Query 026003
Match_columns 245
No_of_seqs 173 out of 458
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_J EIF6, translation initi 100.0 1.7E-86 5.7E-91 593.1 18.4 245 1-245 4-248 (248)
2 1g62_A Ribosome anti-associati 100.0 9.6E-82 3.3E-86 555.7 18.0 224 1-224 1-224 (224)
3 4adx_I AIF6; ribosome, protein 100.0 2.8E-72 9.4E-77 495.5 29.5 221 1-226 1-221 (222)
4 1g61_A EIF-6, translation init 100.0 2E-71 6.7E-76 491.6 15.8 221 1-224 3-227 (228)
5 4adx_I AIF6; ribosome, protein 100.0 6.3E-40 2.1E-44 289.2 22.4 172 2-179 46-219 (222)
6 1g61_A EIF-6, translation init 100.0 3.8E-37 1.3E-41 272.4 9.0 172 3-179 49-227 (228)
7 1g62_A Ribosome anti-associati 100.0 4E-32 1.4E-36 239.5 8.5 125 8-179 99-224 (224)
8 4a18_J EIF6, translation initi 99.9 9E-28 3.1E-32 214.4 10.7 128 99-226 11-140 (248)
9 1jdw_A L-arginine\:glycine ami 56.3 34 0.0012 32.0 7.9 107 73-181 270-390 (423)
10 3i4a_A N(G),N(G)-dimethylargin 56.0 60 0.002 28.8 9.3 124 14-142 152-285 (308)
11 3i4a_A N(G),N(G)-dimethylargin 47.2 1.5E+02 0.0051 26.2 13.6 137 68-209 109-261 (308)
12 3j21_T 50S ribosomal protein L 40.1 55 0.0019 24.2 5.4 51 116-188 7-59 (86)
13 1vq8_S 50S ribosomal protein L 39.7 54 0.0018 24.2 5.2 51 116-188 6-58 (85)
14 3lqv_A PRE-mRNA branch site pr 35.5 55 0.0019 23.5 4.8 101 61-180 10-110 (115)
15 1wex_A Hypothetical protein (r 34.8 1.2E+02 0.0042 22.0 6.7 54 61-131 17-70 (104)
16 1jdw_A L-arginine\:glycine ami 32.8 2.3E+02 0.008 26.2 9.7 118 21-143 262-396 (423)
17 3r8s_T 50S ribosomal protein L 32.0 66 0.0022 24.0 4.7 44 116-181 11-55 (93)
18 1h70_A NG, NG-dimethylarginine 31.8 1.3E+02 0.0046 25.3 7.3 107 24-143 126-239 (255)
19 2zkr_s 60S ribosomal protein L 29.7 93 0.0032 25.6 5.6 53 114-188 75-129 (156)
20 4f25_A Polyadenylate-binding p 29.6 1.2E+02 0.0041 22.0 5.8 61 62-135 8-68 (115)
21 2zjr_Q 50S ribosomal protein L 28.1 48 0.0017 24.9 3.3 33 155-187 23-57 (95)
22 1x4c_A Splicing factor, argini 27.8 1.2E+02 0.0039 21.7 5.4 48 72-132 23-70 (108)
23 2dgt_A RNA-binding protein 30; 27.2 1.4E+02 0.005 20.3 5.7 47 72-132 18-64 (92)
24 3aek_A Light-independent proto 26.8 74 0.0025 29.4 5.1 173 13-243 119-297 (437)
25 3u5e_X 60S ribosomal protein L 25.4 1.2E+02 0.0041 24.5 5.4 52 115-188 62-115 (142)
26 3h7c_X Agmatine deiminase; str 25.2 1.8E+02 0.0062 26.9 7.4 99 79-180 67-206 (383)
27 1bwd_A ADT, protein (inosamine 23.5 1.4E+02 0.0047 26.7 6.1 105 73-181 195-315 (348)
28 2ad9_A Polypyrimidine tract-bi 22.4 1.9E+02 0.0064 21.9 5.9 48 72-131 39-86 (119)
29 1sjq_A Polypyrimidine tract-bi 22.4 1.4E+02 0.0049 22.2 5.1 50 72-133 24-73 (105)
30 2ghp_A U4/U6 snRNA-associated 22.0 3.4E+02 0.011 22.4 9.9 101 60-181 42-145 (292)
31 1qgu_B Protein (nitrogenase mo 21.1 1.1E+02 0.0039 29.0 5.2 64 159-243 287-350 (519)
32 1wg1_A KIAA1579 protein, homol 20.6 2E+02 0.0069 19.4 5.3 48 72-132 13-60 (88)
33 3r27_A HnRNP L, heterogeneous 20.4 2.1E+02 0.0071 21.1 5.6 53 72-136 29-81 (100)
34 3beg_B Splicing factor, argini 20.1 1.8E+02 0.006 21.1 5.2 50 72-134 24-73 (115)
No 1
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=1.7e-86 Score=593.07 Aligned_cols=245 Identities=65% Similarity=1.074 Sum_probs=224.4
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E 83 (248)
T 4a18_J 4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE 83 (248)
T ss_dssp CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|+||+||||+|||++|||||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus 84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~L 163 (248)
T 4a18_J 84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGL 163 (248)
T ss_dssp HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHh
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSL 240 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (245)
|||.++++|+++|+++|+||+..||+|+|+++||+|++||||||+|||+||++|+++||++||+++++++++.++||++|
T Consensus 164 Vhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 243 (248)
T 4a18_J 164 VHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243 (248)
T ss_dssp ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHHTTCC---------------
T ss_pred ECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred hhhcC
Q 026003 241 IDSYV 245 (245)
Q Consensus 241 ~~~~~ 245 (245)
||+|.
T Consensus 244 ~~~~~ 248 (248)
T 4a18_J 244 VMNLE 248 (248)
T ss_dssp -----
T ss_pred HhhcC
Confidence 99873
No 2
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=9.6e-82 Score=555.72 Aligned_cols=224 Identities=75% Similarity=1.156 Sum_probs=222.9
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (224)
T 1g62_A 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE 80 (224)
T ss_dssp CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|++|+|||++|||++|||||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus 81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~L 160 (224)
T 1g62_A 81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL 160 (224)
T ss_dssp HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v 224 (245)
|||+++++|+++|+++|+||+.+||+|+|.++||||++|||||++|||+||++|+++||++||+
T Consensus 161 VhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~f~v 224 (224)
T 1g62_A 161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224 (224)
T ss_dssp ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 3
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.8e-72 Score=495.45 Aligned_cols=221 Identities=34% Similarity=0.519 Sum_probs=218.1
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus 1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e 78 (222)
T 4adx_I 1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE 78 (222)
T ss_pred CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||+. +++|.++++|++++||+++|||++|||||++++++++.|+|+|||+|++.+|++.++||+++++||+|+|
T Consensus 79 ~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~l 155 (222)
T 4adx_I 79 IDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGAL 155 (222)
T ss_pred HHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEE
Confidence 9999983 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
|||+++++|+++|+++|+||+.+||+|+|+++||||++|||||++|||+||++|+++||++||+.+
T Consensus 156 VhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~f~~~~ 221 (222)
T 4adx_I 156 LNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221 (222)
T ss_pred ECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 4
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=2e-71 Score=491.64 Aligned_cols=221 Identities=35% Similarity=0.483 Sum_probs=219.0
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus 3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e 80 (228)
T 1g61_A 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE 80 (228)
T ss_dssp CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence 8999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhC---CCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCC
Q 026003 81 LQHLRNSL---PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNR 157 (245)
Q Consensus 81 l~~l~~~l---~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~ 157 (245)
+++||++| |++++|+++++|++++||+++|||++|||||++ ++..+.|+|+|+|+|++.+|++..++|++++++|+
T Consensus 81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~ 159 (228)
T 1g61_A 81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK 159 (228)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceEEEEeCCccceeeEEEEecc
Confidence 99999998 789999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred eeeeCCCCCHHHHHHHhhhcCcc-eeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 026003 158 GGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 158 G~LV~p~~~~~El~~l~~~l~V~-v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v 224 (245)
|+||||+++++|+++|+++|||| +.+||+|+|+++||||++|||||++|||+||++|+++||++||+
T Consensus 160 G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 160 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred eEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999997
No 5
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.3e-40 Score=289.20 Aligned_cols=172 Identities=23% Similarity=0.263 Sum_probs=162.7
Q ss_pred ceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHH
Q 026003 2 ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQEL 81 (245)
Q Consensus 2 ~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El 81 (245)
+.|++|+||++||+|++.|++++|||++++++..+.|++ ++ +++.+++ ++++.+|.++++|+||+|||+.++++|+
T Consensus 46 ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~--v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~ 121 (222)
T 4adx_I 46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AG--VEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDAL 121 (222)
T ss_pred EEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cC--CeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHH
Confidence 478999999999999999999999999999999999999 57 9999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec-CceeeeeEEEEcCCee
Q 026003 82 QHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIA-GNILVGSYCSFSNRGG 159 (245)
Q Consensus 82 ~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~ 159 (245)
+.|++.|+ ++|.+.. .+++++||++++||++|||||+++++..+.|+|+||||+.++|++ |+++|||.+++||+|+
T Consensus 122 e~I~d~L~--VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~ 199 (222)
T 4adx_I 122 QVIGDVLE--VDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGV 199 (222)
T ss_pred HHHHHhhC--ccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEE
Confidence 99999985 5554432 469999999999999999999999999999999999999999997 9999999999999999
Q ss_pred eeCCCCCHHHHHHHhhhcCc
Q 026003 160 LVHPHTSIEDLDELSTLLQV 179 (245)
Q Consensus 160 LV~p~~~~~El~~l~~~l~V 179 (245)
+|||+++++|+++|+++|+.
T Consensus 200 lvg~~TT~~El~~ie~~f~~ 219 (222)
T 4adx_I 200 LVGEETTGPELARIEEALGF 219 (222)
T ss_pred EECCCCCHHHHHHHHHHhcc
Confidence 99999999999999999984
No 6
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=3.8e-37 Score=272.40 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=159.6
Q ss_pred eeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhc---CC--ccEEEEEecCceEEeEEeeeeCCeEEecCCCC
Q 026003 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELA---DV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTT 77 (245)
Q Consensus 3 ~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~---~~--v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~ 77 (245)
.|.+|+||++||+|++.|++++|||++.+++.++.|++.|+ +. |+++++ +++.+|.++++|+||+|||+-.
T Consensus 49 v~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~---~~~alGnli~~Nd~galV~~el- 124 (228)
T 1g61_A 49 LQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPEL- 124 (228)
T ss_dssp EECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGG-
T ss_pred EEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcC---CCcceEEEEEecCccEEeCHHH-
Confidence 58899999999999999999999999999999999999984 22 566775 9999999999999999999966
Q ss_pred HHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCc-eEEEeec-CceeeeeEEEEc
Q 026003 78 DQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIA-GNILVGSYCSFS 155 (245)
Q Consensus 78 d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVe-V~~~tIa-g~~lVGs~~v~N 155 (245)
++..+.|++.|+.++.++++.++.++.||.+++| ++|||||+++++..+.|+|+|||| +.++|++ |+++|||.+++|
T Consensus 125 ~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN-~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaN 203 (228)
T 1g61_A 125 KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTN-KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIAN 203 (228)
T ss_dssp GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECS-SEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEEC
T ss_pred HHHHHHHHHhcCCceEEEEeCCccceeeEEEEec-ceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEE
Confidence 5555677778777777888999999999999999 999999999999999999999999 9999999 999999999999
Q ss_pred CCeeeeCCCCCHHHHHHHhhhcCc
Q 026003 156 NRGGLVHPHTSIEDLDELSTLLQV 179 (245)
Q Consensus 156 n~G~LV~p~~~~~El~~l~~~l~V 179 (245)
|+|++|||+++++|+++|+++|++
T Consensus 204 n~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 204 SKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp SSCEEEETTCCHHHHHHHHHHHTC
T ss_pred CCEEEECCCCCHHHHHHHHHHhcc
Confidence 999999999999999999999986
No 7
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=99.97 E-value=4e-32 Score=239.53 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=122.0
Q ss_pred eCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhh
Q 026003 8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (245)
Q Consensus 8 ~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 87 (245)
..-++||+|+++||+||||||++++++++.|+++|+ ||+++++|+|+++||++++||+
T Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn-------------------- 156 (224)
T 1g62_A 99 ERLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSN-------------------- 156 (224)
T ss_dssp CCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECS--------------------
T ss_pred CcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCcceEEEEEEEeC--------------------
Confidence 356899999999999999999999999999999999 9999999999999999999995
Q ss_pred CCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCeeeeCCCCC
Q 026003 88 LPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHTS 166 (245)
Q Consensus 88 l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LV~p~~~ 166 (245)
++|||||+++++..+.|+|+||||+.++|| +|+++|||.+++||+|+||||+++
T Consensus 157 -------------------------~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT 211 (224)
T 1g62_A 157 -------------------------QGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTT 211 (224)
T ss_dssp -------------------------SCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCC
T ss_pred -------------------------cEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhhhcCc
Q 026003 167 IEDLDELSTLLQV 179 (245)
Q Consensus 167 ~~El~~l~~~l~V 179 (245)
++|+++|+++|++
T Consensus 212 ~~El~~Ie~~f~v 224 (224)
T 1g62_A 212 APELSVIESIFRL 224 (224)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999986
No 8
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=99.95 E-value=9e-28 Score=214.40 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=124.1
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 026003 99 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 176 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~ 176 (245)
++.+++|+|+.+||+|||+||+.+++..+.+++.|+ +|+++++|+|+++||+++++|+||+|||+.++|+|++.|++.
T Consensus 11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 90 (248)
T 4a18_J 11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS 90 (248)
T ss_dssp TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence 689999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 177 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 177 l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
|+-.+...++....+++|+.++|||++|+|||+.+.+..+.|+|+||++.
T Consensus 91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV 140 (248)
T 4a18_J 91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEV 140 (248)
T ss_dssp SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEE
T ss_pred CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcE
Confidence 87666669999999999999999999999999999999999999999986
No 9
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=56.29 E-value=34 Score=31.98 Aligned_cols=107 Identities=8% Similarity=0.067 Sum_probs=68.8
Q ss_pred cCCCCHHHHHHHHhhCCCCeEEEEecCCCC---ce-eeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCce--
Q 026003 73 PHTTTDQELQHLRNSLPDQVVVQRIEERLS---AL-GNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNI-- 146 (245)
Q Consensus 73 p~~~~d~El~~l~~~l~~~v~v~~l~~~~~---ai-Gn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~-- 146 (245)
+..++.+.++.|++.|+.+.+|..++.... =+ ..+..+.+..++++|+..++..+.+++. +.+++..+.....
T Consensus 270 s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~-~~~iI~~p~~~~~~~ 348 (423)
T 1jdw_A 270 SQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA-GWTIITPPTPIIPDD 348 (423)
T ss_dssp CSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT-TCEEECCCCCCCCTT
T ss_pred cccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC-CCEEEECCCchhccc
Confidence 355678999999999864566766664322 22 3566788888899998877777777764 7777776543321
Q ss_pred --------eeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcce
Q 026003 147 --------LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPL 181 (245)
Q Consensus 147 --------lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v 181 (245)
..|+-+..=|.|.++.|.-..+-.+.|++. |.++
T Consensus 349 ~~~~~s~~~~~~N~L~inpg~VI~~~~~~~~~~~L~~~-G~~V 390 (423)
T 1jdw_A 349 HPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKL-GITT 390 (423)
T ss_dssp SCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEE
T ss_pred cccccccccceeeEEEECCCEEEEeCCCHHHHHHHHHC-CCEE
Confidence 113322222335555566677778888876 7665
No 10
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=56.05 E-value=60 Score=28.81 Aligned_cols=124 Identities=11% Similarity=0.142 Sum_probs=74.7
Q ss_pred eeEEeecCcEEEEeCC--CChhHHHHHHHHh-cCCccEEEEEec-CceEEeEEee-eeCCeEEecCCCCHHHHHHHHhhC
Q 026003 14 GVFSKLTNAFCLVAIG--GSESFYSTFEAEL-ADVIPVVKTSIG-GNRIIGRLCV-GNKNGLLLPHTTTDQELQHLRNSL 88 (245)
Q Consensus 14 Gv~~~~t~~~~lvp~~--~~~~~~~~i~e~L-~~~v~vv~t~I~-gs~lvG~l~~-GN~nGllvp~~~~d~El~~l~~~l 88 (245)
|=+..+.+. .++..+ .+++-.+.+++.| + .+|+...+. ---|=..|+. +.+.-++-|+....+.++.|++..
T Consensus 152 GDvl~~g~~-v~vG~s~RTn~~gi~~l~~~l~~--~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~ 228 (308)
T 3i4a_A 152 GDVLFTGRE-FFVGLSKRTNQRGAEILADTFKD--YAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMS 228 (308)
T ss_dssp GGEEECSSC-EEEEESSSCCHHHHHHHHHHTTT--SCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTC
T ss_pred ceEEEECCE-EEEEEchhcCHHHHHHHHHHcCC--CeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhc
Confidence 445555444 666544 5677889999999 6 666665543 3344455666 444444446666677888898743
Q ss_pred CCCeEEEEecCCCCceeeEEEee--C--ceEEEe-cCCChhHHHHHHhhhCCceEEEee
Q 026003 89 PDQVVVQRIEERLSALGNCIACN--D--HVALAH-TDLDRETEEIIADVLGVEVFRQTI 142 (245)
Q Consensus 89 ~~~v~v~~l~~~~~aiGn~i~~N--D--~~alV~-p~l~~~~~~~I~d~LgVeV~~~tI 142 (245)
..+.++-.+++. ..+|++.+| + ++.+++ +.-.+...+.+++.-|.+++...+
T Consensus 229 ~~~~~iI~vpe~--~a~N~L~ln~~~~~~vvi~~~~~~~p~~~~~l~~l~g~~vi~vd~ 285 (308)
T 3i4a_A 229 DHRYDKLTVPDD--IAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSM 285 (308)
T ss_dssp SSCCEEEEESSG--GGGCCEEEEETTTEEEEEEECTTTCHHHHHHHHHCTTEEEEEECC
T ss_pred cCCCEEEECChH--HhCCEEEEccCCCCCEEEecCcccCcccHHHHHhcCCCEEEEecH
Confidence 335566556553 667888887 2 344443 334455666665432777776544
No 11
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=47.22 E-value=1.5e+02 Score=26.16 Aligned_cols=137 Identities=12% Similarity=0.149 Sum_probs=84.8
Q ss_pred CeEEecCCCC---HHHHHHHHhhCC-CCeEEEEecC---CCCceeeEEEeeCceEE-EecCCChhHHHHHHhhh-CCceE
Q 026003 68 NGLLLPHTTT---DQELQHLRNSLP-DQVVVQRIEE---RLSALGNCIACNDHVAL-AHTDLDRETEEIIADVL-GVEVF 138 (245)
Q Consensus 68 nGllvp~~~~---d~El~~l~~~l~-~~v~v~~l~~---~~~aiGn~i~~ND~~al-V~p~l~~~~~~~I~d~L-gVeV~ 138 (245)
+|+++.++.. ..|...++..+. .+.++..+++ .... |.++..++++.+ ++.-.+++.++.+++.| +.+|+
T Consensus 109 ~~vii~~m~~~~Rr~E~~~~~~~l~~~g~~i~~~~~~~~~lEG-GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~~~Vv 187 (308)
T 3i4a_A 109 ETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDG-GDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVS 187 (308)
T ss_dssp TEEEECCCSSGGGGGGHHHHHHHHHTTTCEEEECCCTTCCCCG-GGEEECSSCEEEEESSSCCHHHHHHHHHHTTTSCEE
T ss_pred CEEEEeCCCchhhhhhHHHHHHHHHHCCCeEEEccCCCCcCcc-ceEEEECCEEEEEEchhcCHHHHHHHHHHcCCCeEE
Confidence 4777777643 345555555443 2567766643 3444 999999887433 35556788899999999 87777
Q ss_pred EEee-cCceeeeeEEEEcCCeeeeCCCCC-HHHHHHHhhh--cCcceeEEeeccCccceeeEEEEc--Cc-eEEEcCC
Q 026003 139 RQTI-AGNILVGSYCSFSNRGGLVHPHTS-IEDLDELSTL--LQVPLVAGTVNRGSEVIGAGLTVN--DW-TAFCGSD 209 (245)
Q Consensus 139 ~~tI-ag~~lVGs~~v~Nn~G~LV~p~~~-~~El~~l~~~--l~V~v~~gTvN~G~~~VGsgivaN--d~-Galvg~~ 209 (245)
...+ +-..|=..++....+-++++|+.. ++.++.+++. .+-++..-+- .+-+|.+.+| ++ ++++.+.
T Consensus 188 ~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~~~~~iI~vpe----~~a~N~L~ln~~~~~~vvi~~~ 261 (308)
T 3i4a_A 188 TVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPD----DIAANCIYLNIPNKGHVLLHRT 261 (308)
T ss_dssp EEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCSSCCEEEEESS----GGGGCCEEEEETTTEEEEEEEC
T ss_pred EEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhccCCCEEEECCh----HHhCCEEEEccCCCCCEEEecC
Confidence 6554 345566778887888888887643 4456777653 1333322221 2344556666 32 6888753
No 12
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.13 E-value=55 Score=24.17 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=38.1
Q ss_pred EEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcceeE-Eeecc
Q 026003 116 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 188 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v~~-gTvN~ 188 (245)
|..|-++++....+++. |-.-+.|+|.++..|++ .++.+|+|+|.. -|+|.
T Consensus 7 Ik~P~iTEKa~~~~e~~----------------------n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~ 59 (86)
T 3j21_T 7 IIRPVVTEKAISLIEKE----------------------NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLIT 59 (86)
T ss_dssp EEECCCSHHHHHHHHTS----------------------CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEc
Confidence 66788888887777653 34458899999999998 678889999733 34443
No 13
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.68 E-value=54 Score=24.17 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=37.0
Q ss_pred EEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCccee-EEeecc
Q 026003 116 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV-AGTVNR 188 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v~-~gTvN~ 188 (245)
|..|-+++++...+++. |-.-+.|+|.++..|++ .++++++|+|. .-|+|.
T Consensus 6 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~ 58 (85)
T 1vq8_S 6 IKHPHVTEKAMNDMDFQ----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNT 58 (85)
T ss_dssp EEEECCSHHHHHHHHHS----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred eeccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeec
Confidence 56778888887777632 22458999999999998 67788999973 344443
No 14
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=35.54 E-value=55 Score=23.55 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=56.8
Q ss_pred EEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEE
Q 026003 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ 140 (245)
Q Consensus 61 ~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~ 140 (245)
.+.+|| +|..+++++|..+-...+.-..+....++.+ --+|+|.-.-.++..+.++..=|..
T Consensus 10 ~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~---- 71 (115)
T 3lqv_A 10 ILYIRN-----LPYKITAEEMYDIFGKYGPIRQIRVGNTPET---------RGTAYVVYEDIFDAKNAVDHLSGFN---- 71 (115)
T ss_dssp EEEEES-----CCTTCCHHHHHHHHHTTSCEEEEEEECSTTT---------TTCEEEEESSHHHHHHHHHHHTTCB----
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---------CcEEEEEECCHHHHHHHHHHcCCCE----
Confidence 345666 7999999999877655332234444433322 2478888887777777777654443
Q ss_pred eecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcc
Q 026003 141 TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180 (245)
Q Consensus 141 tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~ 180 (245)
+.|..+.=.++--...--=.++..++++++++.+-+|++
T Consensus 72 -~~g~~l~v~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 72 -VSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp -SSSCBCEEEECCHHHHTTTSCHHHHHHHHHHHHHHHCCC
T ss_pred -ECCeEEEEEEecCChhhhhhhHhHhHHHHHHHHHHhCCC
Confidence 234333222221111111124455677777777777765
No 15
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.82 E-value=1.2e+02 Score=22.00 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=36.8
Q ss_pred EEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHh
Q 026003 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 131 (245)
Q Consensus 61 ~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d 131 (245)
.+.+|| +|..+++++|+.+-+....-.+|..+.. -.+|+|.-+-.++..+.++.
T Consensus 17 ~l~V~n-----Lp~~~te~~L~~~F~~fG~V~~v~i~~~------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 17 VVHVRG-----LCESVVEADLVEALEKFGTICYVMMMPF------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp EEEEES-----CCSSCCHHHHHHHHTTTSCEEEEEEETT------------TTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEECC------------CCEEEEEECCHHHHHHHHHH
Confidence 356666 7999999999987655332234444432 24799988877778888774
No 16
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=32.81 E-value=2.3e+02 Score=26.18 Aligned_cols=118 Identities=8% Similarity=0.027 Sum_probs=72.9
Q ss_pred CcEEEEeCC--CChhHHHHHHHHhcCCccEEEEEecC---ceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEE
Q 026003 21 NAFCLVAIG--GSESFYSTFEAELADVIPVVKTSIGG---NRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95 (245)
Q Consensus 21 ~~~~lvp~~--~~~~~~~~i~e~L~~~v~vv~t~I~g---s~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~ 95 (245)
++.+++..+ .+++-++.+++.|++..+|+-....+ .-+=..++.-..+-+++-....++.++.|++. +.++-
T Consensus 262 G~~llvg~s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~---~~~iI 338 (423)
T 1jdw_A 262 GRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA---GWTII 338 (423)
T ss_dssp TTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT---TCEEE
T ss_pred CCEEEEEecccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC---CCEEE
Confidence 445666544 35666788999994225666665543 22223444444555555544545677788764 45665
Q ss_pred EecCCCCc------------eeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec
Q 026003 96 RIEERLSA------------LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIA 143 (245)
Q Consensus 96 ~l~~~~~a------------iGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa 143 (245)
.++..... -.|++..|....|++. -.+.+.+.+++. |.+|+...+.
T Consensus 339 ~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI~~~-~~~~~~~~L~~~-G~~Vi~v~~~ 396 (423)
T 1jdw_A 339 TPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDA-NEVPIQKMFEKL-GITTIKVNIR 396 (423)
T ss_dssp CCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEET-TCHHHHHHHHHT-TCEEEEECCH
T ss_pred ECCCchhccccccccccccceeeEEEECCCEEEEeC-CCHHHHHHHHHC-CCEEEEecHH
Confidence 55543222 5789989866666655 568888999887 9998886543
No 17
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=32.01 E-value=66 Score=24.05 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=33.8
Q ss_pred EEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcce
Q 026003 116 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPL 181 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v 181 (245)
|..|-+++++...+++. |-.-+.|+|.++..|++ .++.+|+|+|
T Consensus 11 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~eIK~AVE~lf~VkV 55 (93)
T 3r8s_T 11 LRAPHVSEKASTAMEKS----------------------NTIVLKVAKDATKAEIKAAVQKLFEVEV 55 (93)
T ss_dssp EEEECCSHHHHHHHHTT----------------------SEEEEEECSSCCHHHHHHHHHHHSCCCC
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHcCCce
Confidence 56677777777766652 33458899999999998 6788999997
No 18
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=31.79 E-value=1.3e+02 Score=25.34 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=65.4
Q ss_pred EEEeCC--CChhHHHHHHHHh---cCCccEEEEEecC-ceEEeEEeeeeCCeEE-ecCCCCHHHHHHHHhhCCCCeEEEE
Q 026003 24 CLVAIG--GSESFYSTFEAEL---ADVIPVVKTSIGG-NRIIGRLCVGNKNGLL-LPHTTTDQELQHLRNSLPDQVVVQR 96 (245)
Q Consensus 24 ~lvp~~--~~~~~~~~i~e~L---~~~v~vv~t~I~g-s~lvG~l~~GN~nGll-vp~~~~d~El~~l~~~l~~~v~v~~ 96 (245)
.++..+ .+++-.+.+++.| + .+++...+.+ .-+=..++.-..+-++ .|....+.+ ++ +.++-.
T Consensus 126 ~~vg~s~Rt~~~~~~~l~~~l~~~g--~~vi~~~~~~~~HlD~~~~~v~~~~~~~~~~~~~~~~---~~-----~~~ii~ 195 (255)
T 1h70_A 126 FYIGESARTNAEGARQMIAILEKHG--LSGSVVRLEKVLHLKTGLAYLEHNNLLAAGEFVSKPE---FQ-----DFNIIE 195 (255)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHTT--CEEEEEECSSSSSGGGSEEECSTTEEEECGGGTTCGG---GT-----TSEEEE
T ss_pred EEEEEccCCcHHHHHHHHHHHhhCC--CEEEEEECCCCcchhheeeecCCCEEEEECCcCCHhH---hC-----ceEEEE
Confidence 444333 4667789999999 7 7777776653 2223344533344344 444433332 22 356766
Q ss_pred ecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec
Q 026003 97 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIA 143 (245)
Q Consensus 97 l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa 143 (245)
++..-..-.|++..| . .++-|...+.+.+.+++. |.+|+...+.
T Consensus 196 ~~~~e~~~~N~l~i~-~-~Vi~~~~~~~~~~~l~~~-g~~vi~v~~~ 239 (255)
T 1h70_A 196 IPEEESYAANCIWVN-E-RVIMPAGYPRTREKIARL-GYRVIEVDTS 239 (255)
T ss_dssp CCGGGGGGGCCEEET-T-EEEEESSCHHHHHHHHTT-TCEEEEECCH
T ss_pred CCCcccccccEEEEC-C-EEEeCCCCHHHHHHHHHC-CCeEEEechH
Confidence 664334667888888 4 444555678888888876 9998886543
No 19
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.72 E-value=93 Score=25.57 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=41.1
Q ss_pred eEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCccee-EEeecc
Q 026003 114 VALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV-AGTVNR 188 (245)
Q Consensus 114 ~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v~-~gTvN~ 188 (245)
-.|..|-++++....+++. |-.-+.|++.++..|++ .++++|+|.|. .-|+|.
T Consensus 75 ~iIk~PliTEKa~~~~E~~----------------------n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~ 129 (156)
T 2zkr_s 75 AIIKFPLTTESAMKKIEDN----------------------NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIR 129 (156)
T ss_dssp -CEEEECCSHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred HhHhcccccHHHHHHHHhC----------------------CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEc
Confidence 3677899999999999883 33568999999999987 67889999973 344443
No 20
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=29.57 E-value=1.2e+02 Score=21.99 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=41.2
Q ss_pred EeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCC
Q 026003 62 LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 135 (245)
Q Consensus 62 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgV 135 (245)
+.+|| ||..+++++|+.+=...+.-..|.++.++...- -+|+|.-.-.++..+.|+..=|.
T Consensus 8 lfV~n-----Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~k--------g~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 8 IFIKN-----LDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--------GYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp EEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEE--------EEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEECC-----CCCCCCHHHHHHHHhccCCEEEEEEeecCCCCC--------ceEEEEECCHHHHHHHHHHcCCC
Confidence 45555 699999999998876644334555554443221 37999998888888888765444
No 21
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=28.08 E-value=48 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.6
Q ss_pred cCCeeeeCCCCCHHHHH-HHhhhcCccee-EEeec
Q 026003 155 SNRGGLVHPHTSIEDLD-ELSTLLQVPLV-AGTVN 187 (245)
Q Consensus 155 Nn~G~LV~p~~~~~El~-~l~~~l~V~v~-~gTvN 187 (245)
|+.-+.|+|.++..|++ .++.+|+|+|. .-|+|
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~ 57 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMN 57 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEE
Confidence 45678999999999998 67788999973 34443
No 22
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.79 E-value=1.2e+02 Score=21.70 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=32.7
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhh
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 132 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~ 132 (245)
||..+++++|+.+-.....-..+.++.+ -+|+|--.-.++..+.|+..
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~-------------g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD-------------GTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT-------------TEEEEEESSHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC-------------CEEEEEECCHHHHHHHHHHH
Confidence 6889999999877655332233333332 68899888777777777753
No 23
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.24 E-value=1.4e+02 Score=20.28 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=32.3
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhh
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 132 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~ 132 (245)
+|..+++++|+.+-+....-..+..... +|+|.-.-.++..+.++..
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~~--------------~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVKD--------------YAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECSS--------------EEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEECC--------------EEEEEECCHHHHHHHHHHh
Confidence 5889999999877665433244444421 8999888777777777654
No 24
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=26.82 E-value=74 Score=29.37 Aligned_cols=173 Identities=13% Similarity=0.068 Sum_probs=92.7
Q ss_pred eeeEEeecCcEEEEeCCCChhHHHHHHHHh--cCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCC
Q 026003 13 VGVFSKLTNAFCLVAIGGSESFYSTFEAEL--ADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD 90 (245)
Q Consensus 13 IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L--~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~ 90 (245)
|+|+.+|.-. ++.-|+ +.+.+.+++.+ + +||+...-.| +.|++..| .+.=++.|-+.+..
T Consensus 119 I~V~tTC~~e--~IGdDi-~~v~~~~~~~~~~~--~pVi~v~t~g--f~g~~~~G-----------~~~a~~al~~~~~~ 180 (437)
T 3aek_A 119 LFLVGSCPSE--VLKLDL-DRAAERLSGLHAPH--VRVYSYTGSG--LDTTFTQG-----------EDTCLAAMVPTLDT 180 (437)
T ss_dssp EEEEECHHHH--HTTCCH-HHHHHHHHHHSTTT--CEEEEEECCT--TTCCTTHH-----------HHHHHHHHGGGSCB
T ss_pred EEEEcCCHHH--HhhcCH-HHHHHHHHHhcCCC--CeEEEeECCC--CCCcHHHH-----------HHHHHHHHHHHhcc
Confidence 4555554332 333333 45567777777 6 8888886554 23433333 23334444444321
Q ss_pred CeEEEEecCCCCceeeEEEeeCceEEEecCCCh---hHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe-eeeCCCCC
Q 026003 91 QVVVQRIEERLSALGNCIACNDHVALAHTDLDR---ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTS 166 (245)
Q Consensus 91 ~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~---~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-~LV~p~~~ 166 (245)
. .+.++-|+++ +.. ..++.+=+-+|+++....=++ ++==.-.+.+..- ++++|..
T Consensus 181 ~------------------~~~~VNilG~-~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~~A~~niv~~~~~- 239 (437)
T 3aek_A 181 T------------------EAAELIVVGA-LPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVGPNTRFILAQPFL- 239 (437)
T ss_dssp C------------------CCCCEEEESC-CCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBCTTCEEEESSTTC-
T ss_pred c------------------CCCcEEEEeC-CChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhhcCcEEEEECccH-
Confidence 1 0233444433 232 345555567889987533222 2211122233333 4566766
Q ss_pred HHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHhhhh
Q 026003 167 IEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 243 (245)
Q Consensus 167 ~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~ 243 (245)
..-.+.| +-+|+|..... .+ +|.+-|..-+..|.+.||.+....+.+.+..|+.+.+.
T Consensus 240 ~~~A~~L-e~~GiP~i~~~----~P--------------~G~~~T~~~l~~la~~~g~~~~~~e~~i~~e~~~~~~~ 297 (437)
T 3aek_A 240 GETTGAL-ERRGAKRIAAP----FP--------------FGEEGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKA 297 (437)
T ss_dssp HHHHHHH-HHTTCEECCCC----CS--------------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCeEecC----CC--------------cCHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHH
Confidence 6667788 88899974432 22 36677899999999999986621123334445555544
No 25
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=25.39 E-value=1.2e+02 Score=24.49 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=39.6
Q ss_pred EEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcceeE-Eeecc
Q 026003 115 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 188 (245)
Q Consensus 115 alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v~~-gTvN~ 188 (245)
.|..|-++++....+++. |-.-+.|++.++..|++ .++.+|+|.|.. -|+|.
T Consensus 62 IIk~PliTEKa~~~~E~~----------------------N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~ 115 (142)
T 3u5e_X 62 VIEQPITSETAMKKVEDG----------------------NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVR 115 (142)
T ss_dssp HEEEECCCHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEEC
T ss_pred hhhcCCcCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEc
Confidence 367899999998888873 33348899999999987 678899999732 34433
No 26
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=25.22 E-value=1.8e+02 Score=26.93 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=61.9
Q ss_pred HHHHHHHhhCCCCeEEEEecCCCCc---eeeEEEeeCc----------eEEE----------------ecCCChhHHHHH
Q 026003 79 QELQHLRNSLPDQVVVQRIEERLSA---LGNCIACNDH----------VALA----------------HTDLDRETEEII 129 (245)
Q Consensus 79 ~El~~l~~~l~~~v~v~~l~~~~~a---iGn~i~~ND~----------~alV----------------~p~l~~~~~~~I 129 (245)
++.+..++.|+.++.+..++...+= .|=..+.|++ .+.+ +-+.+...-+.|
T Consensus 67 ~~~~~a~~~l~~~v~~~~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~v 146 (383)
T 3h7c_X 67 AQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKI 146 (383)
T ss_dssp GGHHHHHHHSCTTSEEEECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHHH
Confidence 4556677777777888777755432 2444444443 2333 335667778889
Q ss_pred HhhhCCceEEEeecCceeeeeEEEEcCCe-------eee----CCCCCHHHHH-HHhhhcCcc
Q 026003 130 ADVLGVEVFRQTIAGNILVGSYCSFSNRG-------GLV----HPHTSIEDLD-ELSTLLQVP 180 (245)
Q Consensus 130 ~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------~LV----~p~~~~~El~-~l~~~l~V~ 180 (245)
.+.++++.++..+- +=|=..-.|-.| ||+ +|..|.+|++ +|++.||+.
T Consensus 147 ~~~~g~~~~~~~lV---lEGGsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~ 206 (383)
T 3h7c_X 147 LALERIPRFQHSMI---LEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQ 206 (383)
T ss_dssp HHHHTCCEEEEEEE---CCGGGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHhCCCcccCCee---ecCCcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCc
Confidence 99999998875421 111111223344 555 5889999998 499999997
No 27
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=23.52 E-value=1.4e+02 Score=26.70 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=61.8
Q ss_pred cCCCCHHHHHHHHhhCCCCeEEEEecCCCC--ce-eeEEEeeCceEEEecCCChhHHHHHHhhh-CCceEEEeecCce--
Q 026003 73 PHTTTDQELQHLRNSLPDQVVVQRIEERLS--AL-GNCIACNDHVALAHTDLDRETEEIIADVL-GVEVFRQTIAGNI-- 146 (245)
Q Consensus 73 p~~~~d~El~~l~~~l~~~v~v~~l~~~~~--ai-Gn~i~~ND~~alV~p~l~~~~~~~I~d~L-gVeV~~~tIag~~-- 146 (245)
+..++.+.++.|++.|+.+..+..++...+ =+ ..+..+.+..++++|+..+.. .+.+.| +.+++... ....
T Consensus 195 s~Rt~~~~ie~l~~~l~~~~~v~~~~~~~~~~HlDt~~~~v~~~~vl~~~~~~~~~--~~~~~L~~~~iI~~~-~~~~~~ 271 (348)
T 1bwd_A 195 SDSGNELGAKWLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNPSRVNDE--NMPDFLRSWENITCP-ELVDIG 271 (348)
T ss_dssp BTTBCHHHHHHHHHHHCTTSEEEEESSSCCSSCGGGTEEEEETTEEEECTTTCCTT--TSCGGGTTSEEEECC-CCCCCC
T ss_pred cccCCHHHHHHHHHHhcCCcEEEEecCCCCCcchhheEEecCCCEEEEeCCCCCcH--HHHHHhcCCEEEECC-Cccccc
Confidence 466789999999999865666666664311 11 256677788888888764331 122333 45666654 1110
Q ss_pred ----------eeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcce
Q 026003 147 ----------LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPL 181 (245)
Q Consensus 147 ----------lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v 181 (245)
.-|+-+..=++|.++.|....+-.+.|++. |.++
T Consensus 272 ~~~~~~~~~~w~~~N~l~i~~~~Vi~~~~~~~~~~~L~~~-G~~v 315 (348)
T 1bwd_A 272 FTGDKPHCSVWIGMNLLVVRPDLAVVDRRQTALIRLLEKH-GMNV 315 (348)
T ss_dssp CCSSSCSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEE
T ss_pred cccccccccccceeeEEEEcCCEEEEcCCCHHHHHHHHHC-CCEE
Confidence 114444422334555555677778888876 7665
No 28
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.42 E-value=1.9e+02 Score=21.94 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=34.4
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHh
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 131 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d 131 (245)
||..++++||+.+-.....-.+|..+.+| .+|+|--+-.+++.+.|+.
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~k------------G~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKGK------------NQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGGG------------TEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCCC------------CEEEEEECCHHHHHHHHHH
Confidence 68899999999876554333556555432 4799988887888788764
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.37 E-value=1.4e+02 Score=22.16 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=35.6
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhh
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 133 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~L 133 (245)
||..+++++|+.+-+..+.-.+|.++.+| -+|+|--+-.++..+.|+..-
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~~v~i~~~k------------GfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVTNLLMLKGK------------NQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEEEEEEETTT------------TEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcCC------------CEEEEEECCHHHHHHHHHHhc
Confidence 68999999999875543333455555432 489998888888888887543
No 30
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=21.98 E-value=3.4e+02 Score=22.40 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=59.9
Q ss_pred eEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEE
Q 026003 60 GRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFR 139 (245)
Q Consensus 60 G~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~ 139 (245)
-.+.+|| +|..+++++|+.+-+....-..|..+.++.. +-.+|+|.-.-.+++.+.++ |+=.
T Consensus 42 ~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--------~~g~afV~f~~~~~A~~A~~--~~~~--- 103 (292)
T 2ghp_A 42 TTVLVKN-----LPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--------NFRFARIEFARYDGALAAIT--KTHK--- 103 (292)
T ss_dssp CEEEEEE-----ECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--------SSEEEEEEESSHHHHHHHHT--TTTC---
T ss_pred CEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--------CcEEEEEEECCHHHHHHHHH--hCCc---
Confidence 3456666 7999999999987765433344555544432 23678888887777777773 3211
Q ss_pred EeecCceeeeeEEEEcCCeee---eCCCCCHHHHHHHhhhcCcce
Q 026003 140 QTIAGNILVGSYCSFSNRGGL---VHPHTSIEDLDELSTLLQVPL 181 (245)
Q Consensus 140 ~tIag~~lVGs~~v~Nn~G~L---V~p~~~~~El~~l~~~l~V~v 181 (245)
.+.|.++-=.. .+++-+. +++.+++++|..+-.-+|.++
T Consensus 104 -~~~g~~i~v~~--~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i 145 (292)
T 2ghp_A 104 -VVGQNEIIVSH--LTECTLWMTNFPPSYTQRNIRDLLQDINVVA 145 (292)
T ss_dssp -EETTEECEEEE--CCSCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred -EeCCcEEEEEE--CCCCEEEEECCCCCCCHHHHHHHHHHhCCCe
Confidence 12222211000 0111111 588999999998887777444
No 31
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=21.12 E-value=1.1e+02 Score=28.98 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=45.0
Q ss_pred eeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHH
Q 026003 159 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRK 238 (245)
Q Consensus 159 ~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~~~~~~~~~~~~~ 238 (245)
++++|.....-.+.|++-+|+|..... .| +|.+-|..-+..|.++||.+. +..+ ...|+
T Consensus 287 iv~~~~~~~~~A~~Le~r~GiP~i~~~----~P--------------iG~~~T~~~L~~la~~~g~~~--~~~i-~~er~ 345 (519)
T 1qgu_B 287 LLLQPWQLLKSKKVVQEMWNQPATEVA----IP--------------LGLAATDELLMTVSQLSGKPI--ADAL-TLERG 345 (519)
T ss_dssp EESSTTTCHHHHHHHHHTSCCCCCCCC----CC--------------BSHHHHHHHHHHHHHHHCCCC--CHHH-HHHHH
T ss_pred EEECHHHHHHHHHHHHHHcCCCeEecC----CC--------------cchHHHHHHHHHHHHHHCCCc--HHHH-HHHHH
Confidence 667888888878999999999984332 22 366779999999999999864 2223 44444
Q ss_pred Hhhhh
Q 026003 239 SLIDS 243 (245)
Q Consensus 239 ~~~~~ 243 (245)
.++|.
T Consensus 346 ~~~~~ 350 (519)
T 1qgu_B 346 RLVDM 350 (519)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 32
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=20.59 E-value=2e+02 Score=19.44 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=31.3
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhh
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 132 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~ 132 (245)
+|..+++++|+.+-+.. .-..+.+ + -+--+|+|.-.-.++..+.++..
T Consensus 13 Lp~~~t~~~l~~~F~~~-~v~~~~i-~-----------~~~g~afV~f~~~~~a~~Ai~~l 60 (88)
T 1wg1_A 13 LPQDSNCQEVHDLLKDY-DLKYCYV-D-----------RNKRTAFVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp CCSSCCHHHHHHHTCSS-CCCCEEE-E-----------GGGTEEEECCSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhC-CeEEEEE-e-----------CCCcEEEEEECCHHHHHHHHHHh
Confidence 58999999998776543 2222322 1 33458888888777777777744
No 33
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=20.42 E-value=2.1e+02 Score=21.10 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=36.9
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCc
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE 136 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVe 136 (245)
+|..++++||+.+-...+.-.++..+..| .+|+|--+-.+++.+.|+..=+.+
T Consensus 29 Lp~~~te~~L~~lF~~fG~V~~v~i~~~k------------g~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 29 LIDGVVEADLVEALQEFGPISYVVVMPKK------------RQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEETTT------------TEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEcCC------------CEEEEEECCHHHHHHHHHHhcCCC
Confidence 68899999999886554322445555433 489998888788888887654444
No 34
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=20.05 E-value=1.8e+02 Score=21.08 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=33.6
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg 134 (245)
||..+++++|+.+-.....-..+.++.. -+|+|--.-.+++.++|+..=|
T Consensus 24 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~-------------g~afV~f~~~~~a~~Ai~~l~g 73 (115)
T 3beg_B 24 LPPSGSWQDLKDHMREAGDVCYADVYRD-------------GTGVVEFVRKEDMTYAVRKLDN 73 (115)
T ss_dssp CCSSCCTTHHHHHHGGGSCEEEEEECTT-------------SEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecC-------------CEEEEEECCHHHHHHHHHHhCC
Confidence 5889999999887655332233333322 6888888887888888875433
Done!