Your job contains 1 sequence.
>026003
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG
RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD
LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP
LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL
IDSYV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026003
(245 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2078921 - symbol:eIF6A "AT3G55620" species:370... 1152 6.2e-117 1
MGI|MGI:1196288 - symbol:Eif6 "eukaryotic translation ini... 957 2.9e-96 1
UNIPROTKB|P56537 - symbol:EIF6 "Eukaryotic translation in... 955 4.7e-96 1
RGD|1305373 - symbol:Eif6 "eukaryotic translation initiat... 953 7.6e-96 1
UNIPROTKB|Q9TU47 - symbol:EIF6 "Eukaryotic translation in... 948 2.6e-95 1
UNIPROTKB|E2R1S5 - symbol:EIF6 "Eukaryotic translation in... 940 1.8e-94 1
UNIPROTKB|F1NGL6 - symbol:EIF6 "Eukaryotic translation in... 935 6.1e-94 1
CGD|CAL0001603 - symbol:orf19.1815 species:5476 "Candida ... 929 2.7e-93 1
SGD|S000006220 - symbol:TIF6 "Constituent of 66S pre-ribo... 925 7.0e-93 1
ZFIN|ZDB-GENE-031118-110 - symbol:eif6 "eukaryotic transl... 923 1.1e-92 1
POMBASE|SPCC1919.09 - symbol:tif6 "translation initiation... 919 3.0e-92 1
FB|FBgn0034915 - symbol:eIF6 "eIF6" species:7227 "Drosoph... 900 3.1e-90 1
TAIR|locus:2063927 - symbol:eIF6B "AT2G39820" species:370... 896 8.3e-90 1
DICTYBASE|DDB_G0276493 - symbol:eIF6 "eukaryotic translat... 885 1.2e-88 1
UNIPROTKB|G4MUS0 - symbol:TIF6 "Eukaryotic translation in... 873 2.3e-87 1
ASPGD|ASPL0000076897 - symbol:AN8824 species:162425 "Emer... 871 3.7e-87 1
UNIPROTKB|I3L8I5 - symbol:EIF6 "Uncharacterized protein" ... 819 1.2e-81 1
WB|WBGene00001234 - symbol:eif-6 species:6239 "Caenorhabd... 774 7.1e-77 1
UNIPROTKB|B7ZBG9 - symbol:EIF6 "Eukaryotic translation in... 482 4.2e-59 2
UNIPROTKB|B7ZBH1 - symbol:EIF6 "Eukaryotic translation in... 412 1.6e-38 1
UNIPROTKB|F8WD20 - symbol:EIF6 "Eukaryotic translation in... 142 1.0e-09 1
UNIPROTKB|F8WDS6 - symbol:EIF6 "Eukaryotic translation in... 142 1.0e-09 1
>TAIR|locus:2078921 [details] [associations]
symbol:eIF6A "AT3G55620" species:3702 "Arabidopsis
thaliana" [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0006413 "translational initiation" evidence=ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP;NAS] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0071215
"cellular response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654
HAMAP:MF_00032 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0009793 GO:GO:0043022
GO:GO:0003743 GO:GO:0071215 GO:GO:0042256 EMBL:AL161667
eggNOG:COG1976 HOGENOM:HOG000230605 KO:K03264
ProtClustDB:CLSN2683375 PANTHER:PTHR10784 TIGRFAMs:TIGR00323
EMBL:AY128351 EMBL:BT009656 IPI:IPI00521801 PIR:T47701
RefSeq:NP_191121.1 UniGene:At.23205 HSSP:Q12522
ProteinModelPortal:Q9M060 SMR:Q9M060 STRING:Q9M060 PaxDb:Q9M060
PRIDE:Q9M060 EnsemblPlants:AT3G55620.1 GeneID:824728
KEGG:ath:AT3G55620 TAIR:At3g55620 InParanoid:Q9M060 OMA:QFENSNE
PhylomeDB:Q9M060 Genevestigator:Q9M060 Uniprot:Q9M060
Length = 245
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 218/245 (88%), Positives = 239/245 (97%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct: 1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTD
Sbjct: 61 RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LD+ETEEIIADVLGVEVFRQTIAGNILVGSYC+ SN+GG+VHPHTS+EDL+ELSTLLQVP
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVI AG+TVNDWT+FCGSDTTATELSVI+S+FKLREAQP++IVDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSL 240
Query: 241 IDSYV 245
ID+YV
Sbjct: 241 IDTYV 245
>MGI|MGI:1196288 [details] [associations]
symbol:Eif6 "eukaryotic translation initiation factor 6"
species:10090 "Mus musculus" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005638 "lamin filament" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005882 "intermediate filament" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0007229 "integrin-mediated signaling
pathway" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0042256 "mature ribosome assembly" evidence=ISO]
[GO:0043022 "ribosome binding" evidence=ISO] InterPro:IPR002769
Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654 HAMAP:MF_00032
MGI:MGI:1196288 GO:GO:0005737 GO:GO:0005730 GO:GO:0043022
GO:GO:0003743 GO:GO:0042256 eggNOG:COG1976 HOGENOM:HOG000230605
KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323 OMA:QFENSNE CTD:3692
HOVERGEN:HBG001300 OrthoDB:EOG4STS5C GO:GO:0005638 EMBL:AF047046
EMBL:BC015274 EMBL:BC024442 EMBL:Y11460 IPI:IPI00115862
RefSeq:NP_034709.1 UniGene:Mm.271674 ProteinModelPortal:O55135
SMR:O55135 IntAct:O55135 STRING:O55135 PhosphoSite:O55135
PaxDb:O55135 PRIDE:O55135 Ensembl:ENSMUST00000029142 GeneID:16418
KEGG:mmu:16418 InParanoid:O55135 NextBio:289617 Bgee:O55135
CleanEx:MM_EIF6 Genevestigator:O55135 GermOnline:ENSMUSG00000027613
Uniprot:O55135
Length = 245
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 183/243 (75%), Positives = 208/243 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV SI G RIIG
Sbjct: 1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN CND+VAL H D
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LDRETEEI+ADVL VEVFRQT+A +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EA+P+ I MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240
Query: 241 IDS 243
IDS
Sbjct: 241 IDS 243
>UNIPROTKB|P56537 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9606 "Homo sapiens" [GO:0000054 "ribosomal subunit export
from nucleus" evidence=IEA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0042273 "ribosomal large subunit
biogenesis" evidence=IEA] [GO:0043023 "ribosomal large subunit
binding" evidence=IEA] [GO:0005638 "lamin filament" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0042256 "mature ribosome assembly"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413
SMART:SM00654 HAMAP:MF_00032 GO:GO:0005634 GO:GO:0005737
EMBL:CH471077 GO:GO:0043022 GO:GO:0003743 GO:GO:0042256
CleanEx:HS_EIF3A eggNOG:COG1976 HOGENOM:HOG000230605 KO:K03264
PANTHER:PTHR10784 TIGRFAMs:TIGR00323 OMA:QFENSNE CTD:3692
HOVERGEN:HBG001300 OrthoDB:EOG4STS5C GO:GO:0005638 EMBL:AF022229
EMBL:Y11435 EMBL:AF289541 EMBL:AF289540 EMBL:AF047433 EMBL:AK314969
EMBL:AB062289 EMBL:CR456764 EMBL:AL121753 EMBL:BC001119
EMBL:BC011845 EMBL:BC019305 IPI:IPI00010105 RefSeq:NP_001254739.1
RefSeq:NP_002203.1 RefSeq:NP_852131.1 RefSeq:NP_852133.1
UniGene:Hs.654848 ProteinModelPortal:P56537 SMR:P56537
IntAct:P56537 STRING:P56537 Allergome:8361 PhosphoSite:P56537
DMDM:3122258 OGP:P56537 REPRODUCTION-2DPAGE:IPI00010105
SWISS-2DPAGE:P56537 PaxDb:P56537 PeptideAtlas:P56537 PRIDE:P56537
DNASU:3692 Ensembl:ENST00000374436 Ensembl:ENST00000374450
GeneID:3692 KEGG:hsa:3692 UCSC:uc002xbv.1 GeneCards:GC20M033870
HGNC:HGNC:6159 HPA:HPA040873 MIM:602912 neXtProt:NX_P56537
PharmGKB:PA29958 InParanoid:P56537 PhylomeDB:P56537 ChiTaRS:EIF6
GenomeRNAi:3692 NextBio:14465 ArrayExpress:P56537 Bgee:P56537
CleanEx:HS_EIF6 Genevestigator:P56537 GermOnline:ENSG00000126005
Uniprot:P56537
Length = 245
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 182/243 (74%), Positives = 207/243 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV SI G RIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN CND+VAL H D
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LDRETEEI+ADVL VEVFRQT+A +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 241 IDS 243
IDS
Sbjct: 241 IDS 243
>RGD|1305373 [details] [associations]
symbol:Eif6 "eukaryotic translation initiation factor 6"
species:10116 "Rattus norvegicus" [GO:0000054 "ribosomal subunit
export from nucleus" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005638 "lamin
filament" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=IEA] [GO:0042273 "ribosomal large subunit
biogenesis" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413
SMART:SM00654 HAMAP:MF_00032 RGD:1305373 GO:GO:0005737
GO:GO:0005730 GO:GO:0043022 EMBL:CH474050 GO:GO:0003743
GO:GO:0042256 KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323
CTD:3692 HOVERGEN:HBG001300 EMBL:BC105764 IPI:IPI00364976
RefSeq:NP_001032429.1 UniGene:Rn.190833 ProteinModelPortal:Q3KRD8
SMR:Q3KRD8 PRIDE:Q3KRD8 GeneID:305506 KEGG:rno:305506
NextBio:654737 Genevestigator:Q3KRD8 Uniprot:Q3KRD8
Length = 245
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 182/243 (74%), Positives = 207/243 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FEN+CEVG F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV SI G RIIG
Sbjct: 1 MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN CND+VAL H D
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LDRETEEI+ADVL VEVFRQT+A +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EA+P+ I MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240
