Query 026002
Match_columns 245
No_of_seqs 150 out of 518
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02265 S1-P1_nuclease: S1/P1 100.0 2.4E-54 5.2E-59 380.6 8.6 203 19-241 1-209 (252)
2 smart00770 Zn_dep_PLPC Zinc de 96.2 0.024 5.2E-07 50.2 8.3 113 22-151 38-154 (241)
3 KOG3189 Phosphomannomutase [Li 45.4 10 0.00022 33.1 1.0 40 126-175 190-236 (252)
4 TIGR02052 MerP mercuric transp 35.8 26 0.00057 24.1 1.8 20 1-20 1-20 (92)
5 PF00882 Zn_dep_PLPC: Zinc dep 28.1 72 0.0016 25.1 3.4 48 127-183 79-126 (163)
6 COG0158 Fbp Fructose-1,6-bisph 26.4 33 0.00072 31.6 1.2 41 105-151 210-250 (326)
7 KOG3688 Cyclic GMP phosphodies 25.5 1.6E+02 0.0034 28.8 5.5 53 106-185 337-389 (554)
8 PRK11546 zraP zinc resistance 22.8 35 0.00076 27.9 0.6 20 29-48 38-57 (143)
9 PF13956 Ibs_toxin: Toxin Ibs, 20.4 63 0.0014 17.1 1.0 13 1-13 2-14 (19)
10 PF11777 DUF3316: Protein of u 20.3 59 0.0013 25.1 1.4 18 1-18 1-19 (114)
11 PF13801 Metal_resist: Heavy-m 20.1 94 0.002 22.9 2.4 23 26-48 33-55 (125)
No 1
>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3.1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.
Probab=100.00 E-value=2.4e-54 Score=380.61 Aligned_cols=203 Identities=38% Similarity=0.747 Sum_probs=154.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCChhccccccccccc---cCCccccccccccCC--CCCCccccCCc
Q 026002 19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF---HMRWSSPLHYVDTPD--FMCNYKYCRDC 93 (245)
Q Consensus 19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~a~WaD~ir~---~~~~~~~wHyid~p~--~~~~~~~~~dc 93 (245)
||..|||+||+||+++|+|+++++|++||+.....+|+++|+|||+||. +++++++|||+|+|. ..+++...++|
T Consensus 1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~ 80 (252)
T PF02265_consen 1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC 80 (252)
T ss_dssp --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence 9999999999999999999999999999986555899999999999994 579999999999998 44566666778
Q ss_pred cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcc-cccCCCCCCceEEEeeCCcccch
Q 026002 94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLH-VGFIGDKGGNTITVRWYRRKTNL 172 (245)
Q Consensus 94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH-~~~~~D~GGN~i~V~~~g~~~nL 172 (245)
++++|++++|.+++++|++.+.+ ..++.++||||+||||||||||| +++++|+|||+++|.++|+++||
T Consensus 81 -----~~~~~~~~ai~~~~~~L~~~~~~-----~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL 150 (252)
T PF02265_consen 81 -----PNGGCVVSAIKNYTSRLKDTSTS-----KAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL 150 (252)
T ss_dssp ------TT--HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred -----CCCCcHHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence 78999999999999999999877 46899999999999999999999 67899999999999999999999
Q ss_pred hHhhhhhhHhHHhhhcCcchHHHHHHHHHHhhhcccCCCccchhhccCCCccchhhhhhhcCCCceeee
Q 026002 173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCV 241 (245)
Q Consensus 173 H~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~W~~~~~~~~~c~~~~a~es~~~~~~~~ 241 (245)
|++||++|++......+..+...+++.|.++++. .....|.. . |+..|+.||.. |+|.+
T Consensus 151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~~---~~~~~~~~-----~-~~~~Wa~ES~~-la~~~ 209 (252)
T PF02265_consen 151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKITK---ESFKSWQP-----G-DPEDWANESHE-LACNI 209 (252)
T ss_dssp HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHHH-------HHHH-----H-HHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHhhccc---hhhhhhhh-----h-hHHHHHHHHHH-HHHHH
Confidence 9999999999887655566778888998888874 67777763 1 69999999966 88764
No 2
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=96.24 E-value=0.024 Score=50.18 Aligned_cols=113 Identities=20% Similarity=0.156 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCHH----HHHHHHHhCCCCCCCChhccccccccccccCCccccccccccCCCCCCccccCCccccC
Q 026002 22 EGHFAICKIAEGYLTED----ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSV 97 (245)
Q Consensus 22 ~GH~~Va~IA~~~L~~~----a~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc~~~~ 97 (245)
.-|.-|..=|...|... ....| ++|... -..|..-..|||.-...+.- ...||.|...+ .+|-+.
