BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026000
         (245 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
          Length = 540

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 147 GMGIKQGKTYKVVFYIRSLG--------SVNILVSLTSSNGLQTLATSNIIASASDVSNW 198
           G  +  G  YK   +++  G        SV+ L S T     + +AT +++A       W
Sbjct: 77  GFYLDGGVEYKYSVFVKHNGTGTETFKLSVSYLDSETEEENKEVIATKDVVAGE-----W 131

Query: 199 TRVETLLEAKETNPNARLQLTTSRKGVIWFDQVS 232
           T +    +A +T  N  L +TT       FD V+
Sbjct: 132 TEISAKYKAPKTAVNITLSITTDSTVDFIFDDVT 165


>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
           Xylanas Xylohexaose
 pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
           Xylanas Xylohexaose
          Length = 540

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 147 GMGIKQGKTYKVVFYIRSLG--------SVNILVSLTSSNGLQTLATSNIIASASDVSNW 198
           G  +  G  YK   +++  G        SV+ L S T     + +AT +++A       W
Sbjct: 77  GFYLDGGVEYKYSVFVKHNGTGTETFKLSVSYLDSETEEENKEVIATKDVVAGE-----W 131

Query: 199 TRVETLLEAKETNPNARLQLTTSRKGVIWFDQVS 232
           T +    +A +T  N  L +TT       FD V+
Sbjct: 132 TEISAKYKAPKTAVNITLSITTDSTVDFIFDDVT 165


>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
           E. Coli K-12 Yqhd
 pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
           E. Coli K-12 Yqhd
 pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
           E. Coli K-12 Yqhd
 pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
           E. Coli K-12 Yqhd
          Length = 408

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query: 79  FEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSC 111
           F A   N P NIDPW I+      I S     C
Sbjct: 124 FIAAAANYPENIDPWHILQTGGKEIKSAIPMGC 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,786,876
Number of Sequences: 62578
Number of extensions: 252817
Number of successful extensions: 473
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 3
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)