Query 026001
Match_columns 245
No_of_seqs 141 out of 700
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 7E-86 1.5E-90 577.2 18.7 216 27-243 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 3.7E-83 8E-88 560.0 18.3 215 28-244 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 1.3E-82 2.7E-87 558.5 18.2 212 28-244 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 4.9E-80 1.1E-84 539.9 8.4 211 32-244 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 5.5E-60 1.2E-64 395.2 14.9 155 28-243 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 3E-52 6.6E-57 346.9 14.3 149 28-244 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 5.9E-51 1.3E-55 339.8 14.3 151 28-242 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.6 0.00074 1.6E-08 56.8 10.7 105 26-158 11-121 (155)
9 cd09216 GH64-LPHase-like glyco 95.4 0.05 1.1E-06 51.5 7.1 109 27-146 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 90.9 0.61 1.3E-05 44.5 6.3 111 27-146 2-146 (369)
11 cd05468 pVHL von Hippel-Landau 70.4 7.4 0.00016 32.0 4.3 50 24-79 7-56 (141)
12 PF01847 VHL: von Hippel-Linda 68.0 6.3 0.00014 33.4 3.4 49 24-78 13-61 (156)
13 cd09214 GH64-like glycosyl hyd 63.8 4.7 0.0001 37.8 2.0 32 112-146 124-155 (319)
14 PF06282 DUF1036: Protein of u 61.4 12 0.00027 29.7 3.8 42 25-66 3-44 (115)
15 cd09214 GH64-like glycosyl hyd 59.5 5.2 0.00011 37.5 1.6 22 206-227 276-299 (319)
16 cd09220 GH64-GluB-like glycosi 55.3 6.8 0.00015 37.5 1.6 23 205-227 320-344 (369)
17 PHA03094 dUTPase; Provisional 52.6 18 0.0004 29.8 3.6 31 52-82 32-68 (144)
18 cd09216 GH64-LPHase-like glyco 48.9 9.7 0.00021 36.2 1.5 22 206-227 310-333 (353)
19 PHA02703 ORF007 dUTPase; Provi 40.8 92 0.002 26.4 6.1 30 53-82 41-76 (165)
20 PF00947 Pico_P2A: Picornaviru 39.9 20 0.00043 29.4 1.8 38 88-131 83-120 (127)
21 PLN02547 dUTP pyrophosphatase 30.3 71 0.0015 26.8 3.7 29 53-81 44-78 (157)
22 cd07557 trimeric_dUTPase Trime 29.5 67 0.0015 23.5 3.2 27 55-81 13-45 (92)
23 cd00407 Urease_beta Urease bet 28.9 1.6E+02 0.0034 23.2 5.2 55 24-78 20-92 (101)
24 PRK02710 plastocyanin; Provisi 28.7 2.1E+02 0.0045 22.4 6.0 15 53-67 46-60 (119)
25 TIGR00192 urease_beta urease, 27.7 1.7E+02 0.0037 23.1 5.2 55 24-78 20-92 (101)
26 PF01356 A_amylase_inhib: Alph 27.2 78 0.0017 23.1 3.0 38 27-67 16-53 (68)
27 PF11142 DUF2917: Protein of u 26.6 70 0.0015 22.6 2.7 23 56-78 2-29 (63)
28 KOG4710 E3 ubiquitin ligase, V 25.7 1.1E+02 0.0024 26.0 4.0 39 26-67 26-64 (170)
29 PF05991 NYN_YacP: YacP-like N 25.5 23 0.00051 29.7 0.0 10 132-141 2-11 (166)
30 PF07732 Cu-oxidase_3: Multico 24.2 1.2E+02 0.0026 23.8 3.9 53 24-78 34-95 (117)
31 PRK13202 ureB urease subunit b 23.9 2.1E+02 0.0045 22.7 5.0 55 24-78 21-93 (104)
32 PF05726 Pirin_C: Pirin C-term 23.9 78 0.0017 24.2 2.7 26 56-81 4-29 (104)
33 TIGR00576 dut deoxyuridine 5'- 23.6 1.1E+02 0.0024 24.9 3.7 28 54-81 29-62 (141)
34 PRK13203 ureB urease subunit b 22.6 2.3E+02 0.005 22.4 5.0 55 24-78 20-92 (102)
35 PF14874 PapD-like: Flagellar- 20.6 2.3E+02 0.005 20.9 4.7 45 24-68 22-69 (102)
36 PF06650 DUF1162: Protein of u 20.4 1.5E+02 0.0032 26.1 4.2 39 26-68 120-158 (277)
37 PRK00601 dut deoxyuridine 5'-t 20.2 1.2E+02 0.0027 25.0 3.3 29 54-82 38-72 (150)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=7e-86 Score=577.21 Aligned_cols=216 Identities=63% Similarity=1.257 Sum_probs=208.3
Q ss_pred EEEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCCCceeEEeeccccCCCCCCcCcccCCCCCccccCC-
Q 026001 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGRTGCNFDASGTGKCTTGDCGGVLKCTG- 105 (245)
Q Consensus 27 t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~~g~~~C~TGdCgg~~~C~~- 105 (245)
+|||+|||+||||||+++++|++++..+||+|+||++++|++|++|+|||||||+|+||+.|++.|+||||+|.++|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~ 80 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGA 80 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCC
Confidence 5999999999999999999999999899999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEeeCCCCCCceeeeecccccccCceecccCCCCCCccCCCcccccccCCccccccCCCC-ceecccccc
Q 026001 106 GGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVGGKGDCQYAGCVADLNGNCPAELQVTDSGS-VVACKSACA 184 (245)
Q Consensus 106 ~~~pp~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~~g-vv~C~S~C~ 184 (245)
++.||+|||||+|++. +++|||||||||||||||+|+|+++.+.|+.++|.+|||+.||.|||+++.+| +|||||||+
T Consensus 81 ~g~pP~TlaEftl~~~-~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~ 159 (219)
T cd09218 81 GGAPPATLAEFTLGGS-GGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACL 159 (219)
T ss_pred CCCCCceeEEEEeccC-CCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHH
Confidence 8889999999999876 68899999999999999999998776789999999999999999999997667 999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeec-CCCeEEEec
Q 026001 185 AFNTPEFCCTGDHATPDTCSPTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITFC 243 (245)
Q Consensus 185 ~~~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~ts~~tC~-~~~y~VtFC 243 (245)