T Consensus 38 ~tH~~I~~qAi~iL~nd~~~~~~~~~-~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~~------- 106 (241)
T smart00770 38 NTHLFIVNQALEILKNDNNKNEYKLV-EILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLPG------- 106 (241)
T ss_pred cHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHH-HHHHHcCCcccccCcccccc-ccccccCCCCC-CCCCCC-------
Confidence 67999999999988654 22211 233211 23577778999986643332 26799886443 232111
Q ss_pred CCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026002 98 GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG 151 (245)
Q Consensus 98 ~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~ 151 (245)
.....+....+...-.+.-.... ...--+.|-.-.|+++|+-||+|+.
T Consensus 107 ---~~~A~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~ 154 (241)
T smart00770 107 ---FSNAKDTGRKYFKLALNEWKKGN---YKKAFFYLGRACHYLGDLSTPYHAN 154 (241)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCccccc
Confidence 11233444444443332211110 1122355677899999999999996
No 3
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=45.38 E-value=10 Score=33.08 Aligned_cols=40 Identities=33% Similarity=0.417 Sum_probs=27.5
Q ss_pred hhhcHHHHHHHH-------HHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhHh
Q 026002 126 EKYNLTEALMFL-------SHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHV 175 (245)
Q Consensus 126 ~~~~~~~aLk~L-------vHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~v 175 (245)
.-|++.++|+.| |||+||.-. -|||++.+.- ...+-=|+|
T Consensus 190 ~GWDKtyCLqhle~dgf~~IhFFGDkT~---------~GGNDyEIf~-dprtiGhsV 236 (252)
T KOG3189|consen 190 KGWDKTYCLQHLEKDGFDTIHFFGDKTM---------PGGNDYEIFA-DPRTIGHSV 236 (252)
T ss_pred CCcchhHHHHHhhhcCCceEEEeccccC---------CCCCcceeee-CCccccccc
Confidence 578999999876 577777655 4999999853 333333443
No 4
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=35.80 E-value=26 Score=24.10 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHhhccCCCC
Q 026002 1 MWIWRALILLQLVNGVLGWG 20 (245)
Q Consensus 1 m~~~~~l~~~~~~~~a~AWg 20 (245)
||+++-|++++++.+-.+|-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 88888888887766655554
No 5
>PF00882 Zn_dep_PLPC: Zinc dependent phospholipase C; InterPro: IPR001531 Bacillus cereus contains a monomeric phospholipase C 3.1.4.3 from EC (PLC) of 245 amino-acid residues that binds three zinc ions []. Although PLC prefers to act on phosphatidylcholine, it also shows weak catalytic activity with sphingomyelin and phosphatidylinositol []. Sequence studies have shown the PLC protein to be similar to the following: Alpha toxin from Clostridium perfringens and Clostridium bifermentans, which are zinc-dependent phospholipases C involved in haemolysis and cell rupture []. Lecithinase C from Listeria monocytogenes, which aids cell-to-cell spread by breaking down the 2-membrane vacuoles that surround the bacterium during transfer []. Each of these proteins is a zinc-dependent enzyme, binding 3 zinc ions per molecule []. The enzymes catalyse the conversion of phosphatidylcholine and water to 1,2-diacylglycerol and choline phosphate [, , ]. In B. cereus, there are nine residues known to be involved in binding the zinc ions: 5 His, 2 Asp, 1 Glu and 1 Trp. These residues are all conserved in the Clostridium alpha-toxin [].; GO: 0004629 phospholipase C activity, 0008270 zinc ion binding; PDB: 2WXU_A 1QMD_A 2WY6_C 1QM6_B 2WXT_A 1KHO_B 1P6E_A 2HUC_A 1P5X_A 2FFZ_A ....
