Query 025999
Match_columns 245
No_of_seqs 250 out of 1393
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 03:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.6 2.1E-15 7.3E-20 104.6 4.9 54 192-245 12-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.5 6.4E-15 2.2E-19 100.5 1.0 53 193-245 5-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.4 3.4E-14 1.2E-18 97.2 2.0 52 194-245 7-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.4 1.4E-13 4.9E-18 98.1 3.2 49 196-244 19-67 (79)
5 4ic3_A E3 ubiquitin-protein li 99.4 1.9E-13 6.4E-18 96.1 3.2 51 195-245 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.3 4.3E-13 1.5E-17 94.4 2.1 51 195-245 25-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.1 3.1E-11 1E-15 108.3 3.4 51 195-245 295-345 (345)
8 2d8t_A Dactylidin, ring finger 99.1 7.3E-11 2.5E-15 81.8 3.9 45 193-238 13-61 (71)
9 2ysl_A Tripartite motif-contai 99.0 1.9E-10 6.4E-15 79.8 5.0 45 193-238 18-69 (73)
10 2csy_A Zinc finger protein 183 99.0 1.7E-10 5.8E-15 81.9 4.1 45 193-238 13-61 (81)
11 2ecn_A Ring finger protein 141 99.0 1.3E-10 4.4E-15 80.1 3.0 48 194-243 14-65 (70)
12 1chc_A Equine herpes virus-1 r 99.0 1.9E-10 6.4E-15 78.8 3.2 49 195-244 5-58 (68)
13 2ea6_A Ring finger protein 4; 98.9 2.9E-10 1E-14 77.7 2.6 44 194-238 14-68 (69)
14 2kiz_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 76.9 3.6 47 194-241 13-66 (69)
15 2djb_A Polycomb group ring fin 98.9 5.6E-10 1.9E-14 77.4 3.8 46 193-239 13-63 (72)
16 2yur_A Retinoblastoma-binding 98.9 5.5E-10 1.9E-14 78.0 3.7 46 193-239 13-65 (74)
17 4ayc_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 88.5 2.5 44 196-240 54-101 (138)
18 3ng2_A RNF4, snurf, ring finge 98.9 3.3E-10 1.1E-14 78.0 1.5 43 195-238 10-63 (71)
19 2xeu_A Ring finger protein 4; 98.9 4.1E-10 1.4E-14 75.8 1.9 47 196-243 4-63 (64)
20 1bor_A Transcription factor PM 98.9 3.7E-10 1.3E-14 74.7 1.6 44 194-238 5-49 (56)
21 2ecy_A TNF receptor-associated 98.9 5.7E-10 1.9E-14 76.0 2.4 45 193-238 13-62 (66)
22 2ecm_A Ring finger and CHY zin 98.9 7.8E-10 2.7E-14 72.3 2.6 42 195-237 5-54 (55)
23 2ct2_A Tripartite motif protei 98.8 1.8E-09 6.3E-14 77.3 4.1 44 194-238 14-68 (88)
24 3ztg_A E3 ubiquitin-protein li 98.8 1.3E-09 4.6E-14 79.0 3.3 44 193-237 11-61 (92)
25 2l0b_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 79.0 2.7 44 194-238 39-89 (91)
26 2ect_A Ring finger protein 126 98.8 2.3E-09 7.8E-14 75.3 3.5 46 193-239 13-65 (78)
27 1x4j_A Ring finger protein 38; 98.8 1.6E-09 5.4E-14 75.7 2.4 44 194-238 22-72 (75)
28 1iym_A EL5; ring-H2 finger, ub 98.8 2.1E-09 7.3E-14 70.3 2.9 42 195-237 5-54 (55)
29 2ecw_A Tripartite motif-contai 98.8 5.2E-09 1.8E-13 74.2 4.9 45 193-238 17-71 (85)
30 2ysj_A Tripartite motif-contai 98.8 5E-09 1.7E-13 70.5 4.6 39 193-232 18-63 (63)
31 2egp_A Tripartite motif-contai 98.8 2.2E-09 7.4E-14 75.4 2.8 44 194-238 11-65 (79)
32 2ep4_A Ring finger protein 24; 98.8 1.5E-09 5.1E-14 75.5 1.9 47 194-241 14-67 (74)
33 2ecv_A Tripartite motif-contai 98.8 4.9E-09 1.7E-13 74.3 4.1 45 193-238 17-71 (85)
34 3l11_A E3 ubiquitin-protein li 98.7 3.1E-09 1E-13 80.4 2.6 45 193-238 13-62 (115)
35 1t1h_A Gspef-atpub14, armadill 98.7 3.3E-09 1.1E-13 74.5 2.5 44 194-238 7-55 (78)
36 3fl2_A E3 ubiquitin-protein li 98.7 2.9E-09 9.9E-14 81.6 2.1 43 195-238 52-99 (124)
37 3lrq_A E3 ubiquitin-protein li 98.7 3.9E-09 1.3E-13 78.0 2.1 43 195-238 22-70 (100)
38 2y1n_A E3 ubiquitin-protein li 98.7 5E-09 1.7E-13 94.9 3.3 47 196-243 333-384 (389)
39 1g25_A CDK-activating kinase a 98.7 3.5E-09 1.2E-13 71.8 1.5 42 196-238 4-55 (65)
40 1e4u_A Transcriptional repress 98.7 3.9E-09 1.3E-13 74.7 1.8 50 194-244 10-68 (78)
41 2ecj_A Tripartite motif-contai 98.7 7.5E-09 2.6E-13 68.2 2.8 38 194-232 14-58 (58)
42 1z6u_A NP95-like ring finger p 98.6 7.5E-09 2.6E-13 82.2 2.1 44 195-239 78-126 (150)
43 2ckl_A Polycomb group ring fin 98.6 8.6E-09 2.9E-13 77.0 2.3 43 195-238 15-62 (108)
44 2y43_A E3 ubiquitin-protein li 98.6 8.6E-09 3E-13 75.8 2.2 43 195-238 22-69 (99)
45 1jm7_A BRCA1, breast cancer ty 98.6 7.4E-09 2.5E-13 77.5 1.2 42 196-238 22-70 (112)
46 3hct_A TNF receptor-associated 98.6 2E-08 6.9E-13 76.3 3.4 45 193-238 16-65 (118)
47 1wgm_A Ubiquitin conjugation f 98.6 4.1E-08 1.4E-12 72.4 4.5 45 193-238 20-69 (98)
48 2ckl_B Ubiquitin ligase protei 98.6 1.8E-08 6E-13 81.0 2.2 44 194-238 53-102 (165)
49 2kr4_A Ubiquitin conjugation f 98.5 4.3E-08 1.5E-12 70.3 3.7 45 193-238 12-60 (85)
50 1jm7_B BARD1, BRCA1-associated 98.5 1.9E-08 6.6E-13 76.2 1.7 42 195-237 22-66 (117)
51 1rmd_A RAG1; V(D)J recombinati 98.5 2.9E-08 1E-12 75.0 2.1 43 195-238 23-70 (116)
52 2kre_A Ubiquitin conjugation f 98.5 5.7E-08 2E-12 71.9 3.6 45 193-238 27-75 (100)
53 1v87_A Deltex protein 2; ring- 98.5 2.3E-08 8E-13 75.2 1.2 42 196-238 26-94 (114)
54 2ecl_A Ring-box protein 2; RNF 98.5 4.4E-08 1.5E-12 69.6 2.2 43 195-238 15-76 (81)
55 4ap4_A E3 ubiquitin ligase RNF 98.4 4E-08 1.4E-12 75.2 1.3 43 195-238 7-60 (133)
56 3knv_A TNF receptor-associated 98.4 3.7E-08 1.3E-12 77.4 0.4 43 193-236 29-76 (141)
57 2c2l_A CHIP, carboxy terminus 98.4 1.4E-07 4.9E-12 81.0 3.6 44 194-238 207-255 (281)
58 4ap4_A E3 ubiquitin ligase RNF 98.4 1E-07 3.5E-12 72.9 1.9 49 194-243 71-132 (133)
59 3hcs_A TNF receptor-associated 98.3 3E-07 1E-11 74.0 2.7 45 193-238 16-65 (170)
60 3dpl_R Ring-box protein 1; ubi 98.2 3.6E-07 1.2E-11 68.3 2.1 42 195-237 37-100 (106)
61 2f42_A STIP1 homology and U-bo 98.2 7.8E-07 2.7E-11 72.5 2.8 45 193-238 104-153 (179)
62 2yu4_A E3 SUMO-protein ligase 98.1 1.4E-06 5E-11 63.4 2.9 41 194-235 6-59 (94)
63 4a0k_B E3 ubiquitin-protein li 98.0 7E-07 2.4E-11 67.9 0.4 41 196-237 49-111 (117)
64 2d8s_A Cellular modulator of i 97.9 5.9E-06 2E-10 58.5 3.1 44 195-239 15-71 (80)
65 3htk_C E3 SUMO-protein ligase 97.8 2.5E-05 8.6E-10 66.9 6.3 45 193-238 179-232 (267)
66 3vk6_A E3 ubiquitin-protein li 97.7 2.2E-05 7.4E-10 57.4 2.9 45 197-242 3-53 (101)