+|++|||||+|+|++|++|+|+.|+++||++||+||+|||||++++|+|. +++|+||||
T Consensus 160 ~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 160 AFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999998 699999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=3.7e-83 Score=559.99 Aligned_cols=215 Identities=60% Similarity=1.201 Sum_probs=205.3
Q ss_pred EEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCCCc-eeEEeeccccCCCCCCcCcccCCCCCccccCC-
Q 026001 28 FTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWS-GRIWGRTGCNFDASGTGKCTTGDCGGVLKCTG- 105 (245)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~Ws-GriwaRtgCs~d~~g~~~C~TGdCgg~~~C~~- 105 (245)
|||+|||+||||||++++ |++++..+||+|++|+++++++|++|. |||||||+|++|++|++.|+||||+|.++|++
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~ 79 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGW 79 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCC
Confidence 799999999999999998 999888899999999999999999996 99999999999999999999999999999998
Q ss_pred CCCCCcceEEEEeeCCCCCCceeeeecccccccCceecccCCCCCCccCCCcccccccCCccccccCCCCceeccccccc
Q 026001 106 GGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVGGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAA 185 (245)
Q Consensus 106 ~~~pp~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~~gvv~C~S~C~~ 185 (245)
++.||+|||||+|++. +++|||||||||||||||+|.|+++.+.|+..+|.+|||..||.|||+++++.||||||+|.+
T Consensus 80 gg~pP~TlaEftl~~~-~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~ 158 (218)
T smart00205 80 GGRPPATLAEFALNQF-GGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTV 158 (218)
T ss_pred CCCCCcceeEEEecCC-CCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhc
Confidence 8899999999999976 689999999999999999999987777899999999999999999999844339999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeec-CCCeEEEecC
Q 026001 186 FNTPEFCCTGDHATPDTCSPTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITFCP 244 (245)
Q Consensus 186 ~~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~ts~~tC~-~~~y~VtFCP 244 (245)
|++|||||+|+|++|++|+|+.|+++||++||+||+||+||++++|+|+ +++|+|+|||
T Consensus 159 f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 159 FGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred cCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999999998 4999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=1.3e-82 Score=558.51 Aligned_cols=212 Identities=44% Similarity=0.902 Sum_probs=198.2
Q ss_pred EEEEeCCCCcccceeecCCCcc---ccCCCCeecCCCCeEEEecCCCCc-eeEEeeccccCC-CCCCcCcccCCCCCccc
Q 026001 28 FTLENHCSYTVWPGTLCGNGVA---TLGDGGFALPTGASVQFPVPAAWS-GRIWGRTGCNFD-ASGTGKCTTGDCGGVLK 102 (245)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~---~~~~~g~~L~~G~s~s~~~p~~Ws-GriwaRtgCs~d-~~g~~~C~TGdCgg~~~ 102 (245)
|||+|||+||||||+++++|++ .+..+||+|+||++++|.+|++|+ |||||||+|+|| ..|+++|+||||+|.++
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 7999999999999999999998 677899999999999999999997 999999999999 46899999999999999
Q ss_pred cCCCCCCCcceEEEEeeCCCCCCceeeeecccccccCceecccCCCCCCccCCCcccccccCCccccccC-CCC-ceecc
Q 026001 103 CTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVGGKGDCQYAGCVADLNGNCPAELQVTD-SGS-VVACK 180 (245)
Q Consensus 103 C~~~~~pp~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~-~~g-vv~C~ 180 (245)
|++++.||+|||||+|+.. ++|||||||||||||||+|.|.. .|+..+|.+|||..||.|||++. .+| +||||
T Consensus 81 C~~~g~pP~TlaEftL~~~--~~D~YdVSlVDGfNlP~~i~P~~---~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~ 155 (229)
T cd09219 81 CENSDQPPASLAEFTLIGG--KEDNYDISLVDGFNIPLNITNNI---TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCI 155 (229)
T ss_pred cCCCCCCCcceeeEEecCC--CCceeEEEEecccccceEeccCC---CCCCCcccCCCcccCCHHHccccCCCCccceec
Confidence 9988889999999999873 68999999999999999999932 69999999999999999999973 455 89999
Q ss_pred ccccc-cCC--CCCCCCCCCCCCCCCCC--chhhHHHHhhCCCccccccCCCC--CceeecC---CCeEEEecC
Q 026001 181 SACAA-FNT--PEFCCTGDHATPDTCSP--TQYSQLFKHACPTAYSYAYDDAS--STCTCSG---SDYLITFCP 244 (245)
Q Consensus 181 S~C~~-~~~--~~~CC~g~~~~p~~C~~--t~ys~~fK~~CP~AYsya~DD~t--s~~tC~~---~~y~VtFCP 244 (245)
|+|++ |++ |||||+|+|++|++|+| ++|+++||++||+||||||||++ ++|+|++ ++|+|||||
T Consensus 156 SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 156 SPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred CHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 99999 655 99999999999999999 88999999999999999999999 6799985 999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=4.9e-80 Score=539.92 Aligned_cols=211 Identities=59% Similarity=1.210 Sum_probs=178.9
Q ss_pred eCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCCCceeEEeeccccCCCCCCcCcccCCCCCccccCC-CCCCC
Q 026001 32 NHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGRTGCNFDASGTGKCTTGDCGGVLKCTG-GGAPP 110 (245)
Q Consensus 32 N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~~g~~~C~TGdCgg~~~C~~-~~~pp 110 (245)
|||+||||||+++++|++.+..+|++|++|+++++.+|++|+|||||||+|++|+.|+++|+||||+|+++|++ ++.+|