Query: 241 IDS 243
IDS
Sbjct: 241 IDS 243
>UNIPROTKB|Q9TU47 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005638 "lamin filament"
evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0042256 "mature ribosome assembly" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA]
[GO:0043022 "ribosome binding" evidence=IEA] InterPro:IPR002769
Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654 HAMAP:MF_00032
GO:GO:0005737 GO:GO:0005730 GO:GO:0043022 GO:GO:0003743
GO:GO:0042256 eggNOG:COG1976 HOGENOM:HOG000230605 KO:K03264
PANTHER:PTHR10784 TIGRFAMs:TIGR00323 HSSP:Q12522 OMA:QFENSNE
EMBL:AF141872 EMBL:BC109922 IPI:IPI00699022 PIR:JC7273
RefSeq:NP_777255.1 UniGene:Bt.4426 ProteinModelPortal:Q9TU47
SMR:Q9TU47 STRING:Q9TU47 PRIDE:Q9TU47 Ensembl:ENSBTAT00000014966
GeneID:286811 KEGG:bta:286811 CTD:3692 GeneTree:ENSGT00390000015972
HOVERGEN:HBG001300 InParanoid:Q9TU47 OrthoDB:EOG4STS5C
NextBio:20806465 GO:GO:0005638 Uniprot:Q9TU47
Length = 245
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 181/243 (74%), Positives = 206/243 (84%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FEN+CE+G F+KLTN++CLVAIGGSE+FYS FE ELA IPVV SI G RIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN CND+VAL H D
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LDRETEEI+ADVL VEVFRQT+A +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 241 IDS 243
IDS
Sbjct: 241 IDS 243
>UNIPROTKB|E2R1S5 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9615 "Canis lupus familiaris" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005638
"lamin filament" evidence=IEA] [GO:0043023 "ribosomal large subunit
binding" evidence=IEA] [GO:0042273 "ribosomal large subunit
biogenesis" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0000054 "ribosomal subunit export from nucleus"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654
HAMAP:MF_00032 GO:GO:0005737 GO:GO:0005730 GO:GO:0043022
GO:GO:0042273 GO:GO:0003743 GO:GO:0042256 GO:GO:0043023
GO:GO:0000054 PANTHER:PTHR10784 TIGRFAMs:TIGR00323 OMA:QFENSNE
GeneTree:ENSGT00390000015972 GO:GO:0005638 EMBL:AAEX03013911
ProteinModelPortal:E2R1S5 Ensembl:ENSCAFT00000012778
NextBio:20852730 Uniprot:E2R1S5
Length = 242
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 180/242 (74%), Positives = 204/242 (84%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE ELAD IPVV SI G RIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN CND+VAL H D
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LDRETEEI+ADVL VEVFRQT+A +LVGSY FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 241 ID 242
ID
Sbjct: 241 ID 242
>UNIPROTKB|F1NGL6 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9031 "Gallus gallus" [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0042256 "mature ribosome assembly" evidence=IEA]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005638 "lamin filament" evidence=IEA]
InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654
HAMAP:MF_00032 GO:GO:0005737 GO:GO:0005730 GO:GO:0043022
GO:GO:0042273 GO:GO:0003743 GO:GO:0042256 GO:GO:0043023
PANTHER:PTHR10784 TIGRFAMs:TIGR00323 OMA:QFENSNE
GeneTree:ENSGT00390000015972 GO:GO:0005638 EMBL:AADN02019500
IPI:IPI00576279 Ensembl:ENSGALT00000002799 Uniprot:F1NGL6
Length = 242
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 181/242 (74%), Positives = 204/242 (84%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FEN+ E G F+KLTNA+CLVAIGGSE+FYS FE EL IPVV SI G RIIG
Sbjct: 1 MAVRASFENNNEQGCFAKLTNAYCLVAIGGSENFYSVFEGELFGTIPVVHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+CVGN++GLL+P +TTDQELQH+RNSLPD V +QR+EERLSALGN CND+VAL H D
Sbjct: 61 RMCVGNRHGLLVPSSTTDQELQHIRNSLPDSVRIQRVEERLSALGNVTTCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LDRETEEI+ADVL VEVFRQT+A +LVGSYC FSN+GG+VHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGIVHPKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVIGAG+ VNDW AFCG DTT+TELSVIES+FKL EAQP+ I MR SL
Sbjct: 181 LVAGTVNRGSEVIGAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSL 240
Query: 241 ID 242
ID
Sbjct: 241 ID 242
>CGD|CAL0001603 [details] [associations]
symbol:orf19.1815 species:5476 "Candida albicans" [GO:0043023
"ribosomal large subunit binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654
CGD:CAL0001603 HAMAP:MF_00032 GO:GO:0005737 GO:GO:0005730
