BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026002
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
Length = 299
Score = 352 bits (902), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 157/231 (67%), Positives = 192/231 (83%), Gaps = 2/231 (0%)
Query: 2 WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
W R L+L QL+NG L WGKEGH+ +CKIAE Y E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8 WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67
Query: 62 ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
DE++ H RW+SPLHYVDTPD+ CNY+YCRDCHD+ ++RCVTGAI+NYTMQL S
Sbjct: 68 PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127
Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
++S ++ YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187
Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
II+SALKTYY+ + +MI+++Q N+T+ WSNDV WE+C NQT CPN YA
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYA 238
>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1
Length = 296
Score = 298 bits (763), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 136/233 (58%), Positives = 180/233 (77%), Gaps = 3/233 (1%)
Query: 1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
+WI L+L LV+G L WGK+GH+ +CK+AEG+ +D +AAVK+LLP+S +G LA+ C
Sbjct: 3 LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62
Query: 60 SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
SW DE++ +W+S LHYV+TP++ CNY+YCRDCHD+ K+ CVTGAI+NYT QL S
Sbjct: 63 SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122
Query: 118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
++S ++ YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY K+NLHHVWD
Sbjct: 123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182
Query: 178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
MIIDSAL+TYY+S + MIQ++Q + +GWSNDV SW++C +Q CPN YA
Sbjct: 183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYA 235
>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1
Length = 294
Score = 296 bits (759), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 140/232 (60%), Positives = 172/232 (74%), Gaps = 7/232 (3%)
Query: 1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
MWI L+L QLVNG L WG GH+A+CKIA+ Y ED + AVK+LLP+SA G+LA VCS
Sbjct: 7 MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66
Query: 61 WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
W DE++ RW+S LH+ DTPD+ CNY+Y RDC K+ CVTGAI+NYT QL S
Sbjct: 67 WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDC-----PKDWCVTGAIFNYTNQLMST 121
Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
++S S+ YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD
Sbjct: 122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181
Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
MII+SAL+TYY+S + MI +Q + +GWSNDV SWE+C NQT CPN YA
Sbjct: 182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYA 233
>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1
Length = 290
Score = 266 bits (680), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 158/222 (71%), Gaps = 2/222 (0%)
Query: 9 LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
LL + GWGKEGH ICKIA+ L E A AVKELLP+SAEGDL+++C WAD V+F
Sbjct: 18 LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77
Query: 69 MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
WSSPLHY++TPD C+Y+Y RDC D G K RCV GAIYNYT QL S + S +Y
Sbjct: 78 YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136
Query: 129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
NLTEAL+F+SHF+GD+HQPLHV + DKGGNTI V WY RK NLHH+WD+ II++A
Sbjct: 137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196
Query: 189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
Y+S + M+ ++++NIT W++ V WE C +T CP+ YA
Sbjct: 197 YNSALEGMVDALKKNITTEWADQVKRWETC-TKKTACPDIYA 237
>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1
Length = 305
Score = 241 bits (615), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 155/221 (70%), Gaps = 5/221 (2%)
Query: 13 VNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMR 70
V+ V W KEGH C+IA+ L V+ LLPD +GDL+ +C W D++R + R
Sbjct: 23 VSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYR 82
Query: 71 WSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNL 130
W+S LHY+DTPD C+Y+Y RDCHD G K+ CV GAI N+T QL+ Y + S +YN+
Sbjct: 83 WTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTSDRRYNM 141
Query: 131 TEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYD 190
TEAL+FLSHF+GD+HQP+HVGF D+GGNTI +RWY+ K+NLHHVWD II +ALK YD
Sbjct: 142 TEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYD 201
Query: 191 SDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYA 230
++ ++ + +++NIT+G W +D+SSW C N+ CP+ YA
Sbjct: 202 KNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPHKYA 241
>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=nucS PE=1 SV=2
Length = 287
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 102/217 (47%), Gaps = 24/217 (11%)
Query: 10 LQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF-- 67
L L GWG GH + IA+ ++ + + +L D + LANV +WAD ++
Sbjct: 12 LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71
Query: 68 HMRWSSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
+S P H++D P C Y RDC S G C AI NYT +I
Sbjct: 72 AGEFSKPYHFIDAQDNPPQSCGVDYDRDCG-SAG----CSISAIQNYT---------NIL 117
Query: 125 VEKYNLTE---ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMII 181
+E N +E AL F+ H IGD+HQPLH + + GGN I V + TNLHH+WDT +
Sbjct: 118 LESPNGSEALNALKFVVHIIGDIHQPLHDENL-EAGGNGIDVTYDGETTNLHHIWDTNMP 176
Query: 182 DSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWEN 217
+ A Y S + I G +S+ SW +
Sbjct: 177 EEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTD 213
>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1
Length = 270
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)
Query: 19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
WG GH + +A+ Y++ +A + + +L S+ LA++ SWADE R +WS+ LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 77 YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
++D P CN Y RDC S C AI NYT ++ S+ N EA
Sbjct: 61 FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110
Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
L FL HFIGD+ QPLH GGN I V + NLH WDT + + + SD
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 194 AVMIQSIQRNITDG 207
+++ +NI G
Sbjct: 170 ESWAKTLVQNIESG 183
>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1
Length = 270
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)
Query: 19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
WG GH + +A+ Y++ +A + + +L S+ LA++ SWADE R +WS+ LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 77 YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
++D P CN Y RDC S C AI NYT ++ S+ N EA
Sbjct: 61 FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110
Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
L FL HFIGD+ QPLH GGN I V + NLH WDT + + + SD
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 194 AVMIQSIQRNITDG 207
+++ +NI G
Sbjct: 170 ESWAKTLVQNIESG 183
>sp|B0D5R2|COQ4_LACBS Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Laccaria
bicolor (strain S238N-H82 / ATCC MYA-4686) GN=COQ4 PE=3
SV=1
Length = 297
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 74 PLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
P+HY+D P+ + R+CHD C+ N +L Y E NL
Sbjct: 158 PVHYIDDPELAYVMQRYRECHDFY----HCICNLPVNVESELALKY-----FEFANLGLP 208
Query: 134 LMFLSHFIGDV------HQPLHVGFI------GDKGGNTITVRWYRR 168
+ LS +G V Q L F+ G + ITV W R
Sbjct: 209 MTLLSALVGPVRLTPQKRQRLFAEFVPWALKCGGSSRSLITVYWEER 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,105,538
Number of Sequences: 539616
Number of extensions: 3909663
Number of successful extensions: 7534
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7506
Number of HSP's gapped (non-prelim): 11
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)