Query 026004
Match_columns 245
No_of_seqs 140 out of 196
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a03_A T-cell leukemia homeobo 99.7 5.4E-17 1.8E-21 113.2 4.6 54 7-72 1-54 (56)
2 2ecb_A Zinc fingers and homeob 99.7 3E-16 1E-20 120.9 8.6 57 6-74 14-70 (89)
3 2cuf_A FLJ21616 protein; homeo 99.6 1.1E-16 3.9E-21 122.4 5.0 67 7-75 11-82 (95)
4 2cra_A Homeobox protein HOX-B1 99.6 3.2E-16 1.1E-20 113.6 6.4 57 6-74 10-66 (70)
5 1wh5_A ZF-HD homeobox family p 99.6 2.9E-16 1E-20 117.7 6.4 56 7-72 21-78 (80)
6 2dmt_A Homeobox protein BARH-l 99.6 3E-16 1E-20 116.5 6.1 56 7-74 21-76 (80)
7 2dmu_A Homeobox protein goosec 99.6 3.2E-16 1.1E-20 113.4 5.6 56 7-74 11-66 (70)
8 2vi6_A Homeobox protein nanog; 99.6 4.1E-16 1.4E-20 110.4 5.7 54 7-72 7-60 (62)
9 1ig7_A Homeotic protein MSX-1; 99.6 3.6E-16 1.2E-20 109.0 5.3 53 7-71 4-56 (58)
10 2djn_A Homeobox protein DLX-5; 99.6 3.7E-16 1.3E-20 113.2 5.5 57 6-74 10-66 (70)
11 2da2_A Alpha-fetoprotein enhan 99.6 5.6E-16 1.9E-20 111.9 6.2 57 6-74 10-66 (70)
12 3a02_A Homeobox protein arista 99.6 4.1E-16 1.4E-20 109.7 5.3 56 6-73 2-57 (60)
13 2h1k_A IPF-1, pancreatic and d 99.6 4.5E-16 1.5E-20 110.7 5.2 55 6-72 6-60 (63)
14 2e1o_A Homeobox protein PRH; D 99.6 4.7E-16 1.6E-20 112.6 5.4 57 6-74 10-66 (70)
15 2hdd_A Protein (engrailed home 99.6 5.4E-16 1.8E-20 109.4 5.5 56 5-72 5-60 (61)
16 2l9r_A Homeobox protein NKX-3. 99.6 1E-15 3.5E-20 112.7 6.6 57 6-74 7-63 (69)
17 2ecc_A Homeobox and leucine zi 99.6 6E-16 2.1E-20 116.6 5.3 55 7-73 7-61 (76)
18 2da3_A Alpha-fetoprotein enhan 99.6 4.5E-16 1.5E-20 114.6 4.3 56 7-74 21-76 (80)
19 3rkq_A Homeobox protein NKX-2. 99.6 5.9E-16 2E-20 107.0 4.6 53 7-71 6-58 (58)
20 1jgg_A Segmentation protein EV 99.6 8.3E-16 2.8E-20 108.2 5.1 54 7-72 5-58 (60)
21 2da1_A Alpha-fetoprotein enhan 99.6 7.3E-16 2.5E-20 111.2 4.9 57 6-74 10-66 (70)
22 2l7z_A Homeobox protein HOX-A1 99.6 1.5E-15 5E-20 111.2 6.3 57 6-74 10-66 (73)
23 1bw5_A ISL-1HD, insulin gene e 99.6 1.7E-15 5.9E-20 108.4 6.5 59 4-74 4-62 (66)
24 1akh_A Protein (mating-type pr 99.6 1E-15 3.5E-20 107.6 5.2 53 7-71 9-61 (61)
25 1ahd_P Antennapedia protein mu 99.6 7E-16 2.4E-20 111.5 4.4 56 7-74 6-61 (68)
26 2ly9_A Zinc fingers and homeob 99.6 2.5E-15 8.5E-20 109.5 7.3 59 4-74 7-65 (74)
27 2kt0_A Nanog, homeobox protein 99.6 1.5E-15 5E-20 113.1 5.9 56 7-74 26-81 (84)
28 2da5_A Zinc fingers and homeob 99.6 1.6E-15 5.6E-20 111.6 5.9 57 6-74 10-66 (75)
29 2dmp_A Zinc fingers and homeob 99.6 4.2E-15 1.4E-19 113.1 8.3 57 6-74 16-72 (89)
30 2hi3_A Homeodomain-only protei 99.6 1.1E-15 3.6E-20 111.8 4.7 57 7-74 6-62 (73)
31 2dms_A Homeobox protein OTX2; 99.6 1.9E-15 6.5E-20 112.0 6.1 57 6-74 10-66 (80)
32 1uhs_A HOP, homeodomain only p 99.6 1.1E-15 3.8E-20 111.2 4.6 57 7-74 5-61 (72)
33 3nau_A Zinc fingers and homeob 99.6 9.5E-16 3.3E-20 113.1 4.2 50 10-71 11-60 (66)
34 1nk2_P Homeobox protein VND; h 99.6 1.6E-15 5.3E-20 111.9 5.3 54 7-72 13-66 (77)
35 2da4_A Hypothetical protein DK 99.6 4.8E-16 1.6E-20 115.2 2.5 59 7-75 12-72 (80)
36 1ftt_A TTF-1 HD, thyroid trans 99.6 1.6E-15 5.6E-20 109.4 5.2 57 6-74 5-61 (68)
37 2dn0_A Zinc fingers and homeob 99.6 2.7E-15 9.3E-20 110.3 6.5 57 6-74 11-67 (76)
38 1x2m_A LAG1 longevity assuranc 99.6 1.6E-15 5.5E-20 110.9 5.0 53 11-74 8-60 (64)
39 1wh7_A ZF-HD homeobox family p 99.6 2E-15 6.7E-20 113.6 5.6 55 7-72 21-78 (80)
40 1puf_A HOX-1.7, homeobox prote 99.6 1.8E-15 6.1E-20 111.6 5.2 54 7-72 17-70 (77)
41 2k40_A Homeobox expressed in E 99.6 1.9E-15 6.7E-20 108.4 5.0 56 7-74 5-60 (67)
42 2cue_A Paired box protein PAX6 99.6 1.5E-15 5.1E-20 112.8 4.4 55 7-73 11-65 (80)
43 2dmq_A LIM/homeobox protein LH 99.6 2.3E-15 7.7E-20 111.2 5.3 57 6-74 10-66 (80)
44 1zq3_P PRD-4, homeotic bicoid 99.6 1.6E-15 5.4E-20 109.5 4.3 56 6-73 5-60 (68)
45 1k61_A Mating-type protein alp 99.6 2.7E-15 9.3E-20 105.3 5.1 55 8-72 3-58 (60)
46 2cqx_A LAG1 longevity assuranc 99.6 9E-16 3.1E-20 113.0 2.5 55 8-74 13-68 (72)
47 1b8i_A Ultrabithorax, protein 99.6 3.3E-15 1.1E-19 111.5 5.4 55 7-73 24-78 (81)
48 2m0c_A Homeobox protein arista 99.6 3.8E-15 1.3E-19 108.2 5.6 56 7-74 13-68 (75)
49 2r5y_A Homeotic protein sex co 99.5 2.8E-15 9.5E-20 113.1 4.9 55 7-73 32-86 (88)
50 1fjl_A Paired protein; DNA-bin 99.5 3.4E-15 1.2E-19 110.8 5.2 56 6-73 21-76 (81)
51 1yz8_P Pituitary homeobox 2; D 99.5 1.1E-15 3.8E-20 110.1 1.8 57 6-74 6-62 (68)
52 3a01_A Homeodomain-containing 99.5 3.8E-15 1.3E-19 114.0 4.8 57 7-75 21-77 (93)
53 1b72_A Protein (homeobox prote 99.5 4.9E-15 1.7E-19 113.7 4.4 55 7-73 38-92 (97)
54 2e19_A Transcription factor 8; 99.5 9.5E-15 3.3E-19 105.5 5.2 53 8-72 8-60 (64)
55 1puf_B PRE-B-cell leukemia tra 99.5 6.8E-15 2.3E-19 107.1 4.4 60 7-76 5-65 (73)
56 3nar_A ZHX1, zinc fingers and 99.5 1.1E-14 3.6E-19 111.8 5.6 56 7-74 29-84 (96)
57 1du6_A PBX1, homeobox protein 99.5 6.4E-15 2.2E-19 104.6 4.0 56 7-72 7-63 (64)
58 1b72_B Protein (PBX1); homeodo 99.5 5.8E-15 2E-19 110.6 3.2 60 7-76 5-65 (87)
59 1x2n_A Homeobox protein pknox1 99.5 1.8E-14 6.3E-19 104.8 5.6 58 7-74 11-69 (73)
60 1le8_B Mating-type protein alp 99.5 3.2E-14 1.1E-18 106.6 5.7 57 8-74 7-64 (83)
61 1mnm_C Protein (MAT alpha-2 tr 99.5 2.7E-14 9.2E-19 107.4 5.3 55 7-71 31-86 (87)
62 2dmn_A Homeobox protein TGIF2L 99.4 9.3E-14 3.2E-18 104.3 5.5 57 7-73 11-68 (83)
63 2xsd_C POU domain, class 3, tr 99.4 7.9E-14 2.7E-18 116.9 5.6 57 7-75 103-159 (164)
64 1lfb_A Liver transcription fac 99.4 7.4E-14 2.5E-18 109.1 4.9 67 7-75 13-90 (99)
65 1au7_A Protein PIT-1, GHF-1; c 99.4 1.1E-13 3.6E-18 113.9 5.7 55 7-73 91-145 (146)
66 1e3o_C Octamer-binding transcr 99.4 1.1E-13 3.7E-18 115.1 5.7 55 7-73 105-159 (160)
67 2d5v_A Hepatocyte nuclear fact 99.4 1.4E-13 4.6E-18 114.0 5.8 58 7-76 101-158 (164)
68 3k2a_A Homeobox protein MEIS2; 99.4 1.3E-13 4.6E-18 99.8 4.7 55 9-73 4-59 (67)
69 3d1n_I POU domain, class 6, tr 99.4 2E-13 6.8E-18 112.2 5.4 53 7-71 97-149 (151)
70 2da6_A Hepatocyte nuclear fact 99.4 1.5E-13 5.1E-18 108.8 3.9 66 7-74 10-86 (102)
71 1wi3_A DNA-binding protein SAT 99.4 4.8E-13 1.6E-17 100.0 5.6 56 5-71 9-64 (71)
72 3l1p_A POU domain, class 5, tr 99.3 3.8E-13 1.3E-17 111.4 3.0 53 8-72 101-153 (155)
73 1ic8_A Hepatocyte nuclear fact 99.2 3.3E-12 1.1E-16 110.5 2.0 64 7-72 119-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.1 4.4E-11 1.5E-15 92.6 4.3 55 7-71 9-64 (89)
75 2h8r_A Hepatocyte nuclear fact 99.1 7.7E-11 2.6E-15 104.2 5.0 61 8-70 147-218 (221)
76 2da7_A Zinc finger homeobox pr 99.1 1.2E-10 3.9E-15 87.2 5.0 48 12-71 14-61 (71)
77 1mh3_A Maltose binding-A1 home 98.7 6.9E-09 2.4E-13 92.7 2.9 36 26-71 386-421 (421)
78 2nzz_A Penetratin conjugated G 98.3 8.1E-08 2.8E-12 63.6 -0.2 18 57-74 1-18 (37)
79 3h8z_A FragIle X mental retard 97.3 0.0032 1.1E-07 51.3 11.3 106 113-239 5-114 (128)
80 3fdr_A Tudor and KH domain-con 96.3 0.0062 2.1E-07 45.6 5.2 55 118-179 36-94 (94)
81 2eqm_A PHD finger protein 20-l 96.0 0.024 8.4E-07 43.1 7.4 49 113-167 23-73 (88)
82 2ro0_A Histone acetyltransfera 94.9 0.039 1.3E-06 42.5 5.3 44 122-168 34-77 (92)
83 3ask_A E3 ubiquitin-protein li 94.9 0.16 5.6E-06 44.8 10.0 92 117-211 10-109 (226)
84 2eko_A Histone acetyltransfera 94.5 0.031 1.1E-06 42.8 3.8 47 122-171 25-71 (87)
85 3s6w_A Tudor domain-containing 94.2 0.041 1.4E-06 37.5 3.6 37 117-157 9-45 (54)
86 4hae_A CDY-like 2, chromodomai 93.8 0.067 2.3E-06 40.0 4.4 49 112-163 12-60 (81)
87 4a4f_A SurviVal of motor neuro 93.8 0.19 6.5E-06 35.5 6.4 52 180-240 8-59 (64)
88 2lcc_A AT-rich interactive dom 93.7 0.097 3.3E-06 38.8 4.9 47 122-171 20-66 (76)
89 3pnw_C Tudor domain-containing 93.4 0.089 3E-06 38.8 4.3 49 117-174 25-73 (77)
90 3pnw_C Tudor domain-containing 93.4 0.21 7.3E-06 36.8 6.4 64 172-244 5-72 (77)
91 2diq_A Tudor and KH domain-con 93.3 0.075 2.6E-06 40.7 4.0 56 118-180 41-100 (110)
92 2rnz_A Histone acetyltransfera 93.1 0.18 6.3E-06 39.1 5.9 43 122-167 36-78 (94)
93 1mhn_A SurviVal motor neuron p 93.1 0.062 2.1E-06 37.3 3.0 40 118-163 12-51 (59)
94 2bud_A Males-absent on the fir 93.1 0.18 6.2E-06 39.1 5.8 39 123-162 27-67 (92)
95 1wgs_A MYST histone acetyltran 93.0 0.079 2.7E-06 43.0 3.9 44 123-168 25-69 (133)
96 1mhn_A SurviVal motor neuron p 92.7 0.3 1E-05 33.8 6.1 55 180-243 3-57 (59)
97 1g5v_A SurviVal motor neuron p 92.7 0.2 6.7E-06 38.2 5.5 53 180-241 10-62 (88)
98 3db3_A E3 ubiquitin-protein li 92.7 0.59 2E-05 39.6 8.8 86 117-208 18-123 (161)
99 2f5k_A MORF-related gene 15 is 92.6 0.14 4.8E-06 40.2 4.7 37 123-161 34-70 (102)
100 1g5v_A SurviVal motor neuron p 92.6 0.084 2.9E-06 40.2 3.3 45 117-168 18-62 (88)
101 2equ_A PHD finger protein 20-l 92.6 0.23 8E-06 36.7 5.6 51 177-239 6-56 (74)
102 3oa6_A MALE-specific lethal 3 92.5 0.3 1E-05 38.9 6.5 60 180-239 19-81 (110)
103 3ntk_A Maternal protein tudor; 92.4 0.079 2.7E-06 43.4 3.2 57 118-180 56-113 (169)
104 2rsn_A Chromo domain-containin 92.2 0.12 4E-06 38.1 3.6 40 124-163 19-58 (75)
105 3sd4_A PHD finger protein 20; 92.1 0.21 7.1E-06 35.8 4.7 46 113-163 16-61 (69)
106 4a4f_A SurviVal of motor neuro 91.8 0.11 3.8E-06 36.7 3.0 45 117-168 16-60 (64)
107 3s6w_A Tudor domain-containing 91.7 0.45 1.5E-05 32.2 5.8 50 181-239 2-51 (54)
108 3p8d_A Medulloblastoma antigen 91.6 0.34 1.2E-05 35.4 5.4 49 179-239 5-53 (67)
109 2d9t_A Tudor domain-containing 91.5 0.15 5E-06 37.5 3.4 36 118-157 18-53 (78)
110 2d9t_A Tudor domain-containing 90.4 0.66 2.2E-05 34.0 6.1 57 179-244 8-64 (78)
111 1wjq_A KIAA1798 protein; MBT d 90.4 0.29 9.8E-06 38.7 4.3 44 113-161 17-60 (107)
112 3qii_A PHD finger protein 20; 90.1 0.53 1.8E-05 36.0 5.4 50 178-239 19-68 (85)
113 2ys9_A Homeobox and leucine zi 89.7 0.3 1E-05 36.3 3.6 43 12-66 15-57 (70)
114 4b9w_A TDRD1, tudor domain-con 89.4 0.38 1.3E-05 40.1 4.6 55 118-180 74-133 (201)
115 2ldm_A Uncharacterized protein 88.9 0.07 2.4E-06 40.5 0.0 49 179-239 5-53 (81)
116 4b9x_A TDRD1, tudor domain-con 88.7 0.47 1.6E-05 40.3 4.8 54 118-180 74-133 (226)
117 2rso_A Chromatin-associated pr 88.0 0.41 1.4E-05 36.5 3.5 36 127-162 31-68 (92)
118 3fdt_A Chromobox protein homol 87.2 0.58 2E-05 32.5 3.7 36 127-163 4-39 (59)
119 1pfb_A Polycomb protein; chrom 87.1 0.61 2.1E-05 31.9 3.7 36 127-163 4-39 (55)
120 2lcc_A AT-rich interactive dom 86.5 2.4 8.2E-05 31.2 6.9 55 180-239 5-61 (76)
121 3f2u_A Chromobox protein homol 86.3 0.59 2E-05 32.0 3.2 36 127-163 3-38 (55)
122 3h91_A Chromobox protein homol 86.2 0.74 2.5E-05 31.4 3.7 36 127-163 4-39 (54)
123 2hqx_A P100 CO-activator tudor 86.0 0.94 3.2E-05 38.5 5.1 55 118-180 74-134 (246)
124 3i91_A Chromobox protein homol 85.8 0.79 2.7E-05 31.2 3.7 36 127-163 4-39 (54)
125 3fdr_A Tudor and KH domain-con 85.7 1.7 6E-05 32.0 5.8 55 179-243 26-80 (94)
126 1q3l_A Heterochromatin protein 85.3 0.79 2.7E-05 33.3 3.7 41 122-163 12-52 (69)
127 1wjr_A KIAA1617 protein; MBT d 85.1 0.93 3.2E-05 36.5 4.4 46 113-163 15-62 (127)
128 2lrq_A Protein MRG15, NUA4 com 84.9 0.19 6.4E-06 38.1 0.0 37 123-161 24-60 (85)
129 3lwe_A M-phase phosphoprotein 84.2 0.81 2.8E-05 32.1 3.2 36 127-163 5-40 (62)
130 1pdq_A Polycomb protein; methy 84.1 1.1 3.7E-05 32.9 3.9 40 123-163 17-56 (72)
131 2wac_A CG7008-PA; unknown func 84.0 1 3.6E-05 37.0 4.3 54 118-180 60-118 (218)
132 2dnt_A Chromodomain protein, Y 83.3 0.53 1.8E-05 34.5 2.0 38 125-162 12-49 (78)
133 3g7l_A Chromo domain-containin 82.1 1.3 4.5E-05 30.9 3.6 40 123-163 4-44 (61)
134 2f5k_A MORF-related gene 15 is 82.0 2.9 0.0001 32.6 5.9 51 180-239 22-74 (102)
135 3m9q_A Protein MALE-specific l 81.9 4.7 0.00016 31.5 7.0 60 180-239 19-81 (101)
136 1g6z_A CLR4 protein; transfera 81.8 0.78 2.7E-05 32.9 2.4 40 124-163 6-46 (70)
137 3m9p_A MALE-specific lethal 3 81.6 4.9 0.00017 31.9 7.1 59 180-239 19-81 (110)
138 1j7q_A CAVP, calcium vector pr 80.5 3.3 0.00011 28.3 5.2 52 5-64 3-60 (86)
139 2jnf_A Troponin C; stretch act 79.9 2.9 9.9E-05 31.0 5.1 42 5-46 2-47 (158)
140 2kvm_A Chromobox protein homol 79.7 1.8 6.3E-05 31.3 3.8 41 122-163 9-49 (74)
141 1wdc_B Scallop myosin; calcium 79.7 4.3 0.00015 30.2 6.1 54 4-65 6-62 (156)
142 3fwb_A Cell division control p 79.4 4.7 0.00016 29.7 6.1 44 3-46 10-56 (161)
143 1ap0_A Modifier protein 1; chr 79.3 1.9 6.5E-05 31.2 3.7 38 125-163 12-49 (73)
144 2lv7_A Calcium-binding protein 79.2 4.6 0.00016 29.8 6.0 50 7-64 27-79 (100)
145 2d9u_A Chromobox protein homol 78.5 2.4 8.1E-05 30.7 4.1 39 124-163 8-46 (74)
146 2k1b_A Chromobox protein homol 77.6 1.5 5.2E-05 32.1 2.8 37 126-163 21-57 (73)
147 1wgs_A MYST histone acetyltran 77.6 5.3 0.00018 32.2 6.3 45 180-230 12-56 (133)
148 3db3_A E3 ubiquitin-protein li 77.3 5.3 0.00018 33.8 6.4 69 174-244 4-83 (161)
149 3h8z_A FragIle X mental retard 76.2 5 0.00017 32.4 5.8 48 115-169 66-117 (128)
150 2eko_A Histone acetyltransfera 76.0 5.8 0.0002 30.0 5.7 56 179-239 8-66 (87)
151 2dnv_A Chromobox protein homol 75.9 2.2 7.6E-05 30.0 3.2 38 125-163 9-46 (64)
152 3i5g_B Myosin regulatory light 75.3 6.9 0.00024 30.3 6.3 50 7-64 7-59 (153)
153 2diq_A Tudor and KH domain-con 75.2 3.8 0.00013 31.0 4.6 54 180-243 32-85 (110)
154 2mys_C Myosin; muscle protein, 74.9 6.7 0.00023 28.4 5.8 48 9-64 1-51 (149)