Probab=28.12 E-value=72 Score=25.08 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=31.6
Q ss_pred hhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhHhhhhhhHhH
Q 026002 127 KYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDS 183 (245)
Q Consensus 127 ~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~vWDs~ii~~ 183 (245)
....++.|-++.|++.|.-. |..+.. . ....+....-|...|+.+...
T Consensus 79 ~~~~a~~lG~~~H~~~D~~~--H~~~~~---~----~~~~~~~~~~H~~~E~~ld~~ 126 (163)
T PF00882_consen 79 SKEAAFLLGYLCHYIADSFC--HPVPAN---H----NKIFSGNLLQHRYYETYLDSY 126 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--H---HT---T----TTTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--hccccc---c----ccccccchHHHHHHHHHHHHH
Confidence 35788999999999999999 810000 0 002234567788888887644
No 6
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=26.43 E-value=33 Score=31.61 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026002 105 TGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG 151 (245)
Q Consensus 105 ~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~ 151 (245)
..+++.|++.+....... .|.+.+||+.-+|+|+|+=|=-|
T Consensus 210 ~~~v~~yI~~~~~~~~~~------~r~y~~RyigSmVADvHRiL~~G 250 (326)
T COG0158 210 EEGVKKYIKDCFAEDKGT------RRPYNMRYIGSMVADVHRILLKG 250 (326)
T ss_pred cHHHHHHHHHHhccCCCc------CCCcchhhHHHHHHHHHHHHHcC
Confidence 478999999888775532 28899999999999999987544
No 7
>KOG3688 consensus Cyclic GMP phosphodiesterase [Signal transduction mechanisms]
Probab=25.51 E-value=1.6e+02 Score=28.76 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=40.0
Q ss_pred HHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhHhhhhhhHhHHh
Q 026002 106 GAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSAL 185 (245)
Q Consensus 106 ~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~vWDs~ii~~~~ 185 (245)
..|+.+++.|.-... -++..+|+.|+| ..||-.|- +.=+||.-|--.+++...
T Consensus 337 qqiktmk~~L~~~e~-------iDk~k~lsLllh-~aDIshPa-------------------K~w~lH~rWT~~llEEFf 389 (554)
T KOG3688|consen 337 QQIKTMKERLQQPEG-------IDKLKALSLLLH-AADISHPA-------------------KPWGLHHRWTMALLEEFF 389 (554)
T ss_pred HHHHHHHHHhhChhh-------hhhHHHHHHHHH-HhccCCCc-------------------ccccHHHHHHHHHHHHHH
Confidence 466777777766543 378999999999 57888774 345799999999997664
No 8
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.80 E-value=35 Score=27.88 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.7
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 026002 29 KIAEGYLTEDALAAVKELLP 48 (245)
Q Consensus 29 ~IA~~~L~~~a~~~v~~lL~ 48 (245)
.=.+..|||+.++.+++|..
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~ 57 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHN 57 (143)
T ss_pred ccccccCCHHHHHHHHHHHH
Confidence 44566799999999999986
No 9
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=20.39 E-value=63 Score=17.10 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=6.0
Q ss_pred ChHHHHHHHHHHh
Q 026002 1 MWIWRALILLQLV 13 (245)
Q Consensus 1 m~~~~~l~~~~~~ 13 (245)
||..++|+++++.
T Consensus 2 Mk~vIIlvvLLli 14 (19)
T PF13956_consen 2 MKLVIILVVLLLI 14 (19)
T ss_pred ceehHHHHHHHhc
Confidence 5544444444433
No 10
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.35 E-value=59 Score=25.10 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=11.5
Q ss_pred ChHHHHHHHHH-HhhccCC
Q 026002 1 MWIWRALILLQ-LVNGVLG 18 (245)
Q Consensus 1 m~~~~~l~~~~-~~~~a~A 18 (245)
||++++|++++ ++..++|
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 88777766444 4555666
No 11
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=20.06 E-value=94 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Q 026002 26 AICKIAEGYLTEDALAAVKELLP 48 (245)
Q Consensus 26 ~Va~IA~~~L~~~a~~~v~~lL~ 48 (245)
.........||++.++.|+.++.
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~ 55 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMD 55 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHH
Confidence 66667778999999999999985
Done!