYASFGLTIFGTFLIAKRAIHYILQRKRR 154 (245)
Q Consensus 126 ~~~~i~~~~~g~~ll~~~~~r~~~~~r~~ 154 (245)
-|++.++.++|.+++++.++.|++-+|.+
T Consensus 194 ~wla~~Lm~~G~fI~irsi~dY~rVKR~E 222 (233)
T PF10176_consen 194 PWLAYILMAFGWFIFIRSIIDYWRVKRME 222 (233)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788899999998888888665544
No 127
>PRK01844 hypothetical protein; Provisional
Probab=39.87 E-value=1e+02 Score=21.65 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 127 YASFGLTIFGTFLIAKRAIHYILQ 150 (245)
Q Consensus 127 ~~~i~~~~~g~~ll~~~~~r~~~~ 150 (245)
++.++.+++|+++-++.+.+++.+
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666643
No 128
>PLN02189 cellulose synthase
Probab=39.78 E-value=17 Score=37.89 Aligned_cols=43 Identities=30% Similarity=0.695 Sum_probs=29.6
Q ss_pred cccceecccccc----ceEEccCC---CcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEY----NAVFVPCG---HMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~----~~v~~pCg---H~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|.||-+... --.|+.|. -- .|..|+.-- +.||.|++...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 448999998732 22556554 33 499998533 589999988763
No 129
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=39.63 E-value=18 Score=23.57 Aligned_cols=21 Identities=43% Similarity=1.015 Sum_probs=12.6
Q ss_pred cCCCcccchhhHhc----cCCCcccc
Q 025999 212 PCGHMCCCIICSWH----LTNCPLCR 233 (245)
Q Consensus 212 pCgH~~~C~~C~~~----~~~CPiCR 233 (245)
.|++.| |.+|..= +-.||-|-
T Consensus 26 ~C~~~F-C~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHF-CIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B--HHHHHTTTTTS-SSSTT-
T ss_pred CCCCcc-ccCcChhhhccccCCcCCC
Confidence 688888 9999643 46899984
No 130
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=38.37 E-value=6 Score=21.95 Aligned_cols=9 Identities=44% Similarity=1.409 Sum_probs=6.9
Q ss_pred CCccccccc
Q 025999 228 NCPLCRRRI 236 (245)
Q Consensus 228 ~CPiCR~~i 236 (245)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588887776
No 131
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=38.10 E-value=54 Score=21.54 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=24.6
Q ss_pred eeecccCCCceeEEeEeEEecCCCCeEEeCCC
Q 025999 69 RIERLLPTGTSLTVVGEAVKDDIGTVRIQRPH 100 (245)
Q Consensus 69 ~~E~~L~~G~~lt~vGe~~~d~~g~~~iq~P~ 100 (245)
.....+++|+.+.+.|.+..- .|.+.|..|.
T Consensus 41 ~~~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~ 71 (75)
T cd04488 41 YLKKQLPPGTRVRVSGKVKRF-RGGLQIVHPE 71 (75)
T ss_pred HHHhcCCCCCEEEEEEEEeec-CCeeEEeCCc
Confidence 346679999999999996543 6788888886
No 132
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.61 E-value=12 Score=35.28 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=25.7
Q ss_pred cccceeccccccc-eEEccCCCcccchhhHhcc
Q 025999 195 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL 226 (245)
Q Consensus 195 ~~~C~iC~~~~~~-~v~~pCgH~~~C~~C~~~~ 226 (245)
...|-||.+.... ++.++|||.| |..|....
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~y 101 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPF-CPPCWTGY 101 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHH-HHHHHHHH
Confidence 3479999998885 7788999999 99997653
No 133
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=37.48 E-value=14 Score=24.05 Aligned_cols=15 Identities=20% Similarity=0.705 Sum_probs=11.5
Q ss_pred CCCccccccccceee
Q 025999 227 TNCPLCRRRIDQVVR 241 (245)
Q Consensus 227 ~~CPiCR~~i~~~~~ 241 (245)
+.|++|++||....-
T Consensus 2 ~iCvvCK~Pi~~al~ 16 (53)
T PHA02610 2 KICVVCKQPIEKALV 16 (53)
T ss_pred ceeeeeCCchhhceE
Confidence 469999999977543
No 134
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=37.06 E-value=8.1 Score=40.86 Aligned_cols=42 Identities=29% Similarity=0.669 Sum_probs=32.5
Q ss_pred cccceecccccc-ceEEccCCCcccchhhHhcc----CCCcccccccc
Q 025999 195 PDLCVICLEQEY-NAVFVPCGHMCCCIICSWHL----TNCPLCRRRID 237 (245)
Q Consensus 195 ~~~C~iC~~~~~-~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~ 237 (245)
...|.+|.+--+ ...+.-|||.+ |..|...| ..||+|...+.
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhhh
Confidence 348999999877 44455899999 77998887 58999975443
No 135
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=36.73 E-value=74 Score=23.72 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 025999 123 RWYKYASFGL 132 (245)
Q Consensus 123 r~~~~~~i~~ 132 (245)
.||+|+.+++
T Consensus 21 ~w~FWlv~~l 30 (102)
T PF11669_consen 21 LWYFWLVWVL 30 (102)
T ss_pred HHHHHHHHHH
Confidence 3556654344
No 136
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=36.59 E-value=9.5 Score=21.99 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=11.0
Q ss_pred CcccchhhHhcc--------CCCcccccc
Q 025999 215 HMCCCIICSWHL--------TNCPLCRRR 235 (245)
Q Consensus 215 H~~~C~~C~~~~--------~~CPiCR~~ 235 (245)
|.| |..|-..+ ..||.|...