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P 80 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPP 80 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCccc
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999998 88999
Q ss_pred cceEEEEeeCCCCCCceeeeecccccccCceecccCCCCCCccCCCcccccccCCccccccCCCCceeccccccccCCCC
Q 026001 111 VSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVGGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAFNTPE 190 (245)
Q Consensus 111 ~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~~gvv~C~S~C~~~~~~~ 190 (245)
+|||||+|+.. +++|||||||||||||||+|+|++ ...|+..+|.+||+..||.|||++..+++|+|+|+|.++++||
T Consensus 81 ~TlaEftl~~~-~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~ 158 (213)
T PF00314_consen 81 ATLAEFTLNGS-NGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDE 158 (213)
T ss_dssp --EEEEEEEET-TTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHH
T ss_pred ceeEEEEeccC-CCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCCc
Confidence 99999999866 789999999999999999999996 5789999999999999999999998888999999999999999
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeec-CCCeEEEecC
Q 026001 191 FCCTGDHATPDTCSPTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITFCP 244 (245)
Q Consensus 191 ~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~ts~~tC~-~~~y~VtFCP 244 (245)
|||+|+|.+|++|++++|+++||++||+||+|||||.+|+|+|+ +++|+|||||
T Consensus 159 ~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 159 YCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred cccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 99999999999999999999999999999999999999999998 6999999998
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=5.5e-60 Score=395.19 Aligned_cols=155 Identities=50% Similarity=1.066 Sum_probs=142.5
Q ss_pred EEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCCCceeEEeeccccCCC-CCCcCcccCCCCCccccCCC
Q 026001 28 FTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGRTGCNFDA-SGTGKCTTGDCGGVLKCTGG 106 (245)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~-~g~~~C~TGdCgg~~~C~~~ 106 (245)
|||+|||+||||||+++++|++ +..+||+|+||+++++.+|++|+|||||||+|+||+ .|++.|+||||+|+++|+++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~ 79 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGT 79 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCCC
Confidence 6899999999999999999997 778999999999999999999999999999999998 79999999999999999987
Q ss_pred CCCCcceEEEEeeCCCCCCceeeeecccccccCceecccCCCCCCccCCCcccccccCCccccccCCCCceecccccccc
Q 026001 107 GAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVGGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAF 186 (245)
Q Consensus 107 ~~pp~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~~gvv~C~S~C~~~ 186 (245)
+.||+|||||+|++. +++|||||||||||||||+|+|++ +.|+..+|.+
T Consensus 80 g~pp~TlaEftl~~~-~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~---------------------------- 128 (157)
T cd09215 80 GGPPATLAEFTLSGG-GGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA---------------------------- 128 (157)
T ss_pred CCCCcceEEEEecCC-CCcceeEEEeeccccCCEEEecCC--CCCCCCcccc----------------------------
Confidence 779999999999976 678999999999999999999975 2355444431
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeec-CCCeEEEec
Q 026001 187 NTPEFCCTGDHATPDTCSPTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITFC 243 (245)
Q Consensus 187 ~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~ts~~tC~-~~~y~VtFC 243 (245)
||+||+|||||++++|+|+ +++|+|+||
T Consensus 129 -----------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 -----------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred -----------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 9999999999999999998 599999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=3e-52 Score=346.95 Aligned_cols=149 Identities=54% Similarity=1.132 Sum_probs=133.4
Q ss_pred EEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCC-CceeEEeeccccCCCCCCcCcccCCCCCccccCCC
Q 026001 28 FTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAA-WSGRIWGRTGCNFDASGTGKCTTGDCGGVLKCTGG 106 (245)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~-WsGriwaRtgCs~d~~g~~~C~TGdCgg~~~C~~~ 106 (245)
|+|+|||+||||||+++ ..+||+|++|+++++++|++ |+|||||||+|+||+.|++.|+||||+|+++|+++
T Consensus 1 ~~~~N~C~~tvWp~~~~-------~~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~ 73 (151)
T cd09217 1 FTITNNCGYTVWPAATP-------VGGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGS 73 (151)
T ss_pred CEEEeCCCCcccceEec-------CCCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecCCC
Confidence 68999999999999987 24799999999999999997 99999999999999999999999999999999987
Q ss_pred CCCCcceEEEEeeCCCCCCceeeeecccccccCceecccCCCCCCccCCCcccccccCCccccccCCCCceecccccccc
Q 026001 107 GAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVGGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAF 186 (245)
Q Consensus 107 ~~pp~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~~gvv~C~S~C~~~ 186 (245)
+.||+||+||+|+. +++||||||+||||||||+|+|+++ .|+.++|..
T Consensus 74 g~pp~Tl~E~tl~~--~~~d~YdISlVdG~NlP~~i~P~~~--~C~~~~C~~---------------------------- 121 (151)
T cd09217 74 GKPPATLAEYTLNQ--SGQDFYDISLVDGFNVPMDFSPTGG--GCHAIPCAA---------------------------- 121 (151)
T ss_pred CCCCceeEEEEecC--CCCccEEEEeecccccceEEecCCC--CCCCCcCCC----------------------------
Confidence 88999999999975 4689999999999999999999742 255444432
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeec-CCCeEEEecC
Q 026001 187 NTPEFCCTGDHATPDTCSPTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITFCP 244 (245)
Q Consensus 187 ~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~ts~~tC~-~~~y~VtFCP 244 (245)
+ ||+||+|++|| .++++|+ +++|+|||||
T Consensus 122 ---------------------------d-C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------------------------N-CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------------------------C-CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999995 7999998 7999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=5.9e-51 Score=339.77 Aligned_cols=151 Identities=44% Similarity=0.757 Sum_probs=135.4
Q ss_pred EEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCCCceeEEeeccccCCCCCCcCcccCCCCCccccCC-C
Q 026001 28 FTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGRTGCNFDASGTGKCTTGDCGGVLKCTG-G 106 (245)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~~g~~~C~TGdCgg~~~C~~-~ 106 (245)
|||+|||+|||||+++++++++.+..+|++|+||++++|++|+.|+||||+||+|+++..|++.|+||||++ +.|.+ +
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~ 79 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPN 79 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCC
Confidence 689999999999999999988877789999999999999999999999999999999988999999999998 67776 8
Q ss_pred CCCCcceEEEEeeCCCCCCceeeeecccccccCceecccCCCCCCccCCCcccccccCCccccccCCCCceecccccccc
Q 026001 107 GAPPVSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVGGKGDCQYAGCVADLNGNCPAELQVTDSGSVVACKSACAAF 186 (245)
Q Consensus 107 ~~pp~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~~gvv~C~S~C~~~ 186 (245)
+.||+|||||+|++. +++||||||+||||||||+|+|+.+.+ .|+
T Consensus 80 g~pp~TlaEfTl~~~-~~~dfydISlVDGfNlP~~i~p~~~~g----------------------------~C~------ 124 (153)
T cd08961 80 RDPPFTLAEFTLNDF-NSGDFIDSSLVDGFNAPMTVGPRRGDG----------------------------TCL------ 124 (153)
T ss_pred CCCCcceEEEEecCC-CCcceEEEEeecccCCCEEEEeccCCC----------------------------Ccc------
Confidence 889999999999875 678999999999999999999975322 122
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeec-CCCeEEEe
Q 026001 187 NTPEFCCTGDHATPDTCSPTQYSQLFKHACPTAYSYAYDDASSTCTCS-GSDYLITF 242 (245)
Q Consensus 187 ~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~ts~~tC~-~~~y~VtF 242 (245)
+.. |||+|||||..++|+|+ +.+|.|+|
T Consensus 125 ------------------~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 125 ------------------STG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ------------------ccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 111 89999999988999998 79999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.63 E-value=0.00074 Score=56.80 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=61.6
Q ss_pred eEEEEEeCCCCcccceeecCCCccccCCCCeecCC--CCeEEEec-CCCCceeEEeeccccCCCCCCcCcccCCCCCccc
Q 026001 26 TVFTLENHCSYTVWPGTLCGNGVATLGDGGFALPT--GASVQFPV-PAAWSGRIWGRTGCNFDASGTGKCTTGDCGGVLK 102 (245)
Q Consensus 26 ~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~--G~s~s~~~-p~~WsGriwaRtgCs~d~~g~~~C~TGdCgg~~~ 102 (245)
-+-+|+|+|.|+|++=..+.... .-..|.+ ++..+-.. +..+.|.=---| ..|+
T Consensus 11 G~AiV~N~C~~~VyLWSvg~~vs-----~~~~l~~~~~~~~~e~~r~~~gGGisLKIt--~~dG---------------- 67 (155)
T PF04681_consen 11 GNAIVVNNCDFPVYLWSVGSSVS-----PMQTLQGRSGSYYEEFYRDPSGGGISLKIT--TTDG---------------- 67 (155)
T ss_pred cceEEEECCCCCEEEEEecCCcC-----cceEEcCCCCccEeEEccCCCCCcEEEEEe--cCCC----------------
Confidence 44568999999999855543322 2345543 33323222 223444211111 0011
Q ss_pred cCCCCCCCcceEEEEeeCCCCCCceeeeecccccc---cCceecccCCCCCCccCCCcc
Q 026001 103 CTGGGAPPVSLVEFTIANNPNEKDFYDVSLVDGYN---IGLGVKAVGGKGDCQYAGCVA 158 (245)
Q Consensus 103 C~~~~~pp~TlaEftl~~~~~~~d~YDVSlVdG~N---lP~~i~p~~g~~~C~~~~C~~ 158 (245)
.....|.|..|++|... +.+-|||+|.|.|.. -+|.|.|.+. .|.++.|..
T Consensus 68 --l~t~~pqt~FaYtL~~d-~~~VwYDLSdvfGdPF~G~~v~v~ps~~--~Cp~I~Wp~ 121 (155)
T PF04681_consen 68 --LYTGSPQTIFAYTLVDD-NNQVWYDLSDVFGDPFAGHKVTVNPSDP--SCPSIVWPN 121 (155)
T ss_pred --CcCCCceeEEEEEecCC-CceEEEECccccCCCcCCCEEEEecCCC--CCCceECCC
Confidence 01124789999999864 568999999999863 3577778763 587777654
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.38 E-value=0.05 Score=51.48 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=64.8
Q ss_pred EEEEEeCCCC--cccceeecCC---Cc------------cccC------CC--Ceec-CCCCeEEEecCCCCceeEEeec
Q 026001 27 VFTLENHCSY--TVWPGTLCGN---GV------------ATLG------DG--GFAL-PTGASVQFPVPAAWSGRIWGRT 80 (245)
Q Consensus 27 t~ti~N~C~~--tVwp~~~~~~---g~------------~~~~------~~--g~~L-~~G~s~s~~~p~~WsGriwaRt 80 (245)
.|+|+||=+. +||..+++.+ |+ +... .. ...| ++|++.++.+|. ++||||=..