67 1wim_A KIAA0161 protein; ring 97.7 7.3E-06 2.5E-10 59.4 0.3 40 195-235 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 97.4 4.2E-05 1.4E-09 51.1 1.6 43 195-238 3-50 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00021 7.2E-09 47.5 1.3 44 194-237 5-58 (60)
70 2ct0_A Non-SMC element 1 homol 96.4 0.0037 1.2E-07 43.3 4.2 44 195-239 15-65 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.0016 5.5E-08 57.9 0.5 44 195-239 308-374 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 88.5 0.13 4.4E-06 36.9 1.0 29 196-225 4-35 (101)
73 2ko5_A Ring finger protein Z; 86.0 1 3.5E-05 32.2 4.4 48 193-242 26-77 (99)
74 2cs3_A Protein C14ORF4, MY039 85.8 0.26 8.8E-06 34.3 1.2 32 194-226 14-49 (93)
75 3nw0_A Non-structural maintena 83.4 0.5 1.7E-05 39.6 2.2 43 196-239 181-230 (238)
76 2zet_C Melanophilin; complex, 76.8 2.8 9.7E-05 32.6 4.4 41 194-235 67-117 (153)
77 1zbd_B Rabphilin-3A; G protein 60.6 28 0.00096 26.2 6.8 40 195-235 55-107 (134)
78 2fiy_A Protein FDHE homolog; F 49.2 5 0.00017 34.9 1.0 42 194-235 181-231 (309)
79 2knc_B Integrin beta-3; transm 48.5 61 0.0021 22.0 7.5 23 140-162 30-52 (79)
80 2jne_A Hypothetical protein YF 45.7 5.7 0.00019 28.5 0.6 41 194-239 31-74 (101)
81 1weo_A Cellulose synthase, cat 41.5 9.9 0.00034 26.8 1.3 43 195-238 16-70 (93)
82 3zyq_A Hepatocyte growth facto 34.3 27 0.00091 28.6 3.1 35 190-225 159-197 (226)
83 1z60_A TFIIH basal transcripti 32.8 28 0.00094 22.5 2.3 35 197-232 17-58 (59)
84 2d8v_A Zinc finger FYVE domain 32.7 20 0.00069 23.7 1.6 32 193-226 6-38 (67)
85 1lko_A Rubrerythrin all-iron(I 32.0 22 0.00074 28.4 2.1 28 210-241 158-186 (191)
86 2egq_A FHL1 protein; LIM domai 30.7 22 0.00077 23.2 1.7 19 219-237 6-26 (77)
87 3mjh_B Early endosome antigen 30.2 5 0.00017 23.1 -1.4 8 229-236 8-15 (34)
88 2yql_A PHD finger protein 21A; 30.2 16 0.00053 22.9 0.8 10 195-204 9-18 (56)
89 3pwf_A Rubrerythrin; non heme 29.5 22 0.00076 27.9 1.7 27 210-241 141-168 (170)
90 1fp0_A KAP-1 corepressor; PHD 28.7 34 0.0012 23.9 2.4 12 194-205 24-35 (88)
91 2jtn_A LIM domain-binding prot 28.5 21 0.00073 27.8 1.5 20 219-238 110-131 (182)
92 2knc_B Integrin beta-3; transm 27.6 1.4E+02 0.0049 20.1 8.0 32 128-159 15-46 (79)
93 1joc_A EEA1, early endosomal a 27.6 11 0.00039 28.0 -0.3 30 195-225 69-102 (125)
94 1mm2_A MI2-beta; PHD, zinc fin 27.3 29 0.001 22.1 1.7 10 195-204 9-18 (61)
95 2ehe_A Four and A half LIM dom 27.2 17 0.00059 24.1 0.6 19 219-237 6-26 (82)
96 2cuq_A Four and A half LIM dom 26.7 20 0.00069 23.6 0.9 10 228-237 43-52 (80)
97 2gmg_A Hypothetical protein PF 26.6 22 0.00074 25.8 1.1 20 211-235 71-93 (105)
98 3i2d_A E3 SUMO-protein ligase 26.5 27 0.00091 31.1 1.9 43 194-237 248-299 (371)
99 2rgt_A Fusion of LIM/homeobox 26.1 26 0.0009 26.9 1.6 42 196-238 34-77 (169)
100 2l7x_A Envelope glycoprotein; 25.9 7.6 0.00026 26.0 -1.3 31 195-226 5-40 (77)
101 3c5k_A HD6, histone deacetylas 25.7 38 0.0013 24.5 2.3 25 195-220 24-48 (109)
102 2ziu_A MUS81 protein; helix-ha 25.6 58 0.002 27.6 3.9 82 35-121 18-105 (311)
103 2xqn_T Testin, TESS; metal-bin 25.3 27 0.00094 25.2 1.5 42 196-238 31-75 (126)
104 1m3v_A FLIN4, fusion of the LI 25.0 25 0.00085 25.5 1.2 41 197-238 34-81 (122)
105 4fo9_A E3 SUMO-protein ligase 24.9 30 0.001 30.6 1.8 43 194-237 214-265 (360)
106 2cup_A Skeletal muscle LIM-pro 23.4 24 0.00082 24.4 0.8 40 197-237 35-77 (101)
107 3m62_A Ubiquitin conjugation f 22.6 45 0.0015 33.4 2.8 45 193-238 889-938 (968)
108 1l8d_A DNA double-strand break 21.6 24 0.00081 25.2 0.5 6 197-202 49-54 (112)
109 2l5u_A Chromodomain-helicase-D 20.8 42 0.0014 21.3 1.5 39 194-234 10-57 (61)
110 1vfy_A Phosphatidylinositol-3- 20.7 45 0.0015 22.0 1.7 28 196-224 12-43 (73)
111 3f1z_A Putative nucleic acid-b 20.5 41 0.0014 23.9 1.5 29 72-100 101-130 (133)
112 3t7l_A Zinc finger FYVE domain 20.2 40 0.0014 23.3 1.4 42 195-237 20-75 (90)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=104.55 Aligned_cols=54 Identities=28% Similarity=0.653 Sum_probs=49.2
Q ss_pred CcccccceeccccccceEEccCCCcccchhhHhccCCCccccccccceeecccC
Q 025999 192 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 192 ~~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i~~~ 245 (245)
..+...|+||++++++++++||||+++|..|+..+..||+||++|..++++|.+
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 334568999999999999999999977999999999999999999999999964
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.47 E-value=6.4e-15 Score=100.55 Aligned_cols=53 Identities=25% Similarity=0.751 Sum_probs=47.3
Q ss_pred cccccceeccccccceEEc--cCCCcccchhhHhccC----CCccccccccceeecccC
Q 025999 193 VMPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHLT----NCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~--pCgH~~~C~~C~~~~~----~CPiCR~~i~~~~~i~~~ 245 (245)
+....|+||++++++++++ ||||+++|..|+..+. .||+||++|..++++|.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 3455899999999998887 9999977999999885 899999999999999974
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.42 E-value=3.4e-14 Score=97.22 Aligned_cols=52 Identities=35% Similarity=0.773 Sum_probs=46.7
Q ss_pred ccccceeccccccceEEc--cCCCcccchhhHhcc----CCCccccccccceeecccC
Q 025999 194 MPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~--pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~i~~~ 245 (245)
+...|+||++++++++++ ||||+++|..|+..+ ..||+||++|..++++|.+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 345899999999999988 999997799999888 3699999999999999964
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.38 E-value=1.4e-13 Score=98.05 Aligned_cols=49 Identities=43% Similarity=1.128 Sum_probs=46.3
Q ss_pred ccceeccccccceEEccCCCcccchhhHhccCCCccccccccceeeccc
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFR 244 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i~~ 244 (245)
..|+||++.+++++++||||.++|..|+..+..||+||.+|...+++|.
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBC
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEe
Confidence 3799999999999999999996699999999999999999999999985
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.37 E-value=1.9e-13 Score=96.11 Aligned_cols=51 Identities=33% Similarity=0.853 Sum_probs=46.7
Q ss_pred cccceeccccccceEEccCCCcccchhhHhccCCCccccccccceeecccC
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i~~~ 245 (245)
...|+||++...+++++||||.++|..|+..+..||+||++|...+++|-|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 448999999999999999999955999999999999999999999999864
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.3e-13 Score=94.40 Aligned_cols=51 Identities=35% Similarity=0.886 Sum_probs=47.0
Q ss_pred cccceeccccccceEEccCCCcccchhhHhccCCCccccccccceeecccC
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i~~~ 245 (245)
...|+||++.+.+++++||||.++|..|+..+..||+||.+|...+++|.+
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 448999999999999999999955999999999999999999999999964
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.09 E-value=3.1e-11 Score=108.33 Aligned_cols=51 Identities=41% Similarity=1.000 Sum_probs=46.5
Q ss_pred cccceeccccccceEEccCCCcccchhhHhccCCCccccccccceeecccC
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 245 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~~CPiCR~~i~~~~~i~~~ 245 (245)
...|+||++.+.+++++||||.++|..|+..+..||+||.+|...+++|-|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 458999999999999999999966999999999999999999999999964
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.3e-11 Score=81.78 Aligned_cols=45 Identities=33% Similarity=0.819 Sum_probs=39.9
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.....|.||++...+++.+||||.| |..|+..| ..||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 3455899999999999999999998 99999987 579999999864
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.9e-10 Score=79.82 Aligned_cols=45 Identities=31% Similarity=0.818 Sum_probs=39.5
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhccC-------CCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLT-------NCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~~-------~CPiCR~~i~~ 238 (245)
.....|.||++...+++.+||||.| |..|+..|. .||+||.++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456899999999999999999999 999998773 79999998864
No 10
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=81.90 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=39.9
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.....|.||++...+++++||||.| |..|+..| ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 3455899999999999999999999 99999887 579999999864
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=80.12 Aligned_cols=48 Identities=27% Similarity=0.748 Sum_probs=41.9
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccceeecc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTF 243 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~i~ 243 (245)
....|.||++...+ +++||||.| |..|+..| ..||+||.++.....+|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34589999999999 889999998 99999987 57999999998876655
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.99 E-value=1.9e-10 Score=78.78 Aligned_cols=49 Identities=37% Similarity=0.859 Sum_probs=42.0
Q ss_pred cccceeccccccce-EEccCCCcccchhhHhcc----CCCccccccccceeeccc
Q 025999 195 PDLCVICLEQEYNA-VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFR 244 (245)
Q Consensus 195 ~~~C~iC~~~~~~~-v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~i~~ 244 (245)
...|.||++...++ +.+||||.| |..|+..| ..||+||.++....+.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 34799999999884 889999998 99999887 689999999998776553
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.9e-10 Score=77.73 Aligned_cols=44 Identities=32% Similarity=0.784 Sum_probs=38.1
Q ss_pred ccccceeccccccce-------EEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~-------v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
....|.||++...+. ++++|||.| |..|+..| ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 455899999988776 889999999 99999887 589999998864
No 14
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=5e-10 Score=76.88 Aligned_cols=47 Identities=28% Similarity=0.668 Sum_probs=38.8
Q ss_pred ccccceeccccc---cceEEccCCCcccchhhHhcc----CCCccccccccceee
Q 025999 194 MPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 241 (245)
Q Consensus 194 ~~~~C~iC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~ 241 (245)
....|.||++.. ..++.+||||.| |..|+..| ..||+||.+|....+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 345899998765 457889999999 99999887 589999999987554
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.6e-10 Score=77.45 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=40.2
Q ss_pred cccccceeccccccceEEc-cCCCcccchhhHhcc----CCCccccccccce
Q 025999 193 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQV 239 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~----~~CPiCR~~i~~~ 239 (245)
.....|.||++...+++.+ +|||.| |..|+..| ..||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3456899999999999887 999999 99999887 5899999998764
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.93 E-value=5.5e-10 Score=78.03 Aligned_cols=46 Identities=30% Similarity=0.650 Sum_probs=39.7
Q ss_pred cccccceeccccccceEEcc-CCCcccchhhHhcc------CCCccccccccce
Q 025999 193 VMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRIDQV 239 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~p-CgH~~~C~~C~~~~------~~CPiCR~~i~~~ 239 (245)
.....|.||++...+++.+| |||.| |..|+..| ..||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 44568999999999999999 99999 99999877 3799999986543
No 17
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.91 E-value=3.5e-10 Score=88.50 Aligned_cols=44 Identities=34% Similarity=0.754 Sum_probs=39.4
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc----CCCcccccccccee
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 240 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~ 240 (245)
..|+||++...+++.+||||.| |..|+..| ..||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 3699999999999999999998 99999887 57999999997643
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.89 E-value=3.3e-10 Score=78.03 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=37.8
Q ss_pred cccceeccccccce-------EEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~-------v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
...|.||++...++ +.++|||.| |..|+..| ..||+||.++..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccCh
Confidence 45799999988776 889999999 99999887 589999999874
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.89 E-value=4.1e-10 Score=75.82 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=39.6
Q ss_pred ccceeccccccce-------EEccCCCcccchhhHhcc----CCCccccccccc--eeecc
Q 025999 196 DLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 243 (245)
Q Consensus 196 ~~C~iC~~~~~~~-------v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~--~~~i~ 243 (245)
..|.||++...++ +.++|||.| |..|+..| ..||+||.++.. +.++|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 4799999988765 788999999 99999887 589999999874 55555
No 20
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=3.7e-10 Score=74.73 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=38.8
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc-CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-~~CPiCR~~i~~ 238 (245)
+...|.||++...+++.+||||.| |..|+..+ ..||+||+++..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcc-cHHHHccCCCCCCcCCcEeec
Confidence 345799999999999999999999 99999877 589999998764
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5.7e-10 Score=76.04 Aligned_cols=45 Identities=24% Similarity=0.452 Sum_probs=39.4
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
.+...|.||++...+++.++|||.| |..|+..| ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456899999999999999999999 99999876 479999999865
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.87 E-value=7.8e-10 Score=72.35 Aligned_cols=42 Identities=36% Similarity=0.753 Sum_probs=36.6
Q ss_pred cccceeccccccc----eEEccCCCcccchhhHhcc----CCCcccccccc
Q 025999 195 PDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 237 (245)
Q Consensus 195 ~~~C~iC~~~~~~----~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~ 237 (245)
...|.||++...+ ++++||||.| |..|+..| ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 3479999998755 7889999999 99999888 68999999875
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=77.31 Aligned_cols=44 Identities=30% Similarity=0.660 Sum_probs=38.3
Q ss_pred ccccceeccccccc----eEEccCCCcccchhhHhcc-------CCCccccccccc
Q 025999 194 MPDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~----~v~~pCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 238 (245)
+...|.||++...+ ++.+||||.| |..|+..| ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34589999999988 9999999999 99999887 479999997753
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-09 Score=78.98 Aligned_cols=44 Identities=32% Similarity=0.692 Sum_probs=38.7
Q ss_pred cccccceeccccccceEEcc-CCCcccchhhHhcc------CCCcccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRID 237 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~p-CgH~~~C~~C~~~~------~~CPiCR~~i~ 237 (245)
.+...|.||++...+++.+| |||.| |..|+..+ ..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34568999999999999999 99999 99999876 48999999873
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=79.01 Aligned_cols=44 Identities=27% Similarity=0.535 Sum_probs=37.7
Q ss_pred ccccceeccccccc---eEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
....|.||++.... ++.+||||.| |..|+..| ..||+||.++..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 45589999988766 7788999999 99999987 589999998864
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.81 E-value=2.3e-09 Score=75.34 Aligned_cols=46 Identities=24% Similarity=0.534 Sum_probs=37.0
Q ss_pred cccccceecccccc---ceEEccCCCcccchhhHhcc----CCCccccccccce
Q 025999 193 VMPDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 239 (245)
Q Consensus 193 ~~~~~C~iC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~ 239 (245)
.....|.||++... .+..+||||.| |..|+..| ..||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34558999987654 44678999999 99999887 5899999998753
No 27
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.6e-09 Score=75.69 Aligned_cols=44 Identities=27% Similarity=0.644 Sum_probs=36.9
Q ss_pred ccccceeccccccce---EEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNA---VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
....|.||++..... ..+||||.| |..|+..| ..||+||+++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345899999876554 778999999 99999988 589999998865
No 28
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.80 E-value=2.1e-09 Score=70.28 Aligned_cols=42 Identities=36% Similarity=0.758 Sum_probs=35.8
Q ss_pred cccceeccccccc---eEEcc-CCCcccchhhHhcc----CCCcccccccc
Q 025999 195 PDLCVICLEQEYN---AVFVP-CGHMCCCIICSWHL----TNCPLCRRRID 237 (245)
Q Consensus 195 ~~~C~iC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CPiCR~~i~ 237 (245)
...|.||++.... ++.+| |||.| |..|+..| ..||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 3479999998777 77787 99999 99999987 58999998864
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=5.2e-09 Score=74.20 Aligned_cols=45 Identities=33% Similarity=0.573 Sum_probs=38.9
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----------CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----------~~CPiCR~~i~~ 238 (245)
.....|.||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3455899999999999999999999 99999764 479999999864
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=5e-09 Score=70.53 Aligned_cols=39 Identities=36% Similarity=0.878 Sum_probs=34.3
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc-------CCCccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 232 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CPiC 232 (245)
.+...|.||++...+++.+||||.| |..|+..| ..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 3455899999999999999999999 99999876 379998
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.79 E-value=2.2e-09 Score=75.43 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=38.5
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc-----------CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----------TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----------~~CPiCR~~i~~ 238 (245)
+...|.||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 355899999999999999999999 99999864 369999999864
No 32
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.5e-09 Score=75.53 Aligned_cols=47 Identities=30% Similarity=0.655 Sum_probs=38.2
Q ss_pred ccccceeccccccc---eEEccCCCcccchhhHhcc----CCCccccccccceee
Q 025999 194 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 241 (245)
Q Consensus 194 ~~~~C~iC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~ 241 (245)
....|.||++.... ...+||||.| |..|+..| ..||+||.+|.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34589999988643 4556999999 99999887 589999999987644
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=4.9e-09 Score=74.31 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=39.0
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----------CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----------~~CPiCR~~i~~ 238 (245)
.....|.||++...+++.+||||.| |..|+..+ ..||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3455899999999999999999999 99998764 579999998874
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.74 E-value=3.1e-09 Score=80.35 Aligned_cols=45 Identities=36% Similarity=0.783 Sum_probs=39.6
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
.+...|.||++...+++.+||||.| |..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456899999999999999999999 99999887 379999999864
No 35
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.74 E-value=3.3e-09 Score=74.48 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=39.0
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
+...|+||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 355899999999999999999999 99999876 469999999864
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.73 E-value=2.9e-09 Score=81.61 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=38.7
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|+||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34799999999999999999999 99999776 389999999976
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.71 E-value=3.9e-09 Score=78.03 Aligned_cols=43 Identities=30% Similarity=0.809 Sum_probs=38.5
Q ss_pred cccceeccccccceEE-ccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~-~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|.||++...+++. ++|||.| |..|+..| ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4489999999999999 9999999 99999887 479999999854
No 38
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=5e-09 Score=94.90 Aligned_cols=47 Identities=34% Similarity=0.832 Sum_probs=42.0
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccceeecc
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTF 243 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~~~i~ 243 (245)
..|+||++...+++++||||.| |..|+..| ..||+||.++.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 4899999999999999999999 99999866 58999999998876553
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=3.5e-09 Score=71.83 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=34.9
Q ss_pred ccceeccc-cccce----EEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 196 DLCVICLE-QEYNA----VFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 196 ~~C~iC~~-~~~~~----v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
..|+||++ ...++ ++++|||.| |..|+..+ ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 55554 568999999 99999887 479999999864
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.69 E-value=3.9e-09 Score=74.69 Aligned_cols=50 Identities=28% Similarity=0.711 Sum_probs=39.2
Q ss_pred ccccceeccccc--cceEEcc--CCCcccchhhHhcc-----CCCccccccccceeeccc
Q 025999 194 MPDLCVICLEQE--YNAVFVP--CGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTFR 244 (245)
Q Consensus 194 ~~~~C~iC~~~~--~~~v~~p--CgH~~~C~~C~~~~-----~~CPiCR~~i~~~~~i~~ 244 (245)
+...|+||++.. .+..++| |||.| |..|+..+ ..||.||+++......|+
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 345899999977 3456666 99999 99999776 379999999987655554
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=7.5e-09 Score=68.23 Aligned_cols=38 Identities=34% Similarity=0.860 Sum_probs=33.9
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc-------CCCccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 232 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CPiC 232 (245)
+...|.||++...+++.+||||.| |..|+..| ..||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 455899999999999999999999 99999877 479998
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.64 E-value=7.5e-09 Score=82.20 Aligned_cols=44 Identities=34% Similarity=0.677 Sum_probs=39.1
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccce
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQV 239 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~ 239 (245)
...|.||++...+++.+||||.| |..|+..+ ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34799999999999999999999 99999877 3799999998753
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.64 E-value=8.6e-09 Score=77.03 Aligned_cols=43 Identities=26% Similarity=0.652 Sum_probs=38.8
Q ss_pred cccceeccccccceEEc-cCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
...|.||++...+++.+ ||||.| |..|+..+ ..||+||.++..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 45899999999999987 999999 99999887 589999999875
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.63 E-value=8.6e-09 Score=75.76 Aligned_cols=43 Identities=30% Similarity=0.699 Sum_probs=38.4
Q ss_pred cccceeccccccceEEc-cCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
...|.||++...+++.+ ||||.| |..|+..+ ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45899999999999888 999999 99999887 479999998874
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=7.4e-09 Score=77.54 Aligned_cols=42 Identities=38% Similarity=0.869 Sum_probs=37.4
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc-------CCCccccccccc
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 238 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 238 (245)
..|.||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3799999999999999999999 99999876 279999998864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.60 E-value=2e-08 Score=76.27 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=40.0
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
.....|+||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456899999999999999999999 99999887 389999999875
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.58 E-value=4.1e-08 Score=72.39 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=40.1
Q ss_pred cccccceeccccccceEEccCC-CcccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCG-HMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCg-H~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.+...|+||++-..++|.+||| |.| |..|+..+ ..||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3456999999999999999999 999 99999887 479999998764
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.56 E-value=1.8e-08 Score=80.97 Aligned_cols=44 Identities=30% Similarity=0.686 Sum_probs=38.5
Q ss_pred ccccceeccccccceEEc-cCCCcccchhhHhcc-----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
....|+||++...+++.+ ||||.| |..|+..| ..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 455899999999999887 999999 99999887 369999999853
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.54 E-value=4.3e-08 Score=70.34 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=40.2
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.+...|+||++-..+++.+||||.| |..|+..+ .+||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3456999999999999999999999 99999887 589999998764
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.9e-08 Score=76.24 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=38.2
Q ss_pred cccceeccccccceEEc-cCCCcccchhhHhcc--CCCcccccccc
Q 025999 195 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL--TNCPLCRRRID 237 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~--~~CPiCR~~i~ 237 (245)
...|.||++...+++.+ ||||.| |..|+..+ ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhcCCCcCCCCcCc
Confidence 34799999999999999 999999 99999988 57999999885
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.51 E-value=2.9e-08 Score=75.00 Aligned_cols=43 Identities=30% Similarity=0.601 Sum_probs=38.7
Q ss_pred cccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|+||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45899999999999999999999 99999876 479999999865
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.51 E-value=5.7e-08 Score=71.87 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=40.1
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.+...|+||++-..+++.+||||.| |..|+..+ .+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 3456999999999999999999999 99999887 489999998864
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.49 E-value=2.3e-08 Score=75.18 Aligned_cols=42 Identities=26% Similarity=0.729 Sum_probs=34.2
Q ss_pred ccceeccccccce------------------EEccCCCcccchhhHhcc---------CCCccccccccc
Q 025999 196 DLCVICLEQEYNA------------------VFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ 238 (245)
Q Consensus 196 ~~C~iC~~~~~~~------------------v~~pCgH~~~C~~C~~~~---------~~CPiCR~~i~~ 238 (245)
..|.||++..... .++||||.| |..|+..| ..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3799999987443 378999999 99999876 279999988754
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=4.4e-08 Score=69.56 Aligned_cols=43 Identities=30% Similarity=0.568 Sum_probs=33.5
Q ss_pred cccceeccccccc--------------eEEc-cCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYN--------------AVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~--------------~v~~-pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.+.|.||++...+ ++.+ +|||.| +..|+.+| ..||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcch
Confidence 3468888877654 4455 599999 99999987 579999998754
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.44 E-value=4e-08 Score=75.24 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=37.9
Q ss_pred cccceeccccccce-------EEccCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~-------v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
...|.||++...++ +.++|||.| |..|+..| ..||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 44799999998877 899999999 99999887 489999999874
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.41 E-value=3.7e-08 Score=77.37 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=38.4
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRI 236 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i 236 (245)
.+...|+||++...+++.++|||.| |..|+..+ ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456899999999999999999999 99999887 3799999975
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=1.4e-07 Score=81.04 Aligned_cols=44 Identities=16% Similarity=-0.024 Sum_probs=39.0
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
....|+||++-..+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456899999999999999999999 99999876 349999999864
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.36 E-value=1e-07 Score=72.94 Aligned_cols=49 Identities=29% Similarity=0.708 Sum_probs=40.5
Q ss_pred ccccceeccccccce-------EEccCCCcccchhhHhcc----CCCccccccccc--eeecc
Q 025999 194 MPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 243 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~-------v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~--~~~i~ 243 (245)
+...|.||++...++ +.++|||.| |..|+..| +.||+||.++.. +.++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 345799999987775 888999999 99999887 689999999875 45554
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.27 E-value=3e-07 Score=74.00 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=40.1
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
.+...|+||++...+++.++|||.| |..|+..+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 4456899999999999999999999 99999887 389999999875
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.23 E-value=3.6e-07 Score=68.31 Aligned_cols=42 Identities=26% Similarity=0.549 Sum_probs=33.9
Q ss_pred cccceeccccccc------------------eEEccCCCcccchhhHhcc----CCCcccccccc
Q 025999 195 PDLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 237 (245)
Q Consensus 195 ~~~C~iC~~~~~~------------------~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~ 237 (245)
.+.|.||++.... .+.+||+|.| +..|+..| ..||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 3479999877553 3667999999 99999987 57999999854
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.15 E-value=7.8e-07 Score=72.47 Aligned_cols=45 Identities=16% Similarity=-0.047 Sum_probs=39.6
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc-----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
.....|+||++-..++|.+||||.| |..|+..+ ..||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3456999999999999999999999 99999876 359999998864
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=1.4e-06 Score=63.36 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=35.7
Q ss_pred ccccceeccccccceEEcc-CCCcccchhhHhcc----------CCCcc--cccc
Q 025999 194 MPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL----------TNCPL--CRRR 235 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~p-CgH~~~C~~C~~~~----------~~CPi--CR~~ 235 (245)
....|+||++...+++.+| |||.| |..|+..+ ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4568999999999999996 99999 99999776 28999 9855
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.04 E-value=7e-07 Score=67.85 Aligned_cols=41 Identities=27% Similarity=0.577 Sum_probs=0.0
Q ss_pred ccceeccccccc------------------eEEccCCCcccchhhHhcc----CCCcccccccc
Q 025999 196 DLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 237 (245)
Q Consensus 196 ~~C~iC~~~~~~------------------~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~ 237 (245)
+.|.||++.... ++.+||+|.| +..|+..| ..||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 589999987654 2335999999 99999998 57999999854
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=5.9e-06 Score=58.47 Aligned_cols=44 Identities=25% Similarity=0.593 Sum_probs=35.6
Q ss_pred cccceeccccc--cceEEccCC-----CcccchhhHhcc------CCCccccccccce
Q 025999 195 PDLCVICLEQE--YNAVFVPCG-----HMCCCIICSWHL------TNCPLCRRRIDQV 239 (245)
Q Consensus 195 ~~~C~iC~~~~--~~~v~~pCg-----H~~~C~~C~~~~------~~CPiCR~~i~~~ 239 (245)
...|.||++.. .+.+++||+ |.| ...|+.+| ..||+||..+...
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 45799999765 346678996 999 99999998 3799999988643
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.5e-05 Score=66.94 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=38.1
Q ss_pred cccccceeccccccceEEc-cCCCcccchhhHhcc------CCCcc--ccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPL--CRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CPi--CR~~i~~ 238 (245)
.....|+||++...++|.. .|||.| |..|+..+ ..||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3455899999999999975 999999 99999876 26999 9987754
No 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.67 E-value=2.2e-05 Score=57.35 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=34.4
Q ss_pred cceeccccccc-eEEccCCCcccchhhHhcc-----CCCccccccccceeec
Q 025999 197 LCVICLEQEYN-AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRT 242 (245)
Q Consensus 197 ~C~iC~~~~~~-~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~~~i 242 (245)
-|..|--.... ..++||.|+| |.+|+..+ +.||+|+.+|..+...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 36666655544 3567999999 99999654 5899999999987654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.66 E-value=7.3e-06 Score=59.38 Aligned_cols=40 Identities=23% Similarity=0.662 Sum_probs=31.0
Q ss_pred cccceeccccccceEE---ccCCCcccchhhHhcc------------CCCcc--cccc
Q 025999 195 PDLCVICLEQEYNAVF---VPCGHMCCCIICSWHL------------TNCPL--CRRR 235 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~---~pCgH~~~C~~C~~~~------------~~CPi--CR~~ 235 (245)
...|.||++......+ .+|||.| |..|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4479999988765433 3899999 99997543 26999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.42 E-value=4.2e-05 Score=51.11 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=38.2
Q ss_pred cccceeccccccceEEc-cCCCcccchhhHhcc----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
...|+||++...++++. +|||.| |..|+..| .+||+++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCCh
Confidence 35799999999999999 999999 99999988 579999998854
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.98 E-value=0.00021 Score=47.52 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=33.9
Q ss_pred ccccceeccccccceEEccCCCc----ccchhhHhcc------CCCcccccccc
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHM----CCCIICSWHL------TNCPLCRRRID 237 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~----~~C~~C~~~~------~~CPiCR~~i~ 237 (245)
+...|.||++...+..+.||.+. ++-..|+.+| ..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34589999988766667897652 3488999888 47999998764
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.37 E-value=0.0037 Score=43.27 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=34.4
Q ss_pred cccceeccccccceEEc-cCCCcccchhhHhcc------CCCccccccccce
Q 025999 195 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPLCRRRIDQV 239 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CPiCR~~i~~~ 239 (245)
...|.||++.......- .|+|.| -..|+.+| .+||+||+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34799999877544332 799999 89999877 4799999887643
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.89 E-value=0.0016 Score=57.86 Aligned_cols=44 Identities=20% Similarity=0.580 Sum_probs=33.8
Q ss_pred cccceeccccccc--------eEEccCCCcccchhhHhcc---------------CCCccccccccce
Q 025999 195 PDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL---------------TNCPLCRRRIDQV 239 (245)
Q Consensus 195 ~~~C~iC~~~~~~--------~v~~pCgH~~~C~~C~~~~---------------~~CPiCR~~i~~~ 239 (245)
...|.||++.... +-..+|||.| ...|...| ..||.||.+|...
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4479999987655 1124799999 89999877 1599999998753
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.55 E-value=0.13 Score=36.88 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=23.9
Q ss_pred ccceecccc-ccceEE--ccCCCcccchhhHhc
Q 025999 196 DLCVICLEQ-EYNAVF--VPCGHMCCCIICSWH 225 (245)
Q Consensus 196 ~~C~iC~~~-~~~~v~--~pCgH~~~C~~C~~~ 225 (245)
..|.||.+. ...++. ++|+|.+ |..|+..
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 379999975 556665 8999999 9999886
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.97 E-value=1 Score=32.20 Aligned_cols=48 Identities=25% Similarity=0.673 Sum_probs=36.2
Q ss_pred cccccceeccccccceEEccCCCcccchhhHhcc----CCCccccccccceeec
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 242 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~~~i 242 (245)
.-..-|..|+-..+..| .|.--++|-.|...+ ..||||..++...+++
T Consensus 26 ~G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cCcccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 34558999998888654 577444599999887 4799999888765543
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.81 E-value=0.26 Score=34.28 Aligned_cols=32 Identities=38% Similarity=0.711 Sum_probs=26.5
Q ss_pred ccccceeccccccceEEccCC----CcccchhhHhcc
Q 025999 194 MPDLCVICLEQEYNAVFVPCG----HMCCCIICSWHL 226 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCg----H~~~C~~C~~~~ 226 (245)
..-.|.+|.++--+.-|+.|- |.| |..|....
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~s 49 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRES 49 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCee-eccccHHH
Confidence 345899999999999888884 998 99997653
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=83.41 E-value=0.5 Score=39.63 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=33.0
Q ss_pred ccceeccccccceEEcc-CCCcccchhhHhcc------CCCccccccccce
Q 025999 196 DLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRIDQV 239 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~p-CgH~~~C~~C~~~~------~~CPiCR~~i~~~ 239 (245)
..|.+|.+-......=+ |+|.+ -..|+..+ ..||.|+.+...-
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 47999998776554433 89998 89999775 3899999876553
No 76
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=76.80 E-value=2.8 Score=32.62 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=28.0
Q ss_pred ccccceecccccc-----ceEEccCCCcccchhhHhcc-----CCCcccccc
Q 025999 194 MPDLCVICLEQEY-----NAVFVPCGHMCCCIICSWHL-----TNCPLCRRR 235 (245)
Q Consensus 194 ~~~~C~iC~~~~~-----~~v~~pCgH~~~C~~C~~~~-----~~CPiCR~~ 235 (245)
....|.+|..... -.+-..|.|.+ |..|.... -.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 3558999998743 23445788887 88887443 258888653
No 77
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.59 E-value=28 Score=26.22 Aligned_cols=40 Identities=25% Similarity=0.564 Sum_probs=27.1
Q ss_pred cccceecccccc-----ceEEccCCCcccchhhHhcc--------CCCcccccc
Q 025999 195 PDLCVICLEQEY-----NAVFVPCGHMCCCIICSWHL--------TNCPLCRRR 235 (245)
Q Consensus 195 ~~~C~iC~~~~~-----~~v~~pCgH~~~C~~C~~~~--------~~CPiCR~~ 235 (245)
...|.+|..... ..+-..|.|.+ |..|.... -.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 458999998773 22345788887 88887644 257788653
No 78
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=49.25 E-value=5 Score=34.85 Aligned_cols=42 Identities=19% Similarity=0.513 Sum_probs=31.6
Q ss_pred ccccceeccccccceEEc----cCCCc-ccchhhHhcc----CCCcccccc
Q 025999 194 MPDLCVICLEQEYNAVFV----PCGHM-CCCIICSWHL----TNCPLCRRR 235 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~----pCgH~-~~C~~C~~~~----~~CPiCR~~ 235 (245)
....|+||-..+.-.++. .=|++ ..|.-|...| .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 355899999999887765 24532 2499999888 489999875
No 79
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.48 E-value=61 Score=22.00 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025999 140 IAKRAIHYILQRKRRWELHRRVL 162 (245)
Q Consensus 140 l~~~~~r~~~~~r~~~~~~~~~~ 162 (245)
+.+++...+..+|+-.+.+++..
T Consensus 30 liwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 30 LIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666655554433
No 80
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.72 E-value=5.7 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=27.9
Q ss_pred ccccceeccccccceEEccCCCcccchhhHhcc---CCCccccccccce
Q 025999 194 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQV 239 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~---~~CPiCR~~i~~~ 239 (245)
+...|+.|...-.. . |..+.|..|.... ..||-|.++++..
T Consensus 31 M~~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----D-NGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCCBCSSSCSBEEE----E-TTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred ccccCccCCCccee----c-CCEEECccccchhhccccCcchhhHHHHH
Confidence 44689999854322 2 3344488887766 4799999888764
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.55 E-value=9.9 Score=26.81 Aligned_cols=43 Identities=35% Similarity=0.736 Sum_probs=29.0
Q ss_pred cccceeccccccce----EEcc---CCCcccchhhHhcc-----CCCccccccccc
Q 025999 195 PDLCVICLEQEYNA----VFVP---CGHMCCCIICSWHL-----TNCPLCRRRIDQ 238 (245)
Q Consensus 195 ~~~C~iC~~~~~~~----v~~p---CgH~~~C~~C~~~~-----~~CPiCR~~i~~ 238 (245)
...|.||-+..-.. +|+- |+--. |..|+.-- +.||.|+++..+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv-CrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPA-CRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCC-CHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChh-hHHHHHHHHhccCccccccCCcccc
Confidence 35899999873221 4554 44443 89997543 689999988764
No 82
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.31 E-value=27 Score=28.58 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=24.3
Q ss_pred cCCcccccceeccccccc----eEEccCCCcccchhhHhc
Q 025999 190 RDRVMPDLCVICLEQEYN----AVFVPCGHMCCCIICSWH 225 (245)
Q Consensus 190 ~~~~~~~~C~iC~~~~~~----~v~~pCgH~~~C~~C~~~ 225 (245)
+...+...|.+|...+.- ----.||+++ |..|...
T Consensus 159 p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~-C~~Cs~~ 197 (226)
T 3zyq_A 159 PDWVDAEECHRCRVQFGVMTRKHHCRACGQIF-CGKCSSK 197 (226)
T ss_dssp CCCCCCSBCTTTCCBCBTTBCCEECTTTCCEE-CTTTCCE
T ss_pred cccccCCCCcCcCCCCCccccccccCCCcCEe-ChhhcCC
Confidence 334445689999876642 2334899999 9999764
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=32.83 E-value=28 Score=22.46 Aligned_cols=35 Identities=26% Similarity=0.766 Sum_probs=25.5
Q ss_pred cceeccccccceE-E--ccCCCcccchhhHh----ccCCCccc
Q 025999 197 LCVICLEQEYNAV-F--VPCGHMCCCIICSW----HLTNCPLC 232 (245)
Q Consensus 197 ~C~iC~~~~~~~v-~--~pCgH~~~C~~C~~----~~~~CPiC 232 (245)
.|.-|.....+.. + -.|++.| |.+|.. .+-.||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCB-CHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCc-ccchhHHHHhhccCCcCC
Confidence 5888888775433 3 3688888 999964 34689988
No 84
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.74 E-value=20 Score=23.72 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=22.8
Q ss_pred cccccceeccccccceEEccC-CCcccchhhHhcc
Q 025999 193 VMPDLCVICLEQEYNAVFVPC-GHMCCCIICSWHL 226 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pC-gH~~~C~~C~~~~ 226 (245)
++..-|.||.+. ...--+-| |-++ |..|...+
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLY-CARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHH
T ss_pred cCCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHH
Confidence 345589999988 34555688 6777 88997654
No 85
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=31.97 E-value=22 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=17.8
Q ss_pred EccCCCcccchhhHhccC-CCccccccccceee
Q 025999 210 FVPCGHMCCCIICSWHLT-NCPLCRRRIDQVVR 241 (245)
Q Consensus 210 ~~pCgH~~~C~~C~~~~~-~CPiCR~~i~~~~~ 241 (245)
-..|||++. ....| .||+|..+-..+.+
T Consensus 158 C~~CG~~~~----g~~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 158 CRNCGYVHE----GTGAPELCPACAHPKAHFEL 186 (191)
T ss_dssp ETTTCCEEE----EEECCSBCTTTCCBGGGEEE
T ss_pred ECCCCCEee----CCCCCCCCCCCcCCHHHHHh
Confidence 346788763 11333 89999988666543
No 86
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.75 E-value=22 Score=23.18 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=10.9
Q ss_pred chhhHhcc--CCCcccccccc
Q 025999 219 CIICSWHL--TNCPLCRRRID 237 (245)
Q Consensus 219 C~~C~~~~--~~CPiCR~~i~ 237 (245)
|..|..+. ++|+.|..+|.
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~ 26 (77)
T 2egq_A 6 SGDCYKNFVAKKCAGCKNPIT 26 (77)
T ss_dssp CTTCCCSCCCCCCSSSCCCCC
T ss_pred chhHhchhhCccCcccCCccc
Confidence 55555544 45666666665
No 87
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.22 E-value=5 Score=23.05 Aligned_cols=8 Identities=38% Similarity=1.356 Sum_probs=3.6
Q ss_pred Cccccccc
Q 025999 229 CPLCRRRI 236 (245)
Q Consensus 229 CPiCR~~i 236 (245)
||+|...+
T Consensus 8 CP~C~~~l 15 (34)
T 3mjh_B 8 CPQCMKSL 15 (34)
T ss_dssp CTTTCCEE
T ss_pred CcHHHHHc
Confidence 44444443
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.15 E-value=16 Score=22.95 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=7.8
Q ss_pred cccceecccc
Q 025999 195 PDLCVICLEQ 204 (245)
Q Consensus 195 ~~~C~iC~~~ 204 (245)
...|.+|...
T Consensus 9 ~~~C~vC~~~ 18 (56)
T 2yql_A 9 EDFCSVCRKS 18 (56)
T ss_dssp CCSCSSSCCS
T ss_pred CCCCccCCCC
Confidence 4479999975
No 89
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.47 E-value=22 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=18.1
Q ss_pred EccCCCcccchhhHhcc-CCCccccccccceee
Q 025999 210 FVPCGHMCCCIICSWHL-TNCPLCRRRIDQVVR 241 (245)
Q Consensus 210 ~~pCgH~~~C~~C~~~~-~~CPiCR~~i~~~~~ 241 (245)
-..|||++. ... ..||+|..+-..+.+
T Consensus 141 C~~CG~i~~-----~~~p~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 141 CPICGYTAV-----DEAPEYCPVCGAPKEKFVV 168 (170)
T ss_dssp CTTTCCEEE-----SCCCSBCTTTCCBGGGCEE
T ss_pred eCCCCCeeC-----CCCCCCCCCCCCCHHHcee
Confidence 346788773 123 389999988776654
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.74 E-value=34 Score=23.86 Aligned_cols=12 Identities=17% Similarity=0.678 Sum_probs=8.8
Q ss_pred ccccceeccccc
Q 025999 194 MPDLCVICLEQE 205 (245)
Q Consensus 194 ~~~~C~iC~~~~ 205 (245)
....|.+|...-
T Consensus 24 n~~~C~vC~~~g 35 (88)
T 1fp0_A 24 SATICRVCQKPG 35 (88)
T ss_dssp SSSCCSSSCSSS
T ss_pred CCCcCcCcCCCC
Confidence 345899999764
No 91
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=28.49 E-value=21 Score=27.80 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=15.0
Q ss_pred chhhHhcc--CCCccccccccc
Q 025999 219 CIICSWHL--TNCPLCRRRIDQ 238 (245)
Q Consensus 219 C~~C~~~~--~~CPiCR~~i~~ 238 (245)
|..|+.+. ++|..|..+|..
T Consensus 110 C~~~y~~~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 110 CKDDFFKRFGTKCAACQLGIPP 131 (182)
T ss_dssp CHHHHHHTTSCCCTTTCCCCCS
T ss_pred ecCccccccccccccCCCccCC
Confidence 66666554 689999998864
No 92
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.60 E-value=1.4e+02 Score=20.09 Aligned_cols=32 Identities=19% Similarity=0.014 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025999 128 ASFGLTIFGTFLIAKRAIHYILQRKRRWELHR 159 (245)
Q Consensus 128 ~~i~~~~~g~~ll~~~~~r~~~~~r~~~~~~~ 159 (245)
++++.+++.++++....+|.+..-..+++..+
T Consensus 15 ~gvi~gilliGllllliwk~~~~i~DrrE~~k 46 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHDRKEFAK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777778888877666665554
No 93
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.56 E-value=11 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=21.9
Q ss_pred cccceeccccccce----EEccCCCcccchhhHhc
Q 025999 195 PDLCVICLEQEYNA----VFVPCGHMCCCIICSWH 225 (245)
Q Consensus 195 ~~~C~iC~~~~~~~----v~~pCgH~~~C~~C~~~ 225 (245)
...|.+|...+... ---.||++| |..|+..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf-C~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF-CAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE-ChHHhCC
Confidence 34799999876532 224899999 9999764
No 94
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.25 E-value=29 Score=22.12 Aligned_cols=10 Identities=20% Similarity=0.866 Sum_probs=7.4
Q ss_pred cccceecccc
Q 025999 195 PDLCVICLEQ 204 (245)
Q Consensus 195 ~~~C~iC~~~ 204 (245)
...|.+|.+.
T Consensus 9 ~~~C~vC~~~ 18 (61)
T 1mm2_A 9 MEFCRVCKDG 18 (61)
T ss_dssp CSSCTTTCCC
T ss_pred CCcCCCCCCC
Confidence 4479999864
No 95
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.19 E-value=17 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=8.5
Q ss_pred chhhHhcc--CCCcccccccc
Q 025999 219 CIICSWHL--TNCPLCRRRID 237 (245)
Q Consensus 219 C~~C~~~~--~~CPiCR~~i~ 237 (245)
|..|+.++ ++|..|..+|.
T Consensus 6 C~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 6 SGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCSCBCTTTCCBCC
T ss_pred chhHhCcccCCcCccCCCccc
Confidence 44444433 34445544444
No 96
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.66 E-value=20 Score=23.62 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=4.8
Q ss_pred CCcccccccc
Q 025999 228 NCPLCRRRID 237 (245)
Q Consensus 228 ~CPiCR~~i~ 237 (245)
+|-.|..++.
T Consensus 43 ~C~~C~~~L~ 52 (80)
T 2cuq_A 43 VCTGCQTPLA 52 (80)
T ss_dssp BCSSSCCBCT
T ss_pred CcccCCCcCC
Confidence 3455555543
No 97
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.58 E-value=22 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.770 Sum_probs=13.4
Q ss_pred ccCCCcccchhhHhcc---CCCcccccc
Q 025999 211 VPCGHMCCCIICSWHL---TNCPLCRRR 235 (245)
Q Consensus 211 ~pCgH~~~C~~C~~~~---~~CPiCR~~ 235 (245)
..||+.| + ..+ ..||.|++.
T Consensus 71 ~~CG~~F-~----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVF-K----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBC-C----CCSSCCSSCSSSCCC
T ss_pred hhCcCee-c----ccCCCCCCCcCCCCC
Confidence 3688887 2 222 489999864
No 98
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=26.51 E-value=27 Score=31.06 Aligned_cols=43 Identities=26% Similarity=0.584 Sum_probs=30.3
Q ss_pred ccccceeccccccceE-EccCCCcccchhhHh--------ccCCCcccccccc
Q 025999 194 MPDLCVICLEQEYNAV-FVPCGHMCCCIICSW--------HLTNCPLCRRRID 237 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CPiCR~~i~ 237 (245)
....|++-+.+...++ ...|.|+- |++-.. ....||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCcccC
Confidence 3458999988877764 45899997 665521 1148999988763
No 99
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.11 E-value=26 Score=26.90 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=29.5
Q ss_pred ccceeccccccceEEccCCCcccchhhHhcc--CCCccccccccc
Q 025999 196 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 238 (245)
Q Consensus 196 ~~C~iC~~~~~~~v~~pCgH~~~C~~C~~~~--~~CPiCR~~i~~ 238 (245)
..|..|...-....|..=|..+ |..|+... ++|..|..+|..
T Consensus 34 F~C~~C~~~L~~~~f~~~g~~y-C~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 34 LKCSDCHVPLAERCFSRGESVY-CKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp SBCTTTCCBCCSCCEESSSCEE-CHHHHHHHHSCBCTTTCCBCCT
T ss_pred CccCCCCCcCCCCCcccCCeee-ecccccccccccccccccccCC
Confidence 3666676554443355556676 99998776 789999998864
No 100
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=25.89 E-value=7.6 Score=26.03 Aligned_cols=31 Identities=32% Similarity=0.687 Sum_probs=23.8
Q ss_pred cccceeccccccceE-----EccCCCcccchhhHhcc
Q 025999 195 PDLCVICLEQEYNAV-----FVPCGHMCCCIICSWHL 226 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v-----~~pCgH~~~C~~C~~~~ 226 (245)
++.|.+|-..+.+.+ -++|.-.. |..|+.++
T Consensus 5 g~~C~kCEq~~vn~~DqelHdlnCs~Ni-CPYC~nRl 40 (77)
T 2l7x_A 5 PQTCTICETTPVNAIDAEMHDLNCSYNI-CPYCASRL 40 (77)
T ss_dssp CCCCTTTCCCCSSHHHHHHHHHHHTTTC-CTTTCCCC
T ss_pred CceeeeeccccccHHHHHHHHcCCCccc-ChhhhccC
Confidence 458999988777653 25898887 99998877
No 101
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.68 E-value=38 Score=24.50 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.5
Q ss_pred cccceeccccccceEEccCCCcccch
Q 025999 195 PDLCVICLEQEYNAVFVPCGHMCCCI 220 (245)
Q Consensus 195 ~~~C~iC~~~~~~~v~~pCgH~~~C~ 220 (245)
...|..|.......+-+-|||+. |.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vg-Cg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVY-CG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEE-EC
T ss_pred CCcCccccCCCCeeeeeecCccc-cC
Confidence 44799999988888899999999 74
No 102
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=25.60 E-value=58 Score=27.63 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=49.5
Q ss_pred ceeeeeeEEeecCccc--ccccccccccceeeeceeeeecccCCCceeEEeEeEEecCCCCeEEeCCCCC----CeEEec
Q 025999 35 FVLTVGSEVFEESGRS--LVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKG----PFYVSP 108 (245)
Q Consensus 35 ~~~~~~~~~f~~~~~s--~~~~~~~~~~g~~~~G~~~~E~~L~~G~~lt~vGe~~~d~~g~~~iq~P~~g----~f~ls~ 108 (245)
..+.++.|..|..+.+ ..+.+..++. ..|+...-+.|++|..+-++-.-..+..|. ..+|... +|.+..
T Consensus 18 ~~~~ivvD~RE~~~~~~~~~~~~~~~l~---~~gv~~~~~~L~vGDyiw~~~~~~~~~~~~--~~~~~~~e~vl~~~VER 92 (311)
T 2ziu_A 18 YDIVLCVDLCETTGGSSVRKQELVKELQ---RNSVTFDVRKLNVGDFLWVARERVTPVPGQ--LRPPVGKELVLDYIIER 92 (311)
T ss_dssp EEEEEEECGGGSCC-----CCHHHHHHH---TTTCCEECCCCSSCSEEEEEEECCCCCTTC--SSCCCCCEEEEEEEEEE
T ss_pred cEEEEEEECccccCCccchHHHHHHHHH---HCCCCeEEEecCccCEEEEEecCCCccccc--cccccCceeeeeeEeEe
Confidence 4577777777755432 3333444443 369999999999999986543311111111 1222222 488889
Q ss_pred CChHHHHHHhhhh
Q 025999 109 KTIDELIENLGKW 121 (245)
Q Consensus 109 ~s~~~Li~~l~~~ 121 (245)
++.++|+.++.+.
T Consensus 93 K~~~Dl~~Si~dg 105 (311)
T 2ziu_A 93 KRMDDLCGSIIDG 105 (311)
T ss_dssp EEHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcc
Confidence 9999999887653
No 103
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.32 E-value=27 Score=25.20 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=29.5
Q ss_pred ccceeccccccce-EEccCCCcccchhhHhcc--CCCccccccccc
Q 025999 196 DLCVICLEQEYNA-VFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 238 (245)
Q Consensus 196 ~~C~iC~~~~~~~-v~~pCgH~~~C~~C~~~~--~~CPiCR~~i~~ 238 (245)
..|..|....... .+..=|..+ |..|+... ++|+.|..+|..
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~y-C~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPV-CKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEE-EHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcCEEEeECCEEe-chHHhCcCcCccCcccCCcCCc
Confidence 3666666554432 233456676 99999876 799999999984
No 104
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.02 E-value=25 Score=25.51 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=28.9
Q ss_pred cceecccccc---ceEEccCCCcccchhhHhcc--C--CCccccccccc
Q 025999 197 LCVICLEQEY---NAVFVPCGHMCCCIICSWHL--T--NCPLCRRRIDQ 238 (245)
Q Consensus 197 ~C~iC~~~~~---~~v~~pCgH~~~C~~C~~~~--~--~CPiCR~~i~~ 238 (245)
.|..|...-. ...+..=|..+ |..|+... + +|..|..+|..
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~y-C~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMIL-CRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEE-CHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCeee-cHHHHHHHcCCCCccccCCCCcCc
Confidence 6666665543 22344556677 99999876 5 89999999985
No 105
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=24.93 E-value=30 Score=30.64 Aligned_cols=43 Identities=19% Similarity=0.433 Sum_probs=30.7
Q ss_pred ccccceeccccccceE-EccCCCcccchhhHhc--------cCCCcccccccc
Q 025999 194 MPDLCVICLEQEYNAV-FVPCGHMCCCIICSWH--------LTNCPLCRRRID 237 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v-~~pCgH~~~C~~C~~~--------~~~CPiCR~~i~ 237 (245)
....|++-+.+...++ ...|.|+- |.+-..= ...||+|...+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3458999988887765 45899997 6665321 148999998764
No 106
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.40 E-value=24 Score=24.38 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=27.5
Q ss_pred cceeccccccce-EEccCCCcccchhhHhcc--CCCcccccccc
Q 025999 197 LCVICLEQEYNA-VFVPCGHMCCCIICSWHL--TNCPLCRRRID 237 (245)
Q Consensus 197 ~C~iC~~~~~~~-v~~pCgH~~~C~~C~~~~--~~CPiCR~~i~ 237 (245)
.|..|...-... .+..=|..+ |..|+.++ ++|..|..+|.
T Consensus 35 ~C~~C~~~L~~~~~~~~~g~~y-C~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANETFVAKDNKIL-CNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSSCCEEETTEEE-CHHHHTTCCCCBCSSSCCBCC
T ss_pred cccccCCCCCcCeeECcCCEEE-ChhHhhhhcCCccccCCCccc
Confidence 566665544332 223346666 99999877 79999999998
No 107
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=22.62 E-value=45 Score=33.43 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=37.9
Q ss_pred cccccceeccccccceEEccCCC-cccchhhHhcc----CCCccccccccc
Q 025999 193 VMPDLCVICLEQEYNAVFVPCGH-MCCCIICSWHL----TNCPLCRRRIDQ 238 (245)
Q Consensus 193 ~~~~~C~iC~~~~~~~v~~pCgH-~~~C~~C~~~~----~~CPiCR~~i~~ 238 (245)
.+...|+|-++--+++|++|.|| .+ =..++.+| .+||+-|+++..
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~Ty-dR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNI-DRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEE-CHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34669999999999999999986 55 68888877 589999998865
No 108
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.60 E-value=24 Score=25.23 Aligned_cols=6 Identities=33% Similarity=0.988 Sum_probs=3.2
Q ss_pred cceecc
Q 025999 197 LCVICL 202 (245)
Q Consensus 197 ~C~iC~ 202 (245)
.|++|-
T Consensus 49 ~CPvCg 54 (112)
T 1l8d_A 49 KCPVCG 54 (112)
T ss_dssp ECTTTC
T ss_pred CCCCCC
Confidence 455553
No 109
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.81 E-value=42 Score=21.35 Aligned_cols=39 Identities=21% Similarity=0.623 Sum_probs=20.3
Q ss_pred ccccceeccccccceEE-ccCCCcccchhhHhc----c----CCCccccc
Q 025999 194 MPDLCVICLEQEYNAVF-VPCGHMCCCIICSWH----L----TNCPLCRR 234 (245)
Q Consensus 194 ~~~~C~iC~~~~~~~v~-~pCgH~~~C~~C~~~----~----~~CPiCR~ 234 (245)
....|.+|.... +.++ -.|...| ...|... . -.||.|..
T Consensus 10 ~~~~C~vC~~~g-~ll~CD~C~~~f-H~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQGG-EIILCDTCPRAY-HMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCCS-SEEECSSSSCEE-EHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCCC-cEEECCCCChhh-hhhccCCCCCCCCCCceECccccc
Confidence 345799998742 2222 1233333 3445432 1 26999965
No 110
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.70 E-value=45 Score=21.99 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=20.6
Q ss_pred ccceeccccccce----EEccCCCcccchhhHh
Q 025999 196 DLCVICLEQEYNA----VFVPCGHMCCCIICSW 224 (245)
Q Consensus 196 ~~C~iC~~~~~~~----v~~pCgH~~~C~~C~~ 224 (245)
..|.+|...+... ---.||+++ |..|+.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~-C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF-CQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE-CGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEE-cccccC
Confidence 4799999876431 224799999 999975
No 111
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=20.46 E-value=41 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.6
Q ss_pred cccCCCceeEEeEeEEecC-CCCeEEeCCC
Q 025999 72 RLLPTGTSLTVVGEAVKDD-IGTVRIQRPH 100 (245)
Q Consensus 72 ~~L~~G~~lt~vGe~~~d~-~g~~~iq~P~ 100 (245)
+.|-.|+-.|+||++-.-. .-.+++|.|+
T Consensus 101 ealsngsvativgqvhqvqdstiptlqnpk 130 (133)
T 3f1z_A 101 EALSNGSVATIVGQVHQVQDSTIPTLQNPK 130 (133)
T ss_dssp TTCCTTSEEEEEEECCCCCSBSSCEEEEEE
T ss_pred HhhcCCceeeEeeeeeeeeccccccccCCc
Confidence 6789999999999973322 3457888775
No 112
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=20.23 E-value=40 Score=23.34 Aligned_cols=42 Identities=21% Similarity=0.491 Sum_probs=27.9
Q ss_pred cccceeccccccc----eEEccCCCcccchhhHhcc----------CCCcccccccc
Q 025999 195 PDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----------TNCPLCRRRID 237 (245)
Q Consensus 195 ~~~C~iC~~~~~~----~v~~pCgH~~~C~~C~~~~----------~~CPiCR~~i~ 237 (245)
...|.+|...+.. -.--.||+++ |..|.... ..|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~-C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF-CGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE-CCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 3479999976642 2334899999 99997653 35666654443
Done!