155 2lhi_A Calmodulin, serine/thre 74.6 2.4 8.3E-05 33.7 3.5 40 7-46 2-44 (176)
156 2ro0_A Histone acetyltransfera 73.9 8 0.00027 29.5 6.1 53 178-239 21-75 (92)
157 3m9q_A Protein MALE-specific l 73.7 2.7 9.1E-05 32.9 3.4 50 112-162 25-78 (101)
158 3bdl_A Staphylococcal nuclease 73.6 2.7 9.3E-05 40.4 4.2 57 118-180 420-480 (570)
159 3j04_B Myosin regulatory light 73.4 5.3 0.00018 29.0 4.9 37 10-46 1-40 (143)
160 3m9p_A MALE-specific lethal 3 72.2 6.8 0.00023 31.1 5.5 49 112-161 25-77 (110)
161 2k3y_A Chromatin modification- 72.2 3.1 0.00011 34.1 3.7 26 180-209 9-34 (136)
162 2mys_B Myosin; muscle protein, 71.7 7.7 0.00026 29.1 5.6 52 6-65 15-70 (166)
163 3mts_A Histone-lysine N-methyl 71.7 3.5 0.00012 29.2 3.4 34 129-163 3-36 (64)
164 3ox6_A Calcium-binding protein 71.2 13 0.00044 26.9 6.5 39 8-46 3-44 (153)
165 1avs_A Troponin C; muscle cont 70.3 8 0.00027 26.6 5.0 49 8-64 12-63 (90)
166 3i5g_C Myosin catalytic light 70.1 3.8 0.00013 32.0 3.7 39 8-46 1-44 (159)
167 3dlm_A Histone-lysine N-methyl 69.8 41 0.0014 29.4 10.4 92 122-230 20-113 (213)
168 1dtl_A Cardiac troponin C; hel 69.6 8.9 0.00031 28.3 5.5 42 5-46 7-52 (161)
169 2l8d_A Lamin-B receptor; DNA b 69.1 14 0.00047 27.1 6.1 50 180-239 9-58 (66)
170 1c07_A Protein (epidermal grow 69.0 5 0.00017 28.9 3.8 37 10-46 4-43 (95)
171 2ktg_A Calmodulin, putative; e 68.9 7.6 0.00026 26.1 4.6 51 6-64 4-57 (85)
172 1exr_A Calmodulin; high resolu 68.1 9.7 0.00033 28.1 5.4 39 8-46 2-43 (148)
173 2rnz_A Histone acetyltransfera 67.9 8.9 0.0003 29.5 5.2 52 179-239 24-77 (94)
174 2joj_A Centrin protein; N-term 67.6 6.5 0.00022 25.9 3.9 47 10-64 1-50 (77)
175 2pmy_A RAS and EF-hand domain- 65.8 5.7 0.0002 27.8 3.5 47 8-64 19-68 (91)
176 2ovk_B RLC, myosin regulatory 65.5 7.7 0.00026 28.7 4.4 53 5-65 5-60 (153)
177 2equ_A PHD finger protein 20-l 65.3 5.8 0.0002 29.0 3.5 30 117-152 17-46 (74)
178 2yum_A ZZZ3 protein, zinc fing 65.2 17 0.0006 25.5 6.0 61 8-78 9-70 (75)
179 2ee1_A Chromodomain helicase-D 64.3 3.9 0.00014 29.3 2.4 39 123-161 8-46 (64)
180 3dtp_E RLC, myosin regulatory 63.7 10 0.00036 29.9 5.1 53 4-64 45-100 (196)
181 2lmt_A Calmodulin-related prot 63.5 4.8 0.00017 30.3 2.9 39 8-46 2-43 (148)
182 2wac_A CG7008-PA; unknown func 63.3 12 0.00041 30.5 5.5 86 144-243 17-103 (218)
183 1fi6_A EH domain protein REPS1 62.2 7.3 0.00025 27.7 3.6 38 9-46 2-42 (92)
184 2cqq_A RSGI RUH-037, DNAJ homo 62.2 16 0.00054 26.4 5.4 45 8-64 9-53 (72)
185 2ovk_C Myosin catalytic light 61.3 6.7 0.00023 29.2 3.3 39 8-46 1-44 (159)
186 3u0k_A Rcamp; fluorescent prot 60.0 13 0.00046 35.6 5.9 53 4-64 290-345 (440)
187 2hqx_A P100 CO-activator tudor 59.4 16 0.00054 30.8 5.7 103 122-243 14-117 (246)
188 2dig_A Lamin-B receptor; tudor 58.2 22 0.00074 26.2 5.4 50 180-239 12-61 (68)
189 2opo_A Polcalcin CHE A 3; calc 58.1 12 0.0004 25.3 3.9 48 8-64 3-53 (86)
190 1w7j_B Myosin light chain 1; m 57.5 3.1 0.00011 30.6 0.9 49 8-64 2-53 (151)
191 2glo_A Brinker CG9653-PA; prot 57.3 13 0.00043 24.7 3.9 45 8-65 4-48 (59)
192 1tc3_C Protein (TC3 transposas 57.0 23 0.00078 21.0 4.8 40 9-65 5-44 (51)
193 1wdc_C Scallop myosin; calcium 56.5 9.6 0.00033 28.1 3.5 39 8-46 1-44 (156)
194 4ds7_A Calmodulin, CAM; protei 56.3 18 0.00061 26.0 4.9 39 8-46 3-44 (147)
195 2aao_A CDPK, calcium-dependent 53.7 21 0.00073 26.4 5.0 38 8-45 19-59 (166)
196 2f2o_A Calmodulin fused with c 53.4 16 0.00053 27.6 4.3 39 8-46 3-44 (179)
197 3qrx_A Centrin; calcium-bindin 52.8 27 0.00093 25.9 5.5 41 6-46 18-61 (169)
198 2biv_A SCML2 protein, sex COMB 52.6 12 0.00041 32.9 4.0 99 114-227 67-208 (243)
199 1jko_C HIN recombinase, DNA-in 52.4 6.3 0.00021 24.2 1.6 41 9-66 5-45 (52)
200 2bud_A Males-absent on the fir 51.7 25 0.00086 27.0 5.2 53 182-239 16-70 (92)
201 2bl0_C Myosin regulatory light 51.5 15 0.00051 26.5 3.7 36 11-46 1-39 (142)
202 2r58_A Polycomb protein SCM; M 51.4 13 0.00046 33.1 4.1 45 113-162 147-191 (265)
203 4hcz_A PHD finger protein 1; p 51.2 34 0.0012 24.4 5.4 40 179-228 2-41 (58)
204 4b9w_A TDRD1, tudor domain-con 51.1 34 0.0012 28.1 6.4 54 180-243 65-118 (201)
205 1s6c_A KV4 potassium channel-i 50.6 25 0.00086 26.6 5.1 37 8-44 13-50 (183)
206 2biv_A SCML2 protein, sex COMB 50.4 14 0.00049 32.4 4.1 46 113-163 175-220 (243)
207 3oa6_A MALE-specific lethal 3 50.0 7.4 0.00025 30.9 2.0 20 143-162 59-78 (110)
208 1top_A Troponin C; contractIle 48.3 14 0.00047 27.2 3.1 38 8-45 12-52 (162)
209 2ldm_A Uncharacterized protein 53.8 3.8 0.00013 30.9 0.0 33 118-157 15-47 (81)
210 2eqk_A Tudor domain-containing 46.9 21 0.00073 27.1 4.0 39 118-163 30-68 (85)
211 2k3y_A Chromatin modification- 46.5 8.3 0.00029 31.6 1.8 19 144-162 78-96 (136)
212 2llk_A Cyclin-D-binding MYB-li 46.5 46 0.0016 24.0 5.7 43 6-64 22-64 (73)
213 2lrq_A Protein MRG15, NUA4 com 51.8 4.3 0.00015 30.5 0.0 41 180-229 12-52 (85)
214 3i9v_2 NADH-quinone oxidoreduc 44.8 12 0.00041 31.3 2.6 19 28-46 39-57 (181)
215 2e5p_A Protein PHF1, PHD finge 44.1 28 0.00096 25.6 4.1 41 174-220 3-43 (68)
216 1qp6_A Protein (alpha2D); de n 43.8 9.5 0.00032 24.3 1.4 29 14-43 2-30 (35)
217 3kz3_A Repressor protein CI; f 43.5 53 0.0018 22.3 5.4 45 10-67 2-50 (80)
218 2epb_A Chromodomain-helicase-D 42.8 21 0.00072 25.3 3.3 40 123-162 8-52 (68)
219 4b9x_A TDRD1, tudor domain-con 42.7 47 0.0016 27.9 6.0 55 179-243 64-118 (226)
220 2r58_A Polycomb protein SCM; M 42.4 20 0.00067 32.0 3.7 100 113-227 38-180 (265)
221 3p8d_A Medulloblastoma antigen 42.3 29 0.00098 25.1 3.9 33 117-156 14-46 (67)
222 2ccm_A Calexcitin; EF hand, ca 41.6 53 0.0018 24.9 5.7 36 7-42 3-42 (191)
223 2kn2_A Calmodulin; S MAPK phos 41.2 42 0.0014 22.7 4.6 47 10-64 3-52 (92)
224 3ask_A E3 ubiquitin-protein li 40.9 47 0.0016 29.1 5.9 58 182-243 4-65 (226)
225 3fia_A Intersectin-1; EH 1 dom 40.4 44 0.0015 26.3 5.1 38 9-46 26-65 (121)
226 3h6z_A Polycomb protein SFMBT; 40.4 22 0.00076 33.9 4.0 46 113-163 380-425 (447)
227 1g8i_A Frequenin, neuronal cal 39.8 40 0.0014 25.5 4.7 35 8-42 20-55 (190)
228 2kgr_A Intersectin-1; structur 39.8 37 0.0013 25.1 4.4 41 6-46 4-47 (111)
229 2rn7_A IS629 ORFA; helix, all 39.5 33 0.0011 24.9 4.0 48 8-65 5-53 (108)
230 2lvv_A Flagellar calcium-bindi 38.9 41 0.0014 27.2 4.9 39 8-46 43-85 (226)
231 1hlv_A CENP-B, major centromer 38.4 44 0.0015 24.8 4.7 46 8-68 6-51 (131)
232 1p4w_A RCSB; solution structur 38.2 31 0.0011 25.7 3.8 51 4-72 29-79 (99)
233 3pvi_A Protein (pvuii endonucl 37.0 34 0.0012 28.5 4.0 71 11-121 2-72 (157)
234 2obh_A Centrin-2; DNA repair c 36.7 26 0.00088 25.8 3.1 36 11-46 1-39 (143)
235 1iq3_A Ralbp1-interacting prot 36.4 12 0.00042 28.0 1.2 39 8-46 14-55 (110)
236 1eh2_A EPS15; calcium binding, 36.1 44 0.0015 24.9 4.3 38 9-46 8-47 (106)
237 1nya_A Calerythrin; EF-hand, m 36.0 50 0.0017 24.4 4.6 37 10-46 1-44 (176)
238 1fpw_A Yeast frequenin, calciu 35.6 61 0.0021 24.5 5.2 36 8-43 20-56 (190)
239 2eqk_A Tudor domain-containing 35.1 64 0.0022 24.4 5.0 52 179-243 20-72 (85)
240 3pm8_A PFCDPK2, calcium-depend 35.0 54 0.0019 25.8 4.9 48 9-64 50-100 (197)
241 3f70_A Lethal(3)malignant brai 34.1 34 0.0012 32.7 4.1 45 113-162 370-414 (456)
242 1qv0_A Obelin, OBL; photoprote 34.1 52 0.0018 24.9 4.5 37 10-46 14-58 (195)
243 2bec_A Calcineurin B homologou 34.0 26 0.0009 27.2 2.9 56 8-64 21-88 (202)
244 3cs1_A Flagellar calcium-bindi 33.7 78 0.0027 25.2 5.7 39 8-46 40-82 (219)
245 3ut1_A Lethal(3)malignant brai 33.2 45 0.0015 30.4 4.6 46 113-163 251-296 (324)
246 1s1e_A KV channel interacting 31.4 80 0.0027 25.5 5.5 36 8-43 46-82 (224)
247 3bdl_A Staphylococcal nuclease 31.4 61 0.0021 31.0 5.4 54 179-243 410-463 (570)
248 3qii_A PHD finger protein 20; 31.1 57 0.0019 24.7 4.2 34 116-156 28-61 (85)
249 3e9g_A Chromatin modification- 31.0 23 0.00079 28.9 2.1 22 141-162 73-94 (130)
250 2r1j_L Repressor protein C2; p 30.3 28 0.00097 22.2 2.1 23 35-67 21-43 (68)
251 1yx7_A Calsensin, LAN3-6 antig 29.9 33 0.0011 22.7 2.5 45 11-61 2-49 (83)
252 2k0m_A Uncharacterized protein 29.9 39 0.0013 26.3 3.1 30 204-236 63-92 (104)
253 2xi8_A Putative transcription 29.6 29 0.001 22.0 2.1 23 35-67 17-39 (66)
254 3sjs_A URE3-BP sequence specif 29.4 33 0.0011 27.8 2.8 38 6-43 41-81 (220)
255 3mse_B Calcium-dependent prote 29.1 59 0.002 24.9 4.1 36 11-46 34-72 (180)
256 2sas_A Sarcoplasmic calcium-bi 29.0 57 0.0019 24.2 3.9 34 10-43 2-39 (185)
257 1oz2_A Lethal(3)malignant brai 28.6 57 0.002 29.7 4.5 46 113-163 256-301 (331)
258 3ntk_A Maternal protein tudor; 28.3 1.1E+02 0.0038 24.4 5.8 43 180-232 47-90 (169)
259 3k21_A PFCDPK3, calcium-depend 28.2 78 0.0027 24.6 4.8 38 9-46 45-85 (191)
260 2cu7_A KIAA1915 protein; nucle 28.1 82 0.0028 21.9 4.4 43 8-66 10-53 (72)
261 1u78_A TC3 transposase, transp 28.1 47 0.0016 24.4 3.3 41 8-65 5-45 (141)
262 1zug_A Phage 434 CRO protein; 27.6 33 0.0011 22.2 2.1 24 35-68 19-42 (71)
263 2eqj_A Metal-response element- 27.5 74 0.0025 23.1 4.1 31 176-209 9-39 (66)
264 1oz2_A Lethal(3)malignant brai 27.5 54 0.0018 29.9 4.1 44 113-161 152-195 (331)
265 1fse_A GERE; helix-turn-helix 27.4 33 0.0011 22.7 2.1 49 5-71 7-55 (74)
266 1dgu_A Calcium-saturated CIB; 27.2 51 0.0017 25.0 3.4 38 6-44 10-58 (183)
267 2ewt_A BLDD, putative DNA-bind 27.0 1.2E+02 0.0041 19.5 4.9 32 10-46 35-66 (71)
268 1x3p_A Cpsrp43; chromo-2 domai 26.8 12 0.0004 25.6 -0.3 34 128-163 2-36 (54)
269 2elh_A CG11849-PA, LD40883P; s 26.7 1.2E+02 0.0041 21.4 5.1 41 8-65 21-61 (87)
270 2hpk_A Photoprotein berovin; s 26.6 28 0.00097 27.2 1.9 39 5-43 25-66 (208)
271 3e9g_A Chromatin modification- 26.5 48 0.0016 27.0 3.2 24 180-207 7-30 (130)
272 2bl0_B Myosin regulatory light 26.4 47 0.0016 23.7 2.9 37 10-46 2-38 (145)
273 3bs3_A Putative DNA-binding pr 26.3 36 0.0012 22.4 2.1 23 35-67 26-48 (76)
274 1s6i_A CDPK, calcium-dependent 26.1 16 0.00054 28.8 0.3 37 8-44 2-41 (188)
275 1g6u_A Domain swapped dimer; d 26.0 44 0.0015 22.5 2.4 17 9-25 16-32 (48)
276 2x48_A CAG38821; archeal virus 26.0 65 0.0022 20.3 3.3 36 12-64 18-53 (55)
277 3t76_A VANU, transcriptional r 25.9 1.5E+02 0.0051 21.4 5.6 19 28-46 61-79 (88)
278 2ofy_A Putative XRE-family tra 25.8 34 0.0012 23.4 2.0 46 8-67 4-52 (86)
279 1adr_A P22 C2 repressor; trans 25.6 37 0.0013 22.2 2.1 23 35-67 21-43 (76)
280 2jpf_A Hypothetical protein; a 25.1 28 0.00096 27.5 1.5 20 46-66 42-61 (127)
281 3bd1_A CRO protein; transcript 25.0 37 0.0013 23.1 2.0 23 35-67 14-36 (79)
282 1ah9_A IF1, initiation factor 24.9 1E+02 0.0034 21.6 4.4 37 124-189 18-54 (71)
283 1juo_A Sorcin; calcium-binding 24.6 22 0.00076 27.7 0.9 39 5-44 22-63 (198)
284 1r69_A Repressor protein CI; g 24.5 41 0.0014 21.6 2.1 23 35-67 17-39 (69)
285 3feo_A MBT domain-containing p 24.4 90 0.0031 29.5 5.2 99 113-227 46-192 (437)
286 1pdn_C Protein (PRD paired); p 24.2 60 0.002 23.1 3.1 40 9-65 17-56 (128)
287 2pjp_A Selenocysteine-specific 24.1 61 0.0021 24.5 3.3 42 10-64 1-42 (121)
288 3f70_A Lethal(3)malignant brai 23.8 95 0.0032 29.6 5.2 89 113-208 44-180 (456)
289 3feo_A MBT domain-containing p 23.4 68 0.0023 30.4 4.1 45 113-162 366-410 (437)
290 2h1e_A Chromo domain protein 1 23.4 41 0.0014 28.0 2.3 39 124-162 118-160 (177)
291 1s6j_A CDPK, calcium-dependent 23.3 16 0.00053 24.6 -0.2 49 8-64 15-66 (87)
292 3lqv_P Splicing factor 3B subu 23.2 1.2E+02 0.004 20.0 4.0 29 9-38 1-31 (39)
293 2b5a_A C.BCLI; helix-turn-heli 23.2 45 0.0015 22.0 2.1 23 35-67 26-48 (77)
294 1y7y_A C.AHDI; helix-turn-heli 23.0 1.4E+02 0.0047 19.2 4.6 21 26-46 49-69 (74)
295 3l46_A Protein ECT2; alternati 23.0 42 0.0014 25.9 2.2 25 7-31 29-53 (112)
296 2b2y_A CHD-1, chromodomain-hel 22.9 51 0.0017 27.6 2.8 38 124-161 128-167 (187)
297 2jn6_A Protein CGL2762, transp 22.9 95 0.0033 21.9 4.0 43 8-65 4-46 (97)
298 2d8n_A Recoverin; structural g 22.7 1.3E+02 0.0043 23.2 5.0 37 8-44 28-65 (207)
299 3c57_A Two component transcrip 22.6 52 0.0018 23.7 2.6 50 7-74 25-74 (95)
300 1bjf_A Neurocalcin delta; calc 22.6 95 0.0033 23.4 4.2 37 8-44 20-57 (193)
301 3omt_A Uncharacterized protein 22.2 50 0.0017 21.8 2.2 22 35-66 24-45 (73)
302 2cqr_A RSGI RUH-043, DNAJ homo 22.1 1.4E+02 0.0046 21.5 4.7 45 8-64 19-64 (73)
303 3ulq_B Transcriptional regulat 22.1 52 0.0018 23.9 2.4 47 6-70 26-72 (90)
304 1je8_A Nitrate/nitrite respons 22.0 44 0.0015 23.5 2.0 48 7-72 19-66 (82)
305 2k27_A Paired box protein PAX- 22.0 78 0.0027 24.4 3.6 41 8-65 24-64 (159)
306 1khc_A DNA cytosine-5 methyltr 21.6 2.2E+02 0.0075 22.8 6.4 59 174-238 5-65 (147)
307 1uhk_A Aequorin 2, aequorin; E 21.2 80 0.0027 23.7 3.5 37 10-46 10-54 (191)
308 3lsg_A Two-component response 21.1 63 0.0021 23.0 2.7 37 15-64 4-41 (103)
309 4b2u_A S67; toxin, ICK; NMR {S 20.8 40 0.0014 21.6 1.3 22 176-200 9-32 (36)
310 1wy9_A Allograft inflammatory 20.6 89 0.003 23.6 3.6 33 12-44 44-79 (147)
311 2k9q_A Uncharacterized protein 20.4 1E+02 0.0034 20.6 3.5 21 26-46 38-58 (77)
312 2a6c_A Helix-turn-helix motif; 20.2 55 0.0019 22.5 2.2 23 35-67 34-56 (83)
No 1
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.66 E-value=5.4e-17 Score=113.20 Aligned_cols=54 Identities=22% Similarity=0.449 Sum_probs=48.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
++.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||+++|.