GO:GO:0043022 GO:GO:0003743 GO:GO:0042256 eggNOG:COG1976
HOGENOM:HOG000230605 KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323
EMBL:AACQ01000270 EMBL:AACQ01000269 RefSeq:XP_710430.1
RefSeq:XP_710434.1 ProteinModelPortal:Q59L13 SMR:Q59L13
STRING:Q59L13 GeneID:3647964 GeneID:3647968 KEGG:cal:CaO19.1815
KEGG:cal:CaO19.9378 Uniprot:Q59L13
Length = 245
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 175/244 (71%), Positives = 209/244 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MATR FENS EVGVFS LTN++CLVA+GGSE+FYS FEAEL DVIP+V T+I G RI+G
Sbjct: 1 MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+ GN+ GLL+P TTDQEL HLRNSLPD + +QR+EERLSALGN I CND+VAL H D
Sbjct: 61 RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
++RETEE+IADVLGVEVFRQTIAGN+LVGSYCS SN+GGLVHP TSI+D +ELS+LLQVP
Sbjct: 121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTSIQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGS V+GAG+ VNDW + G DTTA ELSVIES+F+L++AQP+AI +R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDWLSVAGLDTTAPELSVIESIFRLQDAQPDAIGGNLRDTL 240
Query: 241 IDSY 244
I++Y
Sbjct: 241 IETY 244
>SGD|S000006220 [details] [associations]
symbol:TIF6 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0043023 "ribosomal
large subunit binding" evidence=IEA;IDA] [GO:0043022 "ribosome
binding" evidence=IEA] [GO:0042273 "ribosomal large subunit
biogenesis" evidence=IEA;IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IDA] [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000466
"maturation of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0000054 "ribosomal subunit export
from nucleus" evidence=IEA;IGI] [GO:0006364 "rRNA processing"
evidence=IGI] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0042256 "mature ribosome assembly" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002769 Pfam:PF01912
PIRSF:PIRSF006413 SMART:SM00654 SGD:S000006220 HAMAP:MF_00032
GO:GO:0005737 GO:GO:0005730 GO:GO:0043022 EMBL:Z71255 EMBL:U31900
EMBL:BK006949 GO:GO:0030687 GO:GO:0003743 EMBL:Z49919 GO:GO:0000463
GO:GO:0042256 GO:GO:0000466 GO:GO:0043023 GO:GO:0000054
eggNOG:COG1976 HOGENOM:HOG000230605 KO:K03264 PANTHER:PTHR10784
TIGRFAMs:TIGR00323 OMA:QFENSNE GeneTree:ENSGT00390000015972
OrthoDB:EOG4M951G EMBL:AY692916 PIR:S57550 RefSeq:NP_015341.1
PDB:1G62 PDB:2X7N PDB:3J2I PDBsum:1G62 PDBsum:2X7N PDBsum:3J2I
ProteinModelPortal:Q12522 SMR:Q12522 DIP:DIP-5395N IntAct:Q12522
MINT:MINT-527536 STRING:Q12522 PaxDb:Q12522 PeptideAtlas:Q12522
EnsemblFungi:YPR016C GeneID:856126 KEGG:sce:YPR016C CYGD:YPR016c
EvolutionaryTrace:Q12522 NextBio:981212 Genevestigator:Q12522
GermOnline:YPR016C Uniprot:Q12522
Length = 245
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 175/244 (71%), Positives = 208/244 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MATR FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+ GN+ GLL+P TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61 RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
+DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVP
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGS V+GAG+ VND+ A G DTTA ELSVIES+F+L++AQP +I +R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240
Query: 241 IDSY 244
I++Y
Sbjct: 241 IETY 244
>ZFIN|ZDB-GENE-031118-110 [details] [associations]
symbol:eif6 "eukaryotic translation initiation
factor 6" species:7955 "Danio rerio" [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0042256 "mature ribosome assembly" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0043023 "ribosomal large subunit
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA]
InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654
HAMAP:MF_00032 ZFIN:ZDB-GENE-031118-110 GO:GO:0005737 GO:GO:0005730
GO:GO:0043022 GO:GO:0003743 GO:GO:0042256 eggNOG:COG1976
HOGENOM:HOG000230605 KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323
OMA:QFENSNE CTD:3692 GeneTree:ENSGT00390000015972
HOVERGEN:HBG001300 EMBL:AY398366 EMBL:AL929108 EMBL:BC071374
EMBL:BC049488 IPI:IPI00509697 RefSeq:NP_957238.1 UniGene:Dr.76244
ProteinModelPortal:Q6ZM19 SMR:Q6ZM19 STRING:Q6ZM19 PRIDE:Q6ZM19
Ensembl:ENSDART00000016890 GeneID:386850 KEGG:dre:386850
InParanoid:Q7ZWC1 NextBio:20814044 ArrayExpress:Q6ZM19 Bgee:Q6ZM19
Uniprot:Q6ZM19
Length = 245