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4789999977 8998887532 21 0000 01 1223 367888999998 999999753
Q ss_pred cccCCCCCCcCcccCCCCCccccCC---CCCCC----cceEEEEeeCCCCCCceeeeecccccccCceecccC
Q 026001 81 GCNFDASGTGKCTTGDCGGVLKCTG---GGAPP----VSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVG 146 (245)
Q Consensus 81 gCs~d~~g~~~C~TGdCgg~~~C~~---~~~pp----~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 146 (245)
+=.. .|.=. . +..+.-.. ..-|- -..+|||++.. .-|-++|.||-|.+||.|+-.+
T Consensus 81 g~~L----~F~~~-~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~---gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSKL----RFKVV-T--NPALVQPAGWNPSDPNFNILHDWVEFTFNDA---GLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCee----EEEec-C--CCcccCCCCCCCCCCCccceEEEEEEEecCC---ceEecccceeeeccceEEEEec
Confidence 3110 11111 1 11111111 01111 13589999853 4689999999999999998664
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=90.86 E-value=0.61 Score=44.51 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=65.0
Q ss_pred EEEEEeCCCC-cccceeecC---CCc--------------------cccCCCC--eecC-CCCeEEEecCCCCceeEEee
Q 026001 27 VFTLENHCSY-TVWPGTLCG---NGV--------------------ATLGDGG--FALP-TGASVQFPVPAAWSGRIWGR 79 (245)
Q Consensus 27 t~ti~N~C~~-tVwp~~~~~---~g~--------------------~~~~~~g--~~L~-~G~s~s~~~p~~WsGriwaR 79 (245)
.|+|+|+=+. +|+.-|++. .|+ +...... .-|. +|++.+++||.-++||||=.
T Consensus 2 ~l~l~N~~~~~~vyaYitG~~~~~~~~~~l~adG~~~~~~~~~~~~~~~~~~d~aIpl~~~G~~~titiP~i~sgRIyfS 81 (369)
T cd09220 2 PLALVNNSGSGTVYAYITGLDLNNNRVVFLRADGSTYYPPSSPSAVPSPLGADCAIPLGAPGSTTTVTIPILAGGRIWFS 81 (369)
T ss_pred cEEEEecCCCCcEEEEEeceecCCCcEEEEeCCCcEeCCCCCccccCCCCCcceeeecCCCCCceeEEcccccceEEEEE
Confidence 4788888875 788877653 121 0000111 2232 58889999999899999974
Q ss_pred ccccCCCCCCcCcccCCCC-CccccCC-C-CCCC----cceEEEEeeCCCCCCceeeeecccccccCceecccC
Q 026001 80 TGCNFDASGTGKCTTGDCG-GVLKCTG-G-GAPP----VSLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVG 146 (245)
Q Consensus 80 tgCs~d~~g~~~C~TGdCg-g~~~C~~-~-~~pp----~TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 146 (245)
.+=.. .|. ...+ + +..+-.- . .-|- -..+|||++. ..-|=++|.||-|.+||.|+-.+
T Consensus 82 ~g~~L----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~---~~l~~N~S~VD~~~~P~~l~l~~ 146 (369)
T cd09220 82 VDDKL----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS---GQLYANISYVDFVGLPLGLSLTT 146 (369)
T ss_pred cCCeE----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC---CceEecccceeeeccCeEEEEEc
Confidence 33110 111 1111 1 1111110 0 1111 1358999985 35689999999999999998654
No 11
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=70.40 E-value=7.4 Score=32.03 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=39.2
Q ss_pred cceEEEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCCCceeEEee
Q 026001 24 TATVFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWGR 79 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaR 79 (245)
....|+|+|+.+.+|-+-|.-..|.+.... .|+||+...+. .+.|..|--
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~---~l~pg~~~~~~---Ty~~H~W~~ 56 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSYG---TLQPGETVRQN---TYVGHPWLF 56 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEee---eeCCCCEEeec---ccCCCcEEE
Confidence 457899999999999999998888765433 69999997654 466777763
No 12
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=68.02 E-value=6.3 Score=33.37 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=32.3
Q ss_pred cceEEEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEecCCCCceeEEe
Q 026001 24 TATVFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPVPAAWSGRIWG 78 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwa 78 (245)
....++|+|+++.+|-+-|....|.+.... .|+||+...++ .+.|..|=
T Consensus 13 ~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y~---~L~Pg~~~~~~---TY~tHpW~ 61 (156)
T PF01847_consen 13 EPSFVRFVNRSPRTVDVYWLDYDGKPVPYG---TLKPGQGRRQN---TYVTHPWV 61 (156)
T ss_dssp SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEE---EETT-EEE
T ss_pred CceEEEEEECCCCEEEEEEEcCCCcEeecc---ccCCCCeEEcc---cccCCcEE
Confidence 457899999999999999988888876553 59999998876 35566664
No 13
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=63.79 E-value=4.7 Score=37.82 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=27.4
Q ss_pred ceEEEEeeCCCCCCceeeeecccccccCceecccC
Q 026001 112 SLVEFTIANNPNEKDFYDVSLVDGYNIGLGVKAVG 146 (245)
Q Consensus 112 TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 146 (245)
..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~---~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNA---TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecC---CceEecccceeeeccCeEEEEEc
Confidence 358999985 47899999999999999998775
No 14
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=61.37 E-value=12 Score=29.70 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=32.5
Q ss_pred ceEEEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEE
Q 026001 25 ATVFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQF 66 (245)
Q Consensus 25 ~~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~ 66 (245)
.+-|+|-|+-++.|++++.-..+......|-+.|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 356899999999999999654444444566789999998766
No 15
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=59.50 E-value=5.2 Score=37.50 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=19.7
Q ss_pred chhhHHHHhhCC--CccccccCCC
Q 026001 206 TQYSQLFKHACP--TAYSYAYDDA 227 (245)
Q Consensus 206 t~ys~~fK~~CP--~AYsya~DD~ 227 (245)
+.|++++++.-. .||.|||||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 489999999997 6999999995
No 16
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=55.29 E-value=6.8 Score=37.51 Aligned_cols=23 Identities=30% Similarity=0.791 Sum_probs=20.3
Q ss_pred CchhhHHHHhhCC--CccccccCCC
Q 026001 205 PTQYSQLFKHACP--TAYSYAYDDA 227 (245)
Q Consensus 205 ~t~ys~~fK~~CP--~AYsya~DD~ 227 (245)
-+.|++++++.-+ .+|.|||||-
T Consensus 320 tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 320 TNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred chHHHHHHHHhccCCCeeccccccc
Confidence 3589999999998 6899999996
No 17
>PHA03094 dUTPase; Provisional
Probab=52.61 E-value=18 Score=29.76 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=25.2
Q ss_pred CCCCeecCCCCeEE------EecCCCCceeEEeeccc
Q 026001 52 GDGGFALPTGASVQ------FPVPAAWSGRIWGRTGC 82 (245)
Q Consensus 52 ~~~g~~L~~G~s~s------~~~p~~WsGriwaRtgC 82 (245)
....+.|.||+... +.+|.+|.|.|++|.+-
T Consensus 32 a~~~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 32 SAYDYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred cCCCeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 34467899999876 77999999999999754
No 18
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=48.86 E-value=9.7 Score=36.25 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=19.4
Q ss_pred chhhHHHHhhCC--CccccccCCC
Q 026001 206 TQYSQLFKHACP--TAYSYAYDDA 227 (245)
Q Consensus 206 t~ys~~fK~~CP--~AYsya~DD~ 227 (245)
+.|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 489999999987 5899999995
No 19
>PHA02703 ORF007 dUTPase; Provisional
Probab=40.77 E-value=92 Score=26.37 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=23.7
Q ss_pred CCCeecCCCCeE------EEecCCCCceeEEeeccc
Q 026001 53 DGGFALPTGASV------QFPVPAAWSGRIWGRTGC 82 (245)
Q Consensus 53 ~~g~~L~~G~s~------s~~~p~~WsGriwaRtgC 82 (245)
.....|+||+.. .+.+|++|.|.|++|.+-
T Consensus 41 ~~d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsl 76 (165)
T PHA02703 41 ACDCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGL 76 (165)
T ss_pred CCCeEECCCCEEEEeCCeEEEcCCCeEEEEECCccc
Confidence 345788999873 566899999999999654
No 20
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=39.91 E-value=20 Score=29.36 Aligned_cols=38 Identities=34% Similarity=0.756 Sum_probs=22.5
Q ss_pred CCcCcccCCCCCccccCCCCCCCcceEEEEeeCCCCCCceeeee
Q 026001 88 GTGKCTTGDCGGVLKCTGGGAPPVSLVEFTIANNPNEKDFYDVS 131 (245)
Q Consensus 88 g~~~C~TGdCgg~~~C~~~~~pp~TlaEftl~~~~~~~d~YDVS 131 (245)
|.+.|+-|||||.|.|..+ ...-.|.++. +-..|=||.
T Consensus 83 g~Gp~~PGdCGg~L~C~HG-----ViGi~Tagg~-g~VaF~dir 120 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKHG-----VIGIVTAGGE-GHVAFADIR 120 (127)
T ss_dssp EE-SSSTT-TCSEEEETTC-----EEEEEEEEET-TEEEEEECC
T ss_pred ecccCCCCCCCceeEeCCC-----eEEEEEeCCC-ceEEEEech
Confidence 4578999999999999742 2334444443 334555554
No 21
>PLN02547 dUTP pyrophosphatase
Probab=30.29 E-value=71 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCeecCCCCeE------EEecCCCCceeEEeecc
Q 026001 53 DGGFALPTGASV------QFPVPAAWSGRIWGRTG 81 (245)
Q Consensus 53 ~~g~~L~~G~s~------s~~~p~~WsGriwaRtg 81 (245)
...+.|.|++.. .+.+|.+|.|.|++|.+
T Consensus 44 ~~d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSg 78 (157)
T PLN02547 44 AYDTVVPARGKALVPTDLSIAIPEGTYARIAPRSG 78 (157)
T ss_pred CCCeEECCCCEEEEEeceEEEcCCCeEEEEEcccc
Confidence 345678888875 45689999999999965
No 22
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=29.55 E-value=67 Score=23.54 Aligned_cols=27 Identities=30% Similarity=0.727 Sum_probs=20.1
Q ss_pred CeecCCCCeEE------EecCCCCceeEEeecc
Q 026001 55 GFALPTGASVQ------FPVPAAWSGRIWGRTG 81 (245)
Q Consensus 55 g~~L~~G~s~s------~~~p~~WsGriwaRtg 81 (245)
.+.|.|++..- +.+|.++.|.|++|.+
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs 45 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSS 45 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCch
Confidence 36777777543 4578899999999864
No 23
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.90 E-value=1.6e+02 Score=23.24 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=37.6
Q ss_pred cceEEEEEeCCCCcccceee-----cCC----------Cc--cccCCCCeecCCCCeEEEec-CCCCceeEEe
Q 026001 24 TATVFTLENHCSYTVWPGTL-----CGN----------GV--ATLGDGGFALPTGASVQFPV-PAAWSGRIWG 78 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~-----~~~----------g~--~~~~~~g~~L~~G~s~s~~~-p~~WsGriwa 78 (245)
...+++|+|.-.-+|++|.. .|. |. .-+.++..+.+||+++++++ |-+=..+|+|
T Consensus 20 ~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 20 EAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred CEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 57899999999999999973 121 11 00145667889999999986 3333446666
No 24
>PRK02710 plastocyanin; Provisional
Probab=28.68 E-value=2.1e+02 Score=22.41 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=10.3
Q ss_pred CCCeecCCCCeEEEe
Q 026001 53 DGGFALPTGASVQFP 67 (245)
Q Consensus 53 ~~g~~L~~G~s~s~~ 67 (245)
+.-..+++|++.++.
T Consensus 46 P~~i~v~~Gd~V~~~ 60 (119)
T PRK02710 46 PSTLTIKAGDTVKWV 60 (119)
T ss_pred CCEEEEcCCCEEEEE
Confidence 345677888876664
No 25
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=27.68 E-value=1.7e+02 Score=23.05 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=37.5
Q ss_pred cceEEEEEeCCCCcccceee-----cCC----------Cc-cc-cCCCCeecCCCCeEEEec-CCCCceeEEe
Q 026001 24 TATVFTLENHCSYTVWPGTL-----CGN----------GV-AT-LGDGGFALPTGASVQFPV-PAAWSGRIWG 78 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~-----~~~----------g~-~~-~~~~g~~L~~G~s~s~~~-p~~WsGriwa 78 (245)
...++.|+|.-.-+|++|.. .|. |. -. +.++..+.+||+++++++ |-+=..+|+|
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 20 KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred cEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 57899999999999999963 121 11 00 145567788999999986 3333446666
No 26
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=27.24 E-value=78 Score=23.10 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=23.4
Q ss_pred EEEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEe
Q 026001 27 VFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFP 67 (245)
Q Consensus 27 t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~ 67 (245)
=-.+.|+|+.+|-+-+.=.+|...+ -..++||+-.++-
T Consensus 16 YT~v~N~Ca~tvsVtV~Y~dG~~~P---Crv~~PG~~~Tf~ 53 (68)
T PF01356_consen 16 YTDVTNGCADTVSVTVEYTDGQEVP---CRVIPPGDIATFP 53 (68)
T ss_dssp EEEEEE-SSS-EEEEEEETTS-CEE---EEEE-TTEEEEEE
T ss_pred EEEeeCCCcccEEEEEEEeCCCcce---eEEeCCCCEEEec
Confidence 3458999999998887655554322 4678888876654
No 27
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=26.62 E-value=70 Score=22.63 Aligned_cols=23 Identities=35% Similarity=0.719 Sum_probs=17.2
Q ss_pred eecCCCCeEEEecCCCC-----ceeEEe
Q 026001 56 FALPTGASVQFPVPAAW-----SGRIWG 78 (245)
Q Consensus 56 ~~L~~G~s~s~~~p~~W-----sGriwa 78 (245)
|.|.+|+..++....+. +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 67888888888876653 488886
No 28
>KOG4710 consensus E3 ubiquitin ligase, VHL component (von Hippel-Lindau tumor suppressor in humans) [Posttranslational modification, protein turnover, chaperones]
Probab=25.66 E-value=1.1e+02 Score=25.99 Aligned_cols=39 Identities=15% Similarity=-0.088 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEe
Q 026001 26 TVFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFP 67 (245)
Q Consensus 26 ~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~ 67 (245)
..+.|-|.|.++|-|.|+...+.|+... .|+|++...|.
T Consensus 26 v~V~F~Nr~~r~vd~~Wln~~~~p~~Y~---TL~p~~~~rI~ 64 (170)
T KOG4710|consen 26 VYVLFANRTYRTVDLYWLNERERPNMYL---TLKPFEEVRIN 64 (170)
T ss_pred EEEEEecCCCceeeeEEECCCCCCCccc---ccCCCcceeee
Confidence 5688999999999999998888776544 68899887765
No 29
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=25.48 E-value=23 Score=29.69 Aligned_cols=10 Identities=50% Similarity=0.896 Sum_probs=7.8
Q ss_pred cccccccCce
Q 026001 132 LVDGYNIGLG 141 (245)
Q Consensus 132 lVdG~NlP~~ 141 (245)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899997554
No 30
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=24.24 E-value=1.2e+02 Score=23.77 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=34.5
Q ss_pred cceEEEEEeCCCCcccceeecC--------CCccccCCCCeecCCCCeEEEecCCCC-ceeEEe
Q 026001 24 TATVFTLENHCSYTVWPGTLCG--------NGVATLGDGGFALPTGASVQFPVPAAW-SGRIWG 78 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~~~--------~g~~~~~~~g~~L~~G~s~s~~~p~~W-sGriwa 78 (245)
+...|+|+|+-+.+.-.-+.+- +|.+. ..-..+.||+++++.++..= .|.+|=
T Consensus 34 d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~--~~~~~i~pG~~~~Y~~~~~~~~Gt~wY 95 (117)
T PF07732_consen 34 DTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPG--VTQCPIAPGESFTYEFTANQQAGTYWY 95 (117)
T ss_dssp EEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTT--TSGSSBSTTEEEEEEEEESSCSEEEEE
T ss_pred CeeEEEEEeccccccccccceeeeeeeeecCCccc--ccceeEEeecceeeeEeeeccccceeE
Confidence 5678999999988765544321 12211 12246889999888876555 788884
No 31
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.95 E-value=2.1e+02 Score=22.68 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=37.0
Q ss_pred cceEEEEEeCCCCcccceee-----cCC----------Cc-cc-cCCCCeecCCCCeEEEec-CCCCceeEEe
Q 026001 24 TATVFTLENHCSYTVWPGTL-----CGN----------GV-AT-LGDGGFALPTGASVQFPV-PAAWSGRIWG 78 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~-----~~~----------g~-~~-~~~~g~~L~~G~s~s~~~-p~~WsGriwa 78 (245)
...+++|+|.-.-+|++|.. .|. |. -. +.++....+||+++++++ |-+=..+|+|
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 93 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRREVPG 93 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeEEEc
Confidence 35799999999999999963 121 11 00 145567788999999986 3333446666
No 32
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=23.91 E-value=78 Score=24.16 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=19.9
Q ss_pred eecCCCCeEEEecCCCCceeEEeecc
Q 026001 56 FALPTGASVQFPVPAAWSGRIWGRTG 81 (245)
Q Consensus 56 ~~L~~G~s~s~~~p~~WsGriwaRtg 81 (245)
..|++|++.++.+|.+|..-++...|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57899999999999999998888764
No 33
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=23.63 E-value=1.1e+02 Score=24.88 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=21.4
Q ss_pred CCeecCCCCeE------EEecCCCCceeEEeecc
Q 026001 54 GGFALPTGASV------QFPVPAAWSGRIWGRTG 81 (245)
Q Consensus 54 ~g~~L~~G~s~------s~~~p~~WsGriwaRtg 81 (245)
....|.||++. .+.+|.+|.|.|++|.+
T Consensus 29 ~d~~i~P~~~~lv~tg~~v~ip~g~~~~i~~RSs 62 (141)
T TIGR00576 29 EDVTIPPGERALVPTGIAIELPDGYYGRVAPRSG 62 (141)
T ss_pred CCeEECCCCEEEEEeCcEEecCCCEEEEEEeccc
Confidence 35678888765 35579999999999964
No 34
>PRK13203 ureB urease subunit beta; Reviewed
Probab=22.63 E-value=2.3e+02 Score=22.38 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=37.4
Q ss_pred cceEEEEEeCCCCcccceee-----cCC----------Cc-cc-cCCCCeecCCCCeEEEec-CCCCceeEEe
Q 026001 24 TATVFTLENHCSYTVWPGTL-----CGN----------GV-AT-LGDGGFALPTGASVQFPV-PAAWSGRIWG 78 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~-----~~~----------g~-~~-~~~~g~~L~~G~s~s~~~-p~~WsGriwa 78 (245)
...+++|+|.-.-+|++|.. .|. |. -. +.++..+.+||+++++++ +-+=..+|+|
T Consensus 20 ~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 20 ETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred CEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 57899999999999999973 121 11 00 145567788999999986 3333446666
No 35
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=20.59 E-value=2.3e+02 Score=20.85 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=28.4
Q ss_pred cceEEEEEeCCCCcccceeecCC-Ccccc--CCCCeecCCCCeEEEec
Q 026001 24 TATVFTLENHCSYTVWPGTLCGN-GVATL--GDGGFALPTGASVQFPV 68 (245)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~~~~-g~~~~--~~~g~~L~~G~s~s~~~ 68 (245)
...+|+|+|....+.-.-+.... ....+ ....-.|+||++.++.+
T Consensus 22 ~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V 69 (102)
T PF14874_consen 22 YSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEV 69 (102)
T ss_pred EEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEE
Confidence 57899999999887655443221 11111 12233699999988876
No 36
>PF06650 DUF1162: Protein of unknown function (DUF1162); InterPro: IPR009543 Proteins in this entry may play a role in the control of protein cycling through the trans-Golgi network. Vacuolar sorting protein is an ATPase required for endosomal trafficking []. Defects in the human protein VPS13A cause chorea-acanthocytosis, an autosomal recessive neurodegenerative disorder characterised by the gradual onset of hyperkinetic movements and abnormal erythrocyte morphology [].; GO: 0008104 protein localization
Probab=20.44 E-value=1.5e+02 Score=26.06 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCcccceeecCCCccccCCCCeecCCCCeEEEec
Q 026001 26 TVFTLENHCSYTVWPGTLCGNGVATLGDGGFALPTGASVQFPV 68 (245)
Q Consensus 26 ~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~ 68 (245)
-.+.|+|+.+++|+..-..... ......|+||+..-+..
T Consensus 120 Pryii~N~t~~~i~i~q~~~~~----~~~~~~l~pg~~~p~~~ 158 (277)
T PF06650_consen 120 PRYIIVNRTGFPIRIRQCGSPD----DDEWITLPPGESVPFHW 158 (277)
T ss_pred CCEEEEECCCCCEEEEECcccC----CCceEEecCCCCEEEEc
Confidence 3467899999999976543210 12356788888765543
No 37
>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=20.22 E-value=1.2e+02 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCeecCCCCeE------EEecCCCCceeEEeeccc
Q 026001 54 GGFALPTGASV------QFPVPAAWSGRIWGRTGC 82 (245)
Q Consensus 54 ~g~~L~~G~s~------s~~~p~~WsGriwaRtgC 82 (245)
....|.||++. .+.+|.++.|.|++|.+-
T Consensus 38 ~~i~i~P~~~~lv~tg~~v~~p~~~~~~i~~RSsl 72 (150)
T PRK00601 38 EPVTLAPGERALVPTGLAIHIPDGYEAQILPRSGL 72 (150)
T ss_pred CCCEECCCCeEEEEcCEEEECCCCeEEEEEeCCcc
Confidence 36778888875 455788999999999653
Done!