T Consensus 1 ~T~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 1 MTSFSRSQVLELERRFLR--QKYLASAERAALAKALRMTD----------AQVKTWFQNRRTKWRR 54 (56)
T ss_dssp ---CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHh--cCCcCHHHHHHHHHHhCcCH----------HHhhHhhHHhhhhhcc
Confidence 478999999999999998 69999999999999999999 9999999999999874
No 2
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=3e-16 Score=120.93 Aligned_cols=57 Identities=18% Similarity=0.398 Sum_probs=53.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+-+||.+||.+||+.|.. ++||+...|.+||..++|++ +||++||||||++++.+.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~lgLte----------~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN--SSVLTDEELNRLRAQTKLTR----------REIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCcCh----------HHCeecccccchHHHHHH
Confidence 4668999999999999999 58999999999999999998 999999999999998655
No 3
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=122.43 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=61.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcC-----CCcccCCCCcCCcchhhhhhhccccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFS-----FSASRAARPAITWLQVQSWFRDKQKKSQAKSK 75 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~-----lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~ 75 (245)
=+.||+.||..||+.|+. ++||+...++.||+.+| .+.+++|+..|+++||++||||||++++.+..
T Consensus 11 R~~ft~~ql~~Le~~F~~--~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 11 RFTWRKECLAVMESYFNE--NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999 69999999999999999 88888899999999999999999999886553
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=3.2e-16 Score=113.56 Aligned_cols=57 Identities=18% Similarity=0.421 Sum_probs=52.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.-+.||+.|+..||+.|.. ++||+...+..||..++|++ .||++||||||++++...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 10 KRIPYSKGQLRELEREYAA--NKFITKDKRRKISAATSLSE----------RQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHTTTSSC
T ss_pred CCCcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCCH----------HHhhHhhHhHHHHhcccC
Confidence 3468999999999999998 68999999999999999998 999999999999997554
No 5
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=2.9e-16 Score=117.75 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=51.7
Q ss_pred cCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIG--EASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~--~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
-+.||.+|+.+||+.|+..+ ++||+...+++||..++|++ +||++||||||+|++.
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~----------~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 21 RTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPR----------QVLKVWLHNNKHSGPS 78 (80)
T ss_dssp SCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCH----------HHHHHHHHHHSSSSSC
T ss_pred CccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCc----------ccccCCccccCcCCCC
Confidence 46799999999999999943 58999999999999999998 9999999999999874
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=116.47 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=52.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||..|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++...
T Consensus 21 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 21 RTVFTELQLMGLEKRFEK--QKYLSTPDRIDLAESLGLSQ----------LQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCH----------HHeeeccHHHHHHhhccc
Confidence 467999999999999999 58999999999999999998 999999999999998654
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=113.35 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=52.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
=+.||+.|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++.+.
T Consensus 11 Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 11 RTIFTDEQLEALENLFQE--TKYPDVGTREQLARKVHLRE----------EKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCCCH----------HHeehccccccccccccC
Confidence 467999999999999999 69999999999999999998 999999999999997655
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.62 E-value=4.1e-16 Score=110.38 Aligned_cols=54 Identities=19% Similarity=0.424 Sum_probs=50.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
=+.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.
T Consensus 7 Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQK--QKYLSLQQMQELSSILNLSY----------KQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -CCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTCGG
T ss_pred CCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHhhHHhHHhhcchhh
Confidence 468999999999999998 69999999999999999999 9999999999999874
No 9
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=3.6e-16 Score=108.97 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=50.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
=+.||+.|+..||+.|.. ++||+...+..||..+|||+ .||++||||||++++
T Consensus 4 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQ--KQYLSIAERAEFSSSLSLTE----------TQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHhhhhhhHhhhhhc
Confidence 368999999999999998 68999999999999999999 999999999999875
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=113.19 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=52.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
+-+.||..|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 10 PRTIYSSFQLAALQRRFQK--TQYLALPERAELAASLGLTQ----------TQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SSCSSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHSSCCH----------HHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCH----------HHHHHHHHHHhhhhcccC
Confidence 3478999999999999988 68999999999999999998 999999999999997554
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=111.86 Aligned_cols=57 Identities=14% Similarity=0.359 Sum_probs=52.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
+-+.||+.|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++.+.
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDA--NAYPKDDEFEQLSNLLNLPT----------RVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHSCCCH----------HHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCH----------HHhHHhhHhhhHHHhhcc
Confidence 3468999999999999999 68999999999999999998 999999999999998654
No 12
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.61 E-value=4.1e-16 Score=109.73 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=49.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
+=+.||+.|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR--THYPDVFTREELAMKIGLTE----------ARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCH----------HHHHHHhhhhhhhhHhh
Confidence 3478999999999999998 69999999999999999999 99999999999998754
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.61 E-value=4.5e-16 Score=110.69 Aligned_cols=55 Identities=16% Similarity=0.348 Sum_probs=51.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
+=+.||+.|+..||+.|.. ++||+...+..||..+|||+ .||++||||||++++.
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLF--NKYISRPRRVELAVMLNLTE----------RHIKIWFQNRRMKWKK 60 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCH----------HHhhHHHHhhhhhhhh
Confidence 3468999999999999998 69999999999999999999 9999999999999864
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=4.7e-16 Score=112.64 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=52.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.-+.||..|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++...
T Consensus 10 ~R~~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 10 GQVRFSNDQTIELEKKFET--QKYLSPPERKRLAKMLQLSE----------RQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCCCH----------HHhhHhhHhhHhhcCCCC
Confidence 4578999999999999998 69999999999999999988 999999999999987554
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.61 E-value=5.4e-16 Score=109.44 Aligned_cols=56 Identities=18% Similarity=0.442 Sum_probs=50.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 5 DSWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
-+=+.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 5 RPRTAFSSEQLARLKREFNE--NRYLTERRRQQLSSELGLNE----------AQIKIWFKNKRAKIKK 60 (61)
T ss_dssp --CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHhhhhcccccc
Confidence 34578999999999999998 69999999999999999999 9999999999999863
No 16
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=112.67 Aligned_cols=57 Identities=19% Similarity=0.410 Sum_probs=52.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-++..|+.|+.+||+.|.. ++||+...|..||.++||++ +||++||||||+|+|.+.
T Consensus 7 ~~~~~t~~ql~~LE~~F~~--~~yp~~~~r~~LA~~l~Lte----------~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 7 HHSHMSHTQVIELERKFSH--QKYLSAPERAHLAKNLKLTE----------TQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHSCCSS
T ss_pred CCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCh----------hheeecchhhhhhhhhhh
Confidence 4677899999999999998 68999999999999999999 999999999999998665
No 17
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=6e-16 Score=116.59 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=51.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
-..||++|+.+||+.|.. ++||+..++++||..+||++ +||++||||||+++|..
T Consensus 7 r~kfT~~Ql~~Le~~F~~--~~YPs~~er~~LA~~tgLte----------~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQ--CQWARREDYQKLEQITGLPR----------PEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCcCH----------HHhhHHhHhhHHHHHHH
Confidence 457999999999999999 59999999999999999999 99999999999998744
No 18
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=4.5e-16 Score=114.55 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=52.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||++|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++.+.
T Consensus 21 Rt~ft~~Ql~~Le~~f~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 21 RTTITPEQLEILYQKYLL--DSNPTRKMLDHIAHEVGLKK----------RVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CSSCCTTTHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcCH----------HHhHHHhHHHHHhHhhhc
Confidence 467999999999999999 59999999999999999998 999999999999998654
No 19
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.60 E-value=5.9e-16 Score=107.03 Aligned_cols=53 Identities=26% Similarity=0.467 Sum_probs=49.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
=+.||+.|+..||..|.. ++||+...+..||..+||++ .||++||||||+++|
T Consensus 6 Rt~~t~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 6 RVLFSQAQVYELERRFKQ--QRYLSAPERDQLASVLKLTS----------TQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcCH----------HHHHHhhHHhhccCC
Confidence 468999999999999987 69999999999999999999 999999999999874
No 20
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.59 E-value=8.3e-16 Score=108.16 Aligned_cols=54 Identities=17% Similarity=0.389 Sum_probs=50.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
=+.||+.|+..||+.|.. ++||+...+..||..+|||+ .||++||||||++.+.
T Consensus 5 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYK--ENYVSRPRRCELAAQLNLPE----------STIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcCH----------HHHHHhhHHHHhHhhc
Confidence 368999999999999998 58999999999999999999 9999999999998763
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=7.3e-16 Score=111.24 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=52.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
+=+.||+.|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++.+.
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDI--NNSPSEEQIKEMADKSGLPQ----------KVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHhCCCH----------HHHHHHhhhhhHHHhhhc
Confidence 3468999999999999998 59999999999999999999 999999999999987654
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.59 E-value=1.5e-15 Score=111.22 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=52.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.-+.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 10 KRVPYTKVQLKELEREYAT--NKFITKDKRRRISATTNLSE----------RQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCSCHHHHHHHHHHHHH--TSCCCHHHHHHHHHHHTSCS----------HHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCHHHHHHHHHHHhh--CCCcCHHHHHHHHHHHCCCH----------HHHHHHHHHHhHHHHHHh
Confidence 3467999999999999999 58999999999999999999 999999999999998654
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=1.7e-15 Score=108.36 Aligned_cols=59 Identities=14% Similarity=0.257 Sum_probs=53.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 4 EDSWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 4 ~~~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
--+=+.||++|+..||+.|.. ++||+...++.||..+|||+ .||++||||||++++.+.
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAA--NPRPDALMKEQLVEMTGLSP----------RVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHHHHHhHHHHHHHhHHh
Confidence 345678999999999999999 69999999999999999999 999999999999987654
No 24
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.59 E-value=1e-15 Score=107.65 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
=+.||..|+..||..|.. ++||+...++.||..+|||+ .||++||||||++++
T Consensus 9 Rt~ft~~q~~~Le~~f~~--~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 9 KSSISPQARAFLEEVFRR--KQSLNSKEKEEVAKKCGITP----------LQVRVWFINKRMRSK 61 (61)
T ss_dssp ---CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhccC
Confidence 367999999999999998 59999999999999999999 999999999999874
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.59 E-value=7e-16 Score=111.53 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=51.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++...
T Consensus 6 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 6 RQTYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLTE----------RQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp TCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHCcCH----------hhhhHHhHHHHhHHhHhc
Confidence 468999999999999998 58999999999999999999 999999999999987544
No 26
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=109.50 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=53.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 4 EDSWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 4 ~~~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
...=+.||+.|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++...
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK--NQFPHDSEIIRLMKITGLTK----------GEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcCH----------HHeeeCChhHhHHHHhhC
Confidence 445578999999999999998 69999999999999999999 999999999999987544
No 27
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=113.13 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=51.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.+.
T Consensus 26 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 26 RTVFSSTQLCVLNDRFQR--QKYLSLQQMQELSNILNLSY----------KQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SSCCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHTTTSCC
T ss_pred CCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHHh
Confidence 467999999999999998 59999999999999999998 999999999999987543
No 28
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=111.64 Aligned_cols=57 Identities=18% Similarity=0.392 Sum_probs=52.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-..+||+.||..||+.|.. ++||+...+..||..++|++ +||++||||||++++.+.
T Consensus 10 kr~~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQ--NPLPLDEELDRLRSETKMTR----------REIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHTTHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhhHhhHHHHHHHHHhh
Confidence 3567999999999999999 69999999999999999999 999999999999987655
No 29
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=113.14 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=52.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.+||+.||.+||+.|.. ++||+...++.||..++|++ +||++||||||+|++.+.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~~----------~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK--SSFPTQAELDRLRVETKLSR----------REIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHhCCCH----------HhccHhhHhHHHHHHHHh
Confidence 3456999999999999999 59999999999999999998 999999999999987655
No 30
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=1.1e-15 Score=111.78 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=51.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||+.|+..||+.|... ++||+...+..||..+||++ .||++||||||++++.+.
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~~~l~~----------~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 6 VSGPTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEAGLTE----------EQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSSCCHHHHHHHHHHHHHT-TSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHhc
Confidence 4689999999999999832 48999999999999999999 999999999999987554
No 31
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.9e-15 Score=111.99 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=52.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.-+.||..|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++.+.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAK--TRYPDIFMREEVALKINLPE----------SRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHhhhhhHHHhHHhhHHH
Confidence 3468999999999999999 68999999999999999998 999999999999988655
No 32
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=1.1e-15 Score=111.18 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=51.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||+.|+..||+.|... ++||+...++.||..+||++ .||++||||||++++.+.
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 5 AATMTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEAGLTE----------EQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCHHHHHHHHHHHHSS-CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHCcCH----------HHhhHHhHHHHHHHhhhc
Confidence 4689999999999999842 48999999999999999999 999999999999987654
No 33
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.57 E-value=9.5e-16 Score=113.14 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 10 FTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
=|.+|+.+||+.|.. ++||+..++++||..+|||+ +||++||||||+|+|
T Consensus 11 ~~~~Ql~~LE~~F~~--~~YPs~~er~eLA~~tgLt~----------~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ--SQFPDDAEVYRLIEVTGLAR----------SEIKKWFSDHRYRCQ 60 (66)
T ss_dssp CCHHHHHHHHHHHHG--GGSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCcCH----------HHhhHhcccchhhhh
Confidence 489999999999999 59999999999999999999 999999999999987
No 34
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.57 E-value=1.6e-15 Score=111.91 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=50.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.
T Consensus 13 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 13 RVLFTKAQTYELERRFRQ--QRYLSAPEREHLASLIRLTP----------TQVKIWFQNHRYKTKR 66 (77)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHhhcchhh
Confidence 467999999999999998 68999999999999999998 9999999999999874
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.8e-16 Score=115.23 Aligned_cols=59 Identities=15% Similarity=0.311 Sum_probs=52.2
Q ss_pred cCCCCHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEI--GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKSK 75 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~--~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~ 75 (245)
-+.||.+|+..||+.|..+ +.+||+...++.||.++||++ .||++||||||+|++....
T Consensus 12 Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~----------~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 12 RTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC----------EIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp SCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCH----------HHhhHhHHHHHHHHhhccC
Confidence 4679999999999999883 118999999999999999998 9999999999999886543
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.57 E-value=1.6e-15 Score=109.41 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=52.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
+-+.||+.|+..||..|.. ++||+...+..||..+|||+ .||++||||||++++...
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 5 RRVLFSQAQVYELERRFKQ--QKYLSAPEREHLASMIHLTP----------TQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SCSSCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHhHHHhHHHhhhhhhhh
Confidence 3478999999999999998 58999999999999999999 999999999999987554
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=110.34 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=52.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.=+.||+.||..||+.|.. ++||+...++.||..++|++ +||++||||||++++.+.
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCR--NQFPGQSEVEHLTKVTGLST----------REVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH--SSSCCSHHHHHHHHHHCCCH----------HHHHHHHHHHHHHSSSCC
T ss_pred CCccCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCCh----------HHhhHHhHHHhHHHHHhc
Confidence 3478999999999999998 59999999999999999999 999999999999987544
No 38
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=1.6e-15 Score=110.87 Aligned_cols=53 Identities=15% Similarity=0.390 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 11 TLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 11 T~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.+.|+.+||+.|... ++||+...|.+||.++|||+ +||++||||||+++|+-.
T Consensus 8 ~~~~~~~LE~~F~~~-~~yp~~~~r~~LA~~l~Lte----------rQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 8 TAQPNAILEKVFTAI-TKHPDEKRLEGLSKQLDWDV----------RSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SSCHHHHHHHHHHTT-CSSCCHHHHHHHHHHHCSCH----------HHHHHHHHHHHHHSCCSS
T ss_pred CchHHHHHHHHHHHc-CCCcCHHHHHHHHHHhCCCH----------HHHHHHHHHHHhccCCCC
Confidence 456899999999654 59999999999999999999 999999999999998544
No 39
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.57 E-value=2e-15 Score=113.65 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=49.5
Q ss_pred cCCCCHHHHHHHHHHHHHh-C--CCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEI-G--EASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~-~--~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
-+.||.+|+.+|| .|.++ + ++||+...|++||..++|++ .||++||||||+|++.
T Consensus 21 Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e----------~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 21 RTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRR----------QVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCH----------HHHHHHHHTTSCCSCC
T ss_pred CccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCc----------CcccccccccccCCCC
Confidence 3679999999999 79882 1 48999999999999999999 9999999999999874
No 40
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.57 E-value=1.8e-15 Score=111.59 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=50.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
=+.||..|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++.
T Consensus 17 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk 70 (77)
T 1puf_A 17 RCPYTKHQTLELEKEFLF--NMYLTRDRRYEVARLLNLTE----------RQVKIWFQNRRMKMKK 70 (77)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHH
Confidence 467999999999999998 68999999999999999999 9999999999999864
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=108.36 Aligned_cols=56 Identities=18% Similarity=0.380 Sum_probs=52.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
=+.||+.|+..||+.|.. ++||+...++.||..+||++ .||++||||||++++.+.
T Consensus 5 Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRV--NCYPGIDILEDLAQKLNLEL----------DRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp SCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcCH----------HHhhHhhHhHHHHHhHhc
Confidence 468999999999999988 69999999999999999999 999999999999998655
No 42
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.5e-15 Score=112.75 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=51.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
=+.||..|+..||+.|.. ++||+...+..||..++|++ .||++||||||++++.+
T Consensus 11 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 11 RTSFTQEQIEALEKEFER--THYPDVFARERLAAKIDLPE----------ARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp CCCSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhhHHHHHHHHHHHHH
Confidence 467999999999999988 68999999999999999998 99999999999998744
No 43
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=111.20 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=52.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.-+.||+.|+..||+.|.. ++||+...++.||..++|++ .||++||||||++++.+.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAI--NHNPDAKDLKQLAQKTGLTK----------RVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCH----------HHhhHccHHHHHHHHHHH
Confidence 3468999999999999998 58999999999999999998 999999999999987554
No 44
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.56 E-value=1.6e-15 Score=109.48 Aligned_cols=56 Identities=21% Similarity=0.478 Sum_probs=51.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
+=+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++..
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQ--GRYLTAPRLADLSAKLALGT----------AQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCH----------HHhhHhhHHHHHHHHHH
Confidence 3478999999999999988 68999999999999999999 99999999999998744
No 45
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.56 E-value=2.7e-15 Score=105.30 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 8 PDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
++||+.|+..||+.|..+ +++||+...++.||..+|||+ +||++||||||++++.
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~----------~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHccccc
Confidence 589999999999999983 248999999999999999999 9999999999999863
No 46
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=9e-16 Score=113.02 Aligned_cols=55 Identities=16% Similarity=0.396 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 8 PDFTLAEIKEMESMY-KEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f-~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
.+||.+|+.+||+.| .. ++||+...++.||..+||++ .||++||||||+++|+..
