Query 026003
Match_columns 245
No_of_seqs 173 out of 458
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00136 eukaryotic translatio 100.0 3.3E-84 7.3E-89 578.9 31.8 245 1-245 1-247 (247)
2 COG1976 TIF6 Translation initi 100.0 5E-79 1.1E-83 532.3 25.5 220 1-224 2-221 (222)
3 KOG3185 Translation initiation 100.0 4E-78 8.6E-83 520.9 23.0 245 1-245 1-245 (245)
4 PF01912 eIF-6: eIF-6 family; 100.0 8.3E-74 1.8E-78 498.3 14.2 199 3-204 1-199 (199)
5 PRK04046 translation initiatio 100.0 5.9E-65 1.3E-69 450.0 29.3 222 1-226 1-222 (222)
6 cd00527 IF6 Ribosome anti-asso 100.0 8.7E-65 1.9E-69 448.4 29.3 219 3-223 2-220 (220)
7 TIGR00323 eIF-6 translation in 100.0 1E-62 2.3E-67 433.9 26.8 215 4-224 1-215 (215)
8 smart00654 eIF6 translation in 100.0 1.1E-60 2.4E-65 417.0 25.1 200 3-204 1-200 (200)
9 smart00654 eIF6 translation in 100.0 1.2E-45 2.6E-50 322.4 22.0 173 50-226 2-177 (200)
10 cd00527 IF6 Ribosome anti-asso 100.0 3.2E-45 6.8E-50 323.9 22.4 175 1-178 44-220 (220)
11 TIGR00323 eIF-6 translation in 100.0 7.2E-45 1.6E-49 320.6 21.9 172 1-179 42-215 (215)
12 PRK04046 translation initiatio 100.0 1.3E-43 2.8E-48 313.8 23.0 175 48-226 2-177 (222)
13 PTZ00136 eukaryotic translatio 100.0 1.7E-32 3.6E-37 246.0 16.5 127 8-181 99-226 (247)
14 PF01912 eIF-6: eIF-6 family; 100.0 8.7E-31 1.9E-35 228.6 8.7 126 99-226 6-132 (199)
15 COG1976 TIF6 Translation initi 100.0 2.2E-29 4.8E-34 220.5 15.6 127 99-226 9-178 (222)
16 KOG3185 Translation initiation 99.8 8.4E-19 1.8E-23 152.5 11.0 128 99-226 8-137 (245)
17 PRK04323 hypothetical protein; 47.6 95 0.0021 24.4 6.6 67 104-174 10-78 (91)
18 COG3473 Maleate cis-trans isom 43.2 50 0.0011 30.1 5.0 116 15-142 72-212 (238)
19 cd01974 Nitrogenase_MoFe_beta 41.8 1.1E+02 0.0024 29.6 7.6 64 159-243 230-293 (435)
20 PRK14548 50S ribosomal protein 39.4 63 0.0014 24.9 4.4 45 115-181 4-49 (84)
21 cd05402 NT_PAP_TUTase Nucleoti 39.0 83 0.0018 24.0 5.2 68 4-71 21-105 (114)
22 PRK05567 inosine 5'-monophosph 36.2 1.8E+02 0.004 28.7 8.3 118 18-152 9-135 (486)
23 PF02274 Amidinotransf: Amidin 34.9 2.9E+02 0.0064 24.5 8.8 109 72-181 137-257 (281)
24 PF09419 PGP_phosphatase: Mito 33.5 61 0.0013 27.9 4.0 35 105-141 79-113 (168)
25 TIGR03380 agmatine_aguA agmati 32.6 3.5E+02 0.0077 26.0 9.3 60 118-180 122-193 (357)
26 COG3836 HpcH 2,4-dihydroxyhept 32.3 1.4E+02 0.0031 27.6 6.3 164 8-177 14-202 (255)
27 TIGR01286 nifK nitrogenase mol 31.8 1.2E+02 0.0026 30.4 6.3 65 159-244 290-354 (515)
28 COG2957 Peptidylarginine deimi 31.5 2.7E+02 0.0058 26.9 8.1 106 76-181 66-199 (346)
29 PF13167 GTP-bdg_N: GTP-bindin 31.3 1.2E+02 0.0027 23.7 5.0 61 166-226 9-83 (95)
30 PRK05581 ribulose-phosphate 3- 30.6 3.3E+02 0.0072 23.0 9.3 112 33-175 17-130 (220)
31 PF02274 Amidinotransf: Amidin 30.0 2.8E+02 0.0061 24.6 7.8 173 37-210 36-243 (281)
32 PLN02334 ribulose-phosphate 3- 29.8 3.8E+02 0.0082 23.4 10.0 124 21-175 6-136 (229)
33 PLN02591 tryptophan synthase 29.3 1.6E+02 0.0034 26.9 6.1 111 67-210 107-221 (250)
34 cd01972 Nitrogenase_VnfE_like 29.1 1.4E+02 0.0029 28.8 6.0 100 124-242 182-282 (426)
35 CHL00073 chlN photochlorophyll 28.9 56 0.0012 32.5 3.3 95 123-244 207-305 (457)
36 PF08922 DUF1905: Domain of un 28.1 1.7E+02 0.0037 21.8 5.1 69 20-95 11-79 (80)
37 KOG1511 Mevalonate kinase MVK/ 27.4 69 0.0015 31.3 3.5 45 13-57 325-376 (397)
38 PRK04115 hypothetical protein; 26.3 1.3E+02 0.0028 25.4 4.6 76 35-137 23-102 (137)
39 COG0309 HypE Hydrogenase matur 26.2 1E+02 0.0022 29.7 4.4 65 15-88 50-114 (339)
40 CHL00123 rps6 ribosomal protei 24.1 1.3E+02 0.0029 23.2 4.1 67 159-226 12-87 (97)
41 PTZ00191 60S ribosomal protein 23.9 1.3E+02 0.0027 25.7 4.1 45 115-181 65-110 (145)
42 COG0309 HypE Hydrogenase matur 22.6 1.3E+02 0.0027 29.1 4.3 78 106-190 50-137 (339)
43 TIGR03239 GarL 2-dehydro-3-deo 22.6 1.1E+02 0.0023 27.8 3.7 106 46-151 64-177 (249)
44 TIGR01279 DPOR_bchN light-inde 21.9 3.7E+02 0.008 25.8 7.4 81 124-226 168-251 (407)
45 PRK10558 alpha-dehydro-beta-de 21.7 57 0.0012 29.6 1.8 105 46-151 71-184 (256)
46 COG2052 Uncharacterized protei 21.1 1E+02 0.0022 23.9 2.7 63 104-169 10-73 (89)
47 TIGR01302 IMP_dehydrog inosine 20.7 3.8E+02 0.0083 26.2 7.4 70 18-87 2-79 (450)
48 COG0089 RplW Ribosomal protein 20.2 1.4E+02 0.0031 23.5 3.5 31 158-188 25-57 (94)
No 1
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=3.3e-84 Score=578.90 Aligned_cols=245 Identities=73% Similarity=1.162 Sum_probs=241.0
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (247)
T PTZ00136 1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE 80 (247)
T ss_pred CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|++|+||||+|||++|||||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus 81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~L 160 (247)
T PTZ00136 81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGL 160 (247)
T ss_pred HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc--CCCchhHHHHHH
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE--AQPNAIVDEMRK 238 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~--~~~~~~~~~~~~ 238 (245)
|||+++++|+++|+++||||+.+||+|+|+++||+|++|||||++|||+||++|+++||++||++. .++..+..+||+
T Consensus 161 VhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (247)
T PTZ00136 161 VHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS 240 (247)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccCCchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 556668899999
Q ss_pred HhhhhcC
Q 026003 239 SLIDSYV 245 (245)
Q Consensus 239 ~~~~~~~ 245 (245)
+|||+|.