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 177/243 (72%), Positives = 205/243 (84%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FE + E+G F+KLTN +CLVAIGGSE+FYS FE EL++ +PV+ SI G RIIG
Sbjct: 1 MAVRASFEKNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETMPVIHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
R+CVGN++GLL+P+ TTDQELQH+RN LPD V +QR+EERLSALGN IACND+VAL H D
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LDRETEEI+AD L VEVFRQT+A +LVGSYC+FSN+GGLVH TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADTLKVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSVIESVF+L E QP+AI MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSL 240
Query: 241 IDS 243
IDS
Sbjct: 241 IDS 243
>POMBASE|SPCC1919.09 [details] [associations]
symbol:tif6 "translation initiation factor eIF6"
species:4896 "Schizosaccharomyces pombe" [GO:0000054 "ribosomal
subunit export from nucleus" evidence=IEA] [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IEA]
InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654
PomBase:SPCC1919.09 HAMAP:MF_00032 GO:GO:0005829 GO:GO:0005634
GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0043022
GO:GO:0003743 GO:GO:0042256 GO:GO:0002183 eggNOG:COG1976
HOGENOM:HOG000230605 KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323
OMA:QFENSNE OrthoDB:EOG4M951G PIR:T41234 RefSeq:NP_588491.1
ProteinModelPortal:O94476 SMR:O94476 STRING:O94476
EnsemblFungi:SPCC1919.09.1 GeneID:2539126 KEGG:spo:SPCC1919.09
NextBio:20800298 Uniprot:O94476
Length = 244
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 174/244 (71%), Positives = 209/244 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FENS E+GVFS LTN++ LVA+GGSE+FYS FEAEL DV+PVV T+IGG RIIG
Sbjct: 1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
RL GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D
Sbjct: 61 RLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
++RETEEIIADVL VEVFRQT+AGN+L GSYC+ SN+G LVHP TSI++ DELS+LLQVP
Sbjct: 121 IERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGT+NRGS+VIGAGL VNDW AF G DTTATEL+V ES+FKL++AQP+AI+ R +L
Sbjct: 181 LVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTL 239
Query: 241 IDSY 244
++SY
Sbjct: 240 VESY 243
>FB|FBgn0034915 [details] [associations]
symbol:eIF6 "eIF6" species:7227 "Drosophila melanogaster"
[GO:0005829 "cytosol" evidence=ISS;NAS] [GO:0006412 "translation"
evidence=NAS] [GO:0006413 "translational initiation" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0043022 "ribosome binding" evidence=IEA] [GO:0042256 "mature
ribosome assembly" evidence=IEA] InterPro:IPR002769 Pfam:PF01912
PIRSF:PIRSF006413 SMART:SM00654 HAMAP:MF_00032 EMBL:AE013599
GO:GO:0005829 GO:GO:0005730 GO:GO:0043022 GO:GO:0003743
GO:GO:0042256 eggNOG:COG1976 KO:K03264 PANTHER:PTHR10784
TIGRFAMs:TIGR00323 OMA:QFENSNE CTD:3692
GeneTree:ENSGT00390000015972 EMBL:X97641 EMBL:AY094688
RefSeq:NP_659573.1 UniGene:Dm.33632 ProteinModelPortal:P56538
SMR:P56538 STRING:P56538 PaxDb:P56538 PRIDE:P56538
EnsemblMetazoa:FBtr0072235 GeneID:37776 KEGG:dme:Dmel_CG17611
UCSC:CG17611-RA FlyBase:FBgn0034915 InParanoid:P56538
OrthoDB:EOG46WWRC PhylomeDB:P56538 GenomeRNAi:37776 NextBio:805352
Bgee:P56538 GermOnline:CG17611 Uniprot:P56538
Length = 245
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 173/242 (71%), Positives = 206/242 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV ++GG RIIG
Sbjct: 1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
RL VGN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H D
Sbjct: 61 RLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
LD+ETEEIIADVL VEVFRQTIA N LVGSY SN+GG+VHP TSI+D DELS+LLQVP
Sbjct: 121 LDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRGSEV+ AG+ VNDW +F G +TTATE+SVIESVFKL +AQP + ++R +L
Sbjct: 181 LVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAAL 240
Query: 241 ID 242
I+
Sbjct: 241 IE 242
>TAIR|locus:2063927 [details] [associations]
symbol:eIF6B "AT2G39820" species:3702 "Arabidopsis
thaliana" [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0006413 "translational initiation" evidence=ISS]
[GO:0042256 "mature ribosome assembly" evidence=IEA] [GO:0043022
"ribosome binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654
HAMAP:MF_00032 GO:GO:0005829 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0043022 GO:GO:0003743
EMBL:AC003000 GO:GO:0042256 EMBL:BX821100 IPI:IPI00534073
PIR:T01012 RefSeq:NP_181512.1 UniGene:At.50125
ProteinModelPortal:O22290 SMR:O22290 STRING:O22290 PaxDb:O22290
PRIDE:O22290 EnsemblPlants:AT2G39820.1 GeneID:818569
KEGG:ath:AT2G39820 TAIR:At2g39820 eggNOG:COG1976
HOGENOM:HOG000230605 InParanoid:O22290 KO:K03264 OMA:RIEEPIC
PhylomeDB:O22290 ProtClustDB:CLSN2683375 Genevestigator:O22290
GermOnline:AT2G39820 PANTHER:PTHR10784 TIGRFAMs:TIGR00323
Uniprot:O22290
Length = 247
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 172/247 (69%), Positives = 211/247 (85%)
Query: 1 MATRLMFENS-CEVGVFSKLTNAFCLV-AIGGSESFYSTFEAELADVIPVVKTSIGGNRI 58
MATRL ++N+ CE+GVFSKLTNA+CLV A S +F++ +E++L VIP+V TSIGG+
Sbjct: 1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGT 60
Query: 59 IGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAH 118
IG LCVGNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H
Sbjct: 61 IGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVH 120
Query: 119 TDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQ 178
L+++TEEII+DVLGVEV+RQTIA N LVGSYCS SN GG+VH +T++E++ EL+ L+Q
Sbjct: 121 PKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQ 180
Query: 179 VPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRK 238
VPLVAGTVNRGS+VI AGLTVNDWTAFCGSDTTA ELSV+ ++FKL ++QP+ + EMRK
Sbjct: 181 VPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRK 240
Query: 239 SLIDSYV 245
SLID+YV
Sbjct: 241 SLIDTYV 247
>DICTYBASE|DDB_G0276493 [details] [associations]
symbol:eIF6 "eukaryotic translation initiation factor
6" species:44689 "Dictyostelium discoideum" [GO:0043023 "ribosomal
large subunit binding" evidence=IEA;ISS] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0043022 "ribosome
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002769 Pfam:PF01912
PIRSF:PIRSF006413 SMART:SM00654 dictyBase:DDB_G0276493
HAMAP:MF_00032 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0043022 GO:GO:0042273 GO:GO:0003743
EMBL:AAFI02000015 GO:GO:0042256 GO:GO:0043023 eggNOG:COG1976
KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323 HSSP:Q12522
OMA:QFENSNE RefSeq:XP_643108.1 ProteinModelPortal:Q551M2 SMR:Q551M2
STRING:Q551M2 EnsemblProtists:DDB0234038 GeneID:8620512
KEGG:ddi:DDB_G0276493 ProtClustDB:PTZ00136 Uniprot:Q551M2
Length = 244
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 169/243 (69%), Positives = 203/243 (83%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MATRL +ENSC+VGVF KLTN +CLV GS+ F T E LAD IPVV+TSI G RI+G
Sbjct: 1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
RL GNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D
Sbjct: 61 RLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
+DRETEEIIADVLGVEVFRQT++GN+LVG+YC+ +N+G LVHP TSI D DELS+LLQVP
Sbjct: 121 IDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240
LVAGTVNRG+E + AG VNDWTA G+DTTATE+SVIES+F L+ ++P+ I++ +R S+
Sbjct: 181 LVAGTVNRGNECVAAGCVVNDWTAIVGADTTATEISVIESIFALQGSKPSNIINNIRNSI 240
Query: 241 IDS 243
+D+
Sbjct: 241 VDN 243
>UNIPROTKB|G4MUS0 [details] [associations]
symbol:TIF6 "Eukaryotic translation initiation factor 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR002769 Pfam:PF01912
PIRSF:PIRSF006413 SMART:SM00654 HAMAP:MF_00032 GO:GO:0005737
GO:GO:0005730 GO:GO:0043022 GO:GO:0042273 GO:GO:0003743
GO:GO:0043581 EMBL:CM001232 GO:GO:0042256 GO:GO:0043023
GO:GO:0000054 KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323
RefSeq:XP_003714657.1 ProteinModelPortal:G4MUS0 SMR:G4MUS0
EnsemblFungi:MGG_01671T0 GeneID:2679613 KEGG:mgr:MGG_01671
Uniprot:G4MUS0
Length = 246
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 171/245 (69%), Positives = 203/245 (82%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FENS EVGVF+ LTN++ LVAIG S +FYS FEAEL DVIP+ +T+I G RI+G
Sbjct: 1 MAVRAQFENSNEVGVFATLTNSYSLVAIGASGNFYSVFEAELQDVIPICRTTIAGMRIVG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
RL GN+ GLL+P TTTDQELQHLRNSLPD+V +QRIEERLSALGN IA NDH+AL H D
Sbjct: 61 RLTAGNRKGLLVPTTTTDQELQHLRNSLPDEVKIQRIEERLSALGNVIATNDHIALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
L+RETEEIIADVLGVEVFRQT+A N+LVGSY S SN+GGLVHP TSI+D DELS+LLQVP
Sbjct: 121 LERETEEIIADVLGVEVFRQTVADNVLVGSYMSLSNQGGLVHPKTSIQDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQ-PNAIVDEMRKS 239
LVAG++NRGS V+GAG+ VNDW A G DTTATELSV+ESVF+L E P+ I M+ +
Sbjct: 181 LVAGSINRGSNVVGAGMVVNDWMAVTGLDTTATELSVVESVFRLGEGLGPSNINTNMKDT 240
Query: 240 LIDSY 244
+++S+
Sbjct: 241 MVESF 245
>ASPGD|ASPL0000076897 [details] [associations]
symbol:AN8824 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0042256 "mature ribosome assembly" evidence=IEA] [GO:0000466
"maturation of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000054
"ribosomal subunit export from nucleus" evidence=IEA] [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR002769
Pfam:PF01912 PIRSF:PIRSF006413 SMART:SM00654 HAMAP:MF_00032
GO:GO:0005737 GO:GO:0005730 GO:GO:0043022 GO:GO:0003743
EMBL:BN001303 GO:GO:0042256 eggNOG:COG1976 HOGENOM:HOG000230605
KO:K03264 PANTHER:PTHR10784 TIGRFAMs:TIGR00323 OMA:QFENSNE
EMBL:AACD01000162 RefSeq:XP_682093.1 ProteinModelPortal:Q5ASA6
SMR:Q5ASA6 STRING:Q5ASA6 EnsemblFungi:CADANIAT00006233
GeneID:2868426 KEGG:ani:AN8824.2 OrthoDB:EOG4M951G Uniprot:Q5ASA6
Length = 247
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 174/246 (70%), Positives = 199/246 (80%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FENS EVGVFS+LTN++ LVAIG SE+FYS FEAEL DVIP+ +I G RIIG
Sbjct: 1 MAVRAQFENSNEVGVFSRLTNSYALVAIGASENFYSVFEAELQDVIPICHATIAGTRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
RL GN+ GLL+P TTTDQELQHLRN+LPD V +QRIEERLSALGN I CNDHVAL H D
Sbjct: 61 RLTAGNRKGLLVPTTTTDQELQHLRNTLPDDVKIQRIEERLSALGNVICCNDHVALIHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
L+RETEEIIADVLGVEVFRQTIA N+L GSY + SN+GG+VHP TSI D DELS+LLQVP
Sbjct: 121 LERETEEIIADVLGVEVFRQTIADNVLTGSYMALSNQGGIVHPKTSIRDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEM--RK 238
LVAG+VNRGS V+GAGL VNDW A G DTTATELSVIESVF+L E P I + +
Sbjct: 181 LVAGSVNRGSPVVGAGLVVNDWLAVTGLDTTATELSVIESVFRLGENGPGGIGQGVANKD 240
Query: 239 SLIDSY 244
S+++S+
Sbjct: 241 SIVESF 246
>UNIPROTKB|I3L8I5 [details] [associations]
symbol:EIF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005638 "lamin filament" evidence=IEA] [GO:0043022
"ribosome binding" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=IEA] InterPro:IPR002769 Pfam:PF01912
PIRSF:PIRSF006413 SMART:SM00654 HAMAP:MF_00032 GO:GO:0043022
GO:GO:0042256 PANTHER:PTHR10784 TIGRFAMs:TIGR00323 OMA:QFENSNE
GeneTree:ENSGT00390000015972 GO:GO:0005638
Ensembl:ENSSSCT00000023513 Uniprot:I3L8I5
Length = 211
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 158/209 (75%), Positives = 177/209 (84%)
Query: 35 YSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVV 94
YS FE ELAD IPVV SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RN LPD V +
Sbjct: 1 YSVFEGELADTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQI 60
Query: 95 QRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 154
+R+EERLSALGN CND+VAL H DLDRETEEI+ADVL VEVFRQT+A +LVGSYC F
Sbjct: 61 RRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLRVEVFRQTVADQVLVGSYCVF 120
Query: 155 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 214
SN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+TE
Sbjct: 121 SNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTE 180
Query: 215 LSVIESVFKLREAQPNAIVDEMRKSLIDS 243
LSV+ESVFKL EAQP+ I MR SLIDS
Sbjct: 181 LSVVESVFKLNEAQPSTIATSMRDSLIDS 209
>WB|WBGene00001234 [details] [associations]
symbol:eif-6 species:6239 "Caenorhabditis elegans"
[GO:0042256 "mature ribosome assembly" evidence=IEA] [GO:0043022
"ribosome binding" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR002769 Pfam:PF01912 PIRSF:PIRSF006413
SMART:SM00654 HAMAP:MF_00032 GO:GO:0009792 GO:GO:0006898
GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0005730
GO:GO:0002119 GO:GO:0043022 GO:GO:0003743 GO:GO:0042256
eggNOG:COG1976 HOGENOM:HOG000230605 KO:K03264 PANTHER:PTHR10784
TIGRFAMs:TIGR00323 OMA:QFENSNE GeneTree:ENSGT00390000015972
EMBL:Z99709 PIR:T19988 RefSeq:NP_493272.1 ProteinModelPortal:O62106
SMR:O62106 IntAct:O62106 STRING:O62106 PaxDb:O62106
EnsemblMetazoa:C47B2.5.1 EnsemblMetazoa:C47B2.5.2 GeneID:173169
KEGG:cel:CELE_C47B2.5 UCSC:C47B2.5.1 CTD:173169 WormBase:C47B2.5
InParanoid:O62106 NextBio:878561 Uniprot:O62106
Length = 246
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 147/244 (60%), Positives = 193/244 (79%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R+ +E S +VGVF LTN++CLV +GG+++FYS EAEL+D+IPVV TSI RI+G
Sbjct: 1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
RL VGN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H +
Sbjct: 61 RLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAE 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
+ ETE+ + +VL VEVFR ++A N LVGSYC S+ G LV T E E++ LLQ+P
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIP 180
Query: 181 LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE-AQPNAIVDEMRKS 239
+VAGT NRGSE+IGAG+ VNDW AFCG D+T+TELSV+ES+FKL E P +I +++R +
Sbjct: 181 VVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDT 240
Query: 240 LIDS 243
LI+S
Sbjct: 241 LIES 244
>UNIPROTKB|B7ZBG9 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9606 "Homo sapiens" [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0000054 "ribosomal subunit export from nucleus"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] InterPro:IPR002769 Pfam:PF01912 SMART:SM00654
HAMAP:MF_00032 GO:GO:0005737 GO:GO:0005730 GO:GO:0043022
GO:GO:0042273 GO:GO:0003743 GO:GO:0042256 GO:GO:0043023
GO:GO:0000054 HOGENOM:HOG000230605 KO:K03264 PANTHER:PTHR10784
CTD:3692 HOVERGEN:HBG001300 EMBL:AL121753 RefSeq:NP_852131.1
UniGene:Hs.654848 DNASU:3692 GeneID:3692 KEGG:hsa:3692
HGNC:HGNC:6159 PharmGKB:PA29958 ChiTaRS:EIF6 GenomeRNAi:3692
NextBio:14465 IPI:IPI00375391 SMR:B7ZBG9 STRING:B7ZBG9
Ensembl:ENST00000374443 UCSC:uc002xbz.1 Uniprot:B7ZBG9
Length = 226
Score = 482 (174.7 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 95/120 (79%), Positives = 104/120 (86%)
Query: 124 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA 183
ETEEI+ADVL VEVFRQT+A +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVA
Sbjct: 105 ETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVA 164
Query: 184 GTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 243
GTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I MR SLIDS
Sbjct: 165 GTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 224
Score = 142 (55.0 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFY 35
MA R FEN+CE+G F+KLTN +CLVAIGGSE+FY
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFY 35
>UNIPROTKB|B7ZBH1 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9606 "Homo sapiens" [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0005638 "lamin filament" evidence=IEA] InterPro:IPR002769
Pfam:PF01912 SMART:SM00654 GO:GO:0043022 GO:GO:0003743
GO:GO:0042256 PANTHER:PTHR10784 HOVERGEN:HBG001300 GO:GO:0005638
EMBL:AL121753 UniGene:Hs.654848 HGNC:HGNC:6159 ChiTaRS:EIF6
IPI:IPI00640731 SMR:B7ZBH1 STRING:B7ZBH1 Ensembl:ENST00000456600
HOGENOM:HOG000200509 Uniprot:B7ZBH1
Length = 108
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 76/106 (71%), Positives = 91/106 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
MA R FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV SI G RIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60
Query: 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGN 106
R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGN 106
>UNIPROTKB|F8WD20 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9606 "Homo sapiens" [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
InterPro:IPR002769 Pfam:PF01912 GO:GO:0043022 GO:GO:0042256
PANTHER:PTHR10784 EMBL:AL121753 HGNC:HGNC:6159 ChiTaRS:EIF6
IPI:IPI00892804 ProteinModelPortal:F8WD20 SMR:F8WD20 PRIDE:F8WD20
Ensembl:ENST00000440766 ArrayExpress:F8WD20 Bgee:F8WD20
Uniprot:F8WD20
Length = 59
Score = 142 (55.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFY 35
MA R FEN+CE+G F+KLTN +CLVAIGGSE+FY
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFY 35
>UNIPROTKB|F8WDS6 [details] [associations]
symbol:EIF6 "Eukaryotic translation initiation factor 6"
species:9606 "Homo sapiens" [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
InterPro:IPR002769 GO:GO:0043022 GO:GO:0042256 PANTHER:PTHR10784
EMBL:AL121753 HGNC:HGNC:6159 ChiTaRS:EIF6 IPI:IPI00893107
ProteinModelPortal:F8WDS6 SMR:F8WDS6 PRIDE:F8WDS6
Ensembl:ENST00000415116 ArrayExpress:F8WDS6 Bgee:F8WDS6
Uniprot:F8WDS6
Length = 186
Score = 142 (55.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFY 35
MA R FEN+CE+G F+KLTN +CLVAIGGSE+FY
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFY 35
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 245 245 0.00099 113 3 11 22 0.43 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 596 (63 KB)
Total size of DFA: 171 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.81u 0.18s 20.99t Elapsed: 00:00:01
Total cpu time: 20.81u 0.18s 20.99t Elapsed: 00:00:01
Start: Tue May 21 00:55:55 2013 End: Tue May 21 00:55:56 2013