T Consensus 13 ~r~~~~ql~~LE~~F~~~--~~yp~~~~r~~LA~~l~l~e----------~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 13 PVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSV----------RKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHSSCC
T ss_pred CCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCCh----------hhcchhhhhcccCCCCCC
Confidence 468999999999999 66 69999999999999999999 999999999999998544
No 47
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.55 E-value=3.3e-15 Score=111.47 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=51.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++..
T Consensus 24 Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 24 RQTYTRYQTLELEKEFHT--NHYLTRRRRIEMAHALSLTE----------RQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHTT
T ss_pred CcccCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHhhhhhhhh
Confidence 467999999999999999 58999999999999999998 99999999999998754
No 48
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.55 E-value=3.8e-15 Score=108.17 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=52.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||+.|+..||..|.. +.||+...+..||..+||++ .||++||||||++++.+.
T Consensus 13 Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 13 RTTFTSYQLEELEKVFQK--THYPDVYAREQLAMRTDLTE----------ARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHHHHHHHHHH
Confidence 467999999999999998 58999999999999999998 999999999999988654
No 49
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.55 E-value=2.8e-15 Score=113.08 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=51.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.+
T Consensus 32 Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 32 RTSYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLTE----------RQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCcCH----------HHhhHHhHHHHHHhHhh
Confidence 467999999999999988 69999999999999999999 99999999999998754
No 50
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.55 E-value=3.4e-15 Score=110.83 Aligned_cols=56 Identities=16% Similarity=0.378 Sum_probs=51.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
.-+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.+
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFER--TQYPDIYTREELAQRTNLTE----------ARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHhhhhhhh
Confidence 3467999999999999998 69999999999999999998 99999999999998754
No 51
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.54 E-value=1.1e-15 Score=110.13 Aligned_cols=57 Identities=14% Similarity=0.366 Sum_probs=52.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
+=+.||+.|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.+.
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQR--NRYPDMSTREEIAVWTNLTE----------ARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTT--CSSCCTTTTTHHHHHTTSCH----------HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHhHHHHHHh
Confidence 3478999999999999988 69999999999999999999 999999999999987554
No 52
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.54 E-value=3.8e-15 Score=114.01 Aligned_cols=57 Identities=23% Similarity=0.460 Sum_probs=52.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKSK 75 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~ 75 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||+|++.+..
T Consensus 21 Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 21 RTSFTRIQVAELEKRFHK--QKYLASAERAALARGLKMTD----------AQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHTTTCCH----------HHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCh----------hhcccccHhhhhhhhhhhH
Confidence 467999999999999999 69999999999999999999 9999999999999986553
No 53
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4.9e-15 Score=113.73 Aligned_cols=55 Identities=20% Similarity=0.453 Sum_probs=51.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
=+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||++++.+
T Consensus 38 Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHF--NKYLSRARRVEIAATLELNE----------TQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhHHHHHHHhHHHhHH
Confidence 467999999999999988 69999999999999999999 99999999999998754
No 54
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=9.5e-15 Score=105.48 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
..++.+|+..||+.|.. ++||+...|..||.++||++ +||++||||||+|.+.
T Consensus 8 ~~p~~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~e----------~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYAL--NAQPSAEELSKIADSVNLPL----------DVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCh----------hhcCcchhcccCCCCC
Confidence 34789999999999987 69999999999999999999 9999999999998753
No 55
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.52 E-value=6.8e-15 Score=107.12 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=52.9
Q ss_pred cCCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccccC
Q 026004 7 WPDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKSKS 76 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~~ 76 (245)
=+.||..|+..||..|.+| .++||+...++.||..+|||+ +||++||||||++++.+...
T Consensus 5 R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHCTTT
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhhccccccc
Confidence 3689999999999999532 379999999999999999999 99999999999999866543
No 56
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=111.80 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=51.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||+.|+..||+.|.. ++||+...++.||..++|++ .||++||||||+|+|...
T Consensus 29 Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 29 ICKKTPEQLHMLKSAFVR--TQWPSPEEYDKLAKESGLAR----------TDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp SSSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHTTTC
T ss_pred CccCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCH----------HHeeecchhhhhHhhhhc
Confidence 367999999999999998 69999999999999999999 999999999999998543
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=6.4e-15 Score=104.61 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=50.2
Q ss_pred cCCCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKE-IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~-~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
=+.||..|+..||+.|.+ ..++||+...++.||..+||++ +||++||||||++++.
T Consensus 7 R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 7 GRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHTTTSSC
T ss_pred CCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhcc
Confidence 467999999999999953 2369999999999999999998 9999999999999863
No 58
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.50 E-value=5.8e-15 Score=110.56 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=52.8
Q ss_pred cCCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccccC
Q 026004 7 WPDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKSKS 76 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~~ 76 (245)
-+.||..|+..||+.|.+| .+.||+...++.||..+||++ +||++||||||++++.+...
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhhhcccc
Confidence 3689999999999999532 369999999999999999998 99999999999998866544
No 59
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.8e-14 Score=104.81 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=52.4
Q ss_pred cCCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||..|+..||+.|.++ .+.||+...++.||..+||++ .||++||||||++++...
T Consensus 11 R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 11 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTL----------LQVNNWFINARRRILQSG 69 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCH----------HHHHHHhHHHHhhccccc
Confidence 4679999999999999873 469999999999999999999 999999999999987544
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.48 E-value=3.2e-14 Score=106.55 Aligned_cols=57 Identities=19% Similarity=0.357 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 8 PDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
++||..|+..||+.|..| .+.||+...++.||..+||++ .||++||||||++++...
T Consensus 7 ~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~----------~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 7 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCH----------HHcccccHHHHccccccc
Confidence 569999999999999982 348999999999999999999 999999999999997654
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.48 E-value=2.7e-14 Score=107.45 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=50.6
Q ss_pred cCCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
-+.||..|+..||+.|..+ +++||+...++.||..+||++ +||++||||||+++|
T Consensus 31 r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~----------~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVSNRRRKEK 86 (87)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhhcc
Confidence 4679999999999999983 248999999999999999998 999999999999986
No 62
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.44 E-value=9.3e-14 Score=104.31 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=51.6
Q ss_pred cCCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
-+.||..|+..||+.|.++ .+.||+...++.||..+|||+ +||++||||||++++..
T Consensus 11 R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~----------~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 11 KGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSL----------LQISNWFINARRRILPD 68 (83)
T ss_dssp CSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHTHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHhhHHhhhhHhhhcHH
Confidence 4679999999999999874 459999999999999999998 99999999999998643
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.43 E-value=7.9e-14 Score=116.86 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=50.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKSK 75 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~ 75 (245)
-+.||..|+..||+.|.. ++||+...|..||..++|++ +||++||||||+|+|....
T Consensus 103 Rt~ft~~Ql~~LE~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 103 RTSIEVGVKGALESHFLK--CPKPSAHEITGLADSLQLEK----------EVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTBSCC
T ss_pred ceeccHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCCCh----------hhhhhhhHHhhHHHhhccC
Confidence 367999999999999999 69999999999999999999 9999999999999986653
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.43 E-value=7.4e-14 Score=109.13 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=52.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcC--------CCcccC---CCCcCCcchhhhhhhccccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFS--------FSASRA---ARPAITWLQVQSWFRDKQKKSQAKSK 75 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~--------lS~~r~---Gk~~v~~~QVk~WFQNRR~k~k~k~~ 75 (245)
=+.||+.|+..||+.|.. ++||+...|++||+.+| +++.-. |.-.|++.||++||||||++.+.|.+
T Consensus 13 Rt~ft~~Ql~~LE~~F~~--~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~~ 90 (99)
T 1lfb_A 13 RFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHK 90 (99)
T ss_dssp CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC-
T ss_pred CcCcCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhch
Confidence 367999999999999998 69999999999999944 122121 22226669999999999999876653
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.43 E-value=1.1e-13 Score=113.87 Aligned_cols=55 Identities=13% Similarity=0.320 Sum_probs=51.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||+|+|.+
T Consensus 91 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 91 RTTISIAAKDALERHFGE--HSKPSSQEIMRMAEELNLEK----------EVVRVWFCNRRQREKRV 145 (146)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHTTSC
T ss_pred CcCccHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCh----------hhchhhhHhhhhhhhcc
Confidence 467999999999999999 69999999999999999998 99999999999998753
No 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.42 E-value=1.1e-13 Score=115.06 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=51.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||+|+|.+
T Consensus 105 Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 105 RTSIETNIRVALEKSFME--NQKPTSEDITLIAEQLNMEK----------EVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTSC
T ss_pred ccccCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHCCCh----------HHhhHhhHHhhhhhhcc
Confidence 467999999999999999 69999999999999999999 99999999999998753
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.42 E-value=1.4e-13 Score=114.04 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=51.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccccC
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKSKS 76 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~~ 76 (245)
-+.||+.|+..||+.|.. ++||+...++.||..+||++ +||++||||||++.+.....
T Consensus 101 Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~la~~l~L~~----------~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 101 RLVFTDVQRRTLHAIFKE--NKRPSKELQITISQQLGLEL----------STVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTSSCC---
T ss_pred CCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCH----------HHhhhcChhhhccccccCCC
Confidence 467999999999999999 59999999999999999998 99999999999998866533
No 68
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=1.3e-13 Score=99.85 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccccc
Q 026004 9 DFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAK 73 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k 73 (245)
.||++|+..||..|.++ .+.||+...++.||..+|||+ .||++||||||++.+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI----------LQVNNWFINARRRIVQP 59 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCH----------HHhhhhhHHHHHHHhHH
Confidence 69999999999999943 479999999999999999999 99999999999998744
No 69
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=112.19 Aligned_cols=53 Identities=15% Similarity=0.385 Sum_probs=50.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
-+.||..|+..||+.|.. ++||+...+..||..+||++ +||++||||||+|+|
T Consensus 97 Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNrR~k~K 149 (151)
T 3d1n_I 97 RTSFTPQAIEALNAYFEK--NPLPTGQEITEMAKELNYDR----------EVVRVWFSNRRQTLK 149 (151)
T ss_dssp CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCCH----------HHhHHHHHHHHhccC
Confidence 467999999999999999 69999999999999999999 999999999999986
No 70
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.5e-13 Score=108.79 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=53.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCC--------Cccc---CCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSF--------SASR---AARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~l--------S~~r---~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
-+.||++|+.+||+.|.. ++||+...|++||+.+|. ++.- -|+-.|++.||++||||||++++.+.
T Consensus 10 Rt~ft~~ql~~Le~~F~~--~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~~ 86 (102)
T 2da6_A 10 RFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQ 86 (102)
T ss_dssp CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHhh
Confidence 467999999999999999 589999999999999931 1111 13445677999999999999987553
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=4.8e-13 Score=100.01 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 5 DSWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
-+=+.||.+|+..|+..|+.. +.|||.+.|+.||.+++|++ .+|++||||||+-.+
T Consensus 9 R~RT~~s~eQL~~Lqs~f~~~-~~yPd~~~r~~La~~tGL~~----------~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 9 RSRTKISLEALGILQSFIHDV-GLYPDQEAIHTLSAQLDLPK----------HTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHSCCCH----------HHHHHHHHHHHHHCC
T ss_pred CCCccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCH----------HHHHHhhccceeeec
Confidence 345789999999999999995 49999999999999999999 999999999999765
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.33 E-value=3.8e-13 Score=111.40 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
+.||..|+..||+.|.. ++||+...+..||..+|+++ .||++||||||+|+|.
T Consensus 101 t~ft~~Q~~~Le~~F~~--~~yps~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 101 TSIENRVRWSLETMFLK--SPKPSLQQITHIANQLGLEK----------DVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCCCHHHHHHHHTTTTT--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHcCCCh----------hheeeccccccccccC
Confidence 67999999999999987 69999999999999999998 9999999999999874
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=3.3e-12 Score=110.46 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=52.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCC--------Cc---ccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSF--------SA---SRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~l--------S~---~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
-+.||+.|+.+||+.|..+ +||+...|++||..+|. ++ ---|+-.|++.||++||||||++.+-
T Consensus 119 R~~ft~~ql~~Le~~F~~~--~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 119 RFKWGPASQQILFQAYERQ--KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp CCCCCHHHHHHHHHHHHHH--CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CcccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 3679999999999999994 89999999999999991 11 11245556779999999999998763
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.10 E-value=4.4e-11 Score=92.56 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=50.0
Q ss_pred cCCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
-.-|+.+++..|+.-|.++ .+.||+.++++.||..+|||+ +||++||||||++.+
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~----------~QV~~WF~NrR~R~k 64 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLST----------LQVCNWFINARRRLL 64 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCH----------HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhh
Confidence 3568999999999999873 459999999999999999999 999999999999876
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.07 E-value=7.7e-11 Score=104.19 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCC--------Ccc---cCCCCcCCcchhhhhhhcccccc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSF--------SAS---RAARPAITWLQVQSWFRDKQKKS 70 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~l--------S~~---r~Gk~~v~~~QVk~WFQNRR~k~ 70 (245)
+.||++|+.+||+.|.. ++||+...|++||+.+|. ++. .-|...|++.||++||||||++-
T Consensus 147 ~~ft~~ql~~Le~~F~~--~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 147 FKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 56999999999999999 699999999999999983 221 23666788999999999999864
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=87.21 Aligned_cols=48 Identities=8% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 12 LAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 12 ~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
.+|+..||+.|.. |.+|+.+++++||+++||+. ++|++||||||+...
T Consensus 14 k~ql~~Lk~yF~~--n~~Ps~eei~~LA~~lgL~~----------~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAM--NMEPNSDELLKISIAVGLPQ----------EFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHHHHHHhhcccccc
Confidence 5789999999999 69999999999999999988 999999999998654
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.67 E-value=6.9e-09 Score=92.66 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 26 GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 26 ~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
.++||++..|++||.++||++ +||++||||||+|+|
T Consensus 386 ~~~yp~~~~~~~la~~~~l~~----------~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 386 RKQSLNSKEKEEVAKKCGITP----------LQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHCCCC
T ss_pred cCCCcCHHHHHHHHHHHCcCH----------HHhhHhhhhcccccC
Confidence 479999999999999999999 999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.29 E-value=8.1e-08 Score=63.58 Aligned_cols=18 Identities=22% Similarity=0.624 Sum_probs=15.8
Q ss_pred chhhhhhhcccccccccc
Q 026004 57 LQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 57 ~QVk~WFQNRR~k~k~k~ 74 (245)
.||++||||||+|||.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 489999999999998655
No 79
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=97.27 E-value=0.0032 Score=51.32 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=71.7
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccccCCCccccccccccCCceEEEeee
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQRSIPLEQSECVKVNVGDLVLCYQE 192 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ple~~eC~~v~~G~~v~cf~~ 192 (245)
+|+-|-|. ++||||..-+ ..-++.+++|.|.+- -...++|.+. .+|+..-| ++. ..+..||.|-+|..
T Consensus 5 ~~~VEV~~-~~G~~y~a~V------~~v~~d~~~V~f~n~-w~~~~~vp~~-~vRlpP~~--~~~-~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFV------KDVHEDSVTIFFENN-WQSERQIPFG-DVRLPPPA--DYN-KEITEGDEVEVYSR 72 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEE------EEECSSEEEEEETTC-TTCCEEEEGG-GEECCCCC-------CCCTTCEEEEEEC
T ss_pred ccEEEEec-CCCCEEEEEE------EEEeCCcEEEEEccc-cCcceEechh-hEEcCCCc--ccc-cCCCCCCEEEEEec
Confidence 45666677 6799999553 223455799999762 2235677776 77875554 344 47999999999887
Q ss_pred cCC--ceeEEeeEEeeeeecccCCCCceeEEEEEEcc-CCc-cccccccce
Q 026004 193 RED--QAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDH-DFS-EEQVKVERL 239 (245)
Q Consensus 193 ~~~--~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h-~~~-ee~v~~~~i 239 (245)
.++ -.-||=|.|..++ .+.+.|.|+. +.+ .|+|.+++|
T Consensus 73 ~~d~ep~gWw~a~I~~~k---------g~f~~V~y~~~~~~~~EiV~~~rl 114 (128)
T 3h8z_A 73 ANEQEPCGWWLARVRMMK---------GDFYVIEYAACDATYNEIVTLERL 114 (128)
T ss_dssp C---CCCEEEEEEEEEEE---------TTEEEEEETTC----CEEECGGGE
T ss_pred CCCCCcCccEEEEEEEee---------CCEEEEEEcCCCCCcceEEehhhe
Confidence 543 4469999999987 2478888776 333 688898888
No 80
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=96.25 E-value=0.0062 Score=45.56 Aligned_cols=55 Identities=18% Similarity=0.413 Sum_probs=38.3
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc----ccccccccCCCccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN----VKTAVRQRSIPLEQSECV 179 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~----~~~~~R~rS~ple~~eC~ 179 (245)
|+-+.||.||-+.+. + +. +...+.|.|..||+.+.--.+ +...| .++|.|+.+|.
T Consensus 36 a~~~~d~~wyRA~I~-~--~~--~~~~~~V~fvDyGn~e~v~~~~lr~l~~~f--~~lP~qA~~Cs 94 (94)
T 3fdr_A 36 APLPTNGSWYRARVL-G--TL--ENGNLDLYFVDFGDNGDCPLKDLRALRSDF--LSLPFQAIECS 94 (94)
T ss_dssp EEETTTTEEEEEEEE-E--EC--TTSCEEEEETTTCCEEEECGGGCEECCGGG--GCSCCCCCCC-
T ss_pred EEECCCCeEEEEEEE-E--EC--CCCeEEEEEEcCCCeEEEEHHHhhhcCHHH--hcCCcceEEeC
Confidence 566889999999863 1 22 223699999999997643222 34444 58999999995
No 81
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=95.98 E-value=0.024 Score=43.11 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=36.9
Q ss_pred ceeEeecccCCCceeeeeecceeeeee-cCceeEEEEecCCCCCccccccccc-ccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTC-AGELEVRVRFSGFNNTEDEWVNVKT-AVR 167 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~-~g~~el~Vrf~gF~~eeDEw~~~~~-~~R 167 (245)
.|-.||.... +.||.+-+. ++. .| ..|+|||-|+....|||+++.. +++
T Consensus 23 GmkLEA~D~~-~~~~~a~i~----~v~~~~-~~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 23 GARLEALDYL-QKWYPSRIE----KIDYEE-GKMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp SCEEEEECTT-SCEEEEEEE----EEETTT-TEEEEEESSSTTTEEEEEETTSCCEE
T ss_pred CCEEEEEcCC-CCeeEEEEE----EEeccC-CEEEEEECCCCCcccEEeeCCCCcEe
Confidence 4778888655 589987754 233 45 4899999999999999999764 344
No 82
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.039 Score=42.54 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccc
Q 026004 122 KDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQ 168 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~ 168 (245)
.||-||...+ |.=|. ..|..+..|||.||..--||||..- |+..