T Consensus 3 ~rf-C~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRF-CGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB--TTT--BEEE-SSSS-EEESSSS-E
T ss_pred Ccc-cCcCCccccCCCCcCEeECCCCcCE
Confidence 677 88887654 368888653
No 137
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.42 E-value=15 Score=26.20 Aligned_cols=43 Identities=30% Similarity=0.641 Sum_probs=16.0
Q ss_pred cccceeccccccc----eEEc---cCCCcccchhhHhc-----cCCCccccccccc
Q 025999 195 PDLCVICLEQEYN----AVFV---PCGHMCCCIICSWH-----LTNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~----~v~~---pCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 238 (245)
...|.||-+..-. -+|+ .|+--+ |..|+.- .+.||.|+++...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCccc
Confidence 4589999875432 1344 455555 8888742 2689999987654
No 138
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.23 E-value=18 Score=20.05 Aligned_cols=7 Identities=43% Similarity=1.175 Sum_probs=3.6
Q ss_pred CCCcccc
Q 025999 227 TNCPLCR 233 (245)
Q Consensus 227 ~~CPiCR 233 (245)
+.||.|.
T Consensus 15 ~~Cp~CG 21 (26)
T PF10571_consen 15 KFCPHCG 21 (26)
T ss_pred CcCCCCC
Confidence 3555554
No 139
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=36.16 E-value=45 Score=28.91 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=24.9
Q ss_pred CCCCCCeEEecCChHHHHHHhhhhhHHHHHHHHHHHH
Q 025999 98 RPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTI 134 (245)
Q Consensus 98 ~P~~g~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~ 134 (245)
++...||+-....+++.+......++.|++++++.++
T Consensus 28 ~~~~~~Y~~a~~~we~r~~~~~~~~~~w~v~a~~~~~ 64 (250)
T PRK13887 28 GETENPYLNARRTWNDHVGGVVSQRQTWQVVGILSLL 64 (250)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445588888888888777777777777764544333
No 140
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.90 E-value=64 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 127 YASFGLTIFGTFLIAKRAIHYILQR 151 (245)
Q Consensus 127 ~~~i~~~~~g~~ll~~~~~r~~~~~ 151 (245)
+..|++++++.+++...++-|+..|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHH
Confidence 5667777765544444455555443
No 141
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=34.11 E-value=19 Score=23.78 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=11.2
Q ss_pred CCCcccccccccee
Q 025999 227 TNCPLCRRRIDQVV 240 (245)
Q Consensus 227 ~~CPiCR~~i~~~~ 240 (245)
.+|.+|+++|....
T Consensus 2 ~~CvVCKqpi~~a~ 15 (54)
T PF10886_consen 2 EICVVCKQPIDDAL 15 (54)
T ss_pred CeeeeeCCccCcce
Confidence 47999999998753
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.42 E-value=2.4e+02 Score=28.80 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=23.8
Q ss_pred ccceeccccccceEEc--c--CCCcccchhhH--------hccCCCccccccccce
Q 025999 196 DLCVICLEQEYNAVFV--P--CGHMCCCIICS--------WHLTNCPLCRRRIDQV 239 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~--p--CgH~~~C~~C~--------~~~~~CPiCR~~i~~~ 239 (245)
..|.-|......++.. | =.-...|..|- .....||+|-..+...
T Consensus 1132 ~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~~~~ 1187 (1189)
T KOG2041|consen 1132 LQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSMESFR 1187 (1189)
T ss_pred CCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccChhhcc
Confidence 3788887766554331 0 00122344443 2235799998876543
No 143
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.03 E-value=19 Score=21.25 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.2
Q ss_pred CCCcccccccccee
Q 025999 227 TNCPLCRRRIDQVV 240 (245)
Q Consensus 227 ~~CPiCR~~i~~~~ 240 (245)
..||+|..+-..+.
T Consensus 19 ~~CP~Cg~~~~~F~ 32 (34)
T cd00729 19 EKCPICGAPKEKFE 32 (34)
T ss_pred CcCcCCCCchHHcE
Confidence 58999988755544
No 144
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=32.36 E-value=19 Score=36.64 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=29.5
Q ss_pred cccceeccccccce-EEc---cCCCcccchhhHhcc-----------CCCcccccc
Q 025999 195 PDLCVICLEQEYNA-VFV---PCGHMCCCIICSWHL-----------TNCPLCRRR 235 (245)
Q Consensus 195 ~~~C~iC~~~~~~~-v~~---pCgH~~~C~~C~~~~-----------~~CPiCR~~ 235 (245)
...|.||++..... -++ .|-|+| -..|+..| .+||-|...
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVF-Hl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVF-HLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhh-hHHHHHHHHHHhhhccCccccCCcccch
Confidence 34899999976442 222 577999 78899888 379999743
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.25 E-value=20 Score=36.11 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=12.4
Q ss_pred cCCCcccchhhHhcc
Q 025999 212 PCGHMCCCIICSWHL 226 (245)
Q Consensus 212 pCgH~~~C~~C~~~~ 226 (245)
.|||++.|..|...+
T Consensus 440 ~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 440 DCGYIAECPNCDSPL 454 (730)
T ss_pred cCCCcccCCCCCcce
Confidence 789999999997665
No 146
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=31.80 E-value=15 Score=23.01 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=13.4
Q ss_pred ccchhhHhcc--------CCCcccccccc
Q 025999 217 CCCIICSWHL--------TNCPLCRRRID 237 (245)
Q Consensus 217 ~~C~~C~~~~--------~~CPiCR~~i~ 237 (245)
+.|..|-..+ .+||.|..++.
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 4466664433 47999987765
No 147
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=31.53 E-value=91 Score=22.38 Aligned_cols=22 Identities=14% Similarity=0.068 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025999 141 AKRAIHYILQRKRRWELHRRVL 162 (245)
Q Consensus 141 ~~~~~r~~~~~r~~~~~~~~~~ 162 (245)
.++.||..+++|+-.++-+++.
T Consensus 26 v~ieYrk~~rqrkId~li~RIr 47 (81)
T PF00558_consen 26 VYIEYRKIKRQRKIDRLIERIR 47 (81)
T ss_dssp H------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444444444
No 148
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=30.66 E-value=6 Score=25.88 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=2.4
Q ss_pred ccceecc
Q 025999 196 DLCVICL 202 (245)
Q Consensus 196 ~~C~iC~ 202 (245)
..|++|.
T Consensus 25 atCP~C~ 31 (54)
T PF09237_consen 25 ATCPICG 31 (54)
T ss_dssp EE-TTT-
T ss_pred CCCCcch
Confidence 3455554
No 149
>PHA02862 5L protein; Provisional
Probab=29.78 E-value=37 Score=27.19 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=27.1
Q ss_pred cccceeccccccceEE-ccCC--CcccchhhHhcc------CCCcccccccc
Q 025999 195 PDLCVICLEQEYNAVF-VPCG--HMCCCIICSWHL------TNCPLCRRRID 237 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~-~pCg--H~~~C~~C~~~~------~~CPiCR~~i~ 237 (245)
.+.|-||++...+.+- =.|. -.+.-.+|..+| ..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3479999998755421 0000 022357898887 47999998764
No 150
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.59 E-value=16 Score=29.57 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=19.1
Q ss_pred CcccchhhHhcc-CCCccccccccce
Q 025999 215 HMCCCIICSWHL-TNCPLCRRRIDQV 239 (245)
Q Consensus 215 H~~~C~~C~~~~-~~CPiCR~~i~~~ 239 (245)
+-| |..|-... ..||.|..+|...
T Consensus 28 ~~f-C~kCG~~tI~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 28 EKF-CSKCGAKTITSCPNCSTPIRGD 52 (158)
T ss_pred HHH-HHHhhHHHHHHCcCCCCCCCCc
Confidence 455 99997665 7999999999763
No 151
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=28.88 E-value=35 Score=31.74 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCeEEeCCC----CC--CeEEecCChHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 91 IGTVRIQRPH----KG--PFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHY 147 (245)
Q Consensus 91 ~g~~~iq~P~----~g--~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~g~~ll~~~~~r~ 147 (245)
.-+.+++++. .| ||+..-.-...-+ ....+++.++|.++|..|+++.++|.
T Consensus 233 ~d~arv~c~~~~~~yg~~pf~sff~~~~~~l------s~f~~~~~~~Fs~lg~~l~fF~lYKf 289 (420)
T PTZ00473 233 IDTARVQCKVCEREYGSNPFFSFFANYKPDL------SSFGKVLVISFSALGGSLSLFILYKF 289 (420)
T ss_pred CCCceecccchhhhcCCCcceeeeccCCCcc------CccceeehhhHHHHHHHHHHHHHHhc
Confidence 3456666654 23 6654433222212 23444566788889999998888874
No 152
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=28.75 E-value=2.3e+02 Score=20.57 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=23.9
Q ss_pred eEEeCCCCCCeEEecCChHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 94 VRIQRPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHYILQRK 152 (245)
Q Consensus 94 ~~iq~P~~g~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~g~~ll~~~~~r~~~~~r 152 (245)
+.+++|+.| ...+.=+.++...... ..+.++++.+.+.+......+..|.+-|
T Consensus 2 P~~e~Ps~g----~~~~~~~~i~~y~~d~--~~l~gLv~~a~afi~Va~~~i~~y~eir 54 (87)
T PF11190_consen 2 PTVEPPSSG----GGGGIMETIKGYAKDG--VLLLGLVLAAAAFIVVAKAAISTYNEIR 54 (87)
T ss_pred CCCCCCCCC----CCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788877 3333333333222221 1133333444444444555565565544
No 153
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=28.39 E-value=20 Score=26.35 Aligned_cols=36 Identities=25% Similarity=0.613 Sum_probs=28.1
Q ss_pred cccceeccccccceEEccCCCcccchhhHhccCCCcccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRR 235 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~ 235 (245)
+..|+.|......-. -|.. |..|+.....|+-|..+
T Consensus 55 p~kC~~C~qktVk~A----Yh~i-C~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHA----YHVI-CDPCAKELKVCAKCGKP 90 (92)
T ss_pred CccccccccchHHHH----HHHH-HHHHHHhhccCcccCCC
Confidence 447999997655444 3776 99999999999999764
No 154
>PF05439 JTB: Jumping translocation breakpoint protein (JTB); InterPro: IPR008657 This family contains several jumping translocation breakpoint proteins or JTBs. Jumping translocation (JT) is an unbalanced translocation that comprises amplified chromosomal segments jumping to various telomeres. JTB, located at 1q21, has been found to fuse with the telomeric repeats of acceptor telomeres in a case of JT. hJTB (Homo sapiens JTB) encodes a transmembrane protein that is highly conserved among divergent eukaryotic species. JT results in a hJTB truncation, which potentially produces an hJTB product devoid of the transmembrane domain. hJTB is located in a gene-rich region at 1q21, called EDC (Epidermal Differentiation Complex) []. JTB has also been implicated in prostatic carcinomas [].; GO: 0016021 integral to membrane; PDB: 2KJX_A.
Probab=28.05 E-value=20 Score=27.51 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=0.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 120 KWARWYKYASFGLTIFGTFLIAKRAIHYILQRKRRWELH 158 (245)
Q Consensus 120 ~~~r~~~~~~i~~~~~g~~ll~~~~~r~~~~~r~~~~~~ 158 (245)
....+|++.++.+++.-+..++..+.+..+.++...+++
T Consensus 73 e~~~Fw~Fe~~~l~i~l~s~~~v~~R~r~Ldr~~~~rv~ 111 (114)
T PF05439_consen 73 EERNFWKFEGFMLVIGLLSYLVVVLRQRQLDRRAYERVQ 111 (114)
T ss_dssp S--------------------------------------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577776655555444444555555555555444433
No 155
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=27.85 E-value=1.4e+02 Score=21.14 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=18.6
Q ss_pred eecccCCCceeEEeEeEEecCCCCeEEe
Q 025999 70 IERLLPTGTSLTVVGEAVKDDIGTVRIQ 97 (245)
Q Consensus 70 ~E~~L~~G~~lt~vGe~~~d~~g~~~iq 97 (245)
....+++|+.+-+.|.+ ..-.|.+.|.
T Consensus 44 ~~~~~~~g~~v~v~G~v-~~~~g~~ql~ 70 (95)
T cd04478 44 EVEPIEEGTYVRVFGNL-KSFQGKKSIM 70 (95)
T ss_pred cccccccCCEEEEEEEE-cccCCeeEEE
Confidence 35568999999999995 4334555444
No 156
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.80 E-value=23 Score=30.52 Aligned_cols=19 Identities=32% Similarity=1.051 Sum_probs=15.1
Q ss_pred cchhhHhcc----CCCccccccc
Q 025999 218 CCIICSWHL----TNCPLCRRRI 236 (245)
Q Consensus 218 ~C~~C~~~~----~~CPiCR~~i 236 (245)
.|.+|-+++ +.||+|+..-
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcc
Confidence 488998776 7999998654
No 157
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=27.68 E-value=25 Score=28.81 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=15.8
Q ss_pred cCCCcccchhhHhccCCCccccccccce
Q 025999 212 PCGHMCCCIICSWHLTNCPLCRRRIDQV 239 (245)
Q Consensus 212 pCgH~~~C~~C~~~~~~CPiCR~~i~~~ 239 (245)
-|||.+ .. ..-..||+|..+-..+
T Consensus 139 vCGy~~--~g--e~P~~CPiCga~k~~F 162 (166)
T COG1592 139 VCGYTH--EG--EAPEVCPICGAPKEKF 162 (166)
T ss_pred CCCCcc--cC--CCCCcCCCCCChHHHh
Confidence 358875 34 4445899998775554
No 158
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.53 E-value=27 Score=32.94 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=12.1
Q ss_pred eEEccCCCcccchhhHhc
Q 025999 208 AVFVPCGHMCCCIICSWH 225 (245)
Q Consensus 208 ~v~~pCgH~~~C~~C~~~ 225 (245)
.+.=+|||.| |+.|...
T Consensus 179 ~v~C~~g~~F-C~~C~~~ 195 (444)
T KOG1815|consen 179 EVDCGCGHEF-CFACGEE 195 (444)
T ss_pred ceeCCCCchh-Hhhcccc
Confidence 3444889988 9999544
No 159
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=27.35 E-value=84 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.120 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 025999 122 ARWYKYASFGLTIFGTFLIA 141 (245)
Q Consensus 122 ~r~~~~~~i~~~~~g~~ll~ 141 (245)
+|.-.+++++++++|+++.+
T Consensus 4 SRsR~la~~aLaAAG~G~AA 23 (137)
T PF12868_consen 4 SRSRDLAEAALAAAGAGYAA 23 (137)
T ss_pred hhHHHHhHHHHHHHHHHHHH
Confidence 34444666667777765443
No 160
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=26.99 E-value=70 Score=21.15 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=22.8
Q ss_pred eeeeecccCCCceeEEeEeEEecCCCCeEEeCC
Q 025999 67 VKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRP 99 (245)
Q Consensus 67 ~~~~E~~L~~G~~lt~vGe~~~d~~g~~~iq~P 99 (245)
+...-+.|++|+.+.+.|.+...+++.+.|..+
T Consensus 38 ~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~ 70 (75)
T PF01336_consen 38 YERFREKLKEGDIVRVRGKVKRYNGGELELIVP 70 (75)
T ss_dssp HHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEE
T ss_pred hhHHhhcCCCCeEEEEEEEEEEECCccEEEEEC
Confidence 334456788999999999987775554666543
No 161
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.94 E-value=24 Score=21.01 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=8.9
Q ss_pred CCCccccccccc
Q 025999 227 TNCPLCRRRIDQ 238 (245)
Q Consensus 227 ~~CPiCR~~i~~ 238 (245)
..||.|...+.+
T Consensus 27 ~~CP~Cg~~~~r 38 (41)
T smart00834 27 ATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCccee
Confidence 579999885544
No 162
>PRK01343 zinc-binding protein; Provisional
Probab=26.81 E-value=33 Score=22.93 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=5.3
Q ss_pred CCcccccccc
Q 025999 228 NCPLCRRRID 237 (245)
Q Consensus 228 ~CPiCR~~i~ 237 (245)
+||+|++++.
T Consensus 11 ~CP~C~k~~~ 20 (57)
T PRK01343 11 PCPECGKPST 20 (57)
T ss_pred cCCCCCCcCc
Confidence 4555555543
No 163
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.48 E-value=27 Score=30.61 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=31.4
Q ss_pred cccccceeccccccc----eEEccCCCcc----cchhhHhcc------------CCCccccccccce
Q 025999 193 VMPDLCVICLEQEYN----AVFVPCGHMC----CCIICSWHL------------TNCPLCRRRIDQV 239 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~----~v~~pCgH~~----~C~~C~~~~------------~~CPiCR~~i~~~ 239 (245)
+.+..|-||+....+ .=+-||..+- ...+|...| ..||.|++....+
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 345589999965544 2345887554 256788776 2699998765443
No 164
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=26.28 E-value=1.7e+02 Score=18.21 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 025999 125 YKYASFGLTIFGTFL 139 (245)
Q Consensus 125 ~~~~~i~~~~~g~~l 139 (245)
+-|.+.+++++.++.
T Consensus 7 yVW~sYg~t~l~l~~ 21 (45)
T TIGR03141 7 YVWLAYGITALVLAG 21 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445565555544433
No 165
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=26.02 E-value=1.9e+02 Score=29.42 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.0
Q ss_pred CeEEecCChHHHH
Q 025999 103 PFYVSPKTIDELI 115 (245)
Q Consensus 103 ~f~ls~~s~~~Li 115 (245)
.||+...++-..+
T Consensus 704 ~y~vG~lP~~~~l 716 (756)
T PRK11114 704 VYYVGHLPWYERL 716 (756)
T ss_pred EEEeccCCHHHHH
Confidence 7899888887555
No 166
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=25.97 E-value=49 Score=21.98 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=21.7
Q ss_pred CeEEecCChHHHHHHhhhhh-HHHHHHHHHHHHHHHHHH
Q 025999 103 PFYVSPKTIDELIENLGKWA-RWYKYASFGLTIFGTFLI 140 (245)
Q Consensus 103 ~f~ls~~s~~~Li~~l~~~~-r~~~~~~i~~~~~g~~ll 140 (245)
+|++.+.....+..++.... +..+..+.+..++|+.++
T Consensus 15 ~~~l~P~~~r~~l~~l~~~p~~~lR~~Gl~~~~~Gl~ll 53 (57)
T PF09838_consen 15 LPFLAPERWRRMLRQLAQLPDRQLRRIGLVSMVIGLVLL 53 (57)
T ss_pred HHHhCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 56777766666665554443 444455555555565544
No 167
>COG3701 TrbF Type IV secretory pathway, TrbF components [Intracellular trafficking and secretion]
Probab=25.59 E-value=35 Score=28.91 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=35.7
Q ss_pred CCCCeEEecCChHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 100 HKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAI 145 (245)
Q Consensus 100 ~~g~f~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~g~~ll~~~~~ 145 (245)
...||.-....+++-+......++.|++.+++..++++++.....|
T Consensus 16 p~tPYq~A~q~WderiGs~r~qA~nwr~~~lg~l~la~~~~gg~vw 61 (228)
T COG3701 16 PETPYQKARQSWDERIGSARVQAQNWRFVGLGGLTLALALAGGLVW 61 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccee
Confidence 3468888888999999999999999999887777766665544443
No 168
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=25.36 E-value=75 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.634 Sum_probs=14.2
Q ss_pred CeEEeCCCCC-CeEEecCChHHHHHHhhhh
Q 025999 93 TVRIQRPHKG-PFYVSPKTIDELIENLGKW 121 (245)
Q Consensus 93 ~~~iq~P~~g-~f~ls~~s~~~Li~~l~~~ 121 (245)
.+.+++ .+| +|++|.-..+.-++.+..+
T Consensus 7 ki~~~~-~~Gl~y~vT~~~s~~~L~k~~~w 35 (45)
T PF12123_consen 7 KIIFQS-KDGLPYFVTDPLSDAELDKFTAW 35 (45)
T ss_dssp EEEE-T--TS-EEEEE----HHHHHHHHHH
T ss_pred EEEEec-CCCcEEEEeCCCCHHHHHHHHHH
Confidence 455554 677 8999987666666555544
No 169
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.13 E-value=24 Score=27.52 Aligned_cols=20 Identities=35% Similarity=0.924 Sum_probs=14.8
Q ss_pred chhhHhc-cCCCccccccccc
Q 025999 219 CIICSWH-LTNCPLCRRRIDQ 238 (245)
Q Consensus 219 C~~C~~~-~~~CPiCR~~i~~ 238 (245)
|..|-.. +..||+|..+|..
T Consensus 31 cskcgeati~qcp~csasirg 51 (160)
T COG4306 31 CSKCGEATITQCPICSASIRG 51 (160)
T ss_pred HhhhchHHHhcCCccCCcccc
Confidence 7777554 3689999888865
No 170
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.89 E-value=27 Score=18.71 Aligned_cols=17 Identities=29% Similarity=0.786 Sum_probs=8.9
Q ss_pred chhhHhcc----CCCcccccc
Q 025999 219 CIICSWHL----TNCPLCRRR 235 (245)
Q Consensus 219 C~~C~~~~----~~CPiCR~~ 235 (245)
|..|-..+ +-||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 44454443 356666554
No 171
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=24.53 E-value=2.4e+02 Score=19.35 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025999 124 WYKYASFGLTIFGTFLIAK 142 (245)
Q Consensus 124 ~~~~~~i~~~~~g~~ll~~ 142 (245)
.|.|++++.+++.++++..
T Consensus 17 fyVWlA~~~tll~l~~l~v 35 (67)
T COG3114 17 FYVWLAVGMTLLPLAVLVV 35 (67)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567777777776655543
No 172
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=24.39 E-value=1.1e+02 Score=29.47 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=19.1
Q ss_pred ccceeccccccc----eEEccCCCcccchhhHh
Q 025999 196 DLCVICLEQEYN----AVFVPCGHMCCCIICSW 224 (245)
Q Consensus 196 ~~C~iC~~~~~~----~v~~pCgH~~~C~~C~~ 224 (245)
..|..|...+.. --.-+||-+| |..|.-
T Consensus 902 ~~cmacq~pf~afrrrhhcrncggif-cg~cs~ 933 (990)
T KOG1819|consen 902 EQCMACQMPFNAFRRRHHCRNCGGIF-CGKCSC 933 (990)
T ss_pred hhhhhccCcHHHHHHhhhhcccCcee-eccccc
Confidence 478888764322 2345899999 898864
No 173
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.18 E-value=2.9e+02 Score=21.43 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=7.2
Q ss_pred CeEEecCChHHHH
Q 025999 103 PFYVSPKTIDELI 115 (245)
Q Consensus 103 ~f~ls~~s~~~Li 115 (245)
+..+-+.+.+.-+
T Consensus 60 ~~~i~pL~e~~Ai 72 (134)
T PF07047_consen 60 PRKIRPLNEEKAI 72 (134)
T ss_pred CCcCCCCCHHHHH
Confidence 4455556665555
No 174
>PLN02400 cellulose synthase
Probab=24.09 E-value=56 Score=34.38 Aligned_cols=43 Identities=30% Similarity=0.650 Sum_probs=29.1
Q ss_pred cccceeccccccce----EEc---cCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNA----VFV---PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~----v~~---pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|.||-+..-.. .|+ .|+--+ |..|+.=- +.||.|++...+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPV-CRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPV-CRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCcc-ccchhheecccCCccCcccCCcccc
Confidence 44899999863221 333 455556 99998422 689999987764
No 175
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=23.96 E-value=44 Score=24.83 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=10.1
Q ss_pred CCCcccccccccee
Q 025999 227 TNCPLCRRRIDQVV 240 (245)
Q Consensus 227 ~~CPiCR~~i~~~~ 240 (245)
..||.|+.++...-
T Consensus 81 ~~Cp~C~spFNp~C 94 (105)
T COG4357 81 GSCPYCQSPFNPGC 94 (105)
T ss_pred CCCCCcCCCCCccc
Confidence 35888888887643
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.74 E-value=36 Score=32.75 Aligned_cols=14 Identities=36% Similarity=1.049 Sum_probs=8.4
Q ss_pred cCCCcccchhhHhc
Q 025999 212 PCGHMCCCIICSWH 225 (245)
Q Consensus 212 pCgH~~~C~~C~~~ 225 (245)
.|||...|..|...
T Consensus 218 ~Cg~~~~C~~C~~~ 231 (505)
T TIGR00595 218 SCGYILCCPNCDVS 231 (505)
T ss_pred hCcCccCCCCCCCc
Confidence 56666666666533
No 177
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=23.48 E-value=42 Score=26.80 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=16.5
Q ss_pred EEccCCCcccchhhHhccCCCcccccc
Q 025999 209 VFVPCGHMCCCIICSWHLTNCPLCRRR 235 (245)
Q Consensus 209 v~~pCgH~~~C~~C~~~~~~CPiCR~~ 235 (245)
+-..|||.. +..=...++.||.|...
T Consensus 114 ~C~~Cg~~~-~~~~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 114 VCENCGHEV-ELTHPERLPPCPKCGHT 139 (146)
T ss_pred ecccCCCEE-EecCCCcCCCCCCCCCC
Confidence 345777776 33334556889999653
No 178
>PLN02436 cellulose synthase A
Probab=23.47 E-value=49 Score=34.75 Aligned_cols=43 Identities=28% Similarity=0.601 Sum_probs=29.3
Q ss_pred cccceeccccccc----eEEccC---CCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYN----AVFVPC---GHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~----~v~~pC---gH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|.||-+..-. -.|+.| +--. |..|+.-- +.||.|+++..+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpv-Cr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPV-CRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCcc-ccchhhhhhhcCCccCcccCCchhh
Confidence 4489999987422 145555 4444 99998533 589999988763
No 179
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=23.34 E-value=43 Score=22.55 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=11.5
Q ss_pred CCCccccccccceee
Q 025999 227 TNCPLCRRRIDQVVR 241 (245)
Q Consensus 227 ~~CPiCR~~i~~~~~ 241 (245)
+.||+|..+...-.+
T Consensus 40 p~CPlC~s~M~~~~r 54 (59)
T PF14169_consen 40 PVCPLCKSPMVSGTR 54 (59)
T ss_pred ccCCCcCCcccccee
Confidence 789999988766544
No 180
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.87 E-value=2.9e+02 Score=21.69 Aligned_cols=8 Identities=50% Similarity=1.041 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 025999 125 YKYASFGL 132 (245)
Q Consensus 125 ~~~~~i~~ 132 (245)
|.+..+++
T Consensus 8 W~~a~igL 15 (138)
T COG3105 8 WEYALIGL 15 (138)
T ss_pred HHHHHHHH
Confidence 44444333
No 181
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=22.78 E-value=1.4e+02 Score=22.90 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025999 130 FGLTIFGTFLIAKRAIHYI 148 (245)
Q Consensus 130 i~~~~~g~~ll~~~~~r~~ 148 (245)
+.++.+|...|..+..|.+
T Consensus 96 L~LaamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 96 LTLAAMGAGALLRRCCRRA 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455556665555544443
No 182
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.34 E-value=1.8e+02 Score=19.88 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 025999 133 TIFGTFLIAKRAIHYI 148 (245)
Q Consensus 133 ~~~g~~ll~~~~~r~~ 148 (245)
.++|+++-++.+.+++
T Consensus 7 li~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 7 LIVGAVIGFFIARKYM 22 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445544455555555
No 183
>PF15050 SCIMP: SCIMP protein
Probab=22.01 E-value=94 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=16.3
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 025999 124 WYKYASFGLTI--FGTFLIAKRAIHYILQRKRRWEL 157 (245)
Q Consensus 124 ~~~~~~i~~~~--~g~~ll~~~~~r~~~~~r~~~~~ 157 (245)
+|.+++++..+ ++++++.+-..|+..++-++|+.
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkwei 43 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEI 43 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccee
Confidence 44455544433 45555655555554443344443
No 184
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.85 E-value=1.6e+02 Score=23.64 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=4.0
Q ss_pred hhhhHHHHHH
Q 025999 119 GKWARWYKYA 128 (245)
Q Consensus 119 ~~~~r~~~~~ 128 (245)
.+.-.|+++.
T Consensus 12 ~~~~~~~~~~ 21 (149)
T PF11694_consen 12 QSQNDYLRYI 21 (149)
T ss_pred hhHHHHHHHH
Confidence 3333344443
No 185
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=21.76 E-value=2.5e+02 Score=18.87 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 124 WYKYASFGLTIFGTFLIAKRAIHYI 148 (245)
Q Consensus 124 ~~~~~~i~~~~~g~~ll~~~~~r~~ 148 (245)
....+++++.++|++++.+-.++|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~ry~ 68 (73)
T PF02656_consen 44 VSKVLGLLLIVLGLLTLIYGIYRYR 68 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667766666666655
No 186
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=55 Score=29.68 Aligned_cols=27 Identities=22% Similarity=0.743 Sum_probs=24.6
Q ss_pred cceeccccccceEEccCC--CcccchhhHh
Q 025999 197 LCVICLEQEYNAVFVPCG--HMCCCIICSW 224 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~pCg--H~~~C~~C~~ 224 (245)
.|..|-+....+.+++|. |+. |.+|..
T Consensus 223 ~C~~Ctdv~~~vlvf~Cns~Hvt-C~dCFr 251 (446)
T KOG0006|consen 223 TCITCTDVRSPVLVFQCNSRHVT-CLDCFR 251 (446)
T ss_pred eeEEecCCccceEEEecCCceee-hHHhhh
Confidence 799999999999889999 998 999975
No 187
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.51 E-value=86 Score=32.95 Aligned_cols=44 Identities=27% Similarity=0.568 Sum_probs=29.2
Q ss_pred ccccceeccccccce----EEc---cCCCcccchhhHhcc-----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNA----VFV---PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~----v~~---pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
....|.||-+..-.. .|+ .|+--. |..|+.=- +.||.|+++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpv-Cr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPV-CKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCcc-ccchhhhhhhcCCccCCccCCchhh
Confidence 345899999863221 344 455445 99998422 689999988763
No 188
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=21.19 E-value=24 Score=31.49 Aligned_cols=41 Identities=24% Similarity=0.639 Sum_probs=27.2
Q ss_pred ccccceeccccccce-----EEccCCCcccchhhHhcc-----------CCCcccccc
Q 025999 194 MPDLCVICLEQEYNA-----VFVPCGHMCCCIICSWHL-----------TNCPLCRRR 235 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~-----v~~pCgH~~~C~~C~~~~-----------~~CPiCR~~ 235 (245)
+...|.+|.-.+... ---.||+++ |..|.... ..|+.|=..
T Consensus 167 ea~~C~~C~~~~Ftl~~RRHHCR~CG~iv-C~~Cs~n~~~l~~~~~k~~rvC~~CF~e 223 (288)
T KOG1729|consen 167 EATECMVCGCTEFTLSERRHHCRNCGDIV-CAPCSRNRFLLPNLSTKPIRVCDICFEE 223 (288)
T ss_pred cceecccCCCccccHHHHHHHHHhcchHh-hhhhhcCcccccccCCCCceecHHHHHH
Confidence 345899999742222 123899999 99998762 258888443
No 189
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=20.94 E-value=41 Score=24.68 Aligned_cols=33 Identities=30% Similarity=0.752 Sum_probs=22.2
Q ss_pred cceeccccccceEEccCCCcccchhhHhcc--CCCccccc
Q 025999 197 LCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRR 234 (245)
Q Consensus 197 ~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~--~~CPiCR~ 234 (245)
.|+||-+- +-||.-+-.|..|.-.- ..|.+|..
T Consensus 29 kC~ICDS~-----VRP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 29 KCVICDSY-----VRPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred cccccccc-----cccceeeeeehhcCCccccCceEEecC
Confidence 68998643 34666666688886433 57888865
No 190
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.67 E-value=38 Score=18.50 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=8.9
Q ss_pred chhhHhcc----CCCcccccc
Q 025999 219 CIICSWHL----TNCPLCRRR 235 (245)
Q Consensus 219 C~~C~~~~----~~CPiCR~~ 235 (245)
|..|-..+ +.||.|-.+
T Consensus 5 Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 5 CPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CcccCCcCCcccccChhhCCC
Confidence 45554433 457766554
No 191
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=20.59 E-value=40 Score=29.91 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=11.0
Q ss_pred EEecCCCCeEEeCCCC
Q 025999 86 AVKDDIGTVRIQRPHK 101 (245)
Q Consensus 86 ~~~d~~g~~~iq~P~~ 101 (245)
+..|.+|++++.....
T Consensus 159 v~F~~~G~~~~~~~~~ 174 (278)
T PF06697_consen 159 VTFDLDGSVTFSNMTS 174 (278)
T ss_pred EEEcCCCcEEEeccCC
Confidence 3567788888776654
No 192
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=20.48 E-value=5.4e+02 Score=21.91 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=19.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 113 ELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHYILQR 151 (245)
Q Consensus 113 ~Li~~l~~~~r~~~~~~i~~~~~g~~ll~~~~~r~~~~~ 151 (245)
+++.+-+...+...|.-+++.++++++++.+++.+.+.+
T Consensus 5 ~l~~~gg~~~k~vm~~Ll~~Si~s~aIiieR~~~l~~~~ 43 (227)
T PRK10801 5 DLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAA 43 (227)
T ss_pred HHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333334445555566667777766665544333
No 193
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.47 E-value=2.5e+02 Score=23.26 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=9.3
Q ss_pred CCCeEEeCCCC--CCeEEec
Q 025999 91 IGTVRIQRPHK--GPFYVSP 108 (245)
Q Consensus 91 ~g~~~iq~P~~--g~f~ls~ 108 (245)
-|.+-+|.|.. +|++++.
T Consensus 105 lG~~ll~~~~~s~~~~~l~~ 124 (184)
T COG3216 105 LGAWLLQRPAQSVGPVHLTW 124 (184)
T ss_pred hhhHHhcCCCCCCCchHHHH
Confidence 35555555553 3555544
No 194
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.45 E-value=44 Score=22.70 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=9.1
Q ss_pred CCCcccccccc
Q 025999 227 TNCPLCRRRID 237 (245)
Q Consensus 227 ~~CPiCR~~i~ 237 (245)
..||+|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 57999999874
No 195
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.44 E-value=4.5e+02 Score=22.51 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCceeEEeEeEEecCCCCeEEeCCCCC-Ce-EEec--CChHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHH
Q 025999 76 TGTSLTVVGEAVKDDIGTVRIQRPHKG-PF-YVSP--KTIDELIENLGKWARW----YKYASFGLTIFGTFLIA 141 (245)
Q Consensus 76 ~G~~lt~vGe~~~d~~g~~~iq~P~~g-~f-~ls~--~s~~~Li~~l~~~~r~----~~~~~i~~~~~g~~ll~ 141 (245)
..+.+|+||... ++++.==.-++| .+ .+.. .+.+++.+.....-.. ++.+++++..+|..+++
T Consensus 132 ~~~~vTVVa~q~---g~~l~py~t~~g~~i~ll~~G~~s~~e~f~~~~~~n~~~tW~lR~~G~llmf~G~~~~~ 202 (248)
T PF07787_consen 132 PPGPVTVVAKQR---GNTLVPYTTKNGDKILLLEEGKVSAEEMFAKEHSANNTLTWILRFIGWLLMFIGFFLLF 202 (248)
T ss_pred CCceEEEEEEEe---CCEEEEEEecCCCEEEEEEcCCcCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667799999742 223321112233 33 3333 4668887765554333 33444444445554444
No 196
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=20.43 E-value=1e+02 Score=24.07 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=8.8
Q ss_pred cccCCCceeEEeEeE
Q 025999 72 RLLPTGTSLTVVGEA 86 (245)
Q Consensus 72 ~~L~~G~~lt~vGe~ 86 (245)
=++|.|.-+.+.|-+
T Consensus 51 ci~pfG~vili~Gvv 65 (129)
T PF15099_consen 51 CIMPFGVVILIAGVV 65 (129)
T ss_pred EEEEehHHHHHHhhH
Confidence 456666666666654
No 197
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=20.40 E-value=3.7e+02 Score=26.12 Aligned_cols=63 Identities=24% Similarity=0.422 Sum_probs=44.0
Q ss_pred eeceeeeecccCCCceeEEeEeEEecC-----------------------C--CCeEEeCCC-CC----CeEEecCChHH
Q 025999 64 MLGVKRIERLLPTGTSLTVVGEAVKDD-----------------------I--GTVRIQRPH-KG----PFYVSPKTIDE 113 (245)
Q Consensus 64 ~~G~~~~E~~L~~G~~lt~vGe~~~d~-----------------------~--g~~~iq~P~-~g----~f~ls~~s~~~ 113 (245)
..|-+++|.+ +.|..|++-||.+.|- . ..++-..|. .| +||.-+.+.++
T Consensus 13 ~TG~eYlesL-rd~r~Vyi~Ge~V~dVt~HPafr~~i~~~A~lYD~~~~~~~~d~lt~~~~~~~G~~v~~~f~~p~s~eD 91 (519)
T TIGR02310 13 FTGEEYLASL-RDGREIYIYGERVKDVTTHPAFRNAAASVAKLYDALHDPATKDELCWETDTGNGGYTHKFFRYARSADE 91 (519)
T ss_pred cCHHHHHHHh-cCCCeEEECCEEccCcCCChhhHHHHHHHHHHHhhccCccccCceeeeccCCCCCEehhhhcCCCCHHH
Confidence 5566777776 7788999999988651 1 124443233 44 78999999999
Q ss_pred HHHHhhhhhHHHHH
Q 025999 114 LIENLGKWARWYKY 127 (245)
Q Consensus 114 Li~~l~~~~r~~~~ 127 (245)
|+++......|...