T Consensus 241 ~~~~~~~ 247 (247)
T PTZ00136 241 SLIDTLA 247 (247)
T ss_pred HHHHhhC
Confidence 9999974
No 2
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-79 Score=532.27 Aligned_cols=220 Identities=49% Similarity=0.708 Sum_probs=217.7
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+|+|+ +|+++|+|+||++||+|++|||||+|||+.++|+|
T Consensus 2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E 79 (222)
T COG1976 2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE 79 (222)
T ss_pred ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||+ +.+++|.++++|+||+||.|+||||+||+||++++++.|.|+|+|||||+|++|||.++|||+++.||||+|
T Consensus 80 l~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~L 157 (222)
T COG1976 80 LRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGL 157 (222)
T ss_pred HHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcce
Confidence 999998 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v 224 (245)
|||+++++|+++|+++|||++..||+|+|+++||+|+||||||++||.+||+|||.|||++|++
T Consensus 158 vhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~aLg~ 221 (222)
T COG1976 158 VHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221 (222)
T ss_pred eCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999984
No 3
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-78 Score=520.88 Aligned_cols=245 Identities=81% Similarity=1.234 Sum_probs=242.8
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+||++||+|+++||.||||..+.+++||+.+|++|++.+|+++|+|+|+++||+||+||+||||||+.+||||
T Consensus 1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE 80 (245)
T KOG3185|consen 1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE 80 (245)
T ss_pred CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
|+|||++|||.+.++|+++|.+|+||.|+|||++||||||++++++++|+|+|+|+|+|.+||+.++|||||+.+|+|+|
T Consensus 81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~l 160 (245)
T KOG3185|consen 81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGL 160 (245)
T ss_pred HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHh
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (245)
|||.++-|++++|+++|+||+..||+|+|+..+|+|+++|||-+++|.+||..|+..||.+|++.+++|+.+..+||++|
T Consensus 161 Vhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiFkL~~aqp~~i~~~~R~~l 240 (245)
T KOG3185|consen 161 VHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIFKLNEAQPSSISSELRDTL 240 (245)
T ss_pred ecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHHhhcccCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 026003 241 IDSYV 245 (245)
Q Consensus 241 ~~~~~ 245 (245)
||++.
T Consensus 241 id~~~ 245 (245)
T KOG3185|consen 241 IDSYV 245 (245)
T ss_pred HHhcC
Confidence 99874
No 4
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=8.3e-74 Score=498.35 Aligned_cols=199 Identities=54% Similarity=0.829 Sum_probs=173.2
Q ss_pred eeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHH
Q 026003 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~ 82 (245)
+|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||||||++++|+|++
T Consensus 1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~ 78 (199)
T PF01912_consen 1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE 78 (199)
T ss_dssp -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence 59999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 026003 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+||+++| +++|+++++|+||+||+|+|||++|++||+++++++|.|+|+|||||+|++|||.++|||++++||+|+|||
T Consensus 79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~Lvh 157 (199)
T PF01912_consen 79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVH 157 (199)
T ss_dssp HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-
T ss_pred HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEEC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceE
Q 026003 163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 204 (245)
Q Consensus 163 p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Ga 204 (245)
|+++++|+++|+++|+||+.+||||+|+++||+|++||||||
T Consensus 158 P~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~ 199 (199)
T PF01912_consen 158 PDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA 199 (199)
T ss_dssp TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred CCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence 999999999999999999999999999999999999999997
No 5
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=5.9e-65 Score=449.99 Aligned_cols=222 Identities=41% Similarity=0.620 Sum_probs=218.9
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||+|+++||+|||+|++++++.++.|++.|+ +++++++|+||+++|+|++||+||+|+|+.++++|
T Consensus 1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e 78 (222)
T PRK04046 1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE 78 (222)
T ss_pred CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence 8999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++|++.| +++|.+++.+++++||++++||++|++||+++++.++.|+|+|||+|.+.+|++.++||+++++||+|+|
T Consensus 79 ~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~l 156 (222)
T PRK04046 79 LELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGL 156 (222)
T ss_pred HHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEE
Confidence 99999997 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
|||+++++|+++|++.|+||+.+||+|+|.++||+|++|||||++|||+||++|+++||++||+.+
T Consensus 157 v~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~l~~~~ 222 (222)
T PRK04046 157 VHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222 (222)
T ss_pred ECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853
No 6
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=8.7e-65 Score=448.45 Aligned_cols=219 Identities=64% Similarity=0.961 Sum_probs=211.6
Q ss_pred eeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHH
Q 026003 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~ 82 (245)
+|++|+|+|+||+|+++||+|||+|++.++++.+.|+|+|+ +++++++|+||++||+|++||++|+|||+.++|+|++
T Consensus 2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~ 79 (220)
T cd00527 2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ 79 (220)
T ss_pred eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence 69999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 026003 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+||+.|+.++.+.+...+.+++||++++||++||+||.++++.++.|+|+|+|+|++.+|++.+.+|+++++||+|+|||
T Consensus 80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~Lvh 159 (220)
T cd00527 80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVH 159 (220)
T ss_pred HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEEC
Confidence 99999876666655555555999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhC
Q 026003 163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFK 223 (245)
Q Consensus 163 p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~ 223 (245)
|+++++|++.|+++||||+.+||+|+|.++|||+++|||||++|||+||++|+++||++||
T Consensus 160 P~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie~~l~ 220 (220)
T cd00527 160 PKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220 (220)
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 7
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=1e-62 Score=433.88 Aligned_cols=215 Identities=56% Similarity=0.895 Sum_probs=211.7
Q ss_pred eeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHH
Q 026003 4 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQH 83 (245)
Q Consensus 4 r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~ 83 (245)
|++|+|||+||+|+++||+|||+|++.++++.+.|+|+|+ +++++++|+||++||+|+++|++|+|||+..++++++.
T Consensus 1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~ 78 (215)
T TIGR00323 1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS 78 (215)
T ss_pred CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence 6899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCC
Q 026003 84 LRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP 163 (245)
Q Consensus 84 l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p 163 (245)
|++. ++|.+++++.+++||++++||++|++||.++++.++.|+|.||++|++.+|++..++|+++++||+|+||||
T Consensus 79 l~e~----l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP 154 (215)
T TIGR00323 79 LPDS----LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHP 154 (215)
T ss_pred hHhh----cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECC
Confidence 9987 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 026003 164 HTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 164 ~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v 224 (245)
+++++|++.|+|+|||++.+||+|+|.++|||+++|||||++|||+||++|+++||++||+
T Consensus 155 ~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~l~~ 215 (215)
T TIGR00323 155 QTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEALGL 215 (215)
T ss_pred CCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 8
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=1.1e-60 Score=417.03 Aligned_cols=200 Identities=72% Similarity=1.085 Sum_probs=197.7
Q ss_pred eeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHH
Q 026003 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~ 82 (245)
.|++|+|||+||+|+++||+|||+|++.+++.++.|++.|+ +++++|+|++++++|+|++||+||+|||+.++|+|++
T Consensus 1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~ 78 (200)
T smart00654 1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ 78 (200)
T ss_pred CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence 38999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 026003 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+|+++|+++++|.+++.+++++||+++|||++||+||+++++.+|.|+|+||||++++||+|.++|||.+++||+|+|||
T Consensus 79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~ 158 (200)
T smart00654 79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVH 158 (200)
T ss_pred HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceE
Q 026003 163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 204 (245)
Q Consensus 163 p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Ga 204 (245)
|+++++|+++|+++|++|+..||||+|+++||+|++|||||+
T Consensus 159 ~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~ 200 (200)
T smart00654 159 PDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA 200 (200)
T ss_pred CCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence 999999999999999999999999999999999999999996
No 9
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=1.2e-45 Score=322.41 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=167.6
Q ss_pred EEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHH
Q 026003 50 KTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEI 128 (245)
Q Consensus 50 ~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~ 128 (245)
+++|+||++||+|+++|++|+|||+.++++|+++|++.|+ ++|.++. .+++++||++++||++|++||.++++.++.
T Consensus 2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~ 79 (200)
T smart00654 2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQH 79 (200)
T ss_pred eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHH
Confidence 6899999999999999999999999999999999999986 7787766 999999999999999999999999999999
Q ss_pred HHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEE
Q 026003 129 IADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC 206 (245)
Q Consensus 129 I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galv 206 (245)
|++.|+ ++|.+.+.. .+.+|+++++||+|+||||+++++|+++|+++|||++.+||+ +|.++|||+++|||||++|
T Consensus 80 i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv 157 (200)
T smart00654 80 LRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLV 157 (200)
T ss_pred HHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEE
Confidence 999997 999999887 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCCcc
Q 026003 207 GSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 207 g~~tt~~El~~Ie~~l~v~~ 226 (245)
||+||++|+++||++||++.
T Consensus 158 ~~~tt~~El~~ie~~l~v~~ 177 (200)
T smart00654 158 HPDTSEEELKELSELLGVPL 177 (200)
T ss_pred CCCCCHHHHHHHHHHhCCCc
Confidence 99999999999999999985
No 10
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=3.2e-45 Score=323.87 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=168.1
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+||++||+|+++|++|+|+|+..+++..+.|++.|+.+++++++++.+| ++|.|++||+||+|||+.++|+|
T Consensus 44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e 122 (220)
T cd00527 44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA 122 (220)
T ss_pred cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence 78999999999999999999999999999999999999999998999999999999 99999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCe
Q 026003 81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRG 158 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G 158 (245)
+++|++.|+. +|.+.+ .+.+++||+++|||++||+||+++++.++.|+|+||||+.++|+ +|+++|||.+++||+|
T Consensus 123 ~~~i~~~L~v--~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG 200 (220)
T cd00527 123 EEIIEDVLGV--EVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKG 200 (220)
T ss_pred HHHHHHhcCC--cEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCE
Confidence 9999999865 455544 56999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eeeCCCCCHHHHHHHhhhcC
Q 026003 159 GLVHPHTSIEDLDELSTLLQ 178 (245)
Q Consensus 159 ~LV~p~~~~~El~~l~~~l~ 178 (245)
+||||+++++|+++|+++|+
T Consensus 201 ~lvg~~tt~~El~~ie~~l~ 220 (220)
T cd00527 201 AVVGSDTTGPELSRIEDALG 220 (220)
T ss_pred EEECCCCCHHHHHHHHHHhC
Confidence 99999999999999999986
No 11
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=7.2e-45 Score=320.64 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=165.9
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||+|+++||+|||+|++.+++..+.|+|.|+ |++++|+| +++|.|++||+||+|||+.++++|
T Consensus 42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e 116 (215)
T TIGR00323 42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT 116 (215)
T ss_pred cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence 7899999999999999999999999999999999999999999 99999999 999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCe
Q 026003 81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRG 158 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G 158 (245)
+++|++.|+ ++|.+++ .+.+++|+++++||++|||||+++++.++.|+|+||||+.++|| +|.++|||.+++||+|
T Consensus 117 ~~~i~~~L~--v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G 194 (215)
T TIGR00323 117 EELISDVLG--VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKG 194 (215)
T ss_pred HHHHHHhcC--CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCE
Confidence 999999986 5666666 89999999999999999999999999999999999999999999 5999999999999999
Q ss_pred eeeCCCCCHHHHHHHhhhcCc
Q 026003 159 GLVHPHTSIEDLDELSTLLQV 179 (245)
Q Consensus 159 ~LV~p~~~~~El~~l~~~l~V 179 (245)
+||||+++++|+++|+++|+.
T Consensus 195 ~lv~~~tt~~El~~ie~~l~~ 215 (215)
T TIGR00323 195 AVVGLDTTGPELSIIEEALGL 215 (215)
T ss_pred EEECCCCCHHHHHHHHHHhCc
Confidence 999999999999999999873
No 12
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=1.3e-43 Score=313.84 Aligned_cols=175 Identities=23% Similarity=0.304 Sum_probs=169.1
Q ss_pred EEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEE-EEecCCCCceeeEEEeeCceEEEecCCChhHH
Q 026003 48 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVV-QRIEERLSALGNCIACNDHVALAHTDLDRETE 126 (245)
Q Consensus 48 vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v-~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~ 126 (245)
+++++|+||+.||+++++|++++|+|+.++++|+++|++.|. +++ +..-.+.+++|+|+++||+++++||+++++..
T Consensus 2 i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~ 79 (222)
T PRK04046 2 IRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEEL 79 (222)
T ss_pred cEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHH
Confidence 689999999999999999999999999999999999999984 555 44568999999999999999999999999999
Q ss_pred HHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEE
Q 026003 127 EIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC 206 (245)
Q Consensus 127 ~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galv 206 (245)
+.|+|+|||+|+++++ +++++|+++++||+|+||||.++++|++.|++.|||++.++|+ +|.+++||+++||||||+|
T Consensus 80 ~~l~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv 157 (222)
T PRK04046 80 ELLKEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLV 157 (222)
T ss_pred HHHHHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEE
Confidence 9999999999999999 9999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCCcc
Q 026003 207 GSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 207 g~~tt~~El~~Ie~~l~v~~ 226 (245)
||+||++|+++|+++||++.
T Consensus 158 ~p~~t~~ei~~i~~~l~v~~ 177 (222)
T PRK04046 158 HPDATDEELKFLEDLFKVEV 177 (222)
T ss_pred CCCCCHHHHHHHHHHhCCce
Confidence 99999999999999999985
No 13
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=245.97 Aligned_cols=127 Identities=16% Similarity=0.277 Sum_probs=124.2
Q ss_pred eCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhh
Q 026003 8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (245)
Q Consensus 8 ~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 87 (245)
..-+.||+|+++||+|||+||++++++.+.|+++|+ ||+++++|+|+++||++++|
T Consensus 99 ~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~---------------------- 154 (247)
T PTZ00136 99 ERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLG--VEVFRTTIAGNVLVGTYCVF---------------------- 154 (247)
T ss_pred CccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCCceEEEEEEE----------------------
Confidence 456899999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec-CceeeeeEEEEcCCeeeeCCCCC
Q 026003 88 LPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIA-GNILVGSYCSFSNRGGLVHPHTS 166 (245)
Q Consensus 88 l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~LV~p~~~ 166 (245)
||++|||||+++++..+.|+|+||||++++||+ |+++|||.+++||+|++|||+++
T Consensus 155 -----------------------Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT 211 (247)
T PTZ00136 155 -----------------------TNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTT 211 (247)
T ss_pred -----------------------eCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHHHHhhhcCcce
Q 026003 167 IEDLDELSTLLQVPL 181 (245)
Q Consensus 167 ~~El~~l~~~l~V~v 181 (245)
++|+++|+++|+++.
T Consensus 212 ~~El~~Ie~~l~v~~ 226 (247)
T PTZ00136 212 ATEISVIERIFKLRR 226 (247)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999987
No 14
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=99.97 E-value=8.7e-31 Score=228.57 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=110.5
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhc-
Q 026003 99 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL- 177 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l- 177 (245)
.+.+++|+|+++||++||+||+++++..+.|++.|+||+++++|+|+++||+|+++|++|+|||+.++|+|++.|++.+
T Consensus 6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~ 85 (199)
T PF01912_consen 6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP 85 (199)
T ss_dssp TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 178 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 178 ~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
++++ ..++...+++|+.|+|||+||++||+.+.++.+.|+|+||++.
T Consensus 86 ~v~V--~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV 132 (199)
T PF01912_consen 86 DVNV--EVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEV 132 (199)
T ss_dssp TSEE--EEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEE
T ss_pred CceE--EEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceE
Confidence 6665 8899999999999999999999999999999999999999976
No 15
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.2e-29 Score=220.55 Aligned_cols=127 Identities=30% Similarity=0.451 Sum_probs=123.6
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe--------------------
Q 026003 99 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------------------- 158 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------------------- 158 (245)
++.+.||+|+.++|++|++||+++++.++.|+++|+|||++++|+|+++||+++++|++|
T Consensus 9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~ 88 (222)
T COG1976 9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG 88 (222)
T ss_pred cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence 689999999999999999999999999999999999999999999999999999997776
Q ss_pred -----------------------eeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHH
Q 026003 159 -----------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 215 (245)
Q Consensus 159 -----------------------~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El 215 (245)
+|+||+.+++..|.|+|.|||++.+||+ +|.+.|||..++|++|+||||++|.+|+
T Consensus 89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El 167 (222)
T COG1976 89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL 167 (222)
T ss_pred ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhCCcc
Q 026003 216 SVIESVFKLRE 226 (245)
Q Consensus 216 ~~Ie~~l~v~~ 226 (245)
+++++.|||+.
T Consensus 168 e~Lse~f~V~v 178 (222)
T COG1976 168 EELSELFGVPV 178 (222)
T ss_pred HHHHHHhCeeE
Confidence 99999999986
No 16
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=8.4e-19 Score=152.54 Aligned_cols=128 Identities=20% Similarity=0.299 Sum_probs=125.6
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 026003 99 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 176 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~ 176 (245)
++++.+|.|...++.||+|.-.-|+......+..|+ +|++.++|+|++++|++|++|.+|+|||..++|+|++.|++.
T Consensus 8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS 87 (245)
T KOG3185|consen 8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS 87 (245)
T ss_pred cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence 678999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 177 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 177 l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
|.-+|..-+|.....++|+.+.|||.-|+|||+...+.-+.|.|+|++++
T Consensus 88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV 137 (245)
T KOG3185|consen 88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV 137 (245)
T ss_pred CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence 99999999999999999999999999999999999999999999999987
No 17
>PRK04323 hypothetical protein; Provisional
Probab=47.57 E-value=95 Score=24.41 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=46.0
Q ss_pred eeeEEEeeCceEEEecCCChhHHHHHHhhh-CCceEEEeecCceeeeeEEEEcCCe-eeeCCCCCHHHHHHHh
Q 026003 104 LGNCIACNDHVALAHTDLDRETEEIIADVL-GVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELS 174 (245)
Q Consensus 104 iGn~i~~ND~~alV~p~l~~~~~~~I~d~L-gVeV~~~tIag~~lVGs~~v~Nn~G-~LV~p~~~~~El~~l~ 174 (245)
.||++.+++=+|+++|+ |....+.+++.= .=.++..|-+ +-.=|+.+ ++.| .+++|..++.=.+++.
T Consensus 10 fgn~V~~~rIIAIv~~~-Sap~Kr~~~~ak~~g~lidaT~G--rktrsvII-tds~hV~LSai~~eTl~~R~~ 78 (91)
T PRK04323 10 FGNIVSANRIIAIVSPE-SAPIKRIIQEARERGMLIDATYG--RKTRAVII-TDSGHVILSAIQPETIAHRLS 78 (91)
T ss_pred CCcEEEcccEEEEECCC-cHHHHHHHHHHHHcCeEEeccCC--CceeEEEE-ecCCeEEEeeCCHHHHHHHHh
Confidence 37999999999999999 666666666543 2346666643 22334444 5555 9999988887666665
No 18
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.19 E-value=50 Score=30.12 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=75.3
Q ss_pred eEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCC-eEEecCC--CCHHHHHHHHhhC---
Q 026003 15 VFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKN-GLLLPHT--TTDQELQHLRNSL--- 88 (245)
Q Consensus 15 v~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~n-Gllvp~~--~~d~El~~l~~~l--- 88 (245)
+|..++-+ .+.+++.+++...+|++.-+ +|++-|+-| .+-|-=..|-++ -+|-|++ ++..|.+.|++.-
T Consensus 72 ~Y~CtsgS-~i~G~~~d~ei~~~ie~~~~--v~vvTts~A--vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfei 146 (238)
T COG3473 72 VYGCTSGS-LIGGPGYDKEIAQRIEEAKG--VPVVTTSTA--VVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEI 146 (238)
T ss_pred EEecccee-eecCCchhHHHHHHHHhccC--CceeechHH--HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEE
Confidence 56655554 46678889999999999998 999988533 222222223233 3445554 4667888888762
Q ss_pred --------CCCeEEEEec-----------CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee
Q 026003 89 --------PDQVVVQRIE-----------ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI 142 (245)
Q Consensus 89 --------~~~v~v~~l~-----------~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI 142 (245)
+|++++.|++ ..-.+=|.||.|++--. =+.++.+++.+|+||+-..-
T Consensus 147 v~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiSCTnlRt-------~eii~~lE~~~G~PVvsSN~ 212 (238)
T COG3473 147 VDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFISCTNLRT-------FEIIEKLERDTGVPVVSSNQ 212 (238)
T ss_pred EEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEEeecccc-------HHHHHHHHHHhCCceeeccH
Confidence 3444444443 12335578888887433 46789999999999987543
No 19
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.76 E-value=1.1e+02 Score=29.65 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=44.5
Q ss_pred eeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHH
Q 026003 159 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRK 238 (245)
Q Consensus 159 ~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~ 238 (245)
++++|.....-.+.|++-+|+|.... . ..+|.+-|..-+..|.+.||.+. ....+..|+
T Consensus 230 iv~~~~~~~~~a~~Le~~~giP~~~~----~--------------~p~G~~~t~~~l~~l~~~~g~~~---~~~i~~er~ 288 (435)
T cd01974 230 LALQEYATEKTAKFLEKKCKVPVETL----N--------------MPIGVAATDEFLMALSELTGKPI---PEELEEERG 288 (435)
T ss_pred EEECccccHHHHHHHHHHhCCCeeec----C--------------CCcChHHHHHHHHHHHHHhCCCC---CHHHHHHHH
Confidence 45678777777888898889996332 1 24588889999999999999864 222244444
Q ss_pred Hhhhh
Q 026003 239 SLIDS 243 (245)
Q Consensus 239 ~~~~~ 243 (245)
.+.|.
T Consensus 289 ~~~~~ 293 (435)
T cd01974 289 RLVDA 293 (435)
T ss_pred HHHHH
Confidence 45444
No 20
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.40 E-value=63 Score=24.86 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=34.4
Q ss_pred EEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcce
Q 026003 115 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPL 181 (245)
Q Consensus 115 alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v 181 (245)
.|.+|-+++++...+++. |-..+.|+|+++..|++ .++.+|+|+|
T Consensus 4 iI~~PviTEK~~~~~e~~----------------------n~y~F~V~~~anK~eIK~AvE~lf~VkV 49 (84)
T PRK14548 4 IIKYPLVTEKAMNLIEKE----------------------NKLTFIVDRRATKPDIKRAVEELFDVKV 49 (84)
T ss_pred chhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCce
Confidence 456777777776655432 55678999999999998 6778899997
No 21
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=39.04 E-value=83 Score=24.05 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=48.7
Q ss_pred eeeeeCCCceeeEEeecC-cEEEEeCCC---ChhHHHHHHHHhcC-------------CccEEEEEecCceEEeEEeeee
Q 026003 4 RLMFENSCEVGVFSKLTN-AFCLVAIGG---SESFYSTFEAELAD-------------VIPVVKTSIGGNRIIGRLCVGN 66 (245)
Q Consensus 4 r~~~~gs~~IGv~~~~t~-~~~lvp~~~---~~~~~~~i~e~L~~-------------~v~vv~t~I~gs~lvG~l~~GN 66 (245)
++..+||.--|.+..-.| |+++..+.. ..+..+.+++.|.. .||+++.....+.+-==++++|
T Consensus 21 ~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~~~ 100 (114)
T cd05402 21 KLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFNN 100 (114)
T ss_pred EEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEccc
Confidence 678999999998887665 677776653 45677777776631 2577777777777777777788
Q ss_pred CCeEE
Q 026003 67 KNGLL 71 (245)
Q Consensus 67 ~nGll 71 (245)
.+|+.
T Consensus 101 ~~g~~ 105 (114)
T cd05402 101 LNGIR 105 (114)
T ss_pred chHHH
Confidence 77754
No 22
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=36.20 E-value=1.8e+02 Score=28.67 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=63.6
Q ss_pred eecCcEEEEeCCCC--h---hHHHHHHHHhcCCccEEEE---EecCceEEeEEeeeeCCeEEecCCCCHHHH-HHHHhhC
Q 026003 18 KLTNAFCLVAIGGS--E---SFYSTFEAELADVIPVVKT---SIGGNRIIGRLCVGNKNGLLLPHTTTDQEL-QHLRNSL 88 (245)
Q Consensus 18 ~~t~~~~lvp~~~~--~---~~~~~i~e~L~~~v~vv~t---~I~gs~lvG~l~~GN~nGllvp~~~~d~El-~~l~~~l 88 (245)
.+.||+.|+|.-.+ + +.-..+.+.++-.+|++.+ ++.+..+.=.+...---|+|= ...+.+|. +.+++
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~-~~~~~e~~~~~I~~-- 85 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIH-KNMSIEEQAEEVRK-- 85 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEec-CCCCHHHHHHHHHH--
Confidence 67899999996332 2 2234566677655889986 777777766666666666654 44444444 44442
Q ss_pred CCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEE
Q 026003 89 PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 152 (245)
Q Consensus 89 ~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~ 152 (245)
|+..++.+. .+...++|+.+-+....+-..-+...+...=.+.+++|.+.
T Consensus 86 -----vk~~~dim~---------~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt 135 (486)
T PRK05567 86 -----VKRSESGVV---------TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIIT 135 (486)
T ss_pred -----hhhhhhccc---------CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEE
Confidence 333333322 45556677665443332222223332222223456666665
No 23
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=34.90 E-value=2.9e+02 Score=24.50 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=65.3
Q ss_pred ecCCCCHHHHHHHHhhCCCC------eEEEEecC--CCCceeeEEEeeCceEEEecCCChh-HHHHHHhhhC---CceEE
Q 026003 72 LPHTTTDQELQHLRNSLPDQ------VVVQRIEE--RLSALGNCIACNDHVALAHTDLDRE-TEEIIADVLG---VEVFR 139 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~------v~v~~l~~--~~~aiGn~i~~ND~~alV~p~l~~~-~~~~I~d~Lg---VeV~~ 139 (245)
+...++.+=++.|++.++.. +.+.+... -+--=-.+-...++.++++|++-++ ..+.+.+.|+ .+++.
T Consensus 137 ~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~iI~ 216 (281)
T PF02274_consen 137 VGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDAFDPEEEEELEQALKERGFEIIE 216 (281)
T ss_dssp ESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCHHCTHHHHHHHHHHSSSTCEEEE
T ss_pred ecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcccchHHHHHHHHHhcccCcEEEE
Confidence 56788888899999999877 22222111 1111123344456777777776544 4777888877 67888
Q ss_pred EeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcce
Q 026003 140 QTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPL 181 (245)
Q Consensus 140 ~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v 181 (245)
.+-.....-|+-++.=+.|-++.+.....-.+.|++. |+.+
T Consensus 217 v~~~e~~~~~~N~l~l~~~~vi~~~~~~~~~~~L~~~-G~~v 257 (281)
T PF02274_consen 217 VPEEEQWNFACNVLSLGPGKVIAYASNPRTNEQLEKA-GIEV 257 (281)
T ss_dssp ESSCSCSGGGGS-EEECTTEEEEETTHHHHHHHHHHT-T-EE
T ss_pred eccchhhhccCCEEEecCCEEEECCCCHHHHHHHHhc-CCeE
Confidence 8755544444433333566666666667767777765 6665
No 24
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=33.52 E-value=61 Score=27.90 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=25.9
Q ss_pred eeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEe
Q 026003 105 GNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT 141 (245)
Q Consensus 105 Gn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~t 141 (245)
..+|+.|..+.-- |...+.++.+++.||+||++..
T Consensus 79 ~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 79 RVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred eEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeC
Confidence 3566666654332 5567889999999999999865
No 25
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=32.56 E-value=3.5e+02 Score=25.95 Aligned_cols=60 Identities=23% Similarity=0.418 Sum_probs=41.8
Q ss_pred ecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe-------eee----CCCCCHHHHH-HHhhhcCcc
Q 026003 118 HTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------GLV----HPHTSIEDLD-ELSTLLQVP 180 (245)
Q Consensus 118 ~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------~LV----~p~~~~~El~-~l~~~l~V~ 180 (245)
+.+.+...-+.|.+.+|++.++.. ..+=|=....|-+| ||+ +|..|++|++ +|++.||+.
T Consensus 122 ~~~~D~~v~~~ia~~~g~~~~~~~---lvlEGG~ie~dG~GtlltTe~clln~nRNP~ls~~eIe~~Lk~~LGv~ 193 (357)
T TIGR03380 122 PWDKDDLVARKVCELEGIDRYRAD---FVLEGGSIHVDGEGTLLTTEECLLSEGRNPHLTKEQIEEKLKDYLGVE 193 (357)
T ss_pred CcchHHHHHHHHHHHcCCCccccC---eEEeCCcEEECCCeeEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCC
Confidence 456777888999999999988752 22333333335555 454 5677888886 788889988
No 26
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=32.31 E-value=1.4e+02 Score=27.58 Aligned_cols=164 Identities=19% Similarity=0.273 Sum_probs=108.4
Q ss_pred eCCCceeeEEeecCcEE------------EEeCCCC----hhHHHHHHHHhc-CCccEEEEEecCceEEeEEeeeeCCeE
Q 026003 8 ENSCEVGVFSKLTNAFC------------LVAIGGS----ESFYSTFEAELA-DVIPVVKTSIGGNRIIGRLCVGNKNGL 70 (245)
Q Consensus 8 ~gs~~IGv~~~~t~~~~------------lvp~~~~----~~~~~~i~e~L~-~~v~vv~t~I~gs~lvG~l~~GN~nGl 70 (245)
.|-+.||.|..+.+-|+ ++--.-. +..+..++.... ..-|+|+-.++....|=.+.=-.-.++
T Consensus 14 ~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g~~~~Ikq~LD~GAqtl 93 (255)
T COG3836 14 AGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVGDPVMIKQLLDIGAQTL 93 (255)
T ss_pred CCCceEEeeecCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCCCHHHHHHHHcccccee
Confidence 67889999998888664 3322222 334445555544 335799999998888877777778899
Q ss_pred EecCCCCHHHHHHHHhhC---CCCeE-EE---EecCCCCceeeEEE-eeCceEEEecCCChhHHHHHHhhhCCceEEEee
Q 026003 71 LLPHTTTDQELQHLRNSL---PDQVV-VQ---RIEERLSALGNCIA-CNDHVALAHTDLDRETEEIIADVLGVEVFRQTI 142 (245)
Q Consensus 71 lvp~~~~d~El~~l~~~l---~~~v~-v~---~l~~~~~aiGn~i~-~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI 142 (245)
|+|..-|-++-+++-+.. |.|++ |. ---++.+.+..|.. +||+.|++-.--+++-.+.+.+.+.||=+-+
T Consensus 94 liPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVDg-- 171 (255)
T COG3836 94 LIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVDG-- 171 (255)
T ss_pred eeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCCe--
Confidence 999999999988886654 44411 11 01245556666654 9999999998888888888888887773322
Q ss_pred cCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhc
Q 026003 143 AGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL 177 (245)
Q Consensus 143 ag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l 177 (245)
-++|..=..-+.|.+-+|.-. +-.+.|+..+
T Consensus 172 ---vFiGPaDLaas~G~~gn~~hp-eV~~aI~~~~ 202 (255)
T COG3836 172 ---VFIGPADLAASLGHLGNPGHP-EVQAAIEHII 202 (255)
T ss_pred ---EEECHHHHHHHcCCCCCCCCH-HHHHHHHHHH
Confidence 244544455677777777643 3344555543
No 27
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=31.77 E-value=1.2e+02 Score=30.43 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=46.1
Q ss_pred eeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHH
Q 026003 159 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRK 238 (245)
Q Consensus 159 ~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~ 238 (245)
++++|.....-.+.|++-+|+|. +..+.| +|.+-|+.-+..|.+.+|.+. +..+ ...|.
T Consensus 290 ivl~~~~~~~~a~~l~~~~g~p~----~~~~~P--------------iGi~~Td~fL~~la~~~g~~i--p~~i-~~eR~ 348 (515)
T TIGR01286 290 VLLQPYTLRKTKEYIEKTWKQET----PKLNIP--------------LGVKGTDEFLMKVSEISGQPI--PAEL-TKERG 348 (515)
T ss_pred EEEchhhhHHHHHHHHHHhCCCc----ccCCCC--------------ccHHHHHHHHHHHHHHHCCCC--CHHH-HHHHH
Confidence 55677777777788888889986 223334 688889999999999999865 2233 45555
Q ss_pred Hhhhhc
Q 026003 239 SLIDSY 244 (245)
Q Consensus 239 ~~~~~~ 244 (245)
.++|.|
T Consensus 349 rl~dam 354 (515)
T TIGR01286 349 RLVDAM 354 (515)
T ss_pred HHHHHH
Confidence 666654
No 28
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=31.50 E-value=2.7e+02 Score=26.90 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=74.5
Q ss_pred CCHHHHHHHHhhCC-CCeEEEEecCCCCc---eeeEEEeeCceE--------------EEecCCChhHHHHHHhhhCCce
Q 026003 76 TTDQELQHLRNSLP-DQVVVQRIEERLSA---LGNCIACNDHVA--------------LAHTDLDRETEEIIADVLGVEV 137 (245)
Q Consensus 76 ~~d~El~~l~~~l~-~~v~v~~l~~~~~a---iGn~i~~ND~~a--------------lV~p~l~~~~~~~I~d~LgVeV 137 (245)
+.+++++.-|..|+ .+|.+.+++.+.+- -|-.++.||++- ..+-+.++...+++.+.++...
T Consensus 66 V~~~~~~~a~a~l~~~~V~~~~i~~nDtW~RDtGP~~~i~~~g~~~a~d~~FNaWGGlkf~~e~Dd~Va~k~~~~~~k~~ 145 (346)
T COG2957 66 VPDDDLEDARARLDDANVEIVRIDTNDTWLRDTGPTIVINDKGDLRAVDFGFNAWGGLKFPWELDDQVASKLAELLFKAP 145 (346)
T ss_pred echHHHHHHHhhcCCCceEEEEccCCCcHhhccCCcEEecCCCcEEEecceeccccccccccccchHHHHHHHHhhccCc
Confidence 35678888888888 45888888765543 365566666542 5667788899999999999544
Q ss_pred EEEe-----ecCceeeeeEEEEcCCeeee----CCCCCHHHHH-HHhhhcCcce
Q 026003 138 FRQT-----IAGNILVGSYCSFSNRGGLV----HPHTSIEDLD-ELSTLLQVPL 181 (245)
Q Consensus 138 ~~~t-----Iag~~lVGs~~v~Nn~G~LV----~p~~~~~El~-~l~~~l~V~v 181 (245)
.++. =+....=|-=.+.++.-||+ +|..++++++ .|++.||++-
T Consensus 146 ~~~~~fiLEGGsi~~dG~Gt~LTT~~CLLn~nRNPhl~~~~ie~~L~e~Lg~kk 199 (346)
T COG2957 146 LKTDPFILEGGSIHSDGEGTLLTTEQCLLNDNRNPHLNQEGIENKLKEYLGAKK 199 (346)
T ss_pred cccCCeeeecCceeecCceeEEeehHhhcCCCCCCCcCHHHHHHHHHHHhCccE
Confidence 4321 12233445556667777888 7899999998 6888999873
No 29
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=31.27 E-value=1.2e+02 Score=23.72 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=44.8
Q ss_pred CHHHHHHHhhhcCcceeEEee-c----cCccceeeEEE---------EcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 166 SIEDLDELSTLLQVPLVAGTV-N----RGSEVIGAGLT---------VNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 166 ~~~El~~l~~~l~V~v~~gTv-N----~G~~~VGsgiv---------aNd~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
+-+|++.|.+..|.++....+ + ....++|+|=+ .+-.-+++..+.|......+|+.||+++
T Consensus 9 ~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V 83 (95)
T PF13167_consen 9 SLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKV 83 (95)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCee
Confidence 346888888889988743222 2 23467888743 3445678888999999999999999987
No 30
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=30.60 E-value=3.3e+02 Score=23.01 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=56.9
Q ss_pred hHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCC-CHHHHHHHHhhCCCCeEEEEecCC-CCceeeEEEe
Q 026003 33 SFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTT-TDQELQHLRNSLPDQVVVQRIEER-LSALGNCIAC 110 (245)
Q Consensus 33 ~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~-~d~El~~l~~~l~~~v~v~~l~~~-~~aiGn~i~~ 110 (245)
.+.+.+++.....++.++.. -..|-.+|++. ..+.++.|++..+..+.+..+-.. ..-+-.+.-+
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~-------------~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~ 83 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVD-------------VMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKA 83 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEe-------------CccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHc
Confidence 44556666655335566654 33555666644 688899998765422333222111 0011111123
Q ss_pred eCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhh
Q 026003 111 NDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELST 175 (245)
Q Consensus 111 ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~ 175 (245)
.=++..+|-+-++...+.++...+..+. -|..++|....+.++.+..
T Consensus 84 g~d~v~vh~~~~~~~~~~~~~~~~~~~~------------------~g~~~~~~t~~e~~~~~~~ 130 (220)
T PRK05581 84 GADIITFHVEASEHIHRLLQLIKSAGIK------------------AGLVLNPATPLEPLEDVLD 130 (220)
T ss_pred CCCEEEEeeccchhHHHHHHHHHHcCCE------------------EEEEECCCCCHHHHHHHHh
Confidence 3355667776655555555555443321 2334567776666666643
No 31
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=30.00 E-value=2.8e+02 Score=24.60 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=95.3
Q ss_pred HHHHHhcCC-ccEEEEEec------CceEEeEEeeeeCCeEEecCCCC---HHHHHHHHhhCCC-------CeEEEE---
Q 026003 37 TFEAELADV-IPVVKTSIG------GNRIIGRLCVGNKNGLLLPHTTT---DQELQHLRNSLPD-------QVVVQR--- 96 (245)
Q Consensus 37 ~i~e~L~~~-v~vv~t~I~------gs~lvG~l~~GN~nGllvp~~~~---d~El~~l~~~l~~-------~v~v~~--- 96 (245)
.+.+.|..+ ++|+...-. ++-+.-=..+--.+|+++.++.. ..|....+..+.. .+.+..
T Consensus 36 ~l~~~L~~~Gv~V~~~~~~~~~~~p~~vF~rD~~~~~~~~~ii~~m~~~~R~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (281)
T PF02274_consen 36 ALVEALRSNGVEVIELPPLLEEPLPDMVFTRDPGVVIGGGVIIGRMRAPSRRGEEDVYKEIFEKHPFNIPRVLDIEEENG 115 (281)
T ss_dssp HHHHHHHTTT-EEEEEHHHHHTT-TTTT-TTCCEEEECTEEEE-B-SSGGGHGHHHHHHHHHHHSCCCTCCEEEEEEC--
T ss_pred HHHHHHHhCCcEEEEeCCccCCCCCCeEEcCCcEEEEcCCEEEeCCChHHhcCcchHHHHHHHhhccccceeeCCccccc
Confidence 344444433 777765433 22333222223668999998865 3455554443311 122221
Q ss_pred ecCCCCceeeEEEeeCceEE--EecCCChhHHHHHHhhhCCc------eEEEee---cCceeeeeEEEEcCCeeeeCCCC
Q 026003 97 IEERLSALGNCIACNDHVAL--AHTDLDRETEEIIADVLGVE------VFRQTI---AGNILVGSYCSFSNRGGLVHPHT 165 (245)
Q Consensus 97 l~~~~~aiGn~i~~ND~~al--V~p~l~~~~~~~I~d~LgVe------V~~~tI---ag~~lVGs~~v~Nn~G~LV~p~~ 165 (245)
-+.-..- |.++..+++..+ +..--+++.++.+++.|+-. +....- .-..+=-.++.+..+-++++|.+
T Consensus 116 ~~~~lEG-GDv~~~~~~~~v~G~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~ 194 (281)
T PF02274_consen 116 DPGYLEG-GDVLVLGDNVLVIGVGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDA 194 (281)
T ss_dssp TTS-B-G-GGEEEESTEEEEEEESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCH
T ss_pred cCceecC-cEEEEECCEEEEEeecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcc
Confidence 1334445 999988887777 67778889999999999988 111111 22233346777888889988887
Q ss_pred CHHH-HHHHhhhcC---cceeEEeeccCccceeeEEEEcCceEEEcCCC
Q 026003 166 SIED-LDELSTLLQ---VPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 210 (245)
Q Consensus 166 ~~~E-l~~l~~~l~---V~v~~gTvN~G~~~VGsgivaNd~Galvg~~t 210 (245)
-+++ .+.+.+.|+ .++..-+-..-..+-+|.+..++.-+++....
T Consensus 195 ~~~~~~~~l~~~l~~~~~~iI~v~~~e~~~~~~N~l~l~~~~vi~~~~~ 243 (281)
T PF02274_consen 195 FDPEEEEELEQALKERGFEIIEVPEEEQWNFACNVLSLGPGKVIAYASN 243 (281)
T ss_dssp HCTHHHHHHHHHHSSSTCEEEEESSCSCSGGGGS-EEECTTEEEEETTH
T ss_pred cchHHHHHHHHHhcccCcEEEEeccchhhhccCCEEEecCCEEEECCCC
Confidence 6554 667777655 44444333222355566677765555555543
No 32
>PLN02334 ribulose-phosphate 3-epimerase
Probab=29.77 E-value=3.8e+02 Score=23.38 Aligned_cols=124 Identities=10% Similarity=0.115 Sum_probs=68.8
Q ss_pred CcEEEEeCCCC---hhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCC-HHHHHHHHhhCCCCeEEEE
Q 026003 21 NAFCLVAIGGS---ESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTT-DQELQHLRNSLPDQVVVQR 96 (245)
Q Consensus 21 ~~~~lvp~~~~---~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~-d~El~~l~~~l~~~v~v~~ 96 (245)
++|.+.|.-.+ .++.+.+++.+...++.++..+.+..+ +|+... .+.++.||+....-+.++.
T Consensus 6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f-------------~~~~~~g~~~~~~l~~~~~~~~~vhl 72 (229)
T PLN02334 6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHF-------------VPNLTIGPPVVKALRKHTDAPLDCHL 72 (229)
T ss_pred CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCc-------------CCccccCHHHHHHHHhcCCCcEEEEe
Confidence 67777776553 356678888877679999998876543 455432 3677888876322245543
Q ss_pred ec-CCCCceeeEEEeeCceEEEecC--CChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHH
Q 026003 97 IE-ERLSALGNCIACNDHVALAHTD--LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDEL 173 (245)
Q Consensus 97 l~-~~~~aiGn~i~~ND~~alV~p~--l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l 173 (245)
+= .-..-+-.+..+.=++..+|.+ .++...+.++..++-.. .+ |.-+||.++.+.++.+
T Consensus 73 mv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~---------~i---------Gls~~~~t~~~~~~~~ 134 (229)
T PLN02334 73 MVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGM---------KA---------GVVLNPGTPVEAVEPV 134 (229)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCC---------eE---------EEEECCCCCHHHHHHH
Confidence 32 1111222333344456666777 24444455555544321 12 2334676666666655
Q ss_pred hh
Q 026003 174 ST 175 (245)
Q Consensus 174 ~~ 175 (245)
.+
T Consensus 135 ~~ 136 (229)
T PLN02334 135 VE 136 (229)
T ss_pred Hh
Confidence 43
No 33
>PLN02591 tryptophan synthase
Probab=29.34 E-value=1.6e+02 Score=26.85 Aligned_cols=111 Identities=22% Similarity=0.200 Sum_probs=65.2
Q ss_pred CCeEEecCCCCHHHHHHHHhhCC-CCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCc
Q 026003 67 KNGLLLPHTTTDQELQHLRNSLP-DQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGN 145 (245)
Q Consensus 67 ~nGllvp~~~~d~El~~l~~~l~-~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~ 145 (245)
=+|+|+|..-. +|.+.+++.+. .++ +.+.+++|..+++-.+.|.+.=.==+
T Consensus 107 v~GviipDLP~-ee~~~~~~~~~~~gl-------------------~~I~lv~Ptt~~~ri~~ia~~~~gFI-------- 158 (250)
T PLN02591 107 VHGLVVPDLPL-EETEALRAEAAKNGI-------------------ELVLLTTPTTPTERMKAIAEASEGFV-------- 158 (250)
T ss_pred CCEEEeCCCCH-HHHHHHHHHHHHcCC-------------------eEEEEeCCCCCHHHHHHHHHhCCCcE--------
Confidence 58999999876 56655554421 122 23568899999888888877621111
Q ss_pred eeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCcc---ceeeEEEEcCceEEEcCCC
Q 026003 146 ILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSE---VIGAGLTVNDWTAFCGSDT 210 (245)
Q Consensus 146 ~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~---~VGsgivaNd~Galvg~~t 210 (245)
-+|++..+--.+..+ |...++-++++++..++|+..| +|.. -+....=..-.|++||+..
T Consensus 159 Y~Vs~~GvTG~~~~~--~~~~~~~i~~vk~~~~~Pv~vG---FGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 159 YLVSSTGVTGARASV--SGRVESLLQELKEVTDKPVAVG---FGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred EEeeCCCCcCCCcCC--chhHHHHHHHHHhcCCCceEEe---CCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 244444333333222 3334555889999889998654 3333 2232222336788888754
No 34
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=29.11 E-value=1.4e+02 Score=28.84 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=58.2
Q ss_pred hHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe-eeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCc
Q 026003 124 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDW 202 (245)
Q Consensus 124 ~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~ 202 (245)
..++.+=+.+|++|....=+|..+=-...+.+..- ++++|.....-.+.|++-+|+|.... .
T Consensus 182 ~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~----~------------- 244 (426)
T cd01972 182 DEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKA----P------------- 244 (426)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEec----C-------------
Confidence 34555556689998754322232222222223333 44566665666677888888886322 1
Q ss_pred eEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHhhh
Q 026003 203 TAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLID 242 (245)
Q Consensus 203 Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~ 242 (245)
...|.+-|..-+..|.+.||.+.. -+...++.|+.+.+
T Consensus 245 -~P~G~~~T~~~l~~ia~~~g~~~~-~e~~i~~e~~~~~~ 282 (426)
T cd01972 245 -QPYGIEATDKWLREIAKVLGMEAE-AEAVIEREHERVAP 282 (426)
T ss_pred -CccCHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHH
Confidence 235888899999999999998652 22233444444444
No 35
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=28.89 E-value=56 Score=32.51 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=67.4
Q ss_pred hhHHHHHHhhhCCceEEE----eecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEE
Q 026003 123 RETEEIIADVLGVEVFRQ----TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLT 198 (245)
Q Consensus 123 ~~~~~~I~d~LgVeV~~~----tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgiv 198 (245)
-...+.+-+-+|++|... ++...+-+| .|-.=|+++|..+ +-...|++-+++|.. +.++.
T Consensus 207 ~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~----~~~~~c~~~P~ls-~aa~~Le~~~gvp~~------~~P~P----- 270 (457)
T CHL00073 207 ASQLTLELKRQGIKVSGWLPSQRYTDLPSLG----EGVYVCGVNPFLS-RTATTLMRRRKCKLI------GAPFP----- 270 (457)
T ss_pred HHHHHHHHHHcCCeEeEEeCCCCHHHHHhhC----cccEEEEcCcchH-HHHHHHHHHhCCcee------ecCCc-----
Confidence 556677778889998632 233344444 3445589999999 778899888898862 23342
Q ss_pred EcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHhhhhc
Q 026003 199 VNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 244 (245)
Q Consensus 199 aNd~Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~ 244 (245)
+|.+-|+.-+..|.++||++ ++.+ ...|..++|.|
T Consensus 271 -------iGi~~Td~fLr~Ia~~~G~~---pe~l-~~Er~rl~dal 305 (457)
T CHL00073 271 -------IGPDGTRAWIEKICSVFGIE---PQGL-EEREEQIWESL 305 (457)
T ss_pred -------CcHHHHHHHHHHHHHHhCcC---HHHH-HHHHHHHHHHH
Confidence 79999999999999999974 3445 66666666654
No 36
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=28.08 E-value=1.7e+02 Score=21.83 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=36.3
Q ss_pred cCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEE
Q 026003 20 TNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95 (245)
Q Consensus 20 t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~ 95 (245)
...|.-+|.+..+++-.. --+ -.-|+.+|+|..+=++|.-.-+.+.++| +..+=.+.+.....|.+.|+
T Consensus 11 ~~~fv~vP~~v~~~l~~~---~~g--~v~V~~tI~g~~~~~sl~p~g~G~~~Lp--v~~~vRk~~g~~~Gd~V~v~ 79 (80)
T PF08922_consen 11 GWTFVEVPFDVAEELGEG---GWG--RVPVRGTIDGHPWRTSLFPMGNGGYILP--VKAAVRKAIGKEAGDTVEVT 79 (80)
T ss_dssp S-EEEE--S-HHHHH--S-----S---EEEEEEETTEEEEEEEEESSTT-EEEE--E-HHHHHHHT--TTSEEEEE
T ss_pred ceEEEEeCHHHHHHhccc---cCC--ceEEEEEECCEEEEEEEEECCCCCEEEE--EcHHHHHHcCCCCCCEEEEE
Confidence 345666776665543322 123 5678999999999999999667788998 33333333433333335443
No 37
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=27.39 E-value=69 Score=31.30 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=37.2
Q ss_pred eeeEEeecC------cEEEEeCCCChhHHHHHHHHhcCC-ccEEEEEecCce
Q 026003 13 VGVFSKLTN------AFCLVAIGGSESFYSTFEAELADV-IPVVKTSIGGNR 57 (245)
Q Consensus 13 IGv~~~~t~------~~~lvp~~~~~~~~~~i~e~L~~~-v~vv~t~I~gs~ 57 (245)
.|.+.++|. -++|+|++...+.++.++++|.+| .++..|.++|..
T Consensus 325 ~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~gf~v~~t~lGG~G 376 (397)
T KOG1511|consen 325 LGIHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESHGFEVFETELGGPG 376 (397)
T ss_pred hCcceecccCCCCceEEEEECCCCchHHHHHHHHHHHhcCcceeeccCCCCc
Confidence 456666665 378999999999999999999866 789999999864
No 38
>PRK04115 hypothetical protein; Provisional
Probab=26.31 E-value=1.3e+02 Score=25.39 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCC---eEEEEecCCCCcee-eEEEe
Q 026003 35 YSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALG-NCIAC 110 (245)
Q Consensus 35 ~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~---v~v~~l~~~~~aiG-n~i~~ 110 (245)
.+.+.|.|+..-|-|... .|| -+.+.-+||+.|++.+|.+ +.+-.+=+-.+..| -++..
T Consensus 23 rktL~eLL~e~~P~i~lr-dGs----------------~h~~kr~ELe~L~~~l~~~~~~lrLPIile~~~~~~~g~~~V 85 (137)
T PRK04115 23 RKTLCELLKEDKPHVILR-DGS----------------RHRIKRRELEFLKELLDEDACRLRLPIILEIDSSLGEGAIVV 85 (137)
T ss_pred HHHHHHHHhCCCCeEEec-CCc----------------eEEecHHHHHHHHHhccchhhheeeeEEEEEecCCCceEEEE
Confidence 456777777555555432 222 2457889999999999887 55555545555553 23333
Q ss_pred eCceEEEecCCChhHHHHHHhhhCCce
Q 026003 111 NDHVALAHTDLDRETEEIIADVLGVEV 137 (245)
Q Consensus 111 ND~~alV~p~l~~~~~~~I~d~LgVeV 137 (245)
++ +..++.|+..||-+.
T Consensus 86 rG----------~~evk~IskiLg~~~ 102 (137)
T PRK04115 86 RG----------KEEVKVISKILGKED 102 (137)
T ss_pred cC----------HHHHHHHHHHhCccc
Confidence 32 458899999999885
No 39
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=1e+02 Score=29.68 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=53.2
Q ss_pred eEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhC
Q 026003 15 VFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88 (245)
Q Consensus 15 v~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l 88 (245)
+++..||.|.+.|+-++.... + -=.|+.++++-..-|+-..==+-+|++|.....++|+++-++.
T Consensus 50 ~la~tTD~~~i~P~ff~~~di-------G--~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i~~si 114 (339)
T COG0309 50 VLAFTTDPFVIDPLFFPGGDI-------G--KLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERILKSI 114 (339)
T ss_pred eEEEEeCCeEecccccCCCce-------E--EEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHHHHHH
Confidence 899999999999988877522 2 2367778888888888777778899999999999999887765
No 40
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=24.15 E-value=1.3e+02 Score=23.23 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=39.5
Q ss_pred eeeCCCCCHHHHHHHhhhc-------CcceeEEeeccCccceeeEEEEcCce--EEEcCCCCHHHHHHHHHhhCCcc
Q 026003 159 GLVHPHTSIEDLDELSTLL-------QVPLVAGTVNRGSEVIGAGLTVNDWT--AFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 159 ~LV~p~~~~~El~~l~~~l-------~V~v~~gTvN~G~~~VGsgivaNd~G--alvg~~tt~~El~~Ie~~l~v~~ 226 (245)
.+++|+.++++++.+-+-+ |..+..-. +.|..-+.=-|==+.+| +++.-+.++.-+..+++.|++.+
T Consensus 12 ~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~-~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 12 YLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQ-NRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE-eecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 6899999999988665543 22221111 22322211112224555 45566667888999999998866
No 41
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.86 E-value=1.3e+02 Score=25.68 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=37.6
Q ss_pred EEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcce
Q 026003 115 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPL 181 (245)
Q Consensus 115 alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v 181 (245)
.|.+|-+++++...+++. |-.-++|++.++..|++ .++.+++|.|
T Consensus 65 IIk~Pl~TEKa~~~~E~~----------------------N~yvF~Vd~kAnK~qIK~AVEklf~VkV 110 (145)
T PTZ00191 65 IIKYPLTTEKAMKKIEDN----------------------NTLVFIVDQRANKTQIKKAVEKLYDVKV 110 (145)
T ss_pred hhhcccccHHHHHHHhhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCee
Confidence 567899999998887765 45568999999999998 6777899997
No 42
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=1.3e+02 Score=29.09 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=59.0
Q ss_pred eEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh-------cC
Q 026003 106 NCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL-------LQ 178 (245)
Q Consensus 106 n~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~-------l~ 178 (245)
.+.+++|.+.+.|+-++... -|-=.+..+..+..+-|+-...=+-+++++|..+.++++++-+. +|
T Consensus 50 ~la~tTD~~~i~P~ff~~~d-------iG~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i~~si~e~a~~~G 122 (339)
T COG0309 50 VLAFTTDPFVIDPLFFPGGD-------IGKLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERILKSIDEEAEEAG 122 (339)
T ss_pred eEEEEeCCeEecccccCCCc-------eEEEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 58899999999999887662 12235667777777888777777888999999999999977543 78
Q ss_pred cceeEE---eeccCc
Q 026003 179 VPLVAG---TVNRGS 190 (245)
Q Consensus 179 V~v~~g---TvN~G~ 190 (245)
|++..| .+..+.
T Consensus 123 v~IvtGdTkV~~~~~ 137 (339)
T COG0309 123 VSIVTGDTKVVPGGK 137 (339)
T ss_pred CeEEccCceeecCCC
Confidence 887553 555553
No 43
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=22.60 E-value=1.1e+02 Score=27.76 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred ccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhC---CCCeEEEEecCCCCceee---E-EEeeCceEEEe
Q 026003 46 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL---PDQVVVQRIEERLSALGN---C-IACNDHVALAH 118 (245)
Q Consensus 46 v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l---~~~v~v~~l~~~~~aiGn---~-i~~ND~~alV~ 118 (245)
.++||..-..-..+....=.--.|+++|..-|-+|.+++.+.. |.|..=.--..+....|. | -.+|++..+++
T Consensus 64 ~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~ 143 (249)
T TIGR03239 64 APVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLV 143 (249)
T ss_pred CcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEE
Confidence 4677777777777777777778999999999999999998764 333110000001111221 2 23688888888
Q ss_pred cCCChhHHHHHHhhhCCc-eEEEeecCceeeeeE
Q 026003 119 TDLDRETEEIIADVLGVE-VFRQTIAGNILVGSY 151 (245)
Q Consensus 119 p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~ 151 (245)
.-=+.+.++.+++.+.+| |--..++-.-|--++
T Consensus 144 ~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~sl 177 (249)
T TIGR03239 144 QIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAAL 177 (249)
T ss_pred EECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHc
Confidence 888889999999999887 444555555544333
No 44
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.88 E-value=3.7e+02 Score=25.82 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=47.3
Q ss_pred hHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe---eeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEc
Q 026003 124 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG---GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 200 (245)
Q Consensus 124 ~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G---~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaN 200 (245)
..++.+=+-+|+++.. .+-+.. +.-+... ..| ..++|... .-.+.|++-+|+|... ...|
T Consensus 168 ~elk~lL~~~Gi~v~~-~lpd~~-~~e~~~~-~~~~~~~~~~~~~~-~~A~~Le~~~GiP~~~----~~~P--------- 230 (407)
T TIGR01279 168 DQLRLELKQLGIPVVG-FLPASH-FTELPVI-GPGTVVAPLQPYLS-DTATTLRRERGAKVLS----APFP--------- 230 (407)
T ss_pred HHHHHHHHHcCCeEEE-EeCCCC-cchhhhc-CCCeEEEEechHHH-HHHHHHHHHhCCcccc----CCCC---------
Confidence 4456677777888862 111211 1111110 011 35666655 3567788878888622 2222
Q ss_pred CceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 201 DWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 201 d~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
+|.+-|..-+..|.+.||.+.
T Consensus 231 -----iGi~~T~~~l~~la~~~g~~~ 251 (407)
T TIGR01279 231 -----FGPDGTRRFLEAIAAEFGIEV 251 (407)
T ss_pred -----cCHHHHHHHHHHHHHHhCcCH
Confidence 477889999999999999863
No 45
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.71 E-value=57 Score=29.65 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=71.6
Q ss_pred ccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhC---CCCeE-EEEecCCCCceee---E-EEeeCceEEE
Q 026003 46 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL---PDQVV-VQRIEERLSALGN---C-IACNDHVALA 117 (245)
Q Consensus 46 v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l---~~~v~-v~~l~~~~~aiGn---~-i~~ND~~alV 117 (245)
.++||..-.....+....=.--.|+++|..-|-+|.+.+-+.. |.|.. +. -..+.+..|. | -.+|++..++
T Consensus 71 ~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~-~~~~~~~y~~~~~y~~~an~~~~vi 149 (256)
T PRK10558 71 APVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVS-VSHRANMFGTVPDYFAQSNKNITVL 149 (256)
T ss_pred CcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCC-ccccccccCChHHHHHHhccccEEE
Confidence 5678887777777777777788999999999999999987664 33310 00 0001122221 1 2368888888
Q ss_pred ecCCChhHHHHHHhhhCCc-eEEEeecCceeeeeE
Q 026003 118 HTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSY 151 (245)
Q Consensus 118 ~p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~ 151 (245)
+.-=+.+.++.+++.+.++ |--..++-.-|-.++
T Consensus 150 ~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~sl 184 (256)
T PRK10558 150 VQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 184 (256)
T ss_pred EEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHc
Confidence 8888888999999999887 555556666655444
No 46
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.07 E-value=1e+02 Score=23.86 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=40.6
Q ss_pred eeeEEEeeCceEEEecCCChhHHHHHHhhhCCc-eEEEeecCceeeeeEEEEcCCeeeeCCCCCHHH
Q 026003 104 LGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIED 169 (245)
Q Consensus 104 iGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~E 169 (245)
.||.+.+|--+|+|+|+-.+ ..+.|.|.-+-- .+-.|.+.- .-+..+..++-.+++.--.+.-
T Consensus 10 FGNivsanRviaIVsPESaP-iKRii~eArdr~~LIDATYGRr--TRavii~DS~hvILSAiQPETv 73 (89)
T COG2052 10 FGNIVSANRVIAIVSPESAP-IKRIIQEARDRGMLIDATYGRR--TRAVIITDSDHVILSAIQPETV 73 (89)
T ss_pred cccEeecceEEEEECCCccc-HHHHHHHHHhcCcEEEcccCce--eeEEEEecCCcEEEeccChHHH
Confidence 58999999999999999655 456777765532 444444322 2345566777777665544443
No 47
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=20.69 E-value=3.8e+02 Score=26.20 Aligned_cols=70 Identities=7% Similarity=0.133 Sum_probs=37.3
Q ss_pred eecCcEEEEeCCCC--h---hHHHHHHHHhcCCccEEEE---EecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhh
Q 026003 18 KLTNAFCLVAIGGS--E---SFYSTFEAELADVIPVVKT---SIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (245)
Q Consensus 18 ~~t~~~~lvp~~~~--~---~~~~~i~e~L~~~v~vv~t---~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 87 (245)
.+.||+.|+|.-.+ + +.-..+.+.+.=++|++.. ++..+.+--.+..+..-|+|=-+...++|-+.+++.
T Consensus 2 ~t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~V 79 (450)
T TIGR01302 2 LTFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRV 79 (450)
T ss_pred CCccceEecccccccCccccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhh
Confidence 35688888886221 1 1122333333323777763 344455545555555667765555556666666643
No 48
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=20.21 E-value=1.4e+02 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=23.7
Q ss_pred eeeeCCCCCHHHHH-HHhhhcCcceeE-Eeecc
Q 026003 158 GGLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 188 (245)
Q Consensus 158 G~LV~p~~~~~El~-~l~~~l~V~v~~-gTvN~ 188 (245)
=+.|+|+++..|++ .++++|+|.+.. -|+|.
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~ 57 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFGVKVEKVNTLNT 57 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEe
Confidence 36799999999987 688899999733 44443
Done!