T Consensus 34 ~~~~~y~AkI-l~ir~-~~~~~~YyVHY~g~NkRlDEWV~~~-rl~l 77 (92)
T 2ro0_A 34 KNDEERLAEI-LSINT-RKAPPKFYVHYVNYNKRLDEWITTD-RINL 77 (92)
T ss_dssp ETTEEEEEEE-EEEEC-SSSSCEEEEEETTSCTTSCEEEEGG-GEET
T ss_pred ECCEEEEEEE-EEEEE-cCCCcEEEEEeCCcCcccccccCHh-Hccc
Confidence 4999999986 44343 3567899999999999999999965 4543
No 83
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=94.92 E-value=0.16 Score=44.84 Aligned_cols=92 Identities=16% Similarity=0.310 Sum_probs=62.5
Q ss_pred eecccCCCceeeeeecceeeeee-----cCceeEEEEecCCCCCccccccccccccccCCCccccccccccCCceEEEee
Q 026004 117 EARSSKDDAWYDVASFLTYRVTC-----AGELEVRVRFSGFNNTEDEWVNVKTAVRQRSIPLEQSECVKVNVGDLVLCYQ 191 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~-----~g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ple~~eC~~v~~G~~v~cf~ 191 (245)
+||-...||||...+--=.|... +-+.-+.|.|..|.+..--=+..+ .+|+|+.. ...=..|.+|..|.+.-
T Consensus 10 d~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~-~irprar~--~~~~~~l~~g~~vm~ny 86 (226)
T 3ask_A 10 DARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSR-DVRARART--IIKWQDLEVGQVVMLNY 86 (226)
T ss_dssp EEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGG-GEEECCCC--BCCGGGCCTTCEEEEEE
T ss_pred EeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccc-cccccccc--cCCccccccCcEEEEec
Confidence 67888999999877532112110 233567899999866555444544 57777755 44556789999999633
Q ss_pred ---ecCCceeEEeeEEeeeeecc
Q 026004 192 ---EREDQAVYCDAHVLDIQRRV 211 (245)
Q Consensus 192 ---~~~~~~~yyDA~V~~v~r~~ 211 (245)
.-.+...||||+|..+.-.+
T Consensus 87 n~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 87 NPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp CTTSTTSCCEEEEEEEEEEEECS
T ss_pred ccCCccccCceeehhhhhhhhcc
Confidence 34567899999999887543
No 84
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.54 E-value=0.031 Score=42.76 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=35.7
Q ss_pred CCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccccCC
Q 026004 122 KDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQRSI 171 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ 171 (245)
.++-||...+ |.-|. ..|+.+..|||.||..--||||..- +++..++
T Consensus 25 ~~~~~y~AkI-l~i~~-~~~~~~YyVHY~g~NkRlDEWV~~~-rl~~~~~ 71 (87)
T 2eko_A 25 NEDEWPLAEI-LSVKD-ISGRKLFYVHYIDFNRRLDEWVTHE-RLDLKKI 71 (87)
T ss_dssp CCEECCEEEE-EEECC-SSSCCCEEEEECSSCSCCCEEECTT-TBCGGGC
T ss_pred CCCeEEEEEE-EEEEE-cCCCcEEEEEeCCCCcccccccCHh-Hcccccc
Confidence 5889998875 44333 3466799999999999999999975 5555443
No 85
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=94.25 E-value=0.041 Score=37.47 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=26.5
Q ss_pred eecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcc
Q 026004 117 EARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTED 157 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeD 157 (245)
-|+-+.||.||...+.- +..++ .++.|.|.+||+.|.
T Consensus 9 ~A~~s~Dg~wYrA~I~~---i~~~~-~~~~V~fvDYGn~e~ 45 (54)
T 3s6w_A 9 FALYWEDNKFYRAEVEA---LHSSG-MTAVVKFIDYGNYEE 45 (54)
T ss_dssp EEEETTTTEEEEEEEEE---C--CC-SEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEEEEE---EeCCC-CEEEEEEEccCCeEE
Confidence 36778999999998421 22233 479999999999754
No 86
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=93.82 E-value=0.067 Score=40.03 Aligned_cols=49 Identities=27% Similarity=0.542 Sum_probs=40.7
Q ss_pred cceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 112 KELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 112 ~~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
..+.|+ ..++-.|.|..-|.+|+...|..+.+|+..||+.+++-|-+..
T Consensus 12 E~~~~~---~~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~ 60 (81)
T 4hae_A 12 ENLYFQ---GASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEH 60 (81)
T ss_dssp CCEEEE---CTTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGG
T ss_pred cccccc---CCCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHH
Confidence 345553 3456789999999999988899999999999999999998744
No 87
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=93.75 E-value=0.19 Score=35.50 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=39.0
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCcccccccccee
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLC 240 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic 240 (245)
..++||.+++.- . ++..||.|+|.+|.... -.+.|.|..=.+.+.|++.+|-
T Consensus 8 ~~~vGd~c~A~~-s-~Dg~wYrA~I~~v~~~~-------~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 8 SWKVGDKCMAVW-S-EDGQCYEAEIEEIDEEN-------GTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp CCCTTCEEEEEC-T-TTSSEEEEEEEEEETTT-------TEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCEEEEEE-C-CCCCEEEEEEEEEcCCC-------CEEEEEEEecCCEEEEeHHHcE
Confidence 568999877533 2 24489999999998421 1568999988888889999883
No 88
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=93.67 E-value=0.097 Score=38.81 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccccCC
Q 026004 122 KDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQRSI 171 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ 171 (245)
+++-||...+ |.=+ ...|..+..|+|.||..--||||..- |++..+.
T Consensus 20 k~~~~y~AkI-l~i~-~~~~~~~Y~VHY~gwnkr~DEWV~~~-ri~~~~~ 66 (76)
T 2lcc_A 20 KTQKIYEASI-KSTE-IDDGEVLYLVHYYGWNVRYDEWVKAD-RIIWPLD 66 (76)
T ss_dssp TEEEEEEEEE-EEEE-EETTEEEEEEEETTSCCSSCEEEEGG-GEECSSC
T ss_pred CCCCEEEEEE-EEEE-ccCCceEEEEEeCCcCCCceEecChh-hcccccc
Confidence 5578999886 4433 24577789999999999999999965 4544433
No 89
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=93.39 E-value=0.089 Score=38.83 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=31.0
Q ss_pred eecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccccCCCcc
Q 026004 117 EARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQRSIPLE 174 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ple 174 (245)
=|+-+.||.||...+.- +..+| ..+.|.|.+||+.+. +++. ..|.+|.+
T Consensus 25 ~A~ys~Dg~wYRA~I~~---i~~~~-~~~~V~fvDYGN~e~--V~~~---~Lr~l~~~ 73 (77)
T 3pnw_C 25 FALYWEDNKFYRAEVEA---LHSSG-MTAVVKFIDYGNYEE--VLLS---NIKPIQTE 73 (77)
T ss_dssp EEEETTTTEEEEEEEEE---ECTTS-SEEEEEETTTCCEEE--EEGG---GEECC---
T ss_pred EEEECCCCCEEEEEEEE---EeCCC-CEEEEEEEcCCCeEE--EeHH---HeEECChh
Confidence 36778999999998531 22233 379999999999654 5544 33445544
No 90
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=93.39 E-value=0.21 Score=36.75 Aligned_cols=64 Identities=20% Similarity=0.086 Sum_probs=41.4
Q ss_pred Ccccccc----ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeeccC
Q 026004 172 PLEQSEC----VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRPT 244 (245)
Q Consensus 172 ple~~eC----~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp~ 244 (245)
+|+++.+ ...++||.+++.- .. +..||-|+|.+|.... =.+.|.|..=.+.+.|++.+|.--|.
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~y-s~-Dg~wYRA~I~~i~~~~-------~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALY-WE-DNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEE-TT-TTEEEEEEEEEECTTS-------SEEEEEETTTCCEEEEEGGGEECC--
T ss_pred ccccccchhhcCCCCcCCEEEEEE-CC-CCCEEEEEEEEEeCCC-------CEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 4555555 4589999877633 33 4489999999997421 24678898888888899999865543
No 91
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=93.29 E-value=0.075 Score=40.74 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=38.8
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc----ccccccccCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN----VKTAVRQRSIPLEQSECVK 180 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~----~~~~~R~rS~ple~~eC~~ 180 (245)
|+-+.||.||-+.+.- +. +...+.|.|..||+.+.--.+ +... ..++|.|+.+|..
T Consensus 41 a~~~~d~~wyRA~V~~---~~--~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~--f~~lP~qA~~c~L 100 (110)
T 2diq_A 41 APLPTNGSWYRARVLG---TL--ENGNLDLYFVDFGDNGDCPLKDLRALRSD--FLSLPFQAIECSL 100 (110)
T ss_dssp ECCTTTCSCEEEEECC---CC--SSSCEEEEETTTCCEEEECGGGCEECCHH--HHSSCCSSCCSCS
T ss_pred EEECCCCeEEEEEEEE---EC--CCCeEEEEEEeCCCeEEEehHHhhcCcHH--HhCCCcceEEEEE
Confidence 5667899999998531 22 224699999999998643222 2222 3579999999975
No 92
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.18 Score=39.08 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=34.3
Q ss_pred CCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccccccc
Q 026004 122 KDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVR 167 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R 167 (245)
.||.||...+ |.=|. ..|..+..|+|.||..--||||..- |+.
T Consensus 36 ~~~~~yeAeI-l~ir~-~~g~~~YYVHY~g~NkRlDEWV~~~-RI~ 78 (94)
T 2rnz_A 36 KNDEERLAEI-LSINT-RKAPPKFYVHYVNYNKRLDEWITTD-RIN 78 (94)
T ss_dssp CSSCEEEEEE-EEEEC-SSSSCEEEEECTTSCSTTCEEEETT-TBC
T ss_pred ECCEEEEEEE-EEEEE-cCCCcEEEEEeCCcCcccccccCHH-Hcc
Confidence 5999999886 44333 3577899999999999999999965 444
No 93
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=93.12 E-value=0.062 Score=37.33 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=28.3
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|+-+.||.||...+.- +...+ ..+.|.|.+||+.+ -+++.
T Consensus 12 A~~s~Dg~wYrA~I~~---i~~~~-~~~~V~f~DYGn~e--~v~~~ 51 (59)
T 1mhn_A 12 AIWSEDGCIYPATIAS---IDFKR-ETCVVVYTGYGNRE--EQNLS 51 (59)
T ss_dssp EECTTTSCEEEEEEEE---EETTT-TEEEEEETTTTEEE--EEEGG
T ss_pred EEECCCCCEEEEEEEE---EcCCC-CEEEEEEEcCCCEE--EEcHH
Confidence 6778899999988531 22222 47999999999864 45544
No 94
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=93.07 E-value=0.18 Score=39.10 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCceeeeeecceeeeeec--CceeEEEEecCCCCCccccccc
Q 026004 123 DDAWYDVASFLTYRVTCA--GELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~~~--g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
||.||.+.+ |.=|.... |..+..|||.||..--||||..
T Consensus 27 dg~~yeAeI-l~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~ 67 (92)
T 2bud_A 27 DGTVHRGQV-LQSRTTENAAAPDEYYVHYVGLNRRLDGWVGR 67 (92)
T ss_dssp TSCEEEEEE-EEEECTTTCSSCCEEEEECSSSCTTTCEEEET
T ss_pred CCCEEEEEE-EEEeeccCCCCCcEEEEEeCCcccccccccCH
Confidence 999999986 44443332 5679999999999999999984
No 95
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=93.03 E-value=0.079 Score=43.03 Aligned_cols=44 Identities=32% Similarity=0.604 Sum_probs=33.2
Q ss_pred CCceeeeeecceeeee-ecCceeEEEEecCCCCCccccccccccccc
Q 026004 123 DDAWYDVASFLTYRVT-CAGELEVRVRFSGFNNTEDEWVNVKTAVRQ 168 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~-~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~ 168 (245)
||-||...+ |.=|.. ..|..+.+|||.||..--||||..- |++.
T Consensus 25 d~~~y~AkI-l~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~-ri~~ 69 (133)
T 1wgs_A 25 DSTWHSAEV-IQSRVNDQEGREEFYVHYVGFNRRLDEWVDKN-RLAL 69 (133)
T ss_dssp TTEEEEEEE-EEEEEETTTTEEEEEEECTTTCSSCCEEECTT-TSCC
T ss_pred CCCEEEEEE-EEEEeccCCCceEEEEeccCcCCCceeecChh-hccc
Confidence 899999885 332221 2477899999999999999999964 5543
No 96
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=92.74 E-value=0.3 Score=33.78 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=39.6
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
..++||.+++.- .. +..||.|+|.+|.... =.+.|.|..=.+.|.|++.+|.--|
T Consensus 3 ~~~~G~~c~A~~-s~-Dg~wYrA~I~~i~~~~-------~~~~V~f~DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIW-SE-DGCIYPATIASIDFKR-------ETCVVVYTGYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEEC-TT-TSCEEEEEEEEEETTT-------TEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEE-CC-CCCEEEEEEEEEcCCC-------CEEEEEEEcCCCEEEEcHHHeeCCC
Confidence 578999777533 22 3489999999996321 2578999887788899998885433
No 97
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.71 E-value=0.2 Score=38.15 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=39.6
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceee
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCC 241 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~ 241 (245)
..++||.+|+.- .++..||.|+|..|... . =.+.|.|..=.+.|.|++.+|--
T Consensus 10 ~~kvGd~C~A~y--s~Dg~wYrA~I~~i~~~---~----~~~~V~fiDYGN~E~V~~~~Lrp 62 (88)
T 1g5v_A 10 QWKVGDKCSAIW--SEDGCIYPATIASIDFK---R----ETCVVVYTGYGNREEQNLSDLLS 62 (88)
T ss_dssp CCCSSCEEEEEC--TTTCCEEEEEEEEEETT---T----TEEEEEETTTCCEEEEEGGGCBC
T ss_pred CCCCCCEEEEEE--CCCCCEEEEEEEEecCC---C----CEEEEEEecCCCEEEEcHHHccc
Confidence 578999877643 23458999999999642 1 24689998888888899988743
No 98
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=92.67 E-value=0.59 Score=39.57 Aligned_cols=86 Identities=20% Similarity=0.397 Sum_probs=59.5
Q ss_pred eecccCCCceeeeeecceeeeeec-----------------CceeEEEEecCCCCCccccccccccccccCCCccccccc
Q 026004 117 EARSSKDDAWYDVASFLTYRVTCA-----------------GELEVRVRFSGFNNTEDEWVNVKTAVRQRSIPLEQSECV 179 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~~-----------------g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ple~~eC~ 179 (245)
.||-..-|||+.... .+++.. .+.-..|.|.+|.+..--=+.++ .+|+|..-+= .=+
T Consensus 18 DarD~~~GAWFEA~I---v~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~-~iRpRARt~l--~w~ 91 (161)
T 3db3_A 18 DARDTNMGAWFEAQV---VRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSR-DVRARARTII--KWQ 91 (161)
T ss_dssp EEECTTTCCEEEEEE---EEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGG-GEECCCCCBC--CGG
T ss_pred eeeccCCCcceEEEE---EEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchh-ccccceEEec--cHH
Confidence 578888999987653 123331 33567899998766554444453 7888876543 346
Q ss_pred cccCCceEEE---eeecCCceeEEeeEEeeee
Q 026004 180 KVNVGDLVLC---YQEREDQAVYCDAHVLDIQ 208 (245)
Q Consensus 180 ~v~~G~~v~c---f~~~~~~~~yyDA~V~~v~ 208 (245)
.|.+|+.|.. ..+-++--.||||.|..+.
T Consensus 92 ~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~ 123 (161)
T 3db3_A 92 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKR 123 (161)
T ss_dssp GCCTTCEEEEEECSSSTTSCCEEEEEEEEEEE
T ss_pred HCCcCcEEEEecCCCCccccceeEEEEEeeeh
Confidence 7899999994 3345577799999999863
No 99
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=92.63 E-value=0.14 Score=40.22 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=30.2
Q ss_pred CCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc
Q 026004 123 DDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN 161 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~ 161 (245)
++-||+..+- .=+ ...|..+..|+|.||..--||||.
T Consensus 34 ~~~~YeAkIl-~v~-~~~~~~~Y~VHY~GwNkR~DEWV~ 70 (102)
T 2f5k_A 34 GPLLYEAKCV-KVA-IKDKQVKYFIHYSGWNKNWDEWVP 70 (102)
T ss_dssp SSSEEEEEEE-EEE-EETTEEEEEEEETTSCGGGCEEEE
T ss_pred CCEEEEEEEE-EEE-EcCCCcEEEEEeCCcCCCceeecc
Confidence 7999998853 222 245778999999999999999999
No 100
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.62 E-value=0.084 Score=40.21 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred eecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccc
Q 026004 117 EARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQ 168 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~ 168 (245)
=|+-+.||.||...+-- +...+ ..+.|.|.+||+.|. |++. .+|+
T Consensus 18 ~A~ys~Dg~wYrA~I~~---i~~~~-~~~~V~fiDYGN~E~--V~~~-~Lrp 62 (88)
T 1g5v_A 18 SAIWSEDGCIYPATIAS---IDFKR-ETCVVVYTGYGNREE--QNLS-DLLS 62 (88)
T ss_dssp EEECTTTCCEEEEEEEE---EETTT-TEEEEEETTTCCEEE--EEGG-GCBC
T ss_pred EEEECCCCCEEEEEEEE---ecCCC-CEEEEEEecCCCEEE--EcHH-Hccc
Confidence 36778999999988531 22222 479999999999875 4443 4444
No 101
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.60 E-value=0.23 Score=36.66 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=39.4
Q ss_pred ccccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccce
Q 026004 177 ECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERL 239 (245)
Q Consensus 177 eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~i 239 (245)
.....++||.|++--. +.+||.|.|.+|... . ++.|.|..+ +.+.|+..+|
T Consensus 6 ~~~~~kvGd~clA~ws---Dg~~Y~A~I~~v~~~----~----~~~V~f~Dy-n~e~v~~~~l 56 (74)
T 2equ_A 6 SGFDFKAGEEVLARWT---DCRYYPAKIEAINKE----G----TFTVQFYDG-VIRCLKRMHI 56 (74)
T ss_dssp SCCCCCTTCEEEEECS---SSSEEEEEEEEESTT----S----SEEEEETTS-CEEEECGGGE
T ss_pred CCCCCCCCCEEEEECC---CCCEEEEEEEEECCC----C----EEEEEEecC-CeEEecHHHC
Confidence 3567899999998543 458999999999632 2 358999988 8888887776
No 102
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=92.52 E-value=0.3 Score=38.94 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=39.0
Q ss_pred cccCCceEEEeeecC-CceeEEeeEEeeeeecccCCCCceeEEEEEEccCCc--cccccccce
Q 026004 180 KVNVGDLVLCYQERE-DQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFS--EEQVKVERL 239 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~-~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~--ee~v~~~~i 239 (245)
+...|+.||||+-.. ..-+.|+|.|++|.-..=+...-.-.+.|-|.-=++ -|=|+-.+|
T Consensus 19 ~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl 81 (110)
T 3oa6_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred ccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh
Confidence 467899999998443 345779999999975543333334468888875553 233444443
No 103
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=92.43 E-value=0.079 Score=43.44 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=37.7
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccccc-ccccCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTA-VRQRSIPLEQSECVK 180 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~-~R~rS~ple~~eC~~ 180 (245)
|+-+.||.||-+.+. .+...| .+.|.|..||+.+. +-++|.- -...++|.++.+|..
T Consensus 56 A~~~~d~~wyRa~I~---~~~~~~--~~~V~fvDyGn~~~-v~~lr~l~~~f~~lP~qA~~c~L 113 (169)
T 3ntk_A 56 AQFPEDEVFYRAQIR---KVLDDG--KCEVHFIDFGNNAV-TQQFRQLPEELAKPARYSRHCEL 113 (169)
T ss_dssp EEETTTTEEEEEEEE---EECSTT--CEEEEETTTTEEEE-ESCEECCCHHHHSSCCSSEEEEE
T ss_pred EEECCCCcEEEEEEE---EECCCC--EEEEEEEecCCeEE-hhhhhccCHHHhhCCceeEEEEE
Confidence 455789999999853 122233 69999999999876 3222210 012478999999875
No 104
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=92.19 E-value=0.12 Score=38.09 Aligned_cols=40 Identities=23% Similarity=0.466 Sum_probs=35.1
Q ss_pred CceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 124 DAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 124 ~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.--|.|..-|.||+...|..+.+|+..||+.+++-|-+..
T Consensus 19 ~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~ 58 (75)
T 2rsn_A 19 ADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQ 58 (75)
T ss_dssp GGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGG
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHH
Confidence 3458899999999988899999999999999999997643
No 105
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=92.12 E-value=0.21 Score=35.84 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=32.4
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.|-+||....+- ||...+. . +-..| ..|+|+|.|.....|+|+++.
T Consensus 16 GmkLEa~d~~~p-~~~AtV~-~--v~~~~-~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 16 GAQLEARDRLKN-WYPAHIE-D--IDYEE-GKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp TCEEEEECTTSC-EEEEEEE-E--EETTT-TEEEEEETTSCGGGCEEEETT
T ss_pred CCEEEEEECCCC-ccccEEE-E--EeccC-CEEEEEeCCCCCCCCEEEcCC
Confidence 477888876654 7754422 1 11144 479999999999999999865
No 106
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=91.82 E-value=0.11 Score=36.69 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=30.6
Q ss_pred eecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccc
Q 026004 117 EARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQ 168 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~ 168 (245)
-|+-+.||.||...+.- +..++ ..+.|.|.+||+.| .+++. .+|+
T Consensus 16 ~A~~s~Dg~wYrA~I~~---v~~~~-~~~~V~fvdYGn~e--~V~~~-~Lrp 60 (64)
T 4a4f_A 16 MAVWSEDGQCYEAEIEE---IDEEN-GTAAITFAGYGNAE--VTPLL-NLKP 60 (64)
T ss_dssp EEECTTTSSEEEEEEEE---EETTT-TEEEEEETTTTEEE--EEEGG-GEEC
T ss_pred EEEECCCCCEEEEEEEE---EcCCC-CEEEEEEEecCCEE--EEeHH-HcEe
Confidence 37878999999988531 22222 37999999999874 45544 4443
No 107
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=91.67 E-value=0.45 Score=32.18 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=35.9
Q ss_pred ccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccce
Q 026004 181 VNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERL 239 (245)
Q Consensus 181 v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~i 239 (245)
.++||.+++.- .. +..||-|+|.+|.... =.+.|.|..=.+.|.|++.+|
T Consensus 2 wk~G~~c~A~~-s~-Dg~wYrA~I~~i~~~~-------~~~~V~fvDYGn~e~v~~~~l 51 (54)
T 3s6w_A 2 WKPGDECFALY-WE-DNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNI 51 (54)
T ss_dssp CCTTCEEEEEE-TT-TTEEEEEEEEEC--CC-------SEEEEEETTTCCEEEEEGGGE
T ss_pred CCCCCEEEEEE-CC-CCCEEEEEEEEEeCCC-------CEEEEEEEccCCeEEEeHHHE
Confidence 36899888633 22 4489999999997421 245799988888888998887
No 108
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=91.57 E-value=0.34 Score=35.41 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=37.2
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccce
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERL 239 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~i 239 (245)
.....||.|+|-= .+-+||.|.|.+|... +++.|.|+. +..+.|...+|
T Consensus 5 ~~~~vGd~vmArW---~D~~yYpA~I~si~~~--------~~Y~V~F~d-G~~etvk~~~i 53 (67)
T 3p8d_A 5 SEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIHV 53 (67)
T ss_dssp CCCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGGE
T ss_pred cccccCCEEEEEc---CCCCEeeEEEEEECCC--------CeEEEEEeC-CceEEEeHHHc
Confidence 4678999999643 4569999999999843 579999999 65566655554
No 109
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=91.50 E-value=0.15 Score=37.54 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.8
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTED 157 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeD 157 (245)
|+-+.||.||...+.- +... ...+.|.|..||+.+.
T Consensus 18 A~~s~Dg~wYRA~I~~---i~~~-~~~~~V~fiDYGN~e~ 53 (78)
T 2d9t_A 18 ALYWEDNKFYRAEVEA---LHSS-GMTAVVKFTDYGNYEE 53 (78)
T ss_dssp EECTTTCCEEEEEEEE---ECSS-SSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEEEE---EeCC-CCEEEEEEEcCCCeEE
Confidence 6778899999998531 2222 2479999999999765
No 110
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=90.44 E-value=0.66 Score=34.00 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=42.5
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeeccC
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRPT 244 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp~ 244 (245)
...++|+++++.- . ++..||-|+|++|... .=++.|.|.+=.+.+.|++.+|..-|.
T Consensus 8 ~~~~~G~~c~A~~-s-~Dg~wYRA~I~~i~~~-------~~~~~V~fiDYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 8 KVWKPGDECFALY-W-EDNKFYRAEVEALHSS-------GMTAVVKFTDYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCTTCEEEEEC-T-TTCCEEEEEEEEECSS-------SSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred cCCCcCCEEEEEE-C-CCCCEEEEEEEEEeCC-------CCEEEEEEEcCCCeEEEcHHHeEeCCH
Confidence 4578999988632 2 2448999999999632 126789999888889999999876554
No 111
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=90.35 E-value=0.29 Score=38.69 Aligned_cols=44 Identities=25% Similarity=0.544 Sum_probs=36.1
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN 161 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~ 161 (245)
-|-+||...++-..+-|++-.. ..| ..|+|+|.|+.+..|.|++
T Consensus 17 GMKLEAvD~~~p~~icvATV~~----v~g-~rl~v~fDGw~~~~D~W~~ 60 (107)
T 1wjq_A 17 KMKLEVVDKRNPMFIRVATVAD----TDD-HRVKVHFDGWNNCYDYWID 60 (107)
T ss_dssp SCEEEEECTTCTTCEEEEEEEE----ECS-SCEEEECSSSCGGGCEEEC
T ss_pred CCEEEEEcCCCCCcEEeEEEEE----ecC-CEEEEEeCCCCCcCCEEEE
Confidence 4789999999988877876432 234 4799999999999999988
No 112
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=90.07 E-value=0.53 Score=36.03 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=35.4
Q ss_pred cccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccce
Q 026004 178 CVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERL 239 (245)
Q Consensus 178 C~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~i 239 (245)
-.....||.|+|-= .+-+||.|.|.+|..- ++|+|.|+. +..+.|+...|
T Consensus 19 ~~~f~vGd~VlArW---~D~~yYPAkI~sV~~~--------~~YtV~F~D-G~~etvk~~~I 68 (85)
T 3qii_A 19 SSEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIHV 68 (85)
T ss_dssp --CCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGGE
T ss_pred CcccccCCEEEEEe---CCCCEeeEEEEEECCC--------CeEEEEEeC-CCeEEecHHHc
Confidence 35788999999533 3558999999999844 579999999 44444444433
No 113
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.70 E-value=0.3 Score=36.26 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcc
Q 026004 12 LAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDK 66 (245)
Q Consensus 12 ~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNR 66 (245)
+.-.+-|+.-|.++ +.|..+..++|..+-.+|. .||+.||--|
T Consensus 15 p~~~e~L~~Yy~~h--k~L~EeDl~~L~~kskms~----------qqvkdwFa~k 57 (70)
T 2ys9_A 15 PPDIQPLERYWAAH--QQLRETDIPQLSQASRLST----------QQVLDWFDSR 57 (70)
T ss_dssp CCCCHHHHHHHHHT--CCCCTTHHHHHHHHTTCCH----------HHHHHHHHHH
T ss_pred CCcchHHHHHHHHh--cccchhhHHHHHHHhCCCH----------HHHHHHHHhc
Confidence 33456789999997 7999999999999999998 9999999766
No 114
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=89.35 E-value=0.38 Score=40.13 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=38.6
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccc-----cccCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAV-----RQRSIPLEQSECVK 180 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~-----R~rS~ple~~eC~~ 180 (245)
|+.+.||.||-+.+. .+... ..+.|.|..||+.+ .++.. .+ ...++|.|+.+|..
T Consensus 74 a~~~~d~~wyRa~V~---~~~~~--~~~~V~~vDyG~~~--~v~~~-~l~~l~~~f~~lP~qA~~c~L 133 (201)
T 4b9w_A 74 AFFSGDGNWYRALVK---EILPS--GNVKVHFVDYGNVE--EVTTD-QLQAILPQFLLLPFQGMQCWL 133 (201)
T ss_dssp EEETTTTEEEEEEEE---EECTT--SCEEEEETTTCCEE--EECGG-GEEECCGGGGSSCBCCEEEEE
T ss_pred EEECCCCeEEEEEEE---EECCC--CeEEEEEEccCCEE--EEEHH-HhccChHhHcccchhhEEEEE
Confidence 677899999998852 12223 36999999999975 44422 22 23579999999986
No 115
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=88.93 E-value=0.07 Score=40.46 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=36.8
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccce
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERL 239 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~i 239 (245)
...++||.|++--. +..||.|.|..|... + ++.|.|+. .+.|.|++.+|
T Consensus 5 ~~~kvGd~clAkws---Dg~wY~A~I~~v~~~-----~---~y~V~F~D-Gn~E~V~~s~L 53 (81)
T 2ldm_A 5 SEFQINEQVLASWS---DSRFYPAKVTAVNKD-----G---TYTVKFYD-GVVQTVKHIHV 53 (81)
Confidence 45789999998333 458999999999631 1 67899988 67777777665
No 116
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=88.73 E-value=0.47 Score=40.35 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=38.5
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc------ccccccccCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN------VKTAVRQRSIPLEQSECVK 180 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~------~~~~~R~rS~ple~~eC~~ 180 (245)
|+-+.||.||-+.+. .+... .++.|.|..||+.+ .++ +... ..++|.|+.+|..
T Consensus 74 a~~~~d~~WyRa~V~---~~~~~--~~~~V~~vDyGn~~--~v~~~~l~~l~~~--f~~lP~qA~~c~L 133 (226)
T 4b9x_A 74 AFFSGDGNWYRALVK---EILPS--GNVKVHFVDYGNVE--EVTTDQLQAILPQ--FLLLPFQGMQCWL 133 (226)
T ss_dssp EEETTTTEEEEEEEE---EECSS--SEEEEECTTTCCEE--EEEGGGEECCCGG--GSSSCBCCEEEEE
T ss_pred EEECCCCeEEEEEEE---EECCC--CeEEEEEEecCCEE--EEEHHHhccChHH--HcccccceEEEEE
Confidence 667889999998852 12223 36999999999975 344 2333 3579999999986
No 117
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=88.00 E-value=0.41 Score=36.47 Aligned_cols=36 Identities=22% Similarity=0.593 Sum_probs=30.7
Q ss_pred eeeeecceeeee-ecCceeEEEEecCCCC-Cccccccc
Q 026004 127 YDVASFLTYRVT-CAGELEVRVRFSGFNN-TEDEWVNV 162 (245)
Q Consensus 127 YdV~~fl~~R~~-~~g~~el~Vrf~gF~~-eeDEw~~~ 162 (245)
|.|...|.||+. ..|..+.+|+..||++ +++-|-+.
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~ 68 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSE 68 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECG
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccH
Confidence 789999999987 4688999999999996 77789663
No 118
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=87.21 E-value=0.58 Score=32.54 Aligned_cols=36 Identities=31% Similarity=0.625 Sum_probs=31.7
Q ss_pred eeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 127 YDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 127 YdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|.|..-|.||+. .|..+..|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (59)
T 3fdt_A 4 YVVEKVLDRRVV-KGQVEYLLKWKGFSEEHNTWEPEK 39 (59)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEeCCCcccCCccchh
Confidence 788899999976 688999999999999999997643
No 119
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=87.14 E-value=0.61 Score=31.87 Aligned_cols=36 Identities=28% Similarity=0.578 Sum_probs=32.1
Q ss_pred eeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 127 YDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 127 YdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|.|..-|.||+. .|..+..|+..||+.+++-|.+..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVKWkgy~~~~~TWEp~~ 39 (55)
T 1pfb_A 4 YAAEKIIQKRVK-KGVVEYRVKWKGWNQRYNTWEPEV 39 (55)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEcCCCCccCcEeEHH
Confidence 789999999985 688999999999999999998754
No 120
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=86.53 E-value=2.4 Score=31.21 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=39.8
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCc--cccccccce
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFS--EEQVKVERL 239 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~--ee~v~~~~i 239 (245)
.+..|+.|+|+...+....+|+|.|++|... ...-.|.|-|.-=++ -|=|+..+|
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~-----~~~~~Y~VHY~gwnkr~DEWV~~~ri 61 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID-----DGEVLYLVHYYGWNVRYDEWVKADRI 61 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE-----TTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc-----CCceEEEEEeCCcCCCceEecChhhc
Confidence 5679999999987544458999999998753 234568899987664 244665555
No 121
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=86.31 E-value=0.59 Score=32.03 Aligned_cols=36 Identities=28% Similarity=0.636 Sum_probs=31.6
Q ss_pred eeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 127 YDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 127 YdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|.|..-|.||+. .|..+..|+..||+.+++-|-+..
T Consensus 3 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 38 (55)
T 3f2u_A 3 YVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEE 38 (55)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEEeCCCccCCeeEHH
Confidence 678888999986 688999999999999999997754
No 122
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=86.21 E-value=0.74 Score=31.40 Aligned_cols=36 Identities=22% Similarity=0.579 Sum_probs=31.7
Q ss_pred eeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 127 YDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 127 YdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|.|..-|.||+. .|..+..|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3h91_A 4 FAAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEE 39 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred eEEEEEEEEEEe-CCcEEEEEEEeCCCCcCCCeecHh
Confidence 788899999975 688999999999999999997644
No 123
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=85.99 E-value=0.94 Score=38.51 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=33.3
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc------ccccccccCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN------VKTAVRQRSIPLEQSECVK 180 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~------~~~~~R~rS~ple~~eC~~ 180 (245)
|+-+ ||.||-+.+.- +. .+ ..+.|.|..||+.+ +++ +...|...++|.++.+|..
T Consensus 74 a~~~-d~~wyRa~V~~---~~-~~-~~~~V~~vDyGn~~--~v~~~~lr~l~~~~~~~~lp~~a~~~~L 134 (246)
T 2hqx_A 74 AKFV-DGEWYRARVEK---VE-SP-AKIHVFYIDYGNRE--VLPSTRLGTLSPAFSTRVLPAQATEYAF 134 (246)
T ss_dssp EECT-TSCEEEEEEEE---EE-ET-TEEEEEETTTCCEE--EECGGGEECCCGGGSTTTSCCCC-----
T ss_pred EEcC-CCCEEEEEEEE---Ec-CC-CeEEEEEEeCCCeE--EEeHHHhhcCCHhHcCCCCchhhhhhhh
Confidence 4445 99999988531 22 23 37999999999975 333 3333433468999999953
No 124
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=85.82 E-value=0.79 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=31.7
Q ss_pred eeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 127 YDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 127 YdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|.|..-|.||+. .|..+..|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3i91_A 4 FAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEE 39 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCcEEEEEEEeCCCcccCcccchh
Confidence 788899999975 688999999999999999997644
No 125
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=85.66 E-value=1.7 Score=31.99 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=39.9
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
..+++|+++++.- .++..||-|.|++|... . .+.|.|.+=++.+.|++.+|..-|
T Consensus 26 ~~~~~G~~c~a~~--~~d~~wyRA~I~~~~~~----~----~~~V~fvDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEE--TTTTEEEEEEEEEECTT----S----CEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEcCCCeEEEEHHHhhhcC
Confidence 4678999887632 23458999999999621 2 356888877888889988886544
No 126
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=85.32 E-value=0.79 Score=33.30 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=33.4
Q ss_pred CCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 122 KDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.+...|.|..-|.+|+. .|..+..|+..||+.+++-|-+..
T Consensus 12 ~~~~ey~VEkIld~R~~-~g~~eYlVKWkGy~~~~~TWEp~e 52 (69)
T 1q3l_A 12 EEEEEYAVEKIIDRRVR-KGMVEYYLKWKGYPETENTWEPEN 52 (69)
T ss_dssp ----CEEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred cCCCcEEEEEEEEEEEE-CCeEEEEEEEcCCCcccCCccchH
Confidence 45668999999999985 688999999999999999998754
No 127
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=85.13 E-value=0.93 Score=36.45 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=37.2
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCC--Ccccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNN--TEDEWVNVK 163 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~--eeDEw~~~~ 163 (245)
-|-+||...++-..|=|++-.. +. | ..|+|||.|+.+ .+|-|+++.
T Consensus 15 GmKLEa~D~~~p~~~~vAtV~~---v~-g-~rl~l~~dG~~~~~~~D~W~~~~ 62 (127)
T 1wjr_A 15 GSLIELQDSQNPFQYWIVSVIE---NV-G-GRLRLRYVGLEDTESYDQWLFYL 62 (127)
T ss_dssp TCEEEEECSSCSSCEEEEECCC---EE-T-TEEEECBTTCSSCCSSCEEEETT
T ss_pred CCEeEEecCCCCCcEEEEEEee---ee-C-CEEEEEecCCCCCCCCCEeEeCC
Confidence 3788999999999999997654 22 4 379999999999 679999854
No 128
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=84.95 E-value=0.19 Score=38.05 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc
Q 026004 123 DDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN 161 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~ 161 (245)
++-||...+ |.=|. ..|..+..|||.||..--||||.
T Consensus 24 ~~~~y~AkI-l~i~~-~~~~~~YyVHY~GwNkR~DEWV~ 60 (85)
T 2lrq_A 24 GPLIYEAKV-LKTKP-DATPVEYYIHYAGWSKNWDEWVP 60 (85)
Confidence 567887764 22222 34667899999999999999998
No 129
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=84.17 E-value=0.81 Score=32.09 Aligned_cols=36 Identities=22% Similarity=0.623 Sum_probs=31.5
Q ss_pred eeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 127 YDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 127 YdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|.|..-|.||+. .|..+..|+..||+.+++-|-+..
T Consensus 5 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 40 (62)
T 3lwe_A 5 FEVEKILDMKTE-GGKVLYKVRWKGYTSDDDTWEPEI 40 (62)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEHH
T ss_pred EEEEEEEEEEEc-CCeEEEEEEEeCCCCcCCCeeeHh
Confidence 788899999974 788999999999999999997643
No 130
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=84.11 E-value=1.1 Score=32.88 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=33.8
Q ss_pred CCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 123 DDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
+..-|.|..-|.+|+ ..|..+..|+..||+.+++-|.+..
T Consensus 17 ~~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~nTWEP~e 56 (72)
T 1pdq_A 17 VDLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEV 56 (72)
T ss_dssp -CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCceEEEEEEEEEEE-eCCcEEEEEEECCCCCccCeecchH
Confidence 345689999999997 5688999999999999999998754
No 131
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=83.98 E-value=1 Score=36.98 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=36.2
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccccccc-----ccCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVR-----QRSIPLEQSECVK 180 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R-----~rS~ple~~eC~~ 180 (245)
|+-+.||.||-+.+.- + .+ ..+.|.|..||+.+- +++. .+| ..++|.++.+|+.
T Consensus 60 a~~~~d~~wyRa~V~~---v--~~-~~~~V~~vDyG~~~~--v~~~-~l~~l~~~~~~~p~~a~~~~L 118 (218)
T 2wac_A 60 AQFTLDNQWYRAKVER---V--QG-SNATVLYIDYGNKET--LPTN-RLAALPPAFSSEKPYATEYAL 118 (218)
T ss_dssp EECTTTCCEEEEEEEE---E--ET-TEEEEEETTTCCEEE--EEGG-GEEECCGGGSSSCCSEEEEEE
T ss_pred EEECCCCeEEEEEEEE---e--cC-CeEEEEEEecCCeEE--EchH-HcccCChhhccCCcceeEEEE
Confidence 4556799999988531 1 22 579999999999764 3322 222 2367888888864
No 132
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=83.27 E-value=0.53 Score=34.49 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=33.6
Q ss_pred ceeeeeecceeeeeecCceeEEEEecCCCCCccccccc
Q 026004 125 AWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 125 AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
.-|.|..-|.||+...|..+..|+..||..+++-|.+.
T Consensus 12 ~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~ 49 (78)
T 2dnt_A 12 ELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPE 49 (78)
T ss_dssp CSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEET
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecH
Confidence 45788999999988889999999999999999999764
No 133
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=82.07 E-value=1.3 Score=30.95 Aligned_cols=40 Identities=23% Similarity=0.520 Sum_probs=32.4
Q ss_pred CCceeeeeecceeeeeecCce-eEEEEecCCCCCcccccccc
Q 026004 123 DDAWYDVASFLTYRVTCAGEL-EVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~~~g~~-el~Vrf~gF~~eeDEw~~~~ 163 (245)
|..=|.|..-|.||+.. |.. +..|+..||+.+++-|-+..
T Consensus 4 ~~~ey~VE~Il~~r~~~-g~~~~YlVkWkGy~~~~~TWEp~~ 44 (61)
T 3g7l_A 4 DADVYEVEDILADRVNK-NGINEYYIKWAGYDWYDNTWEPEQ 44 (61)
T ss_dssp -CCEEEEEEEEEEEECT-TSCEEEEEEETTSCGGGCEEEEGG
T ss_pred CCcEEEEEEEEEEEEEC-CCEEEEEEEEeCCCCcCCceeeHh
Confidence 34458899999999875 555 99999999999999997644
No 134
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=81.98 E-value=2.9 Score=32.65 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=37.2
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCc--cccccccce
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFS--EEQVKVERL 239 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~--ee~v~~~~i 239 (245)
.+..|+.|+|+.. -.+|+|.|++|... ...-.|.|-|.-=++ -|-|+-++|
T Consensus 22 ~f~vGekVl~~~~----~~~YeAkIl~v~~~-----~~~~~Y~VHY~GwNkR~DEWV~~~Rl 74 (102)
T 2f5k_A 22 KFQEGERVLCFHG----PLLYEAKCVKVAIK-----DKQVKYFIHYSGWNKNWDEWVPESRV 74 (102)
T ss_dssp SCCTTCEEEEESS----SSEEEEEEEEEEEE-----TTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred ccCCCCEEEEEEC----CEEEEEEEEEEEEc-----CCCcEEEEEeCCcCCCceeeccHhhc
Confidence 5789999999982 37899999999853 234569999987664 244555554
No 135
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=81.92 E-value=4.7 Score=31.50 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=37.7
Q ss_pred cccCCceEEEeee-cCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCc--cccccccce
Q 026004 180 KVNVGDLVLCYQE-REDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFS--EEQVKVERL 239 (245)
Q Consensus 180 ~v~~G~~v~cf~~-~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~--ee~v~~~~i 239 (245)
.+.+|+.|+||.. .....+.|+|.|++|.-..=....-.=.++|-|.-=++ -|-|+-.+|
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRi 81 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVL 81 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGE
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHc
Confidence 4679999999995 22234789999999986432222223357788864343 244555554
No 136
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=81.79 E-value=0.78 Score=32.89 Aligned_cols=40 Identities=18% Similarity=0.481 Sum_probs=34.1
Q ss_pred CceeeeeecceeeeeecCcee-EEEEecCCCCCcccccccc
Q 026004 124 DAWYDVASFLTYRVTCAGELE-VRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 124 ~AWYdV~~fl~~R~~~~g~~e-l~Vrf~gF~~eeDEw~~~~ 163 (245)
..=|.|..-|.||+...|..+ ..|+..||+.+++-|-+..
T Consensus 6 ~~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~e 46 (70)
T 1g6z_A 6 QEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPE 46 (70)
T ss_dssp SCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGG
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHH
Confidence 344689999999988768888 9999999999999998744
No 137
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=81.57 E-value=4.9 Score=31.94 Aligned_cols=59 Identities=17% Similarity=0.364 Sum_probs=38.0
Q ss_pred cccCCceEEEeeec-CCceeEEeeEEeeeeecccCCCCc-eeEEEEEEccCCc--cccccccce
Q 026004 180 KVNVGDLVLCYQER-EDQAVYCDAHVLDIQRRVHDTEGC-QCIFVVRYDHDFS--EEQVKVERL 239 (245)
Q Consensus 180 ~v~~G~~v~cf~~~-~~~~~yyDA~V~~v~r~~Hd~~~C-~C~F~Vr~~h~~~--ee~v~~~~i 239 (245)
.+..|+.|+||..+ ....++|+|.|++|....-+ .+- .-.++|.|.-=++ .|-|+-.+|
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~-~g~~~~~Y~VHY~GWn~~wDEWV~e~rl 81 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDE-KGRKIPEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECT-TCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCc-ccccceEEEEEECCCCcchhhccCHhhh
Confidence 47799999999653 23457899999999865422 121 2367788864332 244555554
No 138
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=80.52 E-value=3.3 Score=28.26 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=41.1
Q ss_pred CCcCCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcch---hhhhhh
Q 026004 5 DSWPDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQ---VQSWFR 64 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~Q---Vk~WFQ 64 (245)
.....+|++|+.+|.++|.. .++.+++......+-..++... +..+ |..+|+
T Consensus 3 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~--------~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 3 PKARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTY--------TKRETEAIMKEAR 60 (86)
T ss_dssp CCCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCC--------SHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCC--------CHHHHHHHHHHHH
Confidence 34567899999999999986 4568999999888888887643 5577 777776
No 139
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=79.87 E-value=2.9 Score=31.02 Aligned_cols=42 Identities=7% Similarity=0.260 Sum_probs=33.8
Q ss_pred CCcCCCCHHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHcCCCc
Q 026004 5 DSWPDFTLAEIKEMESMYKE----IGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~----~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+++..||++|+.+|.++|.. +++.+++......+-..++...
T Consensus 2 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~ 47 (158)
T 2jnf_A 2 GDVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQ 47 (158)
T ss_dssp CCSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSC
T ss_pred cchhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 45678999999999999985 4567899988888888777644
No 140
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=79.75 E-value=1.8 Score=31.27 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=34.3
Q ss_pred CCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 122 KDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.+..=|.|..-|.+|+. .|..+..|+..||+.+++-|.+..
T Consensus 9 ~~~~~y~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 49 (74)
T 2kvm_A 9 IGEQVFAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEE 49 (74)
T ss_dssp CCCCCCCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEETT
T ss_pred CCCccEEEEEEEEEEEe-CCcEEEEEEEcCCCCccCeEeeHH
Confidence 33446799999999975 688999999999999999998744
No 141
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=79.71 E-value=4.3 Score=30.18 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=38.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 4 EDSWPDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 4 ~~~~~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
+..+..||+.|+.+|.++|.. +++.+++......+-..++... +..+++..|++
T Consensus 6 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~~ 62 (156)
T 1wdc_B 6 SGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAP--------DDKELTAMLKE 62 (156)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCC--------CHHHHHHHHTT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHHh
Confidence 356778999999999999986 3578999988888888887654 44667777754
No 142
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=79.35 E-value=4.7 Score=29.75 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=36.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 3 DEDSWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 3 ~~~~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
...+...+|+.|+.+|.++|... ++.+++......+-..++...
T Consensus 10 ~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 56 (161)
T 3fwb_A 10 SGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFEL 56 (161)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 45677889999999999999864 567899988888888877544
No 143
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=79.26 E-value=1.9 Score=31.17 Aligned_cols=38 Identities=26% Similarity=0.565 Sum_probs=32.6
Q ss_pred ceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 125 AWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 125 AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.=|.|..-|.||+. .|..+..|+..||+.+++-|.+..
T Consensus 12 ~ey~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 49 (73)
T 1ap0_A 12 EEYVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEE 49 (73)
T ss_dssp SCCEEEEEEEEEEC-SSSEEEEEEEESSSSCCCEEEETT
T ss_pred ceEEEEEEEEEEEe-CCeEEEEEEECCCCCccCcEeeHH
Confidence 34689999999975 688999999999999999998743
No 144
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=79.16 E-value=4.6 Score=29.78 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=41.7
Q ss_pred cCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 7 WPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
...+|.+|+++|.++|... ++.+++..+...+-..+|... +..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~--------~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMP--------NEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCC--------CTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 4568999999999999875 778999999999888888644 5688888886
No 145
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.50 E-value=2.4 Score=30.74 Aligned_cols=39 Identities=21% Similarity=0.534 Sum_probs=33.1
Q ss_pred CceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 124 DAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 124 ~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
..=|.|..-|.||+. .|..+..|+..||+.+++-|.+..
T Consensus 8 ~~ey~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 46 (74)
T 2d9u_A 8 EQVFAAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEE 46 (74)
T ss_dssp CCCCCEEEEEEEEEE-TTEEEEEEEETTSCTTTCEEEEGG
T ss_pred CccEEEEEEEEEEEe-CCcEEEEEEECCCCCccCccccHH
Confidence 345789999999985 688999999999999999997643
No 146
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=77.59 E-value=1.5 Score=32.08 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=31.9
Q ss_pred eeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 126 WYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 126 WYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
=|.|..-|.+|+. .|..+..|+..||+.+++-|.+..
T Consensus 21 eyeVEkIld~r~~-~g~~~YlVKWkGy~~~~~TWEp~e 57 (73)
T 2k1b_A 21 VFAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEE 57 (73)
T ss_dssp CCCCSEEEEEEEE-TTEEEEEEECTTCCGGGCCEEETT
T ss_pred eEEEEEEEEEEEc-CCcEEEEEEECCCCcccCeecchH
Confidence 4688889999974 688999999999999999998754
No 147
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=77.57 E-value=5.3 Score=32.16 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=33.0
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCc
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFS 230 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ 230 (245)
.+..|+.|+|+.. +-.+|.|.|++|....- . ..-.|.|-|.-=+.
T Consensus 12 ~~~vGe~v~~~~~---d~~~y~AkIl~i~~~~~--~-~~~~YyVHY~gwNk 56 (133)
T 1wgs_A 12 TVEIGETYLCRRP---DSTWHSAEVIQSRVNDQ--E-GREEFYVHYVGFNR 56 (133)
T ss_dssp CCCTTSEEEEEET---TTEEEEEEEEEEEEETT--T-TEEEEEEECTTTCS
T ss_pred ccCCCCEEEEEeC---CCCEEEEEEEEEEeccC--C-CceEEEEeccCcCC
Confidence 4789999999984 23899999999886431 1 23578898885553
No 148
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=77.30 E-value=5.3 Score=33.76 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=49.0
Q ss_pred cccccccccCCceEEEeeecCCceeEEeeEEeeeeecccCC-----------CCceeEEEEEEccCCccccccccceeec
Q 026004 174 EQSECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDT-----------EGCQCIFVVRYDHDFSEEQVKVERLCCR 242 (245)
Q Consensus 174 e~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~-----------~~C~C~F~Vr~~h~~~ee~v~~~~ic~r 242 (245)
-+..+..-+.||+|=|-..+ .-.||-|+|+.|.|+.-.. .++.+.+-|.|+..|....|.+.-...|
T Consensus 4 ~d~~~glYKinelVDarD~~--~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iR 81 (161)
T 3db3_A 4 DETELGLYKVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVR 81 (161)
T ss_dssp CCBCCCSSCTTCEEEEECTT--TCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEE
T ss_pred cccccceEEecceeeeeccC--CCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccc
Confidence 35567778899999885543 3479999999999864311 3688999999999987766666555566
Q ss_pred cC
Q 026004 243 PT 244 (245)
Q Consensus 243 p~ 244 (245)
|.
T Consensus 82 pR 83 (161)
T 3db3_A 82 AR 83 (161)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 149
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=76.18 E-value=5 Score=32.40 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=31.4
Q ss_pred eEeecccCCC----ceeeeeecceeeeeecCceeEEEEecCCCCCcccccccccccccc
Q 026004 115 AFEARSSKDD----AWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQR 169 (245)
Q Consensus 115 efEArs~~D~----AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~r 169 (245)
+=|+-+..++ .||-..+- -..|+ -..|.|.||+...+||+++. |+|+.
T Consensus 66 ~VEV~~~~~d~ep~gWw~a~I~-----~~kg~-f~~V~y~~~~~~~~EiV~~~-rlR~~ 117 (128)
T 3h8z_A 66 EVEVYSRANEQEPCGWWLARVR-----MMKGD-FYVIEYAACDATYNEIVTLE-RLRPV 117 (128)
T ss_dssp EEEEEECC---CCCEEEEEEEE-----EEETT-EEEEEETTC----CEEECGG-GEEEC
T ss_pred EEEEEecCCCCCcCccEEEEEE-----EeeCC-EEEEEEcCCCCCcceEEehh-heEeC
Confidence 3345777777 89998852 23475 78999999999999999955 77764
No 150
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.00 E-value=5.8 Score=30.04 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=38.6
Q ss_pred ccccCCceEEEeeec-CCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCcc--ccccccce
Q 026004 179 VKVNVGDLVLCYQER-EDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSE--EQVKVERL 239 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~-~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~e--e~v~~~~i 239 (245)
..+..|+.|+|++.. ..+-.+|.|.|++|.... ..-.|.|-|..-+.. |=|+..+|
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~-----~~~~YyVHY~g~NkRlDEWV~~~rl 66 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS-----GRKLFYVHYIDFNRRLDEWVTHERL 66 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSS-----SCCCEEEEECSSCSCCCEEECTTTB
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC-----CCcEEEEEeCCCCcccccccCHhHc
Confidence 357899999999852 335589999999988532 223588999877752 33444444
No 151
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=75.88 E-value=2.2 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=32.6
Q ss_pred ceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 125 AWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 125 AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.=|.|..-|.||+. .|..+..|+..||..+++-|-+..
T Consensus 9 ~ey~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 46 (64)
T 2dnv_A 9 RVFAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEE 46 (64)
T ss_dssp CCCCCCCEEEEEES-SSSEEEEECCSSCCCSSCCEEETT
T ss_pred ceEEEEEEEEEEEe-CCcEEEEEEECCCCcccCCccCHh
Confidence 34689999999975 688999999999999999998743
No 152
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=75.27 E-value=6.9 Score=30.33 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=40.4
Q ss_pred cCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 7 WPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
-..+|++||++|.++|... ++.+++......+-.+++..+ +..+++..+.
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~--------~~~~~~~~~~ 59 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP--------PDDELNAMLK 59 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC--------CHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc--------cHHHHHHHHH
Confidence 3569999999999999863 678999999999999999876 4555665554
No 153
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=75.24 E-value=3.8 Score=31.04 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=39.0
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
.+.+|+++++.. .++..||-|.|+.+... . .+.|.|.+=.+.+.|++.+|..-|
T Consensus 32 ~~~~G~~c~a~~--~~d~~wyRA~V~~~~~~----~----~~~V~fvDyGn~e~v~~~~Lr~l~ 85 (110)
T 2diq_A 32 TVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALR 85 (110)
T ss_dssp CCCTTCEEEECC--TTTCSCEEEEECCCCSS----S----CEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEeCCCeEEEehHHhhcCc
Confidence 578999877532 22448999999998731 1 457888888888888888886544
No 154
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=74.91 E-value=6.7 Score=28.37 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 9 DFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
.||++|+.+++++|... ++.+++......+...++..+ +..++...|+
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~--------~~~~~~~l~~ 51 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNP--------TNAEINKILG 51 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 37899999999999753 567899988888888877654 4455666554
No 155
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=74.60 E-value=2.4 Score=33.66 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=34.2
Q ss_pred cCCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCc
Q 026004 7 WPDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
.+.||++||++|.++|.. .++.+++..+...+-..++..+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 467999999999999986 3678999998888888888765
No 156
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=73.95 E-value=8 Score=29.49 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=38.0
Q ss_pred cccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCcc--ccccccce
Q 026004 178 CVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSE--EQVKVERL 239 (245)
Q Consensus 178 C~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~e--e~v~~~~i 239 (245)
-..+..|..|+|++ +-.+|.|.|++|.... + .=.|.|-|..=+.. |=|+..+|
T Consensus 21 ~~~~~vG~kv~v~~----~~~~y~AkIl~ir~~~----~-~~~YyVHY~g~NkRlDEWV~~~rl 75 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK----NDEERLAEILSINTRK----A-PPKFYVHYVNYNKRLDEWITTDRI 75 (92)
T ss_dssp TTSCCTTCEEEEEE----TTEEEEEEEEEEECSS----S-SCEEEEEETTSCTTSCEEEEGGGE
T ss_pred cccccCCCEEEEEE----CCEEEEEEEEEEEEcC----C-CcEEEEEeCCcCcccccccCHhHc
Confidence 34688999999996 3389999999998542 2 24688999887752 44555554
No 157
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=73.72 E-value=2.7 Score=32.89 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=31.6
Q ss_pred cceeEeecccCCCceeeeeecceeeee----ecCceeEEEEecCCCCCccccccc
Q 026004 112 KELAFEARSSKDDAWYDVASFLTYRVT----CAGELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 112 ~~~efEArs~~D~AWYdV~~fl~~R~~----~~g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
..+-|.--.++.+-||+..+ |.=+.. ..|.....|+|.|+..--||||.-
T Consensus 25 kVLc~h~d~~kg~~lYeAKI-l~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~e 78 (101)
T 3m9q_A 25 IVLCYEPDKSKARVLYTSKV-LNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRA 78 (101)
T ss_dssp EEEEECCCTTSCCCEEEEEE-EEEEEEECTTSCEEEEEEEEETTSCGGGCEEECG
T ss_pred EEEEEecCCCCCCcceEeEE-EEEEecCCccccCceEEEEEeCCCCcCceeecCH
Confidence 34555322344567777653 221111 135578999999999999999983
No 158
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=73.62 E-value=2.7 Score=40.41 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=38.6
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccc----ccccccccccCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEW----VNVKTAVRQRSIPLEQSECVK 180 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw----~~~~~~~R~rS~ple~~eC~~ 180 (245)
|+.+ ||.||-+.+.- +.. ...+.|.|..||+.+.=- ..+...|....+|.|+.+|..
T Consensus 420 a~~~-d~~wyRa~I~~---v~~--~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~L 480 (570)
T 3bdl_A 420 AKFV-DGEWYRARVEK---VES--PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAF 480 (570)
T ss_dssp EECT-TSCEEEEEEEE---EEE--TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEE
T ss_pred EEEC-CCCEEEEEEEE---EcC--CCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEE
Confidence 3445 99999998642 222 236999999999986422 224444554456999999984
No 159
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=73.44 E-value=5.3 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 10 FTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
||++|+++|.++|... ++.+++......+...++..+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 40 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNP 40 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 7999999999999854 578999999888888887654
No 160
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=72.18 E-value=6.8 Score=31.12 Aligned_cols=49 Identities=31% Similarity=0.492 Sum_probs=32.4
Q ss_pred cceeEeecccCCCceeeeeecceeeeee--cC--ceeEEEEecCCCCCcccccc
Q 026004 112 KELAFEARSSKDDAWYDVASFLTYRVTC--AG--ELEVRVRFSGFNNTEDEWVN 161 (245)
Q Consensus 112 ~~~efEArs~~D~AWYdV~~fl~~R~~~--~g--~~el~Vrf~gF~~eeDEw~~ 161 (245)
..+-|..-.++..-||+..+ |.=+... +| .....|+|.|+..--||||.
T Consensus 25 kVLc~hgd~~k~~~lYeAKI-l~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~ 77 (110)
T 3m9p_A 25 KVLCFEPDPTKARVLYDAKI-VDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAA 77 (110)
T ss_dssp EEEEECSCTTSCCCEEEEEE-EEEEEEECTTCCEEEEEEEEETTSCGGGCEEEE
T ss_pred EEEEEcCCCCCCCCceeeEE-EEEEeccCcccccceEEEEEECCCCcchhhccC
Confidence 44566332334468999774 3222221 12 26899999999999999997
No 161
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=72.15 E-value=3.1 Score=34.10 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.3
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeee
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQR 209 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r 209 (245)
.+.+|+.||||+ + -++|+|.|+.|..
T Consensus 9 ~f~~gekvl~~h-g---~llYeAKVl~v~~ 34 (136)
T 2k3y_A 9 EFALGGRVLAFH-G---PLMYEAKILKIWD 34 (136)
T ss_dssp SCCTTSEEEEEC-S---SCEEEEEEEEEEE
T ss_pred ccCCCCEEEEEE-C---CeeEEEEEEEEEe
Confidence 577999999999 3 3689999999985
No 162
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=71.73 E-value=7.7 Score=29.09 Aligned_cols=52 Identities=8% Similarity=0.231 Sum_probs=40.3
Q ss_pred CcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCC-CcccCCCCcCCcchhhhhhhc
Q 026004 6 SWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSF-SASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~l-S~~r~Gk~~v~~~QVk~WFQN 65 (245)
.+..||+.|+.+|..+|... ++.+++......+...++. .. +..++...|++
T Consensus 15 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~--------~~~~~~~l~~~ 70 (166)
T 2mys_B 15 VFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNV--------KNEELDAMIKE 70 (166)
T ss_pred hhhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCC--------CHHHHHHHHHH
Confidence 45689999999999999863 5788999888888888876 43 44667766664
No 163
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=71.69 E-value=3.5 Score=29.24 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=28.5
Q ss_pred eeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 129 VASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 129 V~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|..-|.||+. .|..+..|+..||+.+++-|-+..
T Consensus 3 VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 36 (64)
T 3mts_A 3 VEYLCDYKKI-REQEYYLVKWRGYPDSESTWEPRQ 36 (64)
T ss_dssp EEEEEEEEEC-SSCEEEEEEETTSCGGGCEEEEGG
T ss_pred ceEEEEEEEe-CCeEEEEEEEecCCCcCCcEeEHH
Confidence 5566888875 688999999999999999997643
No 164
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=71.17 E-value=13 Score=26.88 Aligned_cols=39 Identities=10% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
..||++|+++|+++|... ++.+++......+...++...
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 44 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMP 44 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 579999999999999764 678999988888888887644
No 165
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=70.25 E-value=8 Score=26.56 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
..+|++++.+|..+|.. .++.+++......+-..++... +..+|...|+
T Consensus 12 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~l~~ 63 (90)
T 1avs_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNP--------TKEELDAIIE 63 (90)
T ss_dssp HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 35899999999999986 4567899988888888877543 4567777665
No 166
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=70.10 E-value=3.8 Score=32.02 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHH-----hCCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKE-----IGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~-----~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+.+|++||++|..+|.. ++..+++..+...+-+++|..+
T Consensus 1 sqLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 35899999999999974 3557899888888888888765
No 167
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=69.76 E-value=41 Score=29.45 Aligned_cols=92 Identities=14% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCCceeeeeecceeeeee--cCceeEEEEecCCCCCccccccccccccccCCCccccccccccCCceEEEeeecCCceeE
Q 026004 122 KDDAWYDVASFLTYRVTC--AGELEVRVRFSGFNNTEDEWVNVKTAVRQRSIPLEQSECVKVNVGDLVLCYQEREDQAVY 199 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~--~g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ple~~eC~~v~~G~~v~cf~~~~~~~~y 199 (245)
+++-||-..+.- +.. .| .+..|+|.+=+ +..+..+ ++=--..|.- ..|..|.+|++.-.+..+-.|
T Consensus 20 ~~~~W~rg~v~~---I~~~~~g-~~YkVkF~~~g---~~ivs~~-hiA~~~~p~~----~~l~vG~RVVA~~~~~~~~~f 87 (213)
T 3dlm_A 20 RTKTWHKGTLIA---IQTVGPG-KKYKVKFDNKG---KSLLSGN-HIAYDYHPPA----DKLYVGSRVVAKYKDGNQVWL 87 (213)
T ss_dssp TTSBEEEEEEEE---EEEETTE-EEEEEEESSSC---EEEECGG-GEEESSCCCG----GGCCTTCEEEEEEECSSCEEE
T ss_pred cCCcEEEEEEEE---EEECCCC-eEEEEEEcCCC---CEEeecc-eEEEecCCCc----cEEeEEEEEEEEecCCCCcce
Confidence 679999888421 222 35 57999998522 3445533 2211111111 258899999986666557789
Q ss_pred EeeEEeeeeecccCCCCceeEEEEEEccCCc
Q 026004 200 CDAHVLDIQRRVHDTEGCQCIFVVRYDHDFS 230 (245)
Q Consensus 200 yDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ 230 (245)
|=.+|.+.--..+-- +|+|.||.|-.
T Consensus 88 Y~GiVaE~p~~~N~~-----RyLVFFDDG~~ 113 (213)
T 3dlm_A 88 YAGIVAETPNVKNKL-----RFLIFFDDGYA 113 (213)
T ss_dssp EEEEEEECCCTTTTS-----CEEEEETTSCE
T ss_pred eeeEEEECCccCCCc-----eEEEEEeCCCc
Confidence 988888776544332 89999999964
No 168
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=69.60 E-value=8.9 Score=28.28 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=33.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHh---C-CCCCCHHHHHHHHHHcCCCc
Q 026004 5 DSWPDFTLAEIKEMESMYKEI---G-EASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~~---~-~~y~~~~~rq~LA~~f~lS~ 46 (245)
.....||+.|+.+|.++|... + +.+++......+...++...
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~ 52 (161)
T 1dtl_A 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNP 52 (161)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCC
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 345679999999999999874 4 57899988888888887543
No 169
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=69.09 E-value=14 Score=27.06 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=38.5
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccce
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERL 239 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~i 239 (245)
+...||.|++== +.+.+||-|+|.+|.-..+ .++|.|.. .+++.++..+|
T Consensus 9 ~~~vgd~VmaRW--~Gd~~yYparI~Si~s~~~-------~Y~V~fKd-gT~e~L~~kDI 58 (66)
T 2l8d_A 9 KYADGEVVMGRW--PGSVLYYEVQVTSYDDASH-------LYTVKYKD-GTELALKESDI 58 (66)
T ss_dssp SSCSSCEEEEEC--TTSSCEEEEEEEEEETTTT-------EEEEEETT-SCEEEEEGGGE
T ss_pred EeecCCEEEEEc--CCCccceEEEEEEeccCCc-------eEEEEecC-CCEEeechhcc
Confidence 456899999755 4467999999999994433 68999999 66666766665
No 170
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=69.02 E-value=5 Score=28.86 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCc
Q 026004 10 FTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+|++|+++++++|.. .++.+++..+...+-.+++++.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 43 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPS 43 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCH
Confidence 689999999999986 3578999988888877777765
No 171
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=68.94 E-value=7.6 Score=26.13 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=38.1
Q ss_pred CcCCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 6 SWPDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
....+|++++.+|.++|.. .++.+++......+-..++... +..++...|+
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~ 57 (85)
T 2ktg_A 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANP--------TKQKISEIVK 57 (85)
T ss_dssp CCCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCC--------CHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 3567899999999999986 3567888888887777776532 4466776665
No 172
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=68.12 E-value=9.7 Score=28.12 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
..+|++|+++|.++|... ++.+++......+...++..+
T Consensus 2 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 43 (148)
T 1exr_A 2 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP 43 (148)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 468999999999999863 567889888888888887654
No 173
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=67.85 E-value=8.9 Score=29.53 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=37.0
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCcc--ccccccce
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSE--EQVKVERL 239 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~e--e~v~~~~i 239 (245)
..+..|+.|+|+. +-.+|.|.|++|.... ..=.|.|-|..-+.. |=|+..+|
T Consensus 24 ~~~~vG~kv~v~~----~~~~yeAeIl~ir~~~-----g~~~YYVHY~g~NkRlDEWV~~~RI 77 (94)
T 2rnz_A 24 DDIIIKCQCWVQK----NDEERLAEILSINTRK-----APPKFYVHYVNYNKRLDEWITTDRI 77 (94)
T ss_dssp GGCCTTEEEEEEC----SSCEEEEEEEEEECSS-----SSCEEEEECTTSCSTTCEEEETTTB
T ss_pred ccccCCCEEEEEE----CCEEEEEEEEEEEEcC-----CCcEEEEEeCCcCcccccccCHHHc
Confidence 3578999999996 3378999999998642 234688999887752 33444444
No 174
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=67.59 E-value=6.5 Score=25.85 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 10 FTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
+|++++.+|..+|... ++.+++......+...++... +..+|+..|+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDV--------KKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCC--------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 5889999999999763 467888888888877777543 4456776665
No 175
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=65.80 E-value=5.7 Score=27.82 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
..++.+++.+|..+|... ++.+++..+...+...+++++ .+|+.+|+
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~----------~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRP----------ADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH----------HHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCH----------HHHHHHHH
Confidence 347889999999999864 567999988888888888655 77887776
No 176
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=65.47 E-value=7.7 Score=28.67 Aligned_cols=53 Identities=9% Similarity=0.160 Sum_probs=39.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 5 DSWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
.....||++|+.+|.++|... ++.+++......+-..++... +..++...|+.
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~~ 60 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP--------PDDELNAMLKE 60 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCC--------CHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCC--------CHHHHHHHHHH
Confidence 456789999999999999864 568999988888877776544 55667766653
No 177
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.31 E-value=5.8 Score=29.04 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=22.0
Q ss_pred eecccCCCceeeeeecceeeeeecCceeEEEEecCC
Q 026004 117 EARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGF 152 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF 152 (245)
.||-+ ||.||...+.- +. +.....|.|.+|
T Consensus 17 lA~ws-Dg~~Y~A~I~~---v~--~~~~~~V~f~Dy 46 (74)
T 2equ_A 17 LARWT-DCRYYPAKIEA---IN--KEGTFTVQFYDG 46 (74)
T ss_dssp EEECS-SSSEEEEEEEE---ES--TTSSEEEEETTS
T ss_pred EEECC-CCCEEEEEEEE---EC--CCCEEEEEEecC
Confidence 46777 99999998532 22 323699999998
No 178
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.17 E-value=17 Score=25.53 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcC-CCcccCCCCcCCcchhhhhhhcccccccccccCCc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFS-FSASRAARPAITWLQVQSWFRDKQKKSQAKSKSSS 78 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~-lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~~~p 78 (245)
..||++|-+.|++++...+........=..||+.|. -|. +||+.-+||-..+...+..+.|
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~----------~qcr~r~~~~l~~~~k~g~~~p 70 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTA----------KQVASQVQKYFIKLTKAGIPVS 70 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCH----------HHHHHHHHHHHGGGSTTCSCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCH----------HHHHHHHHHHHHHHHhcCCCCC
Confidence 479999999999999996422222467889999995 444 8999666665444333333333
No 179
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=64.26 E-value=3.9 Score=29.26 Aligned_cols=39 Identities=13% Similarity=0.394 Sum_probs=34.2
Q ss_pred CCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc
Q 026004 123 DDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN 161 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~ 161 (245)
+-.|+-|.-.|+||+-..|..+..|+..|+..++.-|=+
T Consensus 8 ~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~ 46 (64)
T 2ee1_A 8 KPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWES 46 (64)
T ss_dssp CCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEE
T ss_pred CCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccC
Confidence 346889999999998788999999999999999998854
No 180
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=63.68 E-value=10 Score=29.86 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=41.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 4 EDSWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 4 ~~~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
...+..||+.|+.+|..+|... ++.+++......+-..++... +..+|...|+
T Consensus 45 ~~~~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~--------~~~~~~~l~~ 100 (196)
T 3dtp_E 45 SNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLC--------TEQELDSMVA 100 (196)
T ss_dssp CCSSCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCC--------CHHHHHHHHT
T ss_pred hhhhhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 4567789999999999999874 568999988888888877654 5566665554
No 181
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=63.52 E-value=4.8 Score=30.29 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+.||++||++|..+|... ++.+++..+...+-..++..+
T Consensus 2 s~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~ 43 (148)
T 2lmt_A 2 SELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNP 43 (148)
T ss_dssp CSCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCc
Confidence 358999999999998763 678899888888888887765
No 182
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=63.26 E-value=12 Score=30.49 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=50.8
Q ss_pred eEEEEecCCCCCcccccc-ccccccccCCCccccccccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEE
Q 026004 144 EVRVRFSGFNNTEDEWVN-VKTAVRQRSIPLEQSECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFV 222 (245)
Q Consensus 144 el~Vrf~gF~~eeDEw~~-~~~~~R~rS~ple~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~ 222 (245)
.+.|+..+.+.+-++..+ +.+... ...|+.. -..+.+|+.+++.- . ++..||-|.|.+|.. -++.
T Consensus 17 ~f~vq~~~~~~~l~~l~~~l~~~~~-~~~~~~~--~~~~~~g~~c~a~~-~-~d~~wyRa~V~~v~~---------~~~~ 82 (218)
T 2wac_A 17 TFFAQSVESGSKLESLMSKLHADFQ-SNPPIAG--SYTPKRGDLVAAQF-T-LDNQWYRAKVERVQG---------SNAT 82 (218)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHH-HSCCCTT--SCCCCTTCEEEEEC-T-TTCCEEEEEEEEEET---------TEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh-hCCCCCC--CccCCcCCEEEEEE-C-CCCeEEEEEEEEecC---------CeEE
Confidence 488888875443222222 222111 1223332 23567999877533 2 234899999999963 3577
Q ss_pred EEEccCCccccccccceeecc
Q 026004 223 VRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 223 Vr~~h~~~ee~v~~~~ic~rp 243 (245)
|.|.+.++.+.|++.+|..-|
T Consensus 83 V~~vDyG~~~~v~~~~l~~l~ 103 (218)
T 2wac_A 83 VLYIDYGNKETLPTNRLAALP 103 (218)
T ss_dssp EEETTTCCEEEEEGGGEEECC
T ss_pred EEEEecCCeEEEchHHcccCC
Confidence 888776666677777765443
No 183
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=62.23 E-value=7.3 Score=27.71 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 9 DFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
.+|++|++++.++|... ++.+++..+...+-.+++++.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 46899999999999863 567899988888888888765
No 184
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=62.18 E-value=16 Score=26.43 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
..+|.+|...||+++.......+ ..=+.||+.+|-|. +||+.=|+
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~--~RW~~IA~~lgRt~----------~eV~~~y~ 53 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTP--GRWEKIAHELGRSV----------TDVTTKAK 53 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCT--THHHHHHHHHTSCH----------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCC--cHHHHHHHHhCCCH----------HHHHHHHH
Confidence 46999999999999998543334 45789999998877 99986554
No 185
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=61.29 E-value=6.7 Score=29.21 Aligned_cols=39 Identities=13% Similarity=0.276 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI-----GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-----~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+.||++|+++|.++|... ++.+++..+...+-..++..+
T Consensus 1 s~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~ 44 (159)
T 2ovk_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 368999999999998753 567888887777777777654
No 186
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=60.03 E-value=13 Score=35.59 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 4 EDSWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 4 ~~~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
++....||++||++|.++|... ++.+++..+...+-.++++.. +..+|+.-|+
T Consensus 290 ePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~--------TeeEI~~Lf~ 345 (440)
T 3u0k_A 290 EPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP--------TEAELQDMIN 345 (440)
T ss_dssp CCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred HhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC--------CHHHHHHHHH
Confidence 4556689999999999999864 678999988888888888754 5577776665
No 187
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=59.38 E-value=16 Score=30.83 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=44.4
Q ss_pred CCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc-ccccccccCCCccccccccccCCceEEEeeecCCceeEE
Q 026004 122 KDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN-VKTAVRQRSIPLEQSECVKVNVGDLVLCYQEREDQAVYC 200 (245)
Q Consensus 122 ~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~-~~~~~R~rS~ple~~eC~~v~~G~~v~cf~~~~~~~~yy 200 (245)
+-|.+.+|-++- +...| .+.|+..+.+..-.+..+ +...... +-+++. =..+.+|+.+++... +..||
T Consensus 14 ~~~~~~~V~Vt~---v~~p~--~f~vq~~~~~~~l~~l~~~l~~~~~~-~~~~~~--~~~~~~G~~c~a~~~---d~~wy 82 (246)
T 2hqx_A 14 RSASYKPVFVTE---ITDDL--HFYVQDVETGTQFQKLMENMRNDIAS-HPPVEG--SYAPRRGEFCIAKFV---DGEWY 82 (246)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHH-SCCCTT--TCCCCTTCEEEEECT---TSCEE
T ss_pred CCCCEEEEEEEE---ECCCC--EEEEEECCcHHHHHHHHHHHHHHHhh-CCCCCC--CCCCCCCCEEEEEcC---CCCEE
Confidence 445666666442 34455 488888875433233222 2211111 112221 135678997775332 34899
Q ss_pred eeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 201 DAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 201 DA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
-|.|..|... -++.|.|.+-++.+.|++.+|+.-|
T Consensus 83 Ra~V~~~~~~--------~~~~V~~vDyGn~~~v~~~~lr~l~ 117 (246)
T 2hqx_A 83 RARVEKVESP--------AKIHVFYIDYGNREVLPSTRLGTLS 117 (246)
T ss_dssp EEEEEEEEET--------TEEEEEETTTCCEEEECGGGEECCC
T ss_pred EEEEEEEcCC--------CeEEEEEEeCCCeEEEeHHHhhcCC
Confidence 9999999642 2678998887777788888876544
No 188
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=58.19 E-value=22 Score=26.18 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=38.4
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccce
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERL 239 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~i 239 (245)
+...||.|++==- .+.+||-|+|.+|.-..+ .++|.|.. .+++.++..+|
T Consensus 12 ~f~vgd~VmaRW~--Gd~~yYparItSits~~~-------~Y~VkfKd-gT~e~L~~kDI 61 (68)
T 2dig_A 12 KFADGEVVRGRWP--GSSLYYEVEILSHDSTSQ-------LYTVKYKD-GTELELKENDI 61 (68)
T ss_dssp SSCSSCEEEEECT--TTCCEEEEEEEEEETTTT-------EEEEECTT-SCEEEEETTTE
T ss_pred EeecCCEEEEEcc--CCccceEEEEEEeccCCc-------eEEEEecC-CCEEEechhcc
Confidence 4568999997444 357999999999994333 68999999 77777777766
No 189
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=58.11 E-value=12 Score=25.27 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
..+|++++.+|..+|.. .++.+++......+-..++ . ++..+|...|+
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~--------~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-S--------VTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-T--------CCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-C--------CCHHHHHHHHH
Confidence 46899999999999986 3567888887777777665 2 24466776665
No 190
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=57.54 E-value=3.1 Score=30.61 Aligned_cols=49 Identities=12% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
+.||++|+++|.++|... ++.+++......+-..++..+ +..+++..|+
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~l~~ 53 (151)
T 1w7j_B 2 IEFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNP--------TNAEVLKVLG 53 (151)
T ss_dssp ---------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCC--------CHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC--------CHHHHHHHHH
Confidence 358999999999999863 556788777777767777654 4456666664
No 191
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=57.33 E-value=13 Score=24.74 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
..||++.-.++...+.. +... ..-..++|.+||+++ .+|..|...
T Consensus 4 ~~ys~efK~~~~~~~~~--g~s~-~~~~~~vA~~~gIs~----------~tl~~W~~~ 48 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRN--DNDC-KGNQRATARKYNIHR----------RQIQKWLQC 48 (59)
T ss_dssp CCCCHHHHHHHHHHHHH--CTTT-TTCHHHHHHHTTSCH----------HHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHc--CCCc-chHHHHHHHHHCcCH----------HHHHHHHHH
Confidence 46888888777444443 2211 112569999999988 999999753
No 192
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.04 E-value=23 Score=21.01 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 9 DFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
.+++++..++-.++.+ + + ...+||+.|++|. .-|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~--g-~----s~~~IA~~lgis~----------~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL--N-V----SLHEMSRKISRSR----------HCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT--T-C----CHHHHHHHHTCCH----------HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc--C-C----CHHHHHHHHCcCH----------HHHHHHHhh
Confidence 4678877777666644 2 2 2678999999998 889999864
No 193
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=56.47 E-value=9.6 Score=28.14 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHH-----hCCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKE-----IGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~-----~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+.||++|+++|.++|.. +++.+++......+-..++..+
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~ 44 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINP 44 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 46899999999999975 5677888877777777777544
No 194
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=56.34 E-value=18 Score=25.95 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
..+|+.|+.++.++|... ++.+++......+...++...
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 44 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSP 44 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 568999999999999864 567889888888888877644
No 195
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=53.66 E-value=21 Score=26.39 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCC
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFS 45 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS 45 (245)
..|+++++.+|.++|... ++.+++..+...+...++..
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 59 (166)
T 2aao_A 19 ESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGAN 59 (166)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCC
T ss_pred HhCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCC
Confidence 358899999999999863 56788888777777666654
No 196
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=53.36 E-value=16 Score=27.61 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
..||++|+.+|.++|... ++.+++..+...+...++...
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~ 44 (179)
T 2f2o_A 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP 44 (179)
T ss_dssp ---CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCC
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 468899999999999874 567899888888877777643
No 197
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=52.82 E-value=27 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=32.5
Q ss_pred CcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 6 SWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
....+|+.|+.+|+++|... ++.+++..+...+-..++...
T Consensus 18 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 61 (169)
T 3qrx_A 18 GRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEP 61 (169)
T ss_dssp --CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 34679999999999999874 567899988888888887644
No 198
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=52.60 E-value=12 Score=32.86 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=63.8
Q ss_pred eeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc--------------------ccc-------
Q 026004 114 LAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK--------------------TAV------- 166 (245)
Q Consensus 114 ~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~--------------------~~~------- 166 (245)
|-+||.-..+-.-|=|++-+. + .|. .|+|||.|+.+.+|.|+++- +.+
T Consensus 67 mKLEa~D~~~~~~~~vATV~~---v-~g~-~l~l~~dG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~W 141 (243)
T 2biv_A 67 MKLEARDPRNATSVCIATVIG---I-TGA-RLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSW 141 (243)
T ss_dssp CEEEEEETTEEEEEEEEEEEE---E-ETT-EEEEEETTSCSSSCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGGH
T ss_pred CEEEEecCCCCCcEEEEEEEE---E-eCC-EEEEEECCCCCCCCEeecCCCCccccChhHHhcCCccCCCcccccccchH
Confidence 778888888765555665443 2 343 69999999999999998731 011
Q ss_pred ---------cccCCCccccc-------cccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEