Query 026003
Match_columns 245
No_of_seqs 173 out of 458
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 03:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026003.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026003hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g62a_ d.126.1.1 (A:) Ribosom 100.0 3.8E-82 2.8E-86 555.5 18.0 224 1-224 1-224 (224)
2 d1g61a_ d.126.1.1 (A:) Ribosom 100.0 5E-80 3.6E-84 542.3 14.4 221 1-224 1-225 (225)
3 d1g62a_ d.126.1.1 (A:) Ribosom 100.0 4.5E-29 3.2E-33 217.8 9.9 128 99-226 8-137 (224)
4 d1g61a_ d.126.1.1 (A:) Ribosom 99.9 5E-29 3.6E-33 217.6 7.8 125 99-225 8-180 (225)
5 d1dxea_ c.1.12.5 (A:) 2-dehydr 44.0 3.3 0.00024 34.2 1.0 93 45-137 67-166 (253)
6 d1vqos1 d.12.1.1 (S:1-81) Ribo 40.3 25 0.0018 24.0 5.2 46 116-183 5-51 (81)
7 d2d9ra1 b.129.2.1 (A:20-104) H 30.9 61 0.0044 22.0 6.1 65 23-97 19-83 (85)
8 d2cpja1 d.58.7.1 (A:65-150) No 30.3 66 0.0048 20.8 7.9 57 62-135 11-67 (86)
9 d1whya_ d.58.7.1 (A:) Putative 29.3 61 0.0045 21.4 5.9 53 72-136 25-77 (97)
10 d2cq1a1 d.58.7.1 (A:51-138) Po 27.9 71 0.0051 20.5 5.9 55 62-133 11-65 (88)
11 d1cvja1 d.58.7.1 (A:11-90) Pol 27.8 68 0.005 20.2 6.0 60 61-131 2-61 (80)
12 d2adca2 d.58.7.1 (A:444-531) P 26.3 76 0.0055 20.3 6.5 61 62-137 13-73 (88)
13 d1cvja2 d.58.7.1 (A:91-179) Po 24.4 46 0.0033 21.7 4.3 58 61-131 10-67 (89)
14 d2adba1 d.58.7.1 (A:177-284) P 23.4 68 0.005 21.5 5.3 68 55-137 3-70 (108)
15 d2cqha1 d.58.7.1 (A:2-81) IGF- 22.8 44 0.0032 21.4 3.9 56 62-134 4-59 (80)
16 d2cq3a1 d.58.7.1 (A:110-202) R 22.4 97 0.0071 20.1 6.7 56 72-135 19-74 (93)
17 d1kjqa3 d.142.1.2 (A:113-318) 22.3 55 0.004 23.6 4.8 45 131-197 11-55 (206)
18 d1wg1a_ d.58.7.1 (A:) Probable 21.8 28 0.002 23.0 2.7 49 161-222 13-61 (88)
19 d2ghpa2 d.58.7.1 (A:41-115) U4 20.3 98 0.0071 19.4 5.4 51 72-130 8-58 (75)
20 d2cqia1 d.58.7.1 (A:1-90) Nucl 20.3 98 0.0071 19.9 5.4 60 62-134 11-70 (90)
21 d2pjua1 c.92.3.1 (A:11-196) Pr 20.1 12 0.00085 29.3 0.3 62 125-187 61-126 (186)
No 1
>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=3.8e-82 Score=555.46 Aligned_cols=224 Identities=75% Similarity=1.156 Sum_probs=222.7
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+++|+.++|+++|+|+||++||+|++||+||+|||++++|+|
T Consensus 1 M~~r~~f~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~E 80 (224)
T d1g62a_ 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE 80 (224)
T ss_dssp CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 026003 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||+++|++++|+++++|+||+||+|+|||++|+|||+++++++|.|+|+|||||+|++|||.++|||++++||+|+|
T Consensus 81 l~~L~~~l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~tiag~~~VGs~~v~tn~G~L 160 (224)
T d1g62a_ 81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL 160 (224)
T ss_dssp HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred HHHHHhhCCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEEecCccceeeEEEEcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v 224 (245)
+||+++++|+++|+++|+||+..||||+|+++||+|++|||||++||.+||++||.|||++|++
T Consensus 161 vhP~~t~~E~~~l~~~l~V~~~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~~~~l 224 (224)
T d1g62a_ 161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224 (224)
T ss_dssp ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHhCCCcccceeeCCCCCceeEEEEcCceEEEcCCCCcHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 2
>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=5e-80 Score=542.31 Aligned_cols=221 Identities=35% Similarity=0.494 Sum_probs=216.7
Q ss_pred CceeeeeeCCCceeeEEeecCcEEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHH
Q 026003 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGv~~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|+|+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 1 Mi~r~~~~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~--v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E 78 (225)
T d1g61a_ 1 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE 78 (225)
T ss_dssp CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCC---CeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCC
Q 026003 81 LQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNR 157 (245)
Q Consensus 81 l~~l~~~l~~---~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~ 157 (245)
+++||++||+ +++|+++++|+||+||+|+|||++|+|||++ +++.|.|+|+|||||+|++|||..+|||++++||+
T Consensus 79 l~~l~~~l~~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l-~e~~e~I~dvL~Vev~r~~iag~~~VGs~~v~tn~ 157 (225)
T d1g61a_ 79 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK 157 (225)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred HHHHHhhcccccCCceEEEeCCcccccccEEEEcCcceEecccc-chHHHHHHHhhCceEEEEEeCCcccceeEEEEecc
Confidence 9999999975 5999999999999999999999999999999 57899999999999999999999999999999999
Q ss_pred eeeeCCCCCHHHHHHHhhhcCcc-eeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 026003 158 GGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 158 G~LV~p~~~~~El~~l~~~l~V~-v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v 224 (245)
|+||||+++++|+++|+++|+|| +..||||+|+++||+|++||||||+||.+||++||.|||++||+
T Consensus 158 G~LvhP~~s~~E~~~l~~~l~V~~v~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~a~~l 225 (225)
T d1g61a_ 158 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 225 (225)
T ss_dssp EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred ceEECCCCCHHHHHHHHHHhCCCcccccceeCCCCCceeEEEEcCceEEEcCCCchHHHHHHHHHhCC
Confidence 99999999999999999999999 57899999999999999999999999999999999999999985
No 3
>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.95 E-value=4.5e-29 Score=217.80 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=123.9
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 026003 99 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 176 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~ 176 (245)
++++++|+|+.+||+||++||+.+++..+.+++.|+ +|+++++|+|++++|+++++|+||+|||..++|+|+++|++.
T Consensus 8 ~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~ 87 (224)
T d1g62a_ 8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS 87 (224)
T ss_dssp TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhh
Confidence 689999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 026003 177 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 177 l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l~v~~ 226 (245)
++-.+....+..+.+++|+.|+|||+||+|||+.+.+..+.|+|+||++.
T Consensus 88 l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev 137 (224)
T d1g62a_ 88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV 137 (224)
T ss_dssp SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred CCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceE
Confidence 96666669999999999999999999999999999999999999999986
No 4
>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.95 E-value=5e-29 Score=217.62 Aligned_cols=125 Identities=21% Similarity=0.360 Sum_probs=116.0
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe--------------------
Q 026003 99 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------------------- 158 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------------------- 158 (245)
++.+++|+|+.+||++|++||+++++..+.|+++|++|+++++|+|+++||+++++|+||
T Consensus 8 ~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~ 87 (225)
T d1g61a_ 8 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK 87 (225)
T ss_dssp TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcc
Confidence 689999999999999999999999999999999999999999999999999999998888
Q ss_pred ----------------------------eeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCC
Q 026003 159 ----------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 210 (245)
Q Consensus 159 ----------------------------~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~t 210 (245)
++|||+.+ ++.+.|+|+|||++.++++ +|...|||..++|++|++|||++
T Consensus 88 ~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~-e~~e~I~dvL~Vev~r~~i-ag~~~VGs~~v~tn~G~LvhP~~ 165 (225)
T d1g61a_ 88 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDSLNVEVEIGTI-AELPTVGSNAVVTNKGCLTHPLV 165 (225)
T ss_dssp HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGG-GGHHHHHHHHCSEEEECCB-TTBSCTTTSEEECSSEEEECTTC
T ss_pred cccCCceEEEeCCcccccccEEEEcCcceEeccccc-hHHHHHHHhhCceEEEEEe-CCcccceeEEEEeccceEECCCC
Confidence 56666663 3455667889999999998 99999999999999999999999
Q ss_pred CHHHHHHHHHhhCCc
Q 026003 211 TATELSVIESVFKLR 225 (245)
Q Consensus 211 t~~El~~Ie~~l~v~ 225 (245)
|.+|++.|+++|+++
T Consensus 166 s~~E~~~l~~~l~V~ 180 (225)
T d1g61a_ 166 EDDELEFLKSLFKVE 180 (225)
T ss_dssp CHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999999998
No 5
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=44.01 E-value=3.3 Score=34.15 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=66.2
Q ss_pred CccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhC---CCCeEE-E--EecCCC-CceeeEEEeeCceEEE
Q 026003 45 VIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL---PDQVVV-Q--RIEERL-SALGNCIACNDHVALA 117 (245)
Q Consensus 45 ~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l---~~~v~v-~--~l~~~~-~aiGn~i~~ND~~alV 117 (245)
-.++||..-....++...+=..-.|+++|..-+.+|.+.+.+.. |.|..- . +-.... +.--.+-.+|++..++
T Consensus 67 ~~~~VRvp~~~~~~i~~~LD~Ga~GIivP~v~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi 146 (253)
T d1dxea_ 67 SAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITIL 146 (253)
T ss_dssp SEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEE
T ss_pred CCceecCCCCCHHHHHHHHhcCccEEEecccCCHHHHHHHHHhheeCCCCCcCcCcceeccccccccccccccccceEEE
Confidence 35688888888888888888899999999999999999998875 333110 0 000000 0011122368888888
Q ss_pred ecCCChhHHHHHHhhhCCce
Q 026003 118 HTDLDRETEEIIADVLGVEV 137 (245)
Q Consensus 118 ~p~l~~~~~~~I~d~LgVeV 137 (245)
..-=+.+.++.+++.+.||=
T Consensus 147 ~~IEt~~av~nleeI~av~g 166 (253)
T d1dxea_ 147 VQIESQQGVDNVDAIAATEG 166 (253)
T ss_dssp EEECSHHHHHTHHHHHTSTT
T ss_pred eecccHHHHHHHHHHhccCC
Confidence 88888999999999998873
No 6
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=40.31 E-value=25 Score=24.02 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=35.3
Q ss_pred EEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcceeE
Q 026003 116 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLVA 183 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~-~l~~~l~V~v~~ 183 (245)
|.+|-+++++...+++- |-.-+.|+|.++..|++ .++++++|.+..
T Consensus 5 I~~P~iTEKs~~~~e~~----------------------n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~ 51 (81)
T d1vqos1 5 IKHPHVTEKAMNDMDFQ----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVEQ 51 (81)
T ss_dssp EEEECCSHHHHHHHHHS----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEE
T ss_pred eeccccCHHHHHHHHhC----------------------CEEEEEEcCcCCHHHHHHHHHHHcCCceeE
Confidence 66788888876666532 44568999999999997 678899999733
No 7
>d2d9ra1 b.129.2.1 (A:20-104) Hypothetical protein PG0164 {Porphyromonas gingivalis [TaxId: 837]}
Probab=30.93 E-value=61 Score=21.96 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=44.7
Q ss_pred EEEEeCCCChhHHHHHHHHhcCCccEEEEEecCceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEe
Q 026003 23 FCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI 97 (245)
Q Consensus 23 ~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l 97 (245)
|.-+|.++.+. ++.-.--|+.+|+|..+=+++.-..+...++| +..+=.+.+.....|.+.|..+
T Consensus 19 fv~vP~dv~~~--------~g~G~v~V~~tI~g~~~~tsl~p~g~G~~~Lp--ik~~iRk~~g~~~Gd~V~V~L~ 83 (85)
T d2d9ra1 19 YVEIPFDVKTV--------YGKGRVRVNATFDGYPYTGYIVRMGLPCHILG--LRQDIRRAIGKQPGDSVYVTLL 83 (85)
T ss_dssp EEECCSCHHHH--------HCSSCEEEEEEETTEEEEEEEEESSTTCEEEE--ECHHHHHHHTCCTTSEEEEEEE
T ss_pred EEEcCHHHHhh--------cCCCeeEEEEEECCEEEEEEEEECCCCcEEEE--ecHHHHHHcCCCCCCEEEEEEE
Confidence 66678776432 33225569999999999999998656899999 4555555555554555777654
No 8
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.25 E-value=66 Score=20.81 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=41.2
Q ss_pred EeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCC
Q 026003 62 LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 135 (245)
Q Consensus 62 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgV 135 (245)
+.+|| +|..++++||..+=+..+.-.++....++ .+|+|.-+-.++..+.++..=|.
T Consensus 11 l~V~n-----Lp~~~~~~~l~~~F~~~G~i~~i~~~~~k------------~~afV~f~~~~~A~~A~~~l~g~ 67 (86)
T d2cpja1 11 LFVGN-----LPPDITEEEMRKLFEKYGKAGEVFIHKDK------------GFGFIRLETRTLAEIAKVELDNM 67 (86)
T ss_dssp EEEES-----CCTTCCHHHHHHHTSTTCCCSEEEEETTT------------TEEEEECSSSHHHHHHHHHHTTC
T ss_pred EEEEC-----CCCCCCHHHHHHHHHHhCCceEeeeeccc------------ceEEEEECCHHHHHHHHHHhCCC
Confidence 55777 89999999999887665433455555433 48999999888888888764443
No 9
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.28 E-value=61 Score=21.37 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCc
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE 136 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVe 136 (245)
||..+++++|+.+=+....-..+.+.. +..+|+|.-.-.+++.+.++..=+.+
T Consensus 25 Lp~~~t~~~l~~~f~~~G~i~~~~~~~------------~~~~afV~f~~~~~A~~A~~~l~~~~ 77 (97)
T d1whya_ 25 LGPNTSLAALAREFDRFGSIRTIDHVK------------GDSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEECS------------SSCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCCHHHHHHHHHhhcccceEeeec------------cccEEEeccCCHHHHHHHHHHhCCCE
Confidence 588999999998865533223333333 24689999888888888887654544
No 10
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.92 E-value=71 Score=20.52 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=36.7
Q ss_pred EeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhh
Q 026003 62 LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 133 (245)
Q Consensus 62 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~L 133 (245)
+-+|| +|..+++++|..+-+....-..+.....+ .+|+|.-+-.+++...++..-
T Consensus 11 l~V~n-----Lp~~~t~~~L~~~f~~~G~i~~v~~~~~~------------~~afV~f~~~e~A~~a~~~~~ 65 (88)
T d2cq1a1 11 LHIRK-----LPGEVTETEVIALGLPFGKVTNILMLKGK------------NQAFLELATEEAAITMVNYYS 65 (88)
T ss_dssp EEEES-----CCTTCCHHHHHHTTTTTSCEEEEEEETTT------------TEEEEEESSHHHHHHHHHHHH
T ss_pred EEEeC-----CCCCCCHHHHHHHHhcccccccccccccc------------eEEEEEeCCHHHHHHHHHHHc
Confidence 44566 78899999998775443221333444332 579999988888888887643
No 11
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.82 E-value=68 Score=20.25 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=37.6
Q ss_pred EEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHh
Q 026003 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 131 (245)
Q Consensus 61 ~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d 131 (245)
++-+|| ||..+++++|..+=+..+.-..+.++.++.+. . +--+|+|--.-.+++.+.|+.
T Consensus 2 slfV~n-----L~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg--~----~~g~aFV~f~~~~~a~~ai~~ 61 (80)
T d1cvja1 2 SLYVGD-----LHPDVTEAMLYEKFSPAGPILSIRVCRDMITR--R----SLGYAYVNFQQPADAERALDT 61 (80)
T ss_dssp EEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC--C----EEEEEEEEESSHHHHHHHHTT
T ss_pred EEEEeC-----CCCcCCHHHHHHHHHHhCCEeEEEEEeccccc--C----CCCceEEEECCHHHHHHHHHH
Confidence 455666 79999999999876554433455666544432 1 223677777665666665654
No 12
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.32 E-value=76 Score=20.29 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=42.0
Q ss_pred EeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCce
Q 026003 62 LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEV 137 (245)
Q Consensus 62 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV 137 (245)
+.+|| +|..++++||+.+=+..+.-+++.....+. -.+|+|.-+-.+++.+.+.+.=|.++
T Consensus 13 L~V~N-----Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~----------~~~afV~f~~~~~A~~A~~~l~~~~i 73 (88)
T d2adca2 13 LHLSN-----IPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----------RKMALIQMGSVEEAVQALIDLHNHDL 73 (88)
T ss_dssp EEEEC-----CCTTCCHHHHHHHHHTTSCCEEEEEECSSS----------TTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEC-----CCCCCCHHHHHHHhhccCCEEEEEEeeecc----------cceeEEEECCHHHHHHHHHhccCCEe
Confidence 45665 699999999998876544334555444332 24799998888888888876555443
No 13
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.42 E-value=46 Score=21.66 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=38.1
Q ss_pred EEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHh
Q 026003 61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 131 (245)
Q Consensus 61 ~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d 131 (245)
.+.+|| +|..++++||+.+=...+.-..+.++..+.+. --+|+|.-.-.+++.+.|+.
T Consensus 10 ~l~V~n-----Lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~--------kg~afV~f~~~~~A~~Ai~~ 67 (89)
T d1cvja2 10 NIFIKN-----LDKSIDNKALYDTFSAFGNILSCKVVCDENGS--------KGYGFVHFETQEAAERAIEK 67 (89)
T ss_dssp EEEEES-----CCSSCCHHHHHHHHHTTSCEEEEEECCBTTBC--------CSCEEEEESCHHHHHHHTTS
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhcCCceEEEEEeecCCC--------cceeEEEECCHHHHHHHHHH
Confidence 355666 69999999999887664432455555554332 23788888877776666643
No 14
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.37 E-value=68 Score=21.51 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=46.2
Q ss_pred CceEEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC
Q 026003 55 GNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134 (245)
Q Consensus 55 gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg 134 (245)
+.+-+=++.+|| +|..+|+++|..+=+..+.-..+.+...+. -.+|+|.-.-.+++.++|+..=|
T Consensus 3 ~~s~~~~v~V~N-----L~~~vte~~L~~~F~~~G~i~~~~i~~~~~----------~g~aFV~f~~~e~A~~Ai~~ln~ 67 (108)
T d2adba1 3 GQSPVLRIIVEN-----LFYPVTLDVLHQIFSKFGTVLKIITFTKNN----------QFQALLQYADPVSAQHAKLSLDG 67 (108)
T ss_dssp CCCCEEEEESCS-----CCSTTHHHHHHHHHTTTSCEEEEEEEEETT----------EEEEEEEESCHHHHHHHHHHHHS
T ss_pred CCCCeEEEEEeC-----cCCCCCHHHHHHHHccCCcEEEEEEEeeCC----------CCeEEEEECCHHHHHHHHHHHCC
Confidence 344445566676 699999999998876654334555544331 12699999988888888887656
Q ss_pred Cce
Q 026003 135 VEV 137 (245)
Q Consensus 135 VeV 137 (245)
.++
T Consensus 68 ~~l 70 (108)
T d2adba1 68 QNI 70 (108)
T ss_dssp CCS
T ss_pred CEe
Confidence 554
No 15
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.78 E-value=44 Score=21.40 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=37.4
Q ss_pred EeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC
Q 026003 62 LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134 (245)
Q Consensus 62 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg 134 (245)
+-+|| +|..+++++|+.+=.....-..+..+. .-.+|+|.-.-.+++.+.++..=|
T Consensus 4 l~V~n-----Lp~~~te~~L~~~F~~~G~i~~~~~~~------------~rg~aFV~f~~~~~A~~Ai~~lng 59 (80)
T d2cqha1 4 LYIGN-----LSPAVTADDLRQLFGDRKLPLAGQVLL------------KSGYAFVDYPDQNWAIRAIETLSG 59 (80)
T ss_dssp EEEEC-----CCTTCCHHHHHHHHHHTTCCCSSCEEE------------ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEC-----CCCCCCHHHHHHHHHHhCcEEEeEEec------------ccceEEEEECCHHHHHHHHHHhCC
Confidence 44555 799999999998876643222222222 235899999988888888776433
No 16
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.37 E-value=97 Score=20.10 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=38.4
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCC
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 135 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgV 135 (245)
||..+++++|+.+=.....-..|.++.++...- .+|+|.-.-.+++.+.|+..=|.
T Consensus 19 Lp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~k--------g~afV~f~~~~~a~~Ai~~l~~~ 74 (93)
T d2cq3a1 19 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--------GFGFVTFENSADADRAREKLHGT 74 (93)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTC--------CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHhhcceeeeccccccccCCc--------ceeEEEECCHHHHHHHHHHcCCC
Confidence 699999999998877654334455555544322 37888888777777777765443
No 17
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}
Probab=22.28 E-value=55 Score=23.60 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=28.8
Q ss_pred hhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEE
Q 026003 131 DVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 197 (245)
Q Consensus 131 d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgi 197 (245)
+-||+|+-+..... +.+|+....+-+|.|+..... +|..-.|.-.
T Consensus 11 ~~~Gip~p~~~~v~---------------------s~~dl~~~~~~ig~PvVvKP~-~g~gs~gv~~ 55 (206)
T d1kjqa3 11 EELQLPTSTYRFAD---------------------SESLFREAVADIGYPCIVKPV-MSSSGKGQTF 55 (206)
T ss_dssp TTSCCCBCCEEEES---------------------SHHHHHHHHHHHCSSEEEEES-CC---CCCEE
T ss_pred HHCCCCCCCCeEEC---------------------CHHHHHHHHHHhCCCEEEeec-cCCccCCceE
Confidence 66888877754433 677887777778888888886 4544444433
No 18
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.79 E-value=28 Score=22.96 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=32.5
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhh
Q 026003 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVF 222 (245)
Q Consensus 161 V~p~~~~~El~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~Galvg~~tt~~El~~Ie~~l 222 (245)
+|++++++||+++=.-+|+....-.. +..-|+|.-++...-...|+..=
T Consensus 13 Lp~~~t~~~l~~lF~~~G~~~~~~~~-------------~kg~afV~f~~~~~A~~Ai~~ln 61 (88)
T d1wg1a_ 13 LPQDSNCQEVHDLLKDYDLKYCYVDR-------------NKRTAFVTLLNGEQAQNAIQMFH 61 (88)
T ss_dssp CCSSCCHHHHHHHTCSSCCCCEEEEG-------------GGTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCccChHHHHHHHHhcCceeeeeec-------------cCCceEEEECCHHHHHHHHHHhC
Confidence 68999999999988888854322111 22347787777776666665543
No 19
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.31 E-value=98 Score=19.35 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=33.2
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHH
Q 026003 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIA 130 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~ 130 (245)
+|..+++++|+.+=.....-..+.....+... -.+|+|--.-.++..++++
T Consensus 8 lp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~--------~~~afV~F~~~~~a~~Al~ 58 (75)
T d2ghpa2 8 LPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN--------FRFARIEFARYDGALAAIT 58 (75)
T ss_dssp ECTTCCHHHHHHHHGGGSCEEEEEEEECTTSS--------SEEEEEEESSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHhcCCceEEEEEEeecccc--------ceEEEEEEcchHHhHHHHH
Confidence 69999999999877664422345555444432 2478888776666666653
No 20
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.27 E-value=98 Score=19.89 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=38.4
Q ss_pred EeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC
Q 026003 62 LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134 (245)
Q Consensus 62 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg 134 (245)
+.+|| +|..+++++|+.+=+....-..+..+.++.+. -.+|+|--.-.+++.+.++..=|
T Consensus 11 l~V~n-----Lp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~--------~~~afV~f~~~~~A~~A~~~l~~ 70 (90)
T d2cqia1 11 LYVGN-----LSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--------DPYCFVEFYEHRDAAAALAAMNG 70 (90)
T ss_dssp EEEES-----CCTTCCHHHHHHHHHHHSCEEEEEEECCCCSS--------CCEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEC-----CCCCCCHHHHHHHHHhcCCceeeeeecccCcc--------ceeeEEEECCHHHHHHHHHHcCC
Confidence 45555 69999999999875443222445555544443 24788888777777777776444
No 21
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=20.08 E-value=12 Score=29.33 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=45.7
Q ss_pred HHHHHHhhhCCceEEEeecCceeeeeEEEE----cCCeeeeCCCCCHHHHHHHhhhcCcceeEEeec
Q 026003 125 TEEIIADVLGVEVFRQTIAGNILVGSYCSF----SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVN 187 (245)
Q Consensus 125 ~~~~I~d~LgVeV~~~tIag~~lVGs~~v~----Nn~G~LV~p~~~~~El~~l~~~l~V~v~~gTvN 187 (245)
+.+.|++.+.+||+...+.+..+.=++.-+ ..-|++-++.. -.+++.++++|++++..-++.
T Consensus 61 ta~~ir~~~~iPVV~I~vs~~Dil~al~~a~~~~~kiavV~~~~~-~~~~~~~~~ll~~~i~~~~~~ 126 (186)
T d2pjua1 61 NGAYLKSRLSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQET-IPALVAFQKTFNLRLDQRSYI 126 (186)
T ss_dssp HHHHHHTTCSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSC-CHHHHHHHHHHTCCEEEEEES
T ss_pred HHHHHHHhCCCCEEEEcCCHhHHHHHHHHHHHhCCCEEEEeCCcc-chHHHHHHHHhCCceEEEEec
Confidence 778899999999999988877655443333 33345555555 566899999999999777763
Done!