BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026001
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 142/221 (64%), Gaps = 5/221 (2%)
Query: 28 FTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGRTGCNFDAS 87
T N+C TVWPGTL G+ L GF L + AS P+ WSGR WGRT C+ DA+
Sbjct: 3 ITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAA 62
Query: 88 XXXXXXXXX-XXXVLKCTGGGA-PPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
+ C G GA PP +LVE TIA N +D+YDVSLVDG+N+ + V
Sbjct: 63 GKFTCETADCGSGQVACNGAGAVPPATLVEITIAAN-GGQDYYDVSLVDGFNLPMSVAPQ 121
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDS-GSVVACKSACAAFNTPEFCCTGDHATPDTCS 204
GG G+C+ + C A++N CPA LQV + GSV++CKSAC AF ++CCT + TP+TC
Sbjct: 122 GGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCP 181
Query: 205 PTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITFCP 244
PT+YS++F+ CP AYSYAYDD +ST TCS G DY+ITFCP
Sbjct: 182 PTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/222 (49%), Positives = 135/222 (60%), Gaps = 5/222 (2%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGRTGCNFDA 86
+ +N+C Y VWPGTL + L GF L + AS Q P W+GR W RTGC+ DA
Sbjct: 2 TISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDA 61
Query: 87 SXXXXXXXXX-XXXVLKCTGGGA-PPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKA 144
S + C G GA PP +L EF I +DFYDVSLVDG+N+ + V
Sbjct: 62 SGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAG-GGQDFYDVSLVDGFNLPMSVTP 120
Query: 145 VGGKGDCQYAGCVADLNGNCPAELQVTDS-GSVVACKSACAAFNTPEFCCTGDHATPDTC 203
GG GDC+ A C A++N CP+ELQ S GSVVAC SAC F TP++CCT TP+TC
Sbjct: 121 QGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETC 180
Query: 204 SPTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITFCP 244
PT YS++F +ACP AYSYAYDD T TC+ G +Y ITFCP
Sbjct: 181 PPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSG-RIWGRTGCNFD 85
VFT+ N C +TVW ++ +G GG L G S + PA + RIW RTGC FD
Sbjct: 2 VFTVVNQCPFTVWAASV------PVG-GGRQLNRGESWRITAPAGTTAARIWARTGCKFD 54
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
AS VL+CTG G P +L E+ + N DF+D+SL+DG+N+ +
Sbjct: 55 ASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQF-NNLDFFDISLIDGFNVPMSFLPD 113
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
GG G + C D+N CPAEL+ C +AC F E+CC G A + C P
Sbjct: 114 GGSGCSRGPRCAVDVNARCPAELRQDG-----VCNNACPVFKKDEYCCVGSAA--NDCHP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTC-SGSDYLITFCP 244
T YS+ FK CP AYSY DDA+ST TC +G++Y + FCP
Sbjct: 167 TNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 115/220 (52%), Gaps = 25/220 (11%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N C+YTVW A GG L +G S V P + RIWGRT C FD
Sbjct: 2 TFDILNKCTYTVW--------AAASPGGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFD 53
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
A+ +L+C G G+PP +L EF + N PN D+ D+SLVDG+NI +
Sbjct: 54 ANGRGKCETGDCNGLLECQGYGSPPNTLAEFAL-NQPNNLDYIDISLVDGFNIPMDFSG- 111
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C D+NG CP+EL+ C + C F T E+CCT P +C P
Sbjct: 112 -----CRGIQCSVDINGQCPSELKAPG-----GCNNPCTVFKTNEYCCTDG---PGSCGP 158
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTC-SGSDYLITFCP 244
T YS+ FK CP AYSY DD +S TC SG++Y +TFCP
Sbjct: 159 TTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 112/220 (50%), Gaps = 23/220 (10%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSG-RIWGRTGCNFD 85
F + N CSYTVW A + GG L G S V A +G RIWGRTGC+FD
Sbjct: 2 TFEIVNRCSYTVW--------AAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFD 53
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S VL CT G PP +L EF + N N DF+D+SLVDG+N+ +
Sbjct: 54 GSGRGRCQTGDCGGVLSCTAYGNPPNTLAEFAL-NQFNNLDFFDISLVDGFNVPMDFSPT 112
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
G C+ C AD+NG CP L+ C + C F T ++CC CSP
Sbjct: 113 --SGGCRGIRCAADINGQCPGALKAPG-----GCNNPCTVFKTDQYCCNSG-----ACSP 160
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTC-SGSDYLITFCP 244
T YSQ FK CP AYSY DD ++T TC G++Y + FCP
Sbjct: 161 TDYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 111/222 (50%), Gaps = 22/222 (9%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWS-GRIWGRTGCNFD 85
VF + N+C YTVW AT GG L G S F P RIWGRT CNFD
Sbjct: 3 VFEVHNNCPYTVW-------AAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFD 55
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
+ VL+C G G PP +L E+ + N + DF+D+S++DG+NI +
Sbjct: 56 GAGRGWCQTGDCGGVLECKGWGKPPNTLAEYAL-NQFSNLDFWDISVIDGFNIPMSFGPT 114
Query: 146 G-GKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCS 204
G G C C A++NG CP L+V C + C F ++CC T C
Sbjct: 115 KPGPGKCHGIQCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCC-----TQGPCG 164
Query: 205 PTQYSQLFKHACPTAYSYAYDDASSTCTCSG--SDYLITFCP 244
PT+ S+ FK CP AYSY DD +ST TC+ +DY + FCP
Sbjct: 165 PTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 113/222 (50%), Gaps = 26/222 (11%)
Query: 30 LENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWS-GRIWGRTGCNFDASX 88
+ N+C YTVW +T GG L G + P RIWGRTGCNF+A+
Sbjct: 5 VRNNCPYTVW-------AASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAG 57
Query: 89 XXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGL---GVKAV 145
VL+CTG G PP +L E+ + N DF+D+SLVDG+NI + K
Sbjct: 58 RGTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSN-LDFWDISLVDGFNIPMTFAPTKPS 116
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
GGK C C A++NG CP L+V C + C F ++CC T C P
Sbjct: 117 GGK--CHAIHCTANINGECPRALKVPG-----GCNNPCTTFGGQQYCC-----TQGPCGP 164
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG--SDYLITFCPS 245
T+ S+ FK CP AYSY DD +ST TC G ++Y + FCP+
Sbjct: 165 TELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCPN 206
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N CSYTVW G A L GG L +G S V P G+IW RT C FD
Sbjct: 2 TFEIVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFD 59
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S +L+C G PP +L EF++ N KD+ D+S + G+N+ +
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSL--NQYGKDYIDISNIKGFNVPMDFSPT 117
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C AD+ G CPA+L+ G C AC F T E+CCT C P
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTGK-----CGP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG-SDYLITFCPS 245
T+YS+ FK CP A+SY D +T TC G S+Y +TFCP+
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKP-TTVTCPGSSNYRVTFCPT 206
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N CSYTVW G A L GG L +G S V P G+IW RT C FD
Sbjct: 2 TFEIVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD 59
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S +L+C G PP +L EF++ N KD+ D+S + G+N+ +
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSL--NQYGKDYIDISNIKGFNVPMNFSPT 117
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C AD+ G CPA+L+ G C AC F T E+CCT C P
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTGK-----CGP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG-SDYLITFCPS 245
T+YS+ FK CP A+SY D +T TC G S+Y +TFCP+
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKP-TTVTCPGSSNYRVTFCPT 206
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N CSYTVW G A L GG L +G S V P G+IW RT C FD
Sbjct: 2 TFEIVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD 59
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S +L+C G PP +L EF++ N KD+ D+S + G+N+ +
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSL--NQYGKDYIDISNIKGFNVPMNFSPT 117
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C AD+ G CPA+L+ G C AC F T E+CCT C P
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTGK-----CGP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG-SDYLITFCPS 245
T+YS+ FK CP A+SY D +T TC G S+Y +TFCP+
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKP-TTVTCPGSSNYRVTFCPT 206
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N CSYTVW G A L GG L +G S V P G+IW RT C FD
Sbjct: 2 TFEIVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD 59
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S +L+C G PP +L EF++ N KD+ D+S + G+N+ +
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSL--NQYGKDYIDISNIKGFNVPMDFSPT 117
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C AD+ G CPA+L+ G C AC F T E+CCT C P
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTGK-----CGP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG-SDYLITFCPS 245
T+YS+ FK CP A+SY D +T TC G S+Y +TFCP+
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKP-TTVTCPGSSNYRVTFCPT 206
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N CSYTVW G A L GG L +G S V P G+IW RT C FD
Sbjct: 2 TFEIVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFD 59
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S +L+C G PP +L EF++ N KD+ D+S + G+N+ +
Sbjct: 60 DSGRGICRTGDCGGLLQCKRFGRPPTTLAEFSL--NQYGKDYIDISNIKGFNVPMDFSPT 117
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C AD+ G CPA+L+ G C AC F T E+CCT C P
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTGK-----CGP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG-SDYLITFCPS 245
T+YS+ FK CP A+SY D +T TC G S+Y +TFCP+
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKP-TTVTCPGSSNYRVTFCPT 206
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 30 LENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWS-GRIWGRTGCNFDASX 88
+ N+C YTVW +T GG L G + P R+WGRT CNF+A+
Sbjct: 5 VRNNCPYTVW-------AASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAG 57
Query: 89 XXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVG-G 147
VL+CTG G PP +L E+ + + + DF+D+SLVDG+NI +
Sbjct: 58 RGTCQTGDCGGVLQCTGWGKPPNTLAEYAL-DQFSGLDFWDISLVDGFNIPMTFAPTNPS 116
Query: 148 KGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSPTQ 207
G C C A++NG CP EL+V C + C F ++CCT C PT
Sbjct: 117 GGKCHAIHCTANINGECPRELRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTF 166
Query: 208 YSQLFKHACPTAYSYAYDDASSTCTCSG--SDYLITFCP 244
+S+ FK CP AYSY DD +ST TC G ++Y + FCP
Sbjct: 167 FSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 109/221 (49%), Gaps = 18/221 (8%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N CSYTVW G A L GG L +G S V P G+IW RT C FD
Sbjct: 2 TFEIVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFD 59
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S +L+C G PP +L EF++ N KD+ D+S + G+N+ +
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSL--NQXGKDYIDISNIKGFNVPMNFSPT 117
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C AD+ G CPA+L+ G C AC F T E+CCT C P
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTGK-----CGP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG-SDYLITFCPS 245
T+ S+ FK CP A+SY D +T TC G S+Y +TFCP+
Sbjct: 167 TEXSRFFKRLCPDAFSYVLDKP-TTVTCPGSSNYRVTFCPT 206
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 107/221 (48%), Gaps = 18/221 (8%)
Query: 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV-PAAWSGRIWGRTGCNFD 85
F + N CS TVW G A L GG L +G S V P G+IW RT C FD
Sbjct: 2 TFEIVNRCSXTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFD 59
Query: 86 ASXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAV 145
S +L+C G PP +L EF++ N KD D+S + G+N+ +
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSL--NQXGKDXIDISNIKGFNVPMNFSPT 117
Query: 146 GGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPEFCCTGDHATPDTCSP 205
C+ C AD+ G CPA+L+ G C AC F T E+CCT C P
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTGK-----CGP 166
Query: 206 TQYSQLFKHACPTAYSYAYDDASSTCTCSG-SDYLITFCPS 245
T+ S+ FK CP A+SY D +T TC G S+Y +TFCP+
Sbjct: 167 TEXSRFFKRLCPDAFSYVLDKP-TTVTCPGSSNYRVTFCPT 206
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 28 FTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGRTGCNFD-A 86
T+ N C +TVWP V G GG L GAS P S IWGRTGC+FD A
Sbjct: 3 LTITNRCHFTVWPAVAL---VLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRA 59
Query: 87 SXXXXXXXXXXXXVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVG 146
L C G A P ++ E ++ + S + G+N+ + +K
Sbjct: 60 GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQ--GNYTYGVTSTLKGFNVPMNLKCSS 117
Query: 147 GKG-DCQYAGC 156
G C+ AGC
Sbjct: 118 GDALPCRKAGC 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,624,179
Number of Sequences: 62578
Number of extensions: 315681
Number of successful extensions: 679
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 22
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)