T Consensus 92 L~~rr~a~~~~a~~ 105 (519)
T TIGR02310 92 LRQQRDAIAEWSRL 105 (519)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887777666554
No 198
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.37 E-value=1.1e+02 Score=32.43 Aligned_cols=43 Identities=26% Similarity=0.620 Sum_probs=28.5
Q ss_pred cccceeccccccc----eEEc---cCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYN----AVFV---PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~----~v~~---pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|.||-+..-- -.|+ .|+--. |..|+.=- +.||.|++...+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPV-CrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPV-CRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCcc-ccchhhhhhhcCCccCCccCCchhh
Confidence 4489999986322 1344 455445 99998422 689999987653
No 199
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.28 E-value=61 Score=33.28 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=20.8
Q ss_pred cccceecccccc--ceEEccCCCcccchhhHhc
Q 025999 195 PDLCVICLEQEY--NAVFVPCGHMCCCIICSWH 225 (245)
Q Consensus 195 ~~~C~iC~~~~~--~~v~~pCgH~~~C~~C~~~ 225 (245)
.+.|-+|.-.-- .-++.||||.| -++|+..
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~F-H~~Cl~~ 848 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCF-HRDCLIR 848 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchH-HHHHHHH
Confidence 347889975432 23345999999 8999753
No 200
>PHA03237 envelope glycoprotein M; Provisional
Probab=20.20 E-value=7.2e+02 Score=23.56 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025999 135 FGTFLIAKRAIHYILQ 150 (245)
Q Consensus 135 ~g~~ll~~~~~r~~~~ 150 (245)
+.++++..+..|.+..
T Consensus 338 l~l~m~vvRlvRa~~y 353 (424)
T PHA03237 338 IIVIMLVVRLVRACLY 353 (424)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555556665543
No 201
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=20.20 E-value=2.7e+02 Score=20.16 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 135 FGTFLIAKRAIHYILQRKRRWELHRRVLAA 164 (245)
Q Consensus 135 ~g~~ll~~~~~r~~~~~r~~~~~~~~~~~~ 164 (245)
+|++...+..+||......|+++-.++...
T Consensus 55 vGlgyt~wF~~ryLL~~~~R~el~~~i~~~ 84 (90)
T PF14159_consen 55 VGLGYTGWFVYRYLLFAENRQELLQKIQSL 84 (90)
T ss_pred HHHHHHhHHHHHHHcChHhHHHHHHHHHHH
Confidence 567777888888887766666666666543
No 202
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.09 E-value=36 Score=24.30 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=5.8
Q ss_pred CCCccccc
Q 025999 227 TNCPLCRR 234 (245)
Q Consensus 227 ~~CPiCR~ 234 (245)
..||-||.
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 36888874
No 203
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=20.07 E-value=31 Score=25.48 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=18.7
Q ss_pred cCCceeEEEecCCCcccceeeeeeEEeecC
Q 025999 18 DDGTGRAFVVGARGATGFVLTVGSEVFEES 47 (245)
Q Consensus 18 ~d~~g~V~V~~~~~a~~~~~~~~~~~f~~~ 47 (245)
-|+.|||.|+.|.+....|-++...+|+-+
T Consensus 51 G~g~~RiYiVEPtG~~EdDPNvTdkkfPGN 80 (100)
T PF12120_consen 51 GEGRGRIYIVEPTGPFEDDPNVTDKKFPGN 80 (100)
T ss_dssp SSS--EEEEEEESS--EE-GGGSSSSSSS-
T ss_pred CCCCCcEEEEccCCCcccCccccCCCCCCC
Confidence 356799999999999877777777777543
No 204
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=20.06 E-value=1.9e+02 Score=20.70 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCCeEEeCCCCCCeEEecCChHHHHHHhhh
Q 025999 91 IGTVRIQRPHKGPFYVSPKTIDELIENLGK 120 (245)
Q Consensus 91 ~g~~~iq~P~~g~f~ls~~s~~~Li~~l~~ 120 (245)
...+.|.-.. +.|++|+.+.+++++.+..
T Consensus 70 ~~~i~I~t~~-~~y~isp~~~~~fi~~l~~ 98 (100)
T PF10882_consen 70 KNVILIKTKD-KTYVISPEDPEEFIEALKK 98 (100)
T ss_pred CCEEEEEECC-ceEEEcCCCHHHHHHHHHh
Confidence 4567777555 7899999999999987765
No 205
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=20.05 E-value=3.1e+02 Score=18.89 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 122 ARWYKYASFGLTIFGTFLIAKRAIHYI 148 (245)
Q Consensus 122 ~r~~~~~~i~~~~~g~~ll~~~~~r~~ 148 (245)
..|.-.++++.+++-++.+.++.++-|
T Consensus 34 neWfyiati~YtvlQig~~v~k~v~~~ 60 (66)
T PF10746_consen 34 NEWFYIATIAYTVLQIGYLVWKKVRDW 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777766655544
Done!