Query 026000
Match_columns 245
No_of_seqs 122 out of 346
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02018 CBM_4_9: Carbohydrate 99.4 9.9E-12 2.1E-16 97.4 16.9 125 71-221 1-127 (131)
2 PF04862 DUF642: Protein of un 98.6 3.9E-06 8.5E-11 70.4 16.2 136 72-233 1-158 (159)
3 PLN03089 hypothetical protein; 98.3 2E-05 4.3E-10 74.4 14.1 143 71-236 194-365 (373)
4 PLN03089 hypothetical protein; 98.1 0.00012 2.6E-09 69.3 14.2 136 72-234 28-184 (373)
5 PF03422 CBM_6: Carbohydrate b 96.2 0.061 1.3E-06 42.1 9.7 84 146-233 37-123 (125)
6 smart00606 CBD_IV Cellulose Bi 95.5 0.19 4.2E-06 39.6 10.1 84 145-232 44-128 (129)
7 PF15425 DUF4627: Domain of un 94.0 0.63 1.4E-05 40.2 9.7 149 68-233 2-210 (212)
8 cd06263 MAM Meprin, A5 protein 93.7 0.75 1.6E-05 37.2 9.6 78 155-236 72-155 (157)
9 PF03425 CBM_11: Carbohydrate 93.6 1.7 3.6E-05 36.7 11.8 79 154-237 72-171 (178)
10 PF00629 MAM: MAM domain; Int 93.2 1.2 2.5E-05 35.3 9.9 79 152-236 70-156 (160)
11 smart00137 MAM Domain in mepri 93.2 0.97 2.1E-05 37.2 9.6 107 116-236 47-159 (161)
12 PF10648 Gmad2: Immunoglobulin 88.1 7.8 0.00017 29.3 9.4 63 155-220 17-80 (88)
13 COG3534 AbfA Alpha-L-arabinofu 86.9 0.11 2.4E-06 50.5 -1.7 36 36-71 3-39 (501)
14 PF04620 FlaA: Flagellar filam 79.5 44 0.00096 29.6 12.8 57 147-208 100-157 (217)
15 PF01835 A2M_N: MG2 domain; I 78.2 25 0.00055 26.1 10.0 66 151-222 12-85 (99)
16 PF13313 DUF4082: Domain of un 76.6 20 0.00042 30.1 8.2 81 158-241 36-144 (149)
17 PF14299 PP2: Phloem protein 2 73.4 51 0.0011 27.2 11.4 86 149-235 55-153 (154)
18 PF15432 Sec-ASP3: Accessory S 72.5 51 0.0011 26.8 10.6 75 150-235 50-126 (128)
19 PF11141 DUF2914: Protein of u 72.3 17 0.00037 25.9 6.0 41 148-190 23-65 (66)
20 PF06030 DUF916: Bacterial pro 71.1 51 0.0011 26.3 9.4 34 143-176 16-51 (121)
21 PF07172 GRP: Glycine rich pro 70.9 2.6 5.6E-05 32.6 1.5 25 1-30 1-27 (95)
22 PF09092 Lyase_N: Lyase, N ter 67.1 82 0.0018 27.1 12.1 127 90-235 17-163 (178)
23 PF10670 DUF4198: Domain of un 65.7 32 0.0007 28.8 7.5 63 169-235 152-214 (215)
24 cd00918 Der-p2_like Several gr 55.1 21 0.00045 28.5 4.2 33 147-179 72-109 (120)
25 PF11614 FixG_C: IG-like fold 54.4 98 0.0021 23.8 8.3 55 115-179 45-105 (118)
26 PF08770 SoxZ: Sulphur oxidati 52.4 61 0.0013 25.0 6.3 33 146-180 60-92 (100)
27 PF09212 CBM27: Carbohydrate b 47.1 47 0.001 28.3 5.3 110 115-234 42-168 (170)
28 PF04300 FBA: F-box associated 44.0 1.4E+02 0.003 25.6 7.8 70 137-207 70-147 (184)
29 PRK15036 hydroxyisourate hydro 43.3 52 0.0011 27.0 4.8 46 169-218 28-73 (137)
30 cd06480 ACD_HspB8_like Alpha-c 43.1 1.5E+02 0.0032 22.6 7.3 80 148-229 9-88 (91)
31 PF14785 MalF_P2: Maltose tran 42.0 42 0.00091 28.5 4.2 37 152-191 17-53 (164)
32 cd00916 Npc2_like Niemann-Pick 40.9 61 0.0013 25.7 4.8 36 147-183 76-116 (123)
33 PF14683 CBM-like: Polysacchar 40.2 94 0.002 26.1 6.1 78 154-233 78-167 (167)
34 TIGR03711 acc_sec_asp3 accesso 38.4 2.3E+02 0.0049 23.4 9.8 38 150-188 61-100 (135)
35 PF04151 PPC: Bacterial pre-pe 37.9 1.1E+02 0.0023 21.3 5.3 19 211-229 49-67 (70)
36 PF11395 DUF2873: Protein of u 37.3 26 0.00056 22.7 1.7 10 17-26 25-34 (43)
37 PF10633 NPCBM_assoc: NPCBM-as 36.1 1.6E+02 0.0034 20.9 9.3 67 150-220 1-73 (78)
38 smart00737 ML Domain involved 36.0 65 0.0014 24.7 4.2 36 147-183 71-111 (118)
39 PF00394 Cu-oxidase: Multicopp 33.6 2.6E+02 0.0056 22.7 8.7 68 144-220 58-135 (159)
40 PF07705 CARDB: CARDB; InterP 32.7 1.9E+02 0.004 20.7 10.4 68 150-223 15-86 (101)
41 PF13715 DUF4480: Domain of un 30.9 2E+02 0.0043 20.5 6.0 19 173-191 5-23 (88)
42 cd04036 C2_cPLA2 C2 domain pre 30.7 2.4E+02 0.0052 21.3 7.2 60 158-220 54-115 (119)
43 PLN03207 stomagen; Provisional 30.7 34 0.00074 26.8 1.7 15 5-19 9-23 (113)
44 PF11456 DUF3019: Protein of u 30.2 1.3E+02 0.0027 23.4 4.9 24 168-191 63-86 (102)
45 COG3906 Uncharacterized protei 27.9 1.8E+02 0.004 22.9 5.4 66 171-239 15-85 (105)
46 PF04744 Monooxygenase_B: Mono 27.9 2E+02 0.0043 27.7 6.6 58 146-207 79-139 (381)
47 PF10365 DUF2436: Domain of un 27.8 1.1E+02 0.0023 25.6 4.3 32 134-165 118-155 (161)
48 PF10836 DUF2574: Protein of u 27.0 50 0.0011 25.3 2.0 32 18-52 7-38 (93)
49 PF13620 CarboxypepD_reg: Carb 26.9 1.1E+02 0.0023 21.5 3.8 10 210-219 34-43 (82)
50 PF02221 E1_DerP2_DerF2: ML do 24.2 3.3E+02 0.0072 20.8 6.9 41 147-188 85-130 (134)
51 PF15541 Toxin_63: Putative to 24.0 24 0.00053 27.3 -0.1 11 72-82 31-41 (104)
52 PF08547 CIA30: Complex I inte 23.9 3.9E+02 0.0085 21.6 10.2 47 157-207 70-117 (157)
53 PF07353 Uroplakin_II: Uroplak 22.8 4.2E+02 0.009 22.7 6.9 61 141-219 100-160 (184)
54 PLN02991 oxidoreductase 22.8 5.6E+02 0.012 25.8 9.1 77 137-219 191-278 (543)
55 PF04393 DUF535: Protein of un 22.6 1.7E+02 0.0036 26.8 5.0 57 147-206 103-161 (288)
56 PRK13211 N-acetylglucosamine-b 22.4 7.7E+02 0.017 24.5 9.8 44 157-205 330-373 (478)
57 cd05755 Ig2_ICAM-1_like Second 22.0 3.7E+02 0.008 20.6 7.1 65 150-217 13-78 (100)
58 PF11164 DUF2948: Protein of u 21.9 1.9E+02 0.0042 23.8 4.7 30 200-230 87-116 (138)
59 COG4724 Endo-beta-N-acetylgluc 21.6 5.3E+02 0.011 25.4 8.2 97 115-225 440-536 (553)
60 COG3126 Uncharacterized protei 21.3 2.9E+02 0.0063 23.4 5.7 73 153-228 42-124 (158)
61 TIGR03079 CH4_NH3mon_ox_B meth 21.1 1.3E+02 0.0028 29.0 4.0 37 146-182 99-137 (399)
62 COG2373 Large extracellular al 21.0 4.3E+02 0.0093 30.4 8.5 62 147-215 403-470 (1621)
63 COG4744 Uncharacterized conser 20.9 72 0.0016 25.6 1.9 52 17-68 39-91 (121)
64 PLN02792 oxidoreductase 20.8 6.1E+02 0.013 25.4 8.9 67 147-219 194-269 (536)
65 PF13201 Xylanase: Putative gl 20.6 1.7E+02 0.0037 27.5 4.8 86 146-233 207-341 (342)
66 PLN00115 pollen allergen group 20.5 3.5E+02 0.0077 21.6 5.9 20 167-186 81-100 (118)
67 PF08530 PepX_C: X-Pro dipepti 20.2 5.3E+02 0.011 21.7 8.1 66 157-222 99-179 (218)
No 1
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=99.45 E-value=9.9e-12 Score=97.39 Aligned_cols=125 Identities=22% Similarity=0.404 Sum_probs=87.5
Q ss_pred hhhhcCCCcccCCCCCCCCCCCceEecCCeeEEEecCCCCcccCCcceEEEEEecCCCCccccCCCceEEEccCccceec
Q 026000 71 AELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGI 150 (245)
Q Consensus 71 AELi~NRsFE~~~~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi~v 150 (245)
+|||+|++||.. .+.+|...+... .....+.. ...++|+|.-... ....-+.+ .++.|
T Consensus 1 ~nli~N~~Fe~~------~~~~W~~~~~~~-~~~~~~~~----~g~~~l~v~~~~~--------~~~~~~~~---~~~~l 58 (131)
T PF02018_consen 1 GNLIKNGGFEDG------GLSGWSFWGNSG-ASASVDNA----SGNYSLKVSNRSA--------TWDGQSQQ---QTISL 58 (131)
T ss_dssp GBSSSSTTSTTT------STTTEEEESSTT-EEEEEEEC----SSSEEEEEECCSS--------GCGEEEEE---EEEEE
T ss_pred CCEEECCCccCC------CCCCCEEccCCC-EEEEEEcC----CCeEEEEEECCCC--------Ccccccee---cceEe
Confidence 489999999973 478999987663 22222211 3456776653211 11222333 45999
Q ss_pred ccCCEEEEEEEEEeCCCeeEEEEEEeCCC-C-eeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeC
Q 026000 151 KQGKTYKVVFYIRSLGSVNILVSLTSSNG-L-QTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTS 221 (245)
Q Consensus 151 ~~G~tY~~Sf~ar~~~~~~vtV~L~~~~g-~-~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~ 221 (245)
++|++|++|||+|.+...++.+++...++ . ..+....+.. .++|++|+++|+++.+....+|.|.+.
T Consensus 59 ~~G~~Y~~s~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~W~~~s~~ft~~~~~~~~~l~~~~~ 127 (131)
T PF02018_consen 59 KPGKTYTVSFWVKADSGGTVSVSLRDEDGSPYNWYTGQTVTI----TGEWTKYSGTFTAPSDDDTVRLYFEIG 127 (131)
T ss_dssp -TTSEEEEEEEEEESSSEEEEEEEEESSTTTEEEEEEEEEEE----TSSEEEEEEEEEEESSCEEEEEEEEES
T ss_pred cCCCEEEEEEEEEeCCCCEEEEEEEEcCCCCcEEEEEEEEEC----CCCcEEEEEEEEECCCCceEEEEEEec
Confidence 99999999999999877889999998876 2 2333334443 589999999999998888999998873
No 2
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=98.59 E-value=3.9e-06 Score=70.36 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=82.2
Q ss_pred hhhcCCCcccCCCC----------CCCCCCCceEecCCeeEEEecCCCC-----cccCCcceEEEEEecCCCCccccCCC
Q 026000 72 ELVSNRGFEAGGQN----------IPSNIDPWAIIGNDSSLIVSTDRSS-----CFERNKVALRMEVLCDSQGTNICPVG 136 (245)
Q Consensus 72 ELi~NRsFE~~~~~----------~~~~~~~W~~~g~~~~~~~~~~~~~-----~~~~n~~sl~v~v~~~~~~~~~~~~~ 136 (245)
.||+|.+||..+.. ..+++.+|...+.. -.+...... ..+...++++| . .
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~V--e~i~~~~~~g~~~~~~p~G~~aveL---g----------~ 65 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSV--EYIDSGHFQGGMYFAVPEGKQAVEL---G----------N 65 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEE--EEEecCCccCceeeeCCCCceEEEc---C----------C
Confidence 38999999998642 12468899886542 122222111 12456777766 1 1
Q ss_pred ceEEEccCccceecccCCEEEEEEEEEeC--CCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcc
Q 026000 137 GVGVYNPGYWGMGIKQGKTYKVVFYIRSL--GSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNA 214 (245)
Q Consensus 137 ~~gi~N~Gy~Gi~v~~G~tY~~Sf~ar~~--~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a 214 (245)
...|.| -+...+|++|.++|.+... ....+.|+.... ....+.-++. .....|++|++.|+| .. ...
T Consensus 66 ~~~I~Q----~~~t~~G~~Y~LtF~~~~~~~~~~~l~V~v~~~-~~~~~~~~~~----~~~~~w~~~s~~F~A-~~-t~~ 134 (159)
T PF04862_consen 66 EGSISQ----TFTTVPGSTYTLTFSLARNCAQSESLSVSVGGQ-FSFVVTIQTS----YGSGGWDTYSFTFTA-SS-TRI 134 (159)
T ss_pred CceEEE----EEEccCCCEEEEEEEecCCCCCCccEEEEEecc-cceEEEeecc----CCCCCcEEEEEEEEe-CC-CEE
Confidence 234887 7889999999999999742 223577776653 2122211111 123469999999999 43 666
Q ss_pred eEEEEeCC-----CeEEEEeEEee
Q 026000 215 RLQLTTSR-----KGVIWFDQVSA 233 (245)
Q Consensus 215 ~L~I~~~~-----~G~v~lD~VSL 233 (245)
+|.+...+ .---.||-|++
T Consensus 135 ~l~f~~~~~~~d~~cGp~iDnV~v 158 (159)
T PF04862_consen 135 TLTFHNPGMESDSACGPVIDNVSV 158 (159)
T ss_pred EEEEECCCccCCCCceeEEEEEEe
Confidence 77765442 12345777765
No 3
>PLN03089 hypothetical protein; Provisional
Probab=98.28 E-value=2e-05 Score=74.44 Aligned_cols=143 Identities=18% Similarity=0.284 Sum_probs=89.9
Q ss_pred hhhhcCCCcccCCC---C-------------CCCCCCCceEecCCeeEEEecCCCCcccCCcceEEEEEecCCCCccccC
Q 026000 71 AELVSNRGFEAGGQ---N-------------IPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICP 134 (245)
Q Consensus 71 AELi~NRsFE~~~~---~-------------~~~~~~~W~~~g~~~~~~~~~~~~~~~~~n~~sl~v~v~~~~~~~~~~~ 134 (245)
+.||+|.+||..+. + .-+++.+|.+......-.++... ...++..++++|. .
T Consensus 194 ~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h-~~vp~G~~aveL~--~--------- 261 (373)
T PLN03089 194 DNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAH-FSVPEGKRAVELV--S--------- 261 (373)
T ss_pred cceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCc-ccCCCCceEEEec--c---------
Confidence 47999999999752 1 12478999974433222333332 2234567787763 2
Q ss_pred CCceEEEccCccceecccCCEEEEEEEEEeC---CCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCC
Q 026000 135 VGGVGVYNPGYWGMGIKQGKTYKVVFYIRSL---GSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETN 211 (245)
Q Consensus 135 ~~~~gi~N~Gy~Gi~v~~G~tY~~Sf~ar~~---~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~ 211 (245)
....+|.| =+...+|++|+++|.+=.. -.+.+.|.....+. ...+.......+.|++++++|+|+.+.
T Consensus 262 g~e~aI~Q----~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~-----~~~v~~~s~g~gg~~~~s~~F~A~s~~ 332 (373)
T PLN03089 262 GKESAIAQ----VVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKD-----TQKVPYESQGKGGFKRASLRFKAVSNR 332 (373)
T ss_pred CCcceEEE----EEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecc-----cceEEEecCCCcceEEEEEEEEeccCC
Confidence 23457887 7889999999999997432 23455565443332 122222223456899999999987543
Q ss_pred CcceEEEEeC-------CCeEEE---EeEEeecCC
Q 026000 212 PNARLQLTTS-------RKGVIW---FDQVSAMPL 236 (245)
Q Consensus 212 ~~a~L~I~~~-------~~G~v~---lD~VSLfP~ 236 (245)
.|+.+... ..+.++ ||-|+|.+-
T Consensus 333 --Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~ 365 (373)
T PLN03089 333 --TRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPV 365 (373)
T ss_pred --EEEEEEEeecccccCcCCCcccceeeeEEEEEc
Confidence 36666431 237777 999999985
No 4
>PLN03089 hypothetical protein; Provisional
Probab=98.05 E-value=0.00012 Score=69.25 Aligned_cols=136 Identities=17% Similarity=0.267 Sum_probs=82.6
Q ss_pred hhhcCCCcccCCCCC---------CCCCCCceEecCCeeEEEecCCC-----CcccCCcceEEEEEecCCCCccccCCCc
Q 026000 72 ELVSNRGFEAGGQNI---------PSNIDPWAIIGNDSSLIVSTDRS-----SCFERNKVALRMEVLCDSQGTNICPVGG 137 (245)
Q Consensus 72 ELi~NRsFE~~~~~~---------~~~~~~W~~~g~~~~~~~~~~~~-----~~~~~n~~sl~v~v~~~~~~~~~~~~~~ 137 (245)
.||+|.+||..+... .+++.+|.+.+.. -.+..... -..++..|++++ + ..
T Consensus 28 nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~V--eyI~s~~~~~~m~~~vP~G~~Av~L----G---------~e 92 (373)
T PLN03089 28 GLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFV--EYISSGQKQGGMLLVVPEGAHAVRL----G---------NE 92 (373)
T ss_pred CeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcE--EEEeCCCccCceeEECCCCchhhhc----C---------CC
Confidence 599999999986322 2368899965421 12222210 122455677765 1 23
Q ss_pred eEEEccCccceecccCCEEEEEEEEEeC--CCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcce
Q 026000 138 VGVYNPGYWGMGIKQGKTYKVVFYIRSL--GSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNAR 215 (245)
Q Consensus 138 ~gi~N~Gy~Gi~v~~G~tY~~Sf~ar~~--~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~ 215 (245)
..|.| -|.+.+|..|.++|.+... ....|.|+.... . .++--++.. ..++|++|...|+|..+ ..+
T Consensus 93 ~sI~Q----~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~-~-~~~~~qt~~----~~~gw~~~s~~F~A~s~--~t~ 160 (373)
T PLN03089 93 ASISQ----TLTVTKGSYYSLTFSAARTCAQDESLNVSVPPE-S-GVLPLQTLY----SSSGWDSYAWAFKAESD--VVN 160 (373)
T ss_pred ceEEE----EEEccCCCEEEEEEEecCCCCCCceEEEEecCC-C-cEEeeEEec----cCCCcEEEEEEEEEecc--cEE
Confidence 56887 7889999999999999632 234466665443 2 333322221 25799999999998644 357
Q ss_pred EEEEeCC---CeEE--EEeEEeec
Q 026000 216 LQLTTSR---KGVI--WFDQVSAM 234 (245)
Q Consensus 216 L~I~~~~---~G~v--~lD~VSLf 234 (245)
|.|...+ +... -||-|++-
T Consensus 161 l~F~~~~~~~D~~CGPviD~VaIk 184 (373)
T PLN03089 161 LVFHNPGVEEDPACGPLIDAVAIK 184 (373)
T ss_pred EEEECcccCCCCcccceeeeEEEe
Confidence 7765222 3223 37887764
No 5
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=96.18 E-value=0.061 Score=42.05 Aligned_cols=84 Identities=12% Similarity=0.199 Sum_probs=58.0
Q ss_pred cceecccCCEEEEEEEEEeCCC-eeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeCCCe
Q 026000 146 WGMGIKQGKTYKVVFYIRSLGS-VNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKG 224 (245)
Q Consensus 146 ~Gi~v~~G~tY~~Sf~ar~~~~-~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~~G 224 (245)
..+.+.++-+|.+.+.+..... +.++|.+-+.+| +.+++..++.. .....|+..+..+...+ ....|.|.+.+.+
T Consensus 37 ~~Vd~~~~g~y~~~~~~a~~~~~~~~~l~id~~~g-~~~~~~~~~~t-g~w~~~~~~~~~v~l~~--G~h~i~l~~~~~~ 112 (125)
T PF03422_consen 37 NNVDVPEAGTYTLTIRYANGGGGGTIELRIDGPDG-TLIGTVSLPPT-GGWDTWQTVSVSVKLPA--GKHTIYLVFNGGD 112 (125)
T ss_dssp EEEEESSSEEEEEEEEEEESSSSEEEEEEETTTTS-EEEEEEEEE-E-SSTTEEEEEEEEEEEES--EEEEEEEEESSSS
T ss_pred EEEeeCCCceEEEEEEEECCCCCcEEEEEECCCCC-cEEEEEEEcCC-CCccccEEEEEEEeeCC--CeeEEEEEEECCC
Confidence 3588889999999988877554 577877766555 88888888653 23345666666665554 4557777777654
Q ss_pred --EEEEeEEee
Q 026000 225 --VIWFDQVSA 233 (245)
Q Consensus 225 --~v~lD~VSL 233 (245)
.++||-+.+
T Consensus 113 ~~~~niD~~~f 123 (125)
T PF03422_consen 113 GWAFNIDYFQF 123 (125)
T ss_dssp SB-EEEEEEEE
T ss_pred CceEEeEEEEE
Confidence 699998875
No 6
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=95.53 E-value=0.19 Score=39.62 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=51.1
Q ss_pred ccceecccCCEEEEEEEEEeCC-CeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeCCC
Q 026000 145 YWGMGIKQGKTYKVVFYIRSLG-SVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRK 223 (245)
Q Consensus 145 y~Gi~v~~G~tY~~Sf~ar~~~-~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~~ 223 (245)
|.++.+.+...|.+++.+.+.. .+.|+|.+-+.+| +.+++..++.. .....|+..+..+... .....|.|.+.+.
T Consensus 44 y~~vd~~~~g~~~i~~~~as~~~~~~i~v~~d~~~G-~~~~~~~~p~t-g~~~~~~~~~~~v~~~--~G~~~l~~~~~~~ 119 (129)
T smart00606 44 YKDVDFGSSGAYTFTARVASGNAGGSIELRLDSPTG-TLVGTVDVPST-GGWQTYQTVSATVTLP--AGVHDVYLVFKGG 119 (129)
T ss_pred EEeEecCCCCceEEEEEEeCCCCCceEEEEECCCCC-cEEEEEEeCCC-CCCccCEEEEEEEccC--CceEEEEEEEECC
Confidence 4567776668899999887653 3568888766566 88888888753 1123344444444322 2234555555544
Q ss_pred eEEEEeEEe
Q 026000 224 GVIWFDQVS 232 (245)
Q Consensus 224 G~v~lD~VS 232 (245)
..+.||-+.
T Consensus 120 ~~~~ld~~~ 128 (129)
T smart00606 120 NYFNIDWFR 128 (129)
T ss_pred CcEEEEEEE
Confidence 338888764
No 7
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=93.96 E-value=0.63 Score=40.23 Aligned_cols=149 Identities=16% Similarity=0.300 Sum_probs=61.1
Q ss_pred hhhh-hhhcCCCcccCCCC---CC--CCCCCceEecCC----eeEE-EecCCCCcccCCcceEEEEEecCCCCccccCCC
Q 026000 68 GLWA-ELVSNRGFEAGGQN---IP--SNIDPWAIIGND----SSLI-VSTDRSSCFERNKVALRMEVLCDSQGTNICPVG 136 (245)
Q Consensus 68 GLYA-ELi~NRsFE~~~~~---~~--~~~~~W~~~g~~----~~~~-~~~~~~~~~~~n~~sl~v~v~~~~~~~~~~~~~ 136 (245)
||.| |||+|..|..+..+ ++ ..+.-|-.+.+. +.+. ..+++ +.-+++++|++.. +++ ..
T Consensus 2 g~~AQnLIkN~~F~t~Lt~e~~~as~~T~~~Wfavnde~~G~Tt~a~~~tnD----~k~~na~~is~~~---~~t---sW 71 (212)
T PF15425_consen 2 GISAQNLIKNGDFDTPLTNENTTASNTTFGKWFAVNDEWDGATTIAWINTND----QKTGNAWGISSWD---KQT---SW 71 (212)
T ss_dssp --------SSTT--S----B-SSGGGS-TTSEEEEE-S-TTS-EEEEEE-S-----TTS-EEEEETT-S---S------T
T ss_pred ccchhhhhhcCccCcchhccccCcCcccccceEEEecccCCceEeeeeccCc----ccccceEEEeecc---cCc---HH
Confidence 4555 89999999854211 11 146779887443 2222 22222 3346788774321 111 11
Q ss_pred c-eEEEccCc-cceecccCCEEEEEEEEEeCCCe-eEE--EEEEeCCCCeeEEE-------------------EEEEeee
Q 026000 137 G-VGVYNPGY-WGMGIKQGKTYKVVFYIRSLGSV-NIL--VSLTSSNGLQTLAT-------------------SNIIASA 192 (245)
Q Consensus 137 ~-~gi~N~Gy-~Gi~v~~G~tY~~Sf~ar~~~~~-~vt--V~L~~~~g~~~lAs-------------------~~i~v~~ 192 (245)
. .-+.++ + .| ++ -.-|.+|||||++..+ +|+ |.|.+.+| +..-. -...+.
T Consensus 72 ykafLaQr-~~~g--ae-~~mYtLsF~AkA~t~g~qv~V~Irl~~~ng-K~~~~Ffmr~~~d~~sqpn~s~a~y~~~ik- 145 (212)
T PF15425_consen 72 YKAFLAQR-YTNG--AE-KGMYTLSFDAKADTNGTQVHVFIRLHNDNG-KDNQRFFMRRDYDAQSQPNQSDAQYNFKIK- 145 (212)
T ss_dssp TTEEEEEE-E-S------SSEEEEEEEEEESSTT-EEEEEEE-B-TTS--B---EEEETT--TTT-TTSBSS-EEEE---
T ss_pred HHHHHHHH-Hhcc--cc-cceEEEEEEeecccCCCcEEEEEEEecCCC-ccceeEEEEeccccccCccchhhhhhhccc-
Confidence 1 112221 0 12 12 2459999999997544 544 44555554 32211 122332
Q ss_pred cCCCCcEEEEEEEEec------------------CC-CC-----cceEEEEeC-CCeEEEEeEEee
Q 026000 193 SDVSNWTRVETLLEAK------------------ET-NP-----NARLQLTTS-RKGVIWFDQVSA 233 (245)
Q Consensus 193 ~~~~~W~ky~~~Lta~------------------~t-~~-----~a~L~I~~~-~~G~v~lD~VSL 233 (245)
..+.|+||.+.+.=. .+ ++ +-.++|... .+|.+.||-|||
T Consensus 146 -kAgkWtkv~~~fdfgkvvNai~s~k~n~~~~vt~td~~~a~Lkdf~i~iq~q~k~s~vlId~VsL 210 (212)
T PF15425_consen 146 -KAGKWTKVSVYFDFGKVVNAISSFKMNPAEEVTDTDDDAAILKDFYICIQSQNKPSSVLIDDVSL 210 (212)
T ss_dssp -STT--EEEEEEEEEEEEES-SSBTTT-TT--EEE--TT-HHHHSEEEEEE--STT-EEEEEEEEE
T ss_pred -cCCceEEEEEEeehhHHhHHHhhhccCCCCccccCccchhhhcceEEEEEEcCCCceEEecccEe
Confidence 358999999887621 11 11 223444433 468999999998
No 8
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=93.71 E-value=0.75 Score=37.21 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=48.5
Q ss_pred EEEEEEEEEe--CCCeeEEEEEEeCCCC--eeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeC--CCeEEEE
Q 026000 155 TYKVVFYIRS--LGSVNILVSLTSSNGL--QTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTS--RKGVIWF 228 (245)
Q Consensus 155 tY~~Sf~ar~--~~~~~vtV~L~~~~g~--~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~--~~G~v~l 228 (245)
..-++||..- ...+.|+|.+....++ ..+-+. .+..+..|++-++.|.+....-.-.|+-... ..|.|.|
T Consensus 72 ~~Cl~F~y~~~g~~~g~L~V~v~~~~~~~~~~lw~~----~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~~~~~g~IAI 147 (157)
T cd06263 72 SHCLSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSA----SGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIAL 147 (157)
T ss_pred CeEEEEEEEecCCCCCeEEEEEEeCCCCcceEEEEE----ECCCCCeeEEEEEEECCCCCceEEEEEEEECCCccccEEE
Confidence 3447777764 4467899988876652 223222 2223589999999999874222222222222 2589999
Q ss_pred eEEeecCC
Q 026000 229 DQVSAMPL 236 (245)
Q Consensus 229 D~VSLfP~ 236 (245)
|-|+|.|.
T Consensus 148 DdI~l~~g 155 (157)
T cd06263 148 DDISLSPG 155 (157)
T ss_pred eEEEEecc
Confidence 99999884
No 9
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=93.60 E-value=1.7 Score=36.71 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=43.1
Q ss_pred CEEEEEEEEEeCCC-eeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEec---------CCCC------c--ce
Q 026000 154 KTYKVVFYIRSLGS-VNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAK---------ETNP------N--AR 215 (245)
Q Consensus 154 ~tY~~Sf~ar~~~~-~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~---------~t~~------~--a~ 215 (245)
...-++||+|++.. .+|+|++.+... ..+-...+.++ .+||+++.-|..= .... + -.
T Consensus 72 ~~~gl~Fw~k~dgs~~~l~vqi~d~~~-~e~~~~~~~~~----~~W~~V~IPF~~f~~~~~~~p~g~~~~~~ldl~~v~~ 146 (178)
T PF03425_consen 72 GYGGLSFWIKGDGSGNKLRVQIKDGGD-YEYWEASFTDS----STWKTVEIPFSDFTQRPDYQPGGWGADGTLDLTNVWE 146 (178)
T ss_dssp T--EEEEEEEE------EEEEEEEE-E-EEEEEEEE-------SS-EEEEEEGGG-EE--S---TT----SS--TTSEEE
T ss_pred cCCcEEEEEEcCCCCcEEEEEEecCCc-ceeeEeecCCC----CcCEEEEEEHHHcccccccCCCCCCcccccChHHcEE
Confidence 34578999998753 458888887541 23334556653 4599999875531 1011 1 14
Q ss_pred EEEEeCCC---eEEEEeEEeecCCC
Q 026000 216 LQLTTSRK---GVIWFDQVSAMPLD 237 (245)
Q Consensus 216 L~I~~~~~---G~v~lD~VSLfP~d 237 (245)
|+|.+.+. |+|+||-|.|.|..
T Consensus 147 ~~~~~~~~~~~~~~~iDdI~l~~~~ 171 (178)
T PF03425_consen 147 FAFYVNGGGGAGTFYIDDIRLYGAA 171 (178)
T ss_dssp EEEEESSS---EEEEEEEEEEE-B-
T ss_pred EEEEEcCCCceeEEEEEeEEEEeCc
Confidence 67777664 79999999999864
No 10
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=93.25 E-value=1.2 Score=35.25 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=42.3
Q ss_pred cCCEEEEEEEEEe--CCCeeEEEEEEeCCC--CeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEE--eC--CC
Q 026000 152 QGKTYKVVFYIRS--LGSVNILVSLTSSNG--LQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLT--TS--RK 223 (245)
Q Consensus 152 ~G~tY~~Sf~ar~--~~~~~vtV~L~~~~g--~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~--~~--~~ 223 (245)
+...+-++||... ...+.++|.+..... ...+.+..- .....|++.++.|.+. ...-++.|. .. ..
T Consensus 70 ~~~~~cl~F~y~~~g~~~~~L~V~v~~~~~~~~~~l~~~~~----~~~~~W~~~~v~l~~~--~~~~~i~f~~~~~~~~~ 143 (160)
T PF00629_consen 70 ASGNSCLSFWYYMYGSSVGTLRVYVREESTGNSTPLWSITG----SQGNSWQRAQVNLPPI--SSPFQIIFEAIRGSSYR 143 (160)
T ss_dssp -SS--EEEEEEEEE-SSSEEEEEEEEETT----S-SEEE---------SSEEEEEEEE-----TS-EEEEEEEEE--SS-
T ss_pred ccccceeEEEEeeccccceeeEEEEEecCCccceeeeeecC----CCcCCccceEEEcccc--cccceEEEEEEEcCCCc
Confidence 3345568887764 444679999888722 123333222 2368999999999996 233344443 22 24
Q ss_pred eEEEEeEEeecCC
Q 026000 224 GVIWFDQVSAMPL 236 (245)
Q Consensus 224 G~v~lD~VSLfP~ 236 (245)
|.|.||-|+|-|.
T Consensus 144 ~~iaiDdi~~~~~ 156 (160)
T PF00629_consen 144 GDIAIDDISLSPG 156 (160)
T ss_dssp -EEEEEEEEEESS
T ss_pred eEEEEEEEEEeCC
Confidence 9999999999864
No 11
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=93.20 E-value=0.97 Score=37.24 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=60.6
Q ss_pred cceEEEEEecCCCCccccCCCceEEEccCccceecccCCEEEEEEEEEe--CCCeeEEEEEEeCCCCe--eEEEEEEEee
Q 026000 116 KVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRS--LGSVNILVSLTSSNGLQ--TLATSNIIAS 191 (245)
Q Consensus 116 ~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi~v~~G~tY~~Sf~ar~--~~~~~vtV~L~~~~g~~--~lAs~~i~v~ 191 (245)
.+||.++..... +...+-|.=+=+ ... ...+-++||..- ...+.|+|.+.+.++.. .+- ...
T Consensus 47 G~y~~v~~~~~~------~g~~A~L~SP~~---~~~-~~~~cl~F~Y~m~G~~~g~L~V~~~~~~~~~~~~lw----~~~ 112 (161)
T smart00137 47 GHFMFFETSSGA------PGQTARLLSPPL---YEN-RSTHCLTFWYYMYGSGSGTLNVYVRENNGSQDTLLW----SRS 112 (161)
T ss_pred eeEEEEECCCCC------CCCEEEEECCcc---cCC-CCCeEEEEEEEecCCCCCEEEEEEEeCCCCCceEeE----EEc
Confidence 588888765321 122344443222 212 135668888764 34567888887544422 222 222
Q ss_pred ecCCCCcEEEEEEEEecCCCCcceEEEEeC--CCeEEEEeEEeecCC
Q 026000 192 ASDVSNWTRVETLLEAKETNPNARLQLTTS--RKGVIWFDQVSAMPL 236 (245)
Q Consensus 192 ~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~--~~G~v~lD~VSLfP~ 236 (245)
+..+..|++-++.|.+....-+-+|+-... ..|.|.||-|+|.|.
T Consensus 113 g~~~~~W~~~~v~l~~~~~~fqi~fe~~~g~~~~g~IAiDDI~i~~g 159 (161)
T smart00137 113 GTQGGQWLQAEVALSKWQQPFQVVFEGTRGKGHSGYIALDDILLSNG 159 (161)
T ss_pred CCCCCceEEEEEEecCCCCcEEEEEEEEEcCCccceEEEeEEEeecc
Confidence 234688999999999732222222222222 248999999999874
No 12
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=88.07 E-value=7.8 Score=29.32 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=45.6
Q ss_pred EEEEEEEEEeCCCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCC-CCcceEEEEe
Q 026000 155 TYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKET-NPNARLQLTT 220 (245)
Q Consensus 155 tY~~Sf~ar~~~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t-~~~a~L~I~~ 220 (245)
+++++=.+|. .++.|.++|.|.+| +++++..+... .....|..|+.++.-+.. ...++|++..
T Consensus 17 p~~V~G~A~~-FEgtv~~rv~D~~g-~vl~e~~~~a~-~g~~~~g~F~~tv~~~~~~~~~g~l~v~~ 80 (88)
T PF10648_consen 17 PVKVSGKARV-FEGTVNIRVRDGHG-EVLAEGFVTAT-GGAPSWGPFEGTVSFPPPPPGKGTLEVFE 80 (88)
T ss_pred CEEEEEEEEE-eeeEEEEEEEcCCC-cEEEEeeEEec-cCCCcccceEEEEEeCCCCCCceEEEEEE
Confidence 3444545553 46889999999888 88888887763 357899999988876533 6677777663
No 13
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=86.90 E-value=0.11 Score=50.49 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=32.8
Q ss_pred eeEEEEecCC-CCCCCCceeeeEEeeccccccchhhh
Q 026000 36 TARLLVDASQ-GRPMPETLFGIFFEEINHAGAGGLWA 71 (245)
Q Consensus 36 ~~~ltVd~~~-~~~Isp~LyGiFfEdIN~a~DGGLYA 71 (245)
+++++|+++. ..+|+..+||.|.|++..+.++|||-
T Consensus 3 ~a~~~v~~d~~ig~I~k~iYG~F~EHlGr~vY~Giye 39 (501)
T COG3534 3 KARAVVDTDYTIGKIDKRIYGHFIEHLGRAVYEGIYE 39 (501)
T ss_pred ccceeechhhccCcchhhhhhHHHHhhccceeeeeec
Confidence 3568899999 89999999999999999999999994
No 14
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=79.50 E-value=44 Score=29.58 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=40.9
Q ss_pred ceecccCCEEEEEEEEEeCC-CeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEec
Q 026000 147 GMGIKQGKTYKVVFYIRSLG-SVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAK 208 (245)
Q Consensus 147 Gi~v~~G~tY~~Sf~ar~~~-~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~ 208 (245)
-|++. |....+++|+-+.+ ...+++.|+|.+| ++..-.-=.+ .-.+||+.++.+-+.
T Consensus 100 ~Ipi~-g~~k~I~vWV~G~n~~h~L~v~lrD~~G-~~~~l~~G~L---~f~GWK~L~~~iP~~ 157 (217)
T PF04620_consen 100 PIPIP-GVIKSISVWVYGDNYPHWLEVLLRDAKG-EVHQLPLGSL---NFDGWKNLTVNIPPY 157 (217)
T ss_pred ceecc-ceeEEEEEEEECCCCCceEEEEEEcCCC-CEEEEEeeee---cCCceeEEEEECCCC
Confidence 46654 78899999999965 5679999999998 4432111122 257999999986554
No 15
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=78.16 E-value=25 Score=26.07 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=42.3
Q ss_pred ccCCEEEEEEEEEeCC-------CeeEEEEEEeCCCCeeEEEEEE-EeeecCCCCcEEEEEEEEecCCCCcceEEEEeCC
Q 026000 151 KQGKTYKVVFYIRSLG-------SVNILVSLTSSNGLQTLATSNI-IASASDVSNWTRVETLLEAKETNPNARLQLTTSR 222 (245)
Q Consensus 151 ~~G~tY~~Sf~ar~~~-------~~~vtV~L~~~~g~~~lAs~~i-~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~ 222 (245)
++|++=.++.++|... ..+++|.|.+.+| ..+.+... .. .+.-.++..|+-.....-|...|++..
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g-~~v~~~~~~~~-----~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSG-NEVFRWSVNTT-----NENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTS-EEEEEEEEEET-----TCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEECCCC-CEEEEEEeeee-----CCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 6899999999998643 2579999999988 77777766 32 355556666665555666666555443
No 16
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=76.62 E-value=20 Score=30.06 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=52.1
Q ss_pred EEEEEEeCCCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEE----EEecCC------CC---------------
Q 026000 158 VVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETL----LEAKET------NP--------------- 212 (245)
Q Consensus 158 ~Sf~ar~~~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~----Lta~~t------~~--------------- 212 (245)
+.||-.....+.-+++|.+.+| +.||+.++.-. ..+.||+.++. |++..+ .+
T Consensus 36 vrfYk~~~ntgthtgsLWsa~G-~lLAt~tft~e--tasGWQt~~f~~PV~v~AgttYVvSY~a~~G~Ys~~~~~F~~~~ 112 (149)
T PF13313_consen 36 VRFYKGAGNTGTHTGSLWSADG-TLLATATFTNE--TASGWQTVTFSTPVAVTAGTTYVVSYHAPSGHYSATSGYFASSV 112 (149)
T ss_pred EEEEeCCCCCCceEEEEECCCC-CEEEEEEEcCC--CCCceEEEeccCCeEEcCCCeEEEEEECCCCcEeEcCCcccccc
Confidence 4455333456677899999998 89999999754 36789998754 443211 11
Q ss_pred -cceEEEEeCC--CeEEEEeEEeecCCCCCCC
Q 026000 213 -NARLQLTTSR--KGVIWFDQVSAMPLDTYKD 241 (245)
Q Consensus 213 -~a~L~I~~~~--~G~v~lD~VSLfP~dT~kg 241 (245)
.+-|.....+ .|.+.-.--+.||..+|++
T Consensus 113 ~~gpL~a~~~~~~NGvy~yg~~~~FP~~s~~~ 144 (149)
T PF13313_consen 113 TNGPLTAPAGGGGNGVYRYGAGGTFPTSSYNA 144 (149)
T ss_pred ccccceeccCCcCCeEEeCCCCCCCCCCCcCc
Confidence 2223333322 4777777778899888865
No 17
>PF14299 PP2: Phloem protein 2
Probab=73.36 E-value=51 Score=27.21 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=51.0
Q ss_pred ecccCCEEEEEEEEEeCC------CeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEE-EEEecCCCCcceEEEEeC
Q 026000 149 GIKQGKTYKVVFYIRSLG------SVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVET-LLEAKETNPNARLQLTTS 221 (245)
Q Consensus 149 ~v~~G~tY~~Sf~ar~~~------~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~-~Lta~~t~~~a~L~I~~~ 221 (245)
.+-++.+|.++|.+|-.. ..+|++++.-.++++.-....+.......++|-.+++ +|.... ..++.+.+.+-
T Consensus 55 ~Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~-~~~~ev~f~~~ 133 (154)
T PF14299_consen 55 MLSPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEG-GDDGEVEFSMY 133 (154)
T ss_pred EcCCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecC-CCCcEEEEEEE
Confidence 367899999999999531 1266666666665332223444443335789999996 777663 34555554432
Q ss_pred C------CeEEEEeEEeecC
Q 026000 222 R------KGVIWFDQVSAMP 235 (245)
Q Consensus 222 ~------~G~v~lD~VSLfP 235 (245)
. ++-+-|+-|-+=|
T Consensus 134 E~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 134 EVDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred EecCCcccCeEEEEEEEEec
Confidence 2 3455555555444
No 18
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=72.47 E-value=51 Score=26.81 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=46.9
Q ss_pred cccCCEEEEEEEEEeCCC--eeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeCCCeEEE
Q 026000 150 IKQGKTYKVVFYIRSLGS--VNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIW 227 (245)
Q Consensus 150 v~~G~tY~~Sf~ar~~~~--~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~~G~v~ 227 (245)
+++|++|.+.+-+..... .-++|.+-|+.+ +.+....+.- .+.+|+-......=++++.-.|-.++.
T Consensus 50 Lk~G~~Y~l~~~~~~~P~~svylki~F~dr~~-e~i~~~i~k~----------~~~~F~yP~~aysY~I~LinaG~~~l~ 118 (128)
T PF15432_consen 50 LKRGHTYQLKFNIDVVPENSVYLKIIFFDRQG-EEIEEQIIKN----------DSFEFTYPEEAYSYTISLINAGCQSLT 118 (128)
T ss_pred ecCCCEEEEEEEEEEccCCeEEEEEEEEccCC-CEeeEEEEec----------CceEEeCCCCceEEEEEEeeCCCCeeE
Confidence 477999999999987543 457888889888 6776665542 124555443333334454444455666
Q ss_pred EeEEeecC
Q 026000 228 FDQVSAMP 235 (245)
Q Consensus 228 lD~VSLfP 235 (245)
+.-+++-+
T Consensus 119 F~~i~I~e 126 (128)
T PF15432_consen 119 FHSIEISE 126 (128)
T ss_pred EeEEEEEE
Confidence 66655543
No 19
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=72.26 E-value=17 Score=25.92 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=29.9
Q ss_pred eecccCCEEEEEEEEEeC--CCeeEEEEEEeCCCCeeEEEEEEEe
Q 026000 148 MGIKQGKTYKVVFYIRSL--GSVNILVSLTSSNGLQTLATSNIIA 190 (245)
Q Consensus 148 i~v~~G~tY~~Sf~ar~~--~~~~vtV~L~~~~g~~~lAs~~i~v 190 (245)
+.|. |.+|...=+-+-. ..++.+|.+++++| ++|++..+.+
T Consensus 23 l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G-~~l~~~~F~V 65 (66)
T PF11141_consen 23 LPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDG-QVLGSLRFSV 65 (66)
T ss_pred Eecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCC-CEEEEEEEEE
Confidence 3344 5556655554433 57899999999998 8999998876
No 20
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=71.11 E-value=51 Score=26.26 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=26.4
Q ss_pred cCccceecccCCEEEEEEEEEeCCC--eeEEEEEEe
Q 026000 143 PGYWGMGIKQGKTYKVVFYIRSLGS--VNILVSLTS 176 (245)
Q Consensus 143 ~Gy~Gi~v~~G~tY~~Sf~ar~~~~--~~vtV~L~~ 176 (245)
.||+-+.+.+|++.++.+-++.... ..+.|.+.+
T Consensus 16 ~~YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~ 51 (121)
T PF06030_consen 16 VSYFDLKVKPGQKQTLEVRITNNSDKEITVKVSANT 51 (121)
T ss_pred CCeEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEee
Confidence 6899999999999999999987543 445555444
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.90 E-value=2.6 Score=32.59 Aligned_cols=25 Identities=32% Similarity=0.139 Sum_probs=11.9
Q ss_pred CCCCCCCcchhhHHHHH--HHHhhhhhcccce
Q 026000 1 MASCKVPSCGVLLLLFF--IGTCFLFQCFAAE 30 (245)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 30 (245)
|+|+. +++|..| +++.|++|.-|.+
T Consensus 1 MaSK~-----~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKA-----FLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhH-----HHHHHHHHHHHHHHHhhhhhHH
Confidence 78555 3333322 2335555555544
No 22
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=67.05 E-value=82 Score=27.07 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCCceEecCCeeEEEecCCCCcccCCcceEEEEEecCCCCccccCCCceEEEccCccce--ecccCCEE---EEEEEEEe
Q 026000 90 IDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGM--GIKQGKTY---KVVFYIRS 164 (245)
Q Consensus 90 ~~~W~~~g~~~~~~~~~~~~~~~~~n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi--~v~~G~tY---~~Sf~ar~ 164 (245)
...|....+ +.+.++... +....+||+-+-.. .+...|.++. ++ .-..++.+ .+.||+=.
T Consensus 17 p~~~~~~~~-s~LslS~~h---yK~G~~SL~W~w~~---------gs~l~i~~~~--~~~~~~~~~k~~g~~~~~~WIYN 81 (178)
T PF09092_consen 17 PDAFTTSQG-STLSLSDEH---YKDGKQSLKWNWQP---------GSTLTISKPL--GFEPDAPTSKDGGRSAFIFWIYN 81 (178)
T ss_dssp TTCTEEECC-EEEEEESSS----SSTT-EEEEEEEC---------CEEEEEES-B------HHCCCCHHTCCEEEEEEEE
T ss_pred CcceEecCC-ceEEeCHhH---hhCCccccEEEcCC---------CCEEEEeccc--ccccccccccccCcceEEEEEEC
Confidence 356665433 246676543 56778999988763 2334555542 22 01112222 39999977
Q ss_pred CC--CeeEEEEEEeCC---CCeeEEEEEEEeeecCCCCcEEEEEEEEe------cCC-CCcceEEEEeC---CCeEEEEe
Q 026000 165 LG--SVNILVSLTSSN---GLQTLATSNIIASASDVSNWTRVETLLEA------KET-NPNARLQLTTS---RKGVIWFD 229 (245)
Q Consensus 165 ~~--~~~vtV~L~~~~---g~~~lAs~~i~v~~~~~~~W~ky~~~Lta------~~t-~~~a~L~I~~~---~~G~v~lD 229 (245)
+. .+.|++++.+.. | ++-+.-.+.+. -.+|+-.=+.+.- ... ..=.+|+|+.+ ..|+|+||
T Consensus 82 e~p~~~~l~f~F~~~~~~t~-~~~~~F~~~LN---FtGWR~~WV~y~~Dm~g~~~~g~~~md~l~i~AP~~~~~G~lf~D 157 (178)
T PF09092_consen 82 EKPQDDKLRFEFGKGLINTG-KPCYWFPFNLN---FTGWRAAWVSYERDMQGRPEEGSKDMDSLRITAPANDPSGTLFFD 157 (178)
T ss_dssp SS--SSEEEEEEECT--TTT-EECEEEEEE------SEEEEEEEETTTTSEE---TT-----EEEEE--TTSSEEEEEEE
T ss_pred CCCcCCeEEEEecCCcccCC-ccceEEEEEee---cccceeeeeeehhhccCCcccCcceeeEEEEEccccCCCccEEEE
Confidence 64 467999988763 4 66666677764 5678766555443 211 23457888886 46999999
Q ss_pred EEeecC
Q 026000 230 QVSAMP 235 (245)
Q Consensus 230 ~VSLfP 235 (245)
.+-+=.
T Consensus 158 ~l~~~~ 163 (178)
T PF09092_consen 158 RLIFSV 163 (178)
T ss_dssp EEEEEE
T ss_pred EEeecc
Confidence 987654
No 23
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=65.65 E-value=32 Score=28.85 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=42.1
Q ss_pred eEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeCCCeEEEEeEEeecC
Q 026000 169 NILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMP 235 (245)
Q Consensus 169 ~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~~G~v~lD~VSLfP 235 (245)
++++++. -+| ++++.+.|.+.. .+.|.+....-....|+.+|++.|++..+|...|-.+-.-|
T Consensus 152 ~~~~~vl-~~G-kPl~~a~V~~~~--~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~~p 214 (215)
T PF10670_consen 152 PLPFQVL-FDG-KPLAGAEVEAFS--PGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASHKDP 214 (215)
T ss_pred EEEEEEE-ECC-eEcccEEEEEEE--CCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEEecC
Confidence 4666655 366 899888888752 45675432111222367899999999999988887665544
No 24
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=55.12 E-value=21 Score=28.49 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred ceecccCCE--EEEEEEEEeCCC---eeEEEEEEeCCC
Q 026000 147 GMGIKQGKT--YKVVFYIRSLGS---VNILVSLTSSNG 179 (245)
Q Consensus 147 Gi~v~~G~t--Y~~Sf~ar~~~~---~~vtV~L~~~~g 179 (245)
.=||++|++ |+.++.+....+ ..|+++|.+++|
T Consensus 72 ~CPl~~G~~~~y~~~~~V~~~~P~v~~~V~~~L~d~~g 109 (120)
T cd00918 72 KCPIKKGQHYDIKYTWNVPAILPKIKAVVKAVLIGDHG 109 (120)
T ss_pred eCCCcCCcEEEEEEeeeccccCCCeEEEEEEEEEcCCC
Confidence 678999999 566677766443 568888888766
No 25
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=54.44 E-value=98 Score=23.84 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=33.2
Q ss_pred CcceEEEEEecCCCCccccCCCceEEEccCccceecccCCEEEEEEEEEeCC------CeeEEEEEEeCCC
Q 026000 115 NKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLG------SVNILVSLTSSNG 179 (245)
Q Consensus 115 n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi~v~~G~tY~~Sf~ar~~~------~~~vtV~L~~~~g 179 (245)
.++.++|.+.+. .++.+.. +...+.|.+|++.++.++++.+. ..++++.+.+.++
T Consensus 45 ~~~~~~i~~~g~---------~~~~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~ 105 (118)
T PF11614_consen 45 QPRTYTISVEGL---------PGAELQG-PENTITVPPGETREVPVFVTAPPDALKSGSTPITFTVTDDDG 105 (118)
T ss_dssp S-EEEEEEEES----------SS-EE-E-S--EEEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGG
T ss_pred CCEEEEEEEecC---------CCeEEEC-CCcceEECCCCEEEEEEEEEECHHHccCCCeeEEEEEEECCC
Confidence 356677777642 2455633 67899999999999999999642 2467888775454
No 26
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=52.35 E-value=61 Score=25.02 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=22.8
Q ss_pred cceecccCCEEEEEEEEEeCCCeeEEEEEEeCCCC
Q 026000 146 WGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGL 180 (245)
Q Consensus 146 ~Gi~v~~G~tY~~Sf~ar~~~~~~vtV~L~~~~g~ 180 (245)
||++|-++= .++|.+++...+.|+|...|++|.
T Consensus 60 ~~~siS~NP--~l~F~~~~~~~g~l~v~~~Dn~G~ 92 (100)
T PF08770_consen 60 WGPSISENP--YLRFSFKGKKSGTLTVTWTDNKGN 92 (100)
T ss_dssp E-TTB-SS---EEEEEEEESSSEEEEEEEEETTS-
T ss_pred eCCcccCCC--cEEEEEecCCCcEEEEEEEECCCC
Confidence 677775544 456667887778999999999983
No 27
>PF09212 CBM27: Carbohydrate binding module 27; InterPro: IPR015295 This domain is found in carbohydrate binding proteins that bind to beta-1, 4-mannooligosaccharides, carob galactomannan, and konjac glucomannan, but not to cellulose (insoluble and soluble) or soluble birchwood xylan. The region adopts a beta sandwich structure comprising 13 beta strands with a single, small alpha-helix and a single metal atom []. ; PDB: 1OF3_A 1OF4_A 1OH4_A 1PMJ_X 1PMH_X.
Probab=47.05 E-value=47 Score=28.33 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=58.1
Q ss_pred CcceEEEEEecCCCCccccCCCceEEEccCccceecccCCEEEEEEEEEe-C-CCeeEEEEEEeCCCCeeEE--------
Q 026000 115 NKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRS-L-GSVNILVSLTSSNGLQTLA-------- 184 (245)
Q Consensus 115 n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi~v~~G~tY~~Sf~ar~-~-~~~~vtV~L~~~~g~~~lA-------- 184 (245)
+..+||+++.-... + . =...-| ...+. .+-...+-++-+|+=. + ..+.++....-.+|-.-+.
T Consensus 42 g~gaLklnv~~~~~--~-~-W~E~ki-~~~~~--dls~~~~l~fDv~iP~~~~~~G~l~~~a~l~~gW~k~g~~~~~~~v 114 (170)
T PF09212_consen 42 GSGALKLNVDFDGN--N-D-WDELKI-FKNFE--DLSEYNRLEFDVYIPKNEKYSGSLKPYAALNPGWTKIGMDTTEINV 114 (170)
T ss_dssp GGSEEEEEEEE-TT--S-T-TEEEEE-CCEEC--CGCC--EEEEEEEEEHHCCSSSEE-EEEEECTTTEEECCCSCEEEC
T ss_pred CCccEEEEeecCCC--C-C-cchhhh-hhhhh--hcCCccEEEEEEEeCCCCCCCccEEEEEEcCCChHHhccccccccc
Confidence 45688888864210 0 0 012333 22233 3455666677777743 2 3454443322233311111
Q ss_pred --EEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeCC-----CeEEEEeEEeec
Q 026000 185 --TSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSR-----KGVIWFDQVSAM 234 (245)
Q Consensus 185 --s~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~-----~G~v~lD~VSLf 234 (245)
...+.+ .+.+++|+++++.-..+..-..|.|.+.+ .|.|+||-|.|.
T Consensus 115 ~dle~v~i---~Gk~Y~k~~v~i~~~~~~~~~~lvl~ivG~~~~Y~GpIYIDNV~L~ 168 (170)
T PF09212_consen 115 KDLETVTI---DGKGYKKIHVSIEFDSSKKATQLVLQIVGSNLDYNGPIYIDNVKLI 168 (170)
T ss_dssp CCSEEEEE---TTEEEEEEEEEEE--SSCCE-EEEEEEEEES--EEEEEEEEEEEEE
T ss_pred cccceEEE---CCeEEEEEEEEEEccccCCCCcEEEEEccccccccCCEEEEeEEEe
Confidence 122344 26789999998877655556678887766 599999999986
No 28
>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.
Probab=43.99 E-value=1.4e+02 Score=25.64 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=40.3
Q ss_pred ceEEEccCccceecccC-CEEEEEEEEEe--CC--CeeEEEEEEeCCCCeeEEEEEEE---eeecCCCCcEEEEEEEEe
Q 026000 137 GVGVYNPGYWGMGIKQG-KTYKVVFYIRS--LG--SVNILVSLTSSNGLQTLATSNII---ASASDVSNWTRVETLLEA 207 (245)
Q Consensus 137 ~~gi~N~Gy~Gi~v~~G-~tY~~Sf~ar~--~~--~~~vtV~L~~~~g~~~lAs~~i~---v~~~~~~~W~ky~~~Lta 207 (245)
.+.|..+|||-=-+... -.=.+|-|.-+ +- ...+.|+|.+++. +++++-... +..-....|++.+.+|+.
T Consensus 70 ~IDL~~eG~~~~lLD~~qP~I~isdWy~~r~dc~~~Y~l~V~Lld~~~-~vi~~f~~~~~~~~~~~~~~W~qvsh~F~~ 147 (184)
T PF04300_consen 70 VIDLQAEGYWPELLDSFQPEITISDWYAGRFDCGCVYELHVQLLDANK-NVIAEFKPGPVPIPQWTDNPWKQVSHTFSN 147 (184)
T ss_dssp EEETTTTT--HHHHHHT--EEEEEEEEE--SSS-EEEEEEEEEEETTT-EEEEEEEEESEEE-T--T--EEEEEEEE-S
T ss_pred EEehhhccCCHHHhcCCCCCEEEEEEEeccCCcCcEEEEEEEECcCCC-cEEEEEecccccccccCCCCcEEEEEEEeC
Confidence 35778889876444432 23445556533 22 3579999999985 888776543 211236789999999985
No 29
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=43.34 E-value=52 Score=26.97 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=26.2
Q ss_pred eEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEE
Q 026000 169 NILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQL 218 (245)
Q Consensus 169 ~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I 218 (245)
.|+.-+.|...|++.+...|.+....+++|+... ...|+.|||+..
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~----~~~Td~dGR~~~ 73 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLN----TAKTDKDGRIKA 73 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEE----EEEECCCCCCcc
Confidence 4666666665556666666666433345676643 234566666654
No 30
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=43.12 E-value=1.5e+02 Score=22.56 Aligned_cols=80 Identities=8% Similarity=0.029 Sum_probs=42.1
Q ss_pred eecccCCEEEEEEEEEeCCCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeCCCeEEE
Q 026000 148 MGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIW 227 (245)
Q Consensus 148 i~v~~G~tY~~Sf~ar~~~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~~G~v~ 227 (245)
-....+++|.++|-+++=.+-.|+|.+.+..= .+-+...-.-. ..+--+++|.-.+.-.....-..+.=.+..+|.|.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L-~V~Gkh~~~~~-e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~ 86 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKDGFV-EVSGKHEEQQK-EGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLI 86 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEECCEE-EEEEEECcccC-CCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEE
Confidence 34455789999999988656678888765311 12222221111 01122455555555444444444444455566665
Q ss_pred Ee
Q 026000 228 FD 229 (245)
Q Consensus 228 lD 229 (245)
|.
T Consensus 87 Ie 88 (91)
T cd06480 87 IE 88 (91)
T ss_pred EE
Confidence 54
No 31
>PF14785 MalF_P2: Maltose transport system permease protein MalF P2 domain; PDB: 3RLF_F 3PUX_F 3PV0_F 3PUY_F 3PUV_F 2R6G_F 3PUZ_F 3PUW_F.
Probab=42.00 E-value=42 Score=28.48 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=26.6
Q ss_pred cCCEEEEEEEEEeCCCeeEEEEEEeCCCCeeEEEEEEEee
Q 026000 152 QGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIAS 191 (245)
Q Consensus 152 ~G~tY~~Sf~ar~~~~~~vtV~L~~~~g~~~lAs~~i~v~ 191 (245)
+|++|+|++|--++ + ..+.|.+.++++.|.|..+.+.
T Consensus 17 ~g~~y~F~Ly~~~d--~-~~L~l~~~~~~~~~~S~p~~l~ 53 (164)
T PF14785_consen 17 SGESYPFTLYPTGD--G-YRLALTDGESGQLYVSEPFSLD 53 (164)
T ss_dssp EEEEEEEEEEEETT--E-EEEEEEETTTTEEEEE--B---
T ss_pred CCCceeeEEEecCC--e-EEEEEeCCCcCceEEeCCcccc
Confidence 48999999994333 3 8999999887799999999884
No 32
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=40.85 E-value=61 Score=25.66 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=23.8
Q ss_pred ceecccCCEEEEEE--EEEeCC---CeeEEEEEEeCCCCeeE
Q 026000 147 GMGIKQGKTYKVVF--YIRSLG---SVNILVSLTSSNGLQTL 183 (245)
Q Consensus 147 Gi~v~~G~tY~~Sf--~ar~~~---~~~vtV~L~~~~g~~~l 183 (245)
.=+|++|++|+... .+.... +..|+++|.+.++ +.+
T Consensus 76 ~CPl~~G~~~~y~~~~~v~~~~P~i~~~v~~~L~d~~~-~~~ 116 (123)
T cd00916 76 SCPLSAGEDVTYTLSLPVLAPYPGISVTVEWELTDDDG-QVL 116 (123)
T ss_pred CCCCcCCcEEEEEEeeeccccCCCeEEEEEEEEEcCCC-CEE
Confidence 46889998866554 554433 3568888988766 444
No 33
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=40.20 E-value=94 Score=26.13 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=36.7
Q ss_pred CEEEEEEEEEeC-CCeeEEEEEEeCCCCeeEE----E-EEEEeeecCCCCcEEEEEEEEecCC-CCcceEEEEeCCCeE-
Q 026000 154 KTYKVVFYIRSL-GSVNILVSLTSSNGLQTLA----T-SNIIASASDVSNWTRVETLLEAKET-NPNARLQLTTSRKGV- 225 (245)
Q Consensus 154 ~tY~~Sf~ar~~-~~~~vtV~L~~~~g~~~lA----s-~~i~v~~~~~~~W~ky~~~Lta~~t-~~~a~L~I~~~~~G~- 225 (245)
..|++.+.+=+. ....++|.+.+..+ ..-. . ..+.-.+.-.+.|+.|++.+.+..= ...+.+.|+.. .|+
T Consensus 78 ~~~tL~i~la~a~~~~~~~V~vNg~~~-~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~-~gs~ 155 (167)
T PF14683_consen 78 GTYTLRIALAGASAGGRLQVSVNGWSG-PFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTVP-SGSG 155 (167)
T ss_dssp --EEEEEEEEEEETT-EEEEEETTEE------------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEEE--S-G
T ss_pred CcEEEEEEeccccCCCCEEEEEcCccC-CccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEEc-cCCC
Confidence 578888777554 45667777765332 2111 0 1111111123789999999988642 22455666553 466
Q ss_pred ----EEEeEEee
Q 026000 226 ----IWFDQVSA 233 (245)
Q Consensus 226 ----v~lD~VSL 233 (245)
|-.|.|.|
T Consensus 156 ~~~gvmyD~I~L 167 (167)
T PF14683_consen 156 LSPGVMYDYIRL 167 (167)
T ss_dssp GSSEEEEEEEEE
T ss_pred ccCeEEEEEEEC
Confidence 88999887
No 34
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=38.43 E-value=2.3e+02 Score=23.37 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=28.1
Q ss_pred cccCCEEEEEEEEEeCCC--eeEEEEEEeCCCCeeEEEEEE
Q 026000 150 IKQGKTYKVVFYIRSLGS--VNILVSLTSSNGLQTLATSNI 188 (245)
Q Consensus 150 v~~G~tY~~Sf~ar~~~~--~~vtV~L~~~~g~~~lAs~~i 188 (245)
+++|++|.+.+-+.+... .-++|.+-|+.+ +.+....+
T Consensus 61 Lk~g~~Y~i~~n~~~~P~~s~~~ki~F~dr~~-~ei~~~i~ 100 (135)
T TIGR03711 61 LKRGQTYKLSLNADASPEGSVYLKITFFDRQG-EEIGTEIE 100 (135)
T ss_pred EcCCCEEEEEEeeeeCCCceEEEEEEEeccCC-ceeceEEE
Confidence 477999999999987544 457777888887 66655444
No 35
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=37.87 E-value=1.1e+02 Score=21.27 Aligned_cols=19 Identities=11% Similarity=0.343 Sum_probs=14.1
Q ss_pred CCcceEEEEeCCCeEEEEe
Q 026000 211 NPNARLQLTTSRKGVIWFD 229 (245)
Q Consensus 211 ~~~a~L~I~~~~~G~v~lD 229 (245)
..+..+.++...+|+..|-
T Consensus 49 ~~~~~i~~~~~~~GtYyi~ 67 (70)
T PF04151_consen 49 GNDESITFTAPAAGTYYIR 67 (70)
T ss_dssp TSEEEEEEEESSSEEEEEE
T ss_pred CCccEEEEEcCCCEEEEEE
Confidence 4556777888888988774
No 36
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=37.32 E-value=26 Score=22.68 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=6.0
Q ss_pred HHHHhhhhhc
Q 026000 17 FIGTCFLFQC 26 (245)
Q Consensus 17 ~~~~~~~~~~ 26 (245)
+++|||++|.
T Consensus 25 liif~f~le~ 34 (43)
T PF11395_consen 25 LIIFWFSLEI 34 (43)
T ss_pred HHHHHHHHhh
Confidence 4556776654
No 37
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=36.13 E-value=1.6e+02 Score=20.92 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=30.3
Q ss_pred cccCCEEEEEEEEEeCCC---eeEEEEEEeCCCCee--EEEEEE-EeeecCCCCcEEEEEEEEecCCCCcceEEEEe
Q 026000 150 IKQGKTYKVVFYIRSLGS---VNILVSLTSSNGLQT--LATSNI-IASASDVSNWTRVETLLEAKETNPNARLQLTT 220 (245)
Q Consensus 150 v~~G~tY~~Sf~ar~~~~---~~vtV~L~~~~g~~~--lAs~~i-~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~ 220 (245)
+.+|++..+++-++.... ..++++|.--+| .. .....+ .+ ..++=...++++++.+....+...|++
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~G-W~~~~~~~~~~~l---~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSLPEG-WTVSASPASVPSL---PPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE--TT-SE---EEEEE--B----TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeCCCC-ccccCCccccccC---CCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 356778888888776432 235555555555 33 122222 22 245556666667666655555554443
No 38
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=35.99 E-value=65 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=23.2
Q ss_pred ceecccCCEE--EEEEEEEeCC---CeeEEEEEEeCCCCeeE
Q 026000 147 GMGIKQGKTY--KVVFYIRSLG---SVNILVSLTSSNGLQTL 183 (245)
Q Consensus 147 Gi~v~~G~tY--~~Sf~ar~~~---~~~vtV~L~~~~g~~~l 183 (245)
.=|+++|++| +.++.+.... ...++++|.++++ +.+
T Consensus 71 ~CPl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~-~~i 111 (118)
T smart00737 71 KCPIEKGETVNYTNSLTVPGIFPPGKYTVKWELTDEDG-EEL 111 (118)
T ss_pred CCCCCCCeeEEEEEeeEccccCCCeEEEEEEEEEcCCC-CEE
Confidence 4689999985 4555554432 3457778888776 444
No 39
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=33.62 E-value=2.6e+02 Score=22.66 Aligned_cols=68 Identities=15% Similarity=0.274 Sum_probs=38.2
Q ss_pred CccceecccCCEEEEEEEEEeCCCeeEEEEEEe-------CCCCeeEEE---EEEEeeecCCCCcEEEEEEEEecCCCCc
Q 026000 144 GYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTS-------SNGLQTLAT---SNIIASASDVSNWTRVETLLEAKETNPN 213 (245)
Q Consensus 144 Gy~Gi~v~~G~tY~~Sf~ar~~~~~~vtV~L~~-------~~g~~~lAs---~~i~v~~~~~~~W~ky~~~Lta~~t~~~ 213 (245)
...-+.+++|++|.+.|. =+.....+.+++.+ .|| ..+-- ..+.+ .-=+||++.+++.. +.
T Consensus 58 ~~~~~~v~~g~~~rlRli-Na~~~~~~~~~i~gh~~~Via~DG-~~v~p~~~~~l~l-----~~G~R~dvlv~~~~--~~ 128 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLI-NAGASTSFNFSIDGHPMTVIAADG-VPVEPYKVDTLVL-----APGQRYDVLVTADQ--PP 128 (159)
T ss_dssp TSGEEEEETTTEEEEEEE-EESSS-BEEEEETTBCEEEEEETT-EEEEEEEESBEEE------TTEEEEEEEEECS--CS
T ss_pred ccceEEEcCCcEEEEEEE-eccCCeeEEEEeeccceeEeeecc-ccccccccceEEe-----eCCeEEEEEEEeCC--CC
Confidence 357899999999999987 33333344444432 244 22211 11222 23378888888865 25
Q ss_pred ceEEEEe
Q 026000 214 ARLQLTT 220 (245)
Q Consensus 214 a~L~I~~ 220 (245)
+.+.|..
T Consensus 129 g~y~i~~ 135 (159)
T PF00394_consen 129 GNYWIRA 135 (159)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 5555554
No 40
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=32.67 E-value=1.9e+02 Score=20.70 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=41.9
Q ss_pred cccCCEEEEEEEEEeCC---CeeEEEEEEeCCCCeeEEEEEE-EeeecCCCCcEEEEEEEEecCCCCcceEEEEeCCC
Q 026000 150 IKQGKTYKVVFYIRSLG---SVNILVSLTSSNGLQTLATSNI-IASASDVSNWTRVETLLEAKETNPNARLQLTTSRK 223 (245)
Q Consensus 150 v~~G~tY~~Sf~ar~~~---~~~vtV~L~~~~g~~~lAs~~i-~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~~~ 223 (245)
+..|+.+.+.+-++..+ ...++|.|... + ...++..| .+. .++.+.+.+++++. ....-.+.+.++.+
T Consensus 15 ~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~-~~~~~~~i~~L~---~g~~~~v~~~~~~~-~~G~~~i~~~iD~~ 86 (101)
T PF07705_consen 15 VVPGEPVTITVTVKNNGTADAENVTVRLYLD-G-NSVSTVTIPSLA---PGESETVTFTWTPP-SPGSYTIRVVIDPD 86 (101)
T ss_dssp EETTSEEEEEEEEEE-SSS-BEEEEEEEEET-T-EEEEEEEESEB----TTEEEEEEEEEE-S-S-CEEEEEEEESTT
T ss_pred ccCCCEEEEEEEEEECCCCCCCCEEEEEEEC-C-ceeccEEECCcC---CCcEEEEEEEEEeC-CCCeEEEEEEEeeC
Confidence 35688888888888643 34578887764 3 44467777 443 57788888888887 23333455555543
No 41
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=30.90 E-value=2e+02 Score=20.48 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=10.9
Q ss_pred EEEeCCCCeeEEEEEEEee
Q 026000 173 SLTSSNGLQTLATSNIIAS 191 (245)
Q Consensus 173 ~L~~~~g~~~lAs~~i~v~ 191 (245)
.+.|.+.++++..+.|.+.
T Consensus 5 ~V~d~~t~~pl~~a~V~~~ 23 (88)
T PF13715_consen 5 KVVDSDTGEPLPGATVYLK 23 (88)
T ss_pred EEEECCCCCCccCeEEEEe
Confidence 3455553366666666664
No 42
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=30.69 E-value=2.4e+02 Score=21.34 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=35.7
Q ss_pred EEEEEEeCCCeeEEEEEEeCCC--CeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEe
Q 026000 158 VVFYIRSLGSVNILVSLTSSNG--LQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTT 220 (245)
Q Consensus 158 ~Sf~ar~~~~~~vtV~L~~~~g--~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~ 220 (245)
|.|-++......+.|.+.+.+. ...+++..+.+..-..+......+.|.++ ..++|.|++
T Consensus 54 f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~---~~g~l~~~~ 115 (119)
T cd04036 54 FEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ---GKEELEVEF 115 (119)
T ss_pred EEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCC---CCceEEEEE
Confidence 3444443333458888888753 35788998887532344556666666554 356666654
No 43
>PLN03207 stomagen; Provisional
Probab=30.67 E-value=34 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.509 Sum_probs=10.4
Q ss_pred CCCcchhhHHHHHHH
Q 026000 5 KVPSCGVLLLLFFIG 19 (245)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (245)
+..||-+|+|+|+||
T Consensus 9 tt~~~~lffLl~~ll 23 (113)
T PLN03207 9 TTRCLTLFFLLFFLL 23 (113)
T ss_pred cchhHHHHHHHHHHH
Confidence 346787777777666
No 44
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=30.16 E-value=1.3e+02 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.7
Q ss_pred eeEEEEEEeCCCCeeEEEEEEEee
Q 026000 168 VNILVSLTSSNGLQTLATSNIIAS 191 (245)
Q Consensus 168 ~~vtV~L~~~~g~~~lAs~~i~v~ 191 (245)
..+...|++.+++++||++.|.|.
T Consensus 63 ~~~~f~L~~~~~~~~la~~~v~V~ 86 (102)
T PF11456_consen 63 KDTQFSLRDSDTGQPLAQVKVKVT 86 (102)
T ss_pred CCeEEEEEeCCCCcEEEEEEEEEE
Confidence 557889999998889999999984
No 45
>COG3906 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.87 E-value=1.8e+02 Score=22.88 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=42.1
Q ss_pred EEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCC--CCcceEEEE---eCCCeEEEEeEEeecCCCCC
Q 026000 171 LVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKET--NPNARLQLT---TSRKGVIWFDQVSAMPLDTY 239 (245)
Q Consensus 171 tV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t--~~~a~L~I~---~~~~G~v~lD~VSLfP~dT~ 239 (245)
.+.|.+.+|..++...-+.+. +..|.|=-+.|.|... ..++...|. +..++.-.=.-..|+|.+|.
T Consensus 15 ~itL~DE~GnE~lf~~L~~~d---~~ef~KeYVll~p~~~e~~e~~eiei~a~~~~~d~dG~eg~~~l~p~etd 85 (105)
T COG3906 15 VITLIDEDGNEVLFEILFTFD---GEEFGKEYVLLVPAGSEEDEDGEIEIFAYSFTPDEDGTEGDLQLVPIETD 85 (105)
T ss_pred EEEEECCCCceehhheeeeee---chhcceeEEEEecccccccCCCcEEEEEeecCcccccccCceeeecccch
Confidence 578999999889988888875 4699887788888655 455544433 33222111222346776664
No 46
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=27.87 E-value=2e+02 Score=27.71 Aligned_cols=58 Identities=7% Similarity=0.115 Sum_probs=31.9
Q ss_pred cceecccCCEEEEEEEEEeCCCe--eEEEEEEeCCCCeeEEE-EEEEeeecCCCCcEEEEEEEEe
Q 026000 146 WGMGIKQGKTYKVVFYIRSLGSV--NILVSLTSSNGLQTLAT-SNIIASASDVSNWTRVETLLEA 207 (245)
Q Consensus 146 ~Gi~v~~G~tY~~Sf~ar~~~~~--~vtV~L~~~~g~~~lAs-~~i~v~~~~~~~W~ky~~~Lta 207 (245)
.-+.++.|.+|.+++-+|+..++ .|-.+|.=+++|..+.- +.+.+. ++|..++-..|.
T Consensus 79 ~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~----g~~~dFtnpVtt 139 (381)
T PF04744_consen 79 RSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIE----GSMGDFTNPVTT 139 (381)
T ss_dssp S-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEE----S-GGG---EEEB
T ss_pred ceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEe----ccccccCcceEe
Confidence 57889999999999999997665 46666766666555544 445553 567666554443
No 47
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=27.79 E-value=1.1e+02 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.3
Q ss_pred CCCceEEEccC------ccceecccCCEEEEEEEEEeC
Q 026000 134 PVGGVGVYNPG------YWGMGIKQGKTYKVVFYIRSL 165 (245)
Q Consensus 134 ~~~~~gi~N~G------y~Gi~v~~G~tY~~Sf~ar~~ 165 (245)
|.+..-|+-.| ++-..+++|++|+|.+..-+.
T Consensus 118 ~~~kiwIaGd~g~~~tr~dDy~fEAGKtY~ftm~~~g~ 155 (161)
T PF10365_consen 118 PGGKIWIAGDGGDGPTRGDDYVFEAGKTYRFTMKRVGS 155 (161)
T ss_pred CCCeEEEecCCCCCCccccceEEecCCEEEEEEEeccC
Confidence 34555565555 356778999999999876554
No 48
>PF10836 DUF2574: Protein of unknown function (DUF2574) ; InterPro: IPR020386 This entry contains proteins with no known function.
Probab=26.99 E-value=50 Score=25.29 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=21.4
Q ss_pred HHHhhhhhcccceeeecceeEEEEecCCCCCCCCc
Q 026000 18 IGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPET 52 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ltVd~~~~~~Isp~ 52 (245)
+.+.++-+-+|.-.+++.+++|||. |+-.+|+
T Consensus 7 ~Gii~laYGls~P~faSdTATLtIs---Grv~~PT 38 (93)
T PF10836_consen 7 MGIIVLAYGLSSPAFASDTATLTIS---GRVSPPT 38 (93)
T ss_pred hhhhHhhhhcccccccccceEEEEc---ceEcCCc
Confidence 3344445555655566889999998 6666665
No 49
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=26.89 E-value=1.1e+02 Score=21.46 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=4.3
Q ss_pred CCCcceEEEE
Q 026000 210 TNPNARLQLT 219 (245)
Q Consensus 210 t~~~a~L~I~ 219 (245)
++.+|+|.|.
T Consensus 34 Td~~G~f~~~ 43 (82)
T PF13620_consen 34 TDSDGRFSFE 43 (82)
T ss_dssp --TTSEEEEE
T ss_pred ECCCceEEEE
Confidence 4455555555
No 50
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=24.16 E-value=3.3e+02 Score=20.84 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=24.6
Q ss_pred ceecccCCEEEEEEEEEe--CC---CeeEEEEEEeCCCCeeEEEEEE
Q 026000 147 GMGIKQGKTYKVVFYIRS--LG---SVNILVSLTSSNGLQTLATSNI 188 (245)
Q Consensus 147 Gi~v~~G~tY~~Sf~ar~--~~---~~~vtV~L~~~~g~~~lAs~~i 188 (245)
.=|+++|+.|.+.+=+.- .. ...+++.|.+.++ +.++=..+
T Consensus 85 ~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~-~~i~C~~~ 130 (134)
T PF02221_consen 85 SCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDG-EEIACFEF 130 (134)
T ss_dssp TSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTT-EEEEEEEE
T ss_pred cCccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCC-CEEEEEEE
Confidence 347999986555444432 22 3457778888886 55543333
No 51
>PF15541 Toxin_63: Putative toxin 63
Probab=24.00 E-value=24 Score=27.26 Aligned_cols=11 Identities=55% Similarity=0.685 Sum_probs=9.7
Q ss_pred hhhcCCCcccC
Q 026000 72 ELVSNRGFEAG 82 (245)
Q Consensus 72 ELi~NRsFE~~ 82 (245)
++||||+||.-
T Consensus 31 QevQNrGfEk~ 41 (104)
T PF15541_consen 31 QEVQNRGFEKF 41 (104)
T ss_pred HHHHhccHHHH
Confidence 78999999974
No 52
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=23.93 E-value=3.9e+02 Score=21.60 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=27.2
Q ss_pred EEEEEEEeCCCeeEEEEEEeCCC-CeeEEEEEEEeeecCCCCcEEEEEEEEe
Q 026000 157 KVVFYIRSLGSVNILVSLTSSNG-LQTLATSNIIASASDVSNWTRVETLLEA 207 (245)
Q Consensus 157 ~~Sf~ar~~~~~~vtV~L~~~~g-~~~lAs~~i~v~~~~~~~W~ky~~~Lta 207 (245)
-+++-+|++++ .-++.|..++. ....-++.+.+. .++|+.+.+-|..
T Consensus 70 ~l~l~vrgdGr-~Y~~~l~~~~~~~~~~y~~~f~t~---~~~w~~v~iPFs~ 117 (157)
T PF08547_consen 70 GLELRVRGDGR-TYKVNLRTDNDEPSDSYQARFQTP---PGEWQTVRIPFSD 117 (157)
T ss_pred EEEEEEEcCCc-eEEEEEEeCCCCCCceEEEEEecc---CCccEEEEEEHHH
Confidence 45666776643 34555554422 234446667663 4679998877553
No 53
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=22.85 E-value=4.2e+02 Score=22.74 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=36.1
Q ss_pred EccCccceecccCCEEEEEEEEEeCCCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEE
Q 026000 141 YNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLT 219 (245)
Q Consensus 141 ~N~Gy~Gi~v~~G~tY~~Sf~ar~~~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~ 219 (245)
.+.+|.=-++.+|++|.+++-+.... ....|..+..+ +..|++++-.=.. -+...+...||
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtkgt--------------stESS~~i~ms---T~n~~~~esI~~g-marTGgMvViT 160 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTKGT--------------STESSNEIPMS---TLNRKNMESIDLG-MARTGGMVVIT 160 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEecCc--------------cceecceeccc---ccccccccccccc-ccccCCeEEEe
Confidence 34577778999999999999875431 12223345554 4677777733222 23444455554
No 54
>PLN02991 oxidoreductase
Probab=22.79 E-value=5.6e+02 Score=25.75 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=42.6
Q ss_pred ceEEEccC--ccceecccCCEEEEEEEEEeCCCeeEEEE-------EEeCCCC--eeEEEEEEEeeecCCCCcEEEEEEE
Q 026000 137 GVGVYNPG--YWGMGIKQGKTYKVVFYIRSLGSVNILVS-------LTSSNGL--QTLATSNIIASASDVSNWTRVETLL 205 (245)
Q Consensus 137 ~~gi~N~G--y~Gi~v~~G~tY~~Sf~ar~~~~~~vtV~-------L~~~~g~--~~lAs~~i~v~~~~~~~W~ky~~~L 205 (245)
...+.|-- +.-+.|++|++|.+++.==+. ...+.++ ++..||. +.+.-..|.+. -=+||++.+
T Consensus 191 d~~liNG~~~~~~~~v~~G~~yRlRiINa~~-~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~-----~GQRydvlv 264 (543)
T PLN02991 191 DGILINGRGSGATLNIEPGKTYRLRISNVGL-QNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVH-----VGQSYSVLI 264 (543)
T ss_pred CEEEEccCCCCceEEECCCCEEEEEEEeccC-CeeEEEEECCCEEEEEEeCCccccceeeeEEEEc-----CCcEEEEEE
Confidence 35666621 234889999999999864332 2223333 3333442 22222334442 347899999
Q ss_pred EecCCCCcceEEEE
Q 026000 206 EAKETNPNARLQLT 219 (245)
Q Consensus 206 ta~~t~~~a~L~I~ 219 (245)
++.++..+--+++.
T Consensus 265 ~a~~~~~~y~i~~~ 278 (543)
T PLN02991 265 TADQPAKDYYIVVS 278 (543)
T ss_pred ECCCCCCcEEEEEe
Confidence 88776554444443
No 55
>PF04393 DUF535: Protein of unknown function (DUF535); InterPro: IPR007488 Family member Shigella flexneri VirK (Q99QA5 from SWISSPROT) is a virulence protein required for the expression, or correct membrane localisation of IcsA (VirG) on the bacterial cell surface [, ]. This family also includes Pasteurella haemolytica lapB (P32181 from SWISSPROT), which is thought to be membrane-associated.
Probab=22.56 E-value=1.7e+02 Score=26.83 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=39.7
Q ss_pred ceecccCCEEEEEEEEE--eCCCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEE
Q 026000 147 GMGIKQGKTYKVVFYIR--SLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLE 206 (245)
Q Consensus 147 Gi~v~~G~tY~~Sf~ar--~~~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lt 206 (245)
-+. +.|+.|.+++-.- -..+|.+++.|.+.+| +.+++.++.+. ...++++=+=.-|.
T Consensus 103 ~~~-~~~~~~~l~L~~~~~~~kEGel~L~L~~~~~-~~ly~~tF~~~-~~~~~~~l~IG~lQ 161 (288)
T PF04393_consen 103 SFE-KNGEEYSLYLSYNHGFRKEGELSLSLRDEEG-QRLYSLTFSFV-PQNGENTLFIGGLQ 161 (288)
T ss_pred EEe-cCCceEEEEEecCCCCCCceeeEEEEEcCCC-ceEEEEEEEEE-ccCCCceEEEEeee
Confidence 455 6788999888543 3457999999999886 89999998874 12345554444444
No 56
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=22.44 E-value=7.7e+02 Score=24.47 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=29.9
Q ss_pred EEEEEEEeCCCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEE
Q 026000 157 KVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLL 205 (245)
Q Consensus 157 ~~Sf~ar~~~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~L 205 (245)
++.|=+.+.....|++.|.+.+| +.+++....+. .+. +.+++.|
T Consensus 330 ~i~ftv~a~g~~~vta~V~d~~g-~~~~~~~~~v~---d~s-~~vtL~L 373 (478)
T PRK13211 330 TLDFTVTATGDMNVEATVYNHDG-EALGSKSQTVN---DGS-QSVSLDL 373 (478)
T ss_pred EEEEEEEeccceEEEEEEEcCCC-CeeeeeeEEec---CCc-eeEEEec
Confidence 34555555666789999999888 78888888774 334 4444444
No 57
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=22.02 E-value=3.7e+02 Score=20.61 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=38.3
Q ss_pred cccCCEEEEEEEEEeCCC-eeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEE
Q 026000 150 IKQGKTYKVVFYIRSLGS-VNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQ 217 (245)
Q Consensus 150 v~~G~tY~~Sf~ar~~~~-~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~ 217 (245)
+..|+.|++.-.+.+..+ ..|+|.+.. |++.+-++.+... .....=+..++++++...+..+.|+
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~r--G~~~l~~~~~~~~-~~~~~~~~stlt~~~~r~D~g~~~s 78 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLR--GNETLSRQPFGDN-TKSPVNAPATITITVDREDHGANFS 78 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEee--CCEEcccceeccc-cCCCceeEEEEEEecchhhCCcEEE
Confidence 467999999999988654 447777764 3356655544321 0112334556667776555544444
No 58
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.88 E-value=1.9e+02 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.6
Q ss_pred EEEEEEEecCCCCcceEEEEeCCCeEEEEeE
Q 026000 200 RVETLLEAKETNPNARLQLTTSRKGVIWFDQ 230 (245)
Q Consensus 200 ky~~~Lta~~t~~~a~L~I~~~~~G~v~lD~ 230 (245)
=...+|.| ...+.+.+.+++.++|.|.||.
T Consensus 87 LLai~fe~-~e~p~G~v~L~fAGgg~IrL~V 116 (138)
T PF11164_consen 87 LLAITFEP-GEAPAGHVLLTFAGGGAIRLEV 116 (138)
T ss_pred EEEEEEEe-CCCCCcEEEEEECCCcEEEEEE
Confidence 34566777 4578999999999999888874
No 59
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=21.55 E-value=5.3e+02 Score=25.42 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=55.0
Q ss_pred CcceEEEEEecCCCCccccCCCceEEEccCccceecccCCEEEEEEEEEeCCCeeEEEEEEeCCCCeeEEEEEEEeeecC
Q 026000 115 NKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASD 194 (245)
Q Consensus 115 n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi~v~~G~tY~~Sf~ar~~~~~~vtV~L~~~~g~~~lAs~~i~v~~~~ 194 (245)
..+||++.-+-+.. .+..+.|.- .-+-|.++.+ +++-.|+....+|.+.+....+..+.+.. .+..
T Consensus 440 GGnSLKfsgdl~~~-----~~~nv~Ly~---t~L~i~~~tk--~~v~~k~~~glKV~~~f~~~pd~f~~~d~----~K~l 505 (553)
T COG4724 440 GGNSLKFSGDLAGK-----TDQNVRLYS---TKLEITEKTK--LRVAHKGGKGLKVYMAFSTTPDKFDDADA----WKEL 505 (553)
T ss_pred CCcceeeeeccccC-----CccceEEEe---eceeeecCce--EEEEeecCCceEEEEEEecCCccccchhh----hhhh
Confidence 45677765321110 022344443 3455555554 44445776666777777776552222222 1234
Q ss_pred CCCcEEEEEEEEecCCCCcceEEEEeCCCeE
Q 026000 195 VSNWTRVETLLEAKETNPNARLQLTTSRKGV 225 (245)
Q Consensus 195 ~~~W~ky~~~Lta~~t~~~a~L~I~~~~~G~ 225 (245)
+++|.+=++.|..-+...-..+.+.+..+|.
T Consensus 506 ~~nW~~e~~~l~~~~g~~i~av~l~~e~~~~ 536 (553)
T COG4724 506 SDNWTNEEFDLSSLAGKTIYAVKLFFEHEGA 536 (553)
T ss_pred cccchhhheehhhccCceEEEEEEEEeccCc
Confidence 6899999999988665555566666776663
No 60
>COG3126 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.26 E-value=2.9e+02 Score=23.37 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=39.9
Q ss_pred CCEEEEEEEEEeC----CCeeEEEEEEeCC----CCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEE--eCC
Q 026000 153 GKTYKVVFYIRSL----GSVNILVSLTSSN----GLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLT--TSR 222 (245)
Q Consensus 153 G~tY~~Sf~ar~~----~~~~vtV~L~~~~----g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~--~~~ 222 (245)
-.+-.+++|+|-. ....|+|+|.|-+ -.+++|+++|.-. +..=-.|...|.+..--++.|.++. +..
T Consensus 42 ~~sv~G~V~yReriALPp~AvltV~L~DvSlADaPsrvla~~tvr~~---Gq~P~~F~L~fdp~~i~p~~ryalsArI~~ 118 (158)
T COG3126 42 QKSVSGTVLYRERIALPPGAVLTVTLSDVSLADAPSRVLAEQTVRTE---GQVPFPFVLPFDPSDIQPNHRYALSARITV 118 (158)
T ss_pred ccccccceEEEEEecCCCCCEEEEEEEecccccChhHhhhhheeecc---CccceeEEeccChhhCCCCcEEEEEEEEEE
Confidence 3556677777742 2345777777652 1378999998753 2233334444455443444444433 333
Q ss_pred CeEEEE
Q 026000 223 KGVIWF 228 (245)
Q Consensus 223 ~G~v~l 228 (245)
+|+++|
T Consensus 119 ~gkL~F 124 (158)
T COG3126 119 NGKLLF 124 (158)
T ss_pred CCEEEE
Confidence 565554
No 61
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=21.13 E-value=1.3e+02 Score=28.98 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=26.9
Q ss_pred cceecccCCEEEEEEEEEeCCCe--eEEEEEEeCCCCee
Q 026000 146 WGMGIKQGKTYKVVFYIRSLGSV--NILVSLTSSNGLQT 182 (245)
Q Consensus 146 ~Gi~v~~G~tY~~Sf~ar~~~~~--~vtV~L~~~~g~~~ 182 (245)
.-++++.|.+|+|.+.+|+..++ .+-.++.=+++|-+
T Consensus 99 ~S~~LelG~dYefkv~lkaR~pG~~hvh~m~Nv~~~Gpi 137 (399)
T TIGR03079 99 ISGPLEIGRDYEFEVTLQARIPGRHHMHAMLNVKDAGPI 137 (399)
T ss_pred ceeEeecCCceeEEEEEeeccCCcccceeEEEeccCCCC
Confidence 57889999999999999986554 35555555555433
No 62
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=20.99 E-value=4.3e+02 Score=30.39 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=41.4
Q ss_pred ceecccCCEEEEEEEEEeC------CCeeEEEEEEeCCCCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcce
Q 026000 147 GMGIKQGKTYKVVFYIRSL------GSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNAR 215 (245)
Q Consensus 147 Gi~v~~G~tY~~Sf~ar~~------~~~~vtV~L~~~~g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~ 215 (245)
||. ++|++.++.+.+|.- ...++++.+.+.+| .++.+.++... ..+- +++.++...+...|.
T Consensus 403 glY-RpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG-~~~~~~~~~~~---~~G~--~~~~~~l~~na~tG~ 470 (1621)
T COG2373 403 GLY-RPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDG-SVLRTLTITLD---EEGL--YELSFPLPENALTGG 470 (1621)
T ss_pred ccC-CCCceeeeeeeehhhcccccccCCCeEEEEECCCC-cEEEEEEEecc---ccCc--eEEeeeCCCCCCcce
Confidence 455 789999999999852 23579999999998 78878777753 2333 344444444444443
No 63
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=72 Score=25.57 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=33.2
Q ss_pred HHHHhhhhhcccceeeecceeEEEEecCC-CCCCCCceeeeEEeeccccccch
Q 026000 17 FIGTCFLFQCFAAEVEVNQTARLLVDASQ-GRPMPETLFGIFFEEINHAGAGG 68 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~ltVd~~~-~~~Isp~LyGiFfEdIN~a~DGG 68 (245)
|||+.+.++-+---+.+..++++..++.. ...+=-..||.=.|+.|..+++|
T Consensus 39 ~LI~lv~Sy~lp~~lss~~~~~~v~np~ea~mk~v~k~~Gqele~~~~t~~ig 91 (121)
T COG4744 39 LLIALVMSYHLPELLSSNEDITIVKNPGEADMKIVIKDYGQELEVLNMTARIG 91 (121)
T ss_pred HHHHHHHhcCCccccCCCCCceEEecCcccceeeeehhcCcchhhhhcccccc
Confidence 45555655433322455666666666665 55565667999999988877654
No 64
>PLN02792 oxidoreductase
Probab=20.85 E-value=6.1e+02 Score=25.37 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=36.6
Q ss_pred ceecccCCEEEEEEEEEeCCCeeEEEE-------EEeCCCC--eeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEE
Q 026000 147 GMGIKQGKTYKVVFYIRSLGSVNILVS-------LTSSNGL--QTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQ 217 (245)
Q Consensus 147 Gi~v~~G~tY~~Sf~ar~~~~~~vtV~-------L~~~~g~--~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~ 217 (245)
-|.+++|++|.+.+.= +.....+.++ ++..||. +......|.+. -=+||++.+++.++..+-.++
T Consensus 194 ~~~v~~Gk~yRlRliN-a~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~-----~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 194 SITVDKGKTYRFRISN-VGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIH-----VGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred eEEECCCCEEEEEEEE-cCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEc-----cCceEEEEEEcCCCCceEEEE
Confidence 3889999999999863 2222223333 3333442 12222344442 337888888887654433343
Q ss_pred EE
Q 026000 218 LT 219 (245)
Q Consensus 218 I~ 219 (245)
++
T Consensus 268 a~ 269 (536)
T PLN02792 268 VS 269 (536)
T ss_pred EE
Confidence 33
No 65
>PF13201 Xylanase: Putative glycoside hydrolase xylanase; PDB: 3S30_B 3HBZ_A.
Probab=20.60 E-value=1.7e+02 Score=27.52 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=46.3
Q ss_pred cceecccCCEEEEEEEEEeC----------------CCeeEEEEEEeCCC-------------CeeEEEEEEEeeecCCC
Q 026000 146 WGMGIKQGKTYKVVFYIRSL----------------GSVNILVSLTSSNG-------------LQTLATSNIIASASDVS 196 (245)
Q Consensus 146 ~Gi~v~~G~tY~~Sf~ar~~----------------~~~~vtV~L~~~~g-------------~~~lAs~~i~v~~~~~~ 196 (245)
+|++..+ +.=.++.|.|-. ....|-+.|.+.+. ..++|-+.+.-. ...+
T Consensus 207 FG~pf~~-rP~~l~G~YKY~~G~~~~~~~~~~~~~~D~~~Iyavly~~~~~~~~l~g~~~~t~~~iia~a~~~~~-~~~~ 284 (342)
T PF13201_consen 207 FGRPFTK-RPTALKGYYKYTPGEVFYDNGKVVKGKKDECSIYAVLYEWSDDEEYLDGTNILTSPNIIAYAELTDG-TETD 284 (342)
T ss_dssp E-EE--S--EEEEEEEEEEE--SSEEETTEEESS-----EEEEEEEE-BTTBS-EECCTTTT-TTEEEEEE-SS----EE
T ss_pred cCCcccc-eecEEEEEEEEeEccEEecCCcccCCCCccEEEEEEEEeccCCcceecccccCCCcCEEEEEEecCC-CccC
Confidence 5666665 666677777621 01235555554421 245666766421 2467
Q ss_pred CcEEEEEEEEecCC---------CCcceEEEEeCC--Ce---------EEEEeEEee
Q 026000 197 NWTRVETLLEAKET---------NPNARLQLTTSR--KG---------VIWFDQVSA 233 (245)
Q Consensus 197 ~W~ky~~~Lta~~t---------~~~a~L~I~~~~--~G---------~v~lD~VSL 233 (245)
+|++++..|..... ..+-+|+|.+.. .| ++|||-|.|
T Consensus 285 ~~t~F~i~~~~~~~k~~d~~~l~~~~Y~laIV~SSSk~Gd~F~Ga~GStL~iDd~el 341 (342)
T PF13201_consen 285 EWTEFEIPFEYRYGKEYDYDKLENKKYKLAIVFSSSKYGDYFTGAVGSTLWIDDVEL 341 (342)
T ss_dssp EEEEEEEE-ECTTT----HHHHHCT-EEEEEEEESSTCGGGTEEETT-EEEEEEEEE
T ss_pred CCEEEEEEeEeecCcccChhhccCCCeEEEEEEecccCCCeeEcCCCCEEEEeeEEE
Confidence 99999999974321 234578888765 23 999999987
No 66
>PLN00115 pollen allergen group 3; Provisional
Probab=20.53 E-value=3.5e+02 Score=21.62 Aligned_cols=20 Identities=10% Similarity=0.017 Sum_probs=14.4
Q ss_pred CeeEEEEEEeCCCCeeEEEE
Q 026000 167 SVNILVSLTSSNGLQTLATS 186 (245)
Q Consensus 167 ~~~vtV~L~~~~g~~~lAs~ 186 (245)
+++++++++.++|+...+..
T Consensus 81 ~GPlS~R~t~~~G~~~va~n 100 (118)
T PLN00115 81 KGPFSVRFLVKGGGYRVVDD 100 (118)
T ss_pred CCceEEEEEEeCCCEEEECc
Confidence 56899999988775545533
No 67
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=20.24 E-value=5.3e+02 Score=21.73 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=36.7
Q ss_pred EEEEEEEeCC-CeeEEEEEEeC--CCCe-eEEEEEEEee---------ecCCCCcEEEEEEEEecCCC--CcceEEEEeC
Q 026000 157 KVVFYIRSLG-SVNILVSLTSS--NGLQ-TLATSNIIAS---------ASDVSNWTRVETLLEAKETN--PNARLQLTTS 221 (245)
Q Consensus 157 ~~Sf~ar~~~-~~~vtV~L~~~--~g~~-~lAs~~i~v~---------~~~~~~W~ky~~~Lta~~t~--~~a~L~I~~~ 221 (245)
.+.++++++. ...|.|.|.+- +|.. .+....+.++ .-..++|.++++.|.|.+.. .--||+|.+.
T Consensus 99 ~l~L~vs~~~~d~~l~v~L~dv~pdG~~~~it~G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p~~~~~~~GhrLrl~I~ 178 (218)
T PF08530_consen 99 SLRLWVSSDAPDADLFVRLSDVDPDGTSTLITRGWLRASHRESDEKPEPLEPGEPYDVTIELQPTAYVFPAGHRLRLSIS 178 (218)
T ss_dssp EEEEEEEESSSS-EEEEEEEEEETTSSEEEEEEEEEEGGGSSCSSST----TT-EEEEEEEEEEEEEEE-TT-EEEEEEE
T ss_pred EEEEEEEecCCCcEEEEEEEEeCCCCCEEEccceEEEcccccCccccccCCCCcEEEEEEEEchhccEECCCCEEEEEEE
Confidence 4566777654 35677777754 5633 4555445541 01358999999999996432 2235655554
Q ss_pred C
Q 026000 222 R 222 (245)
Q Consensus 222 ~ 222 (245)
+
T Consensus 179 ~ 179 (218)
T PF08530_consen 179 S 179 (218)
T ss_dssp S
T ss_pred e
Confidence 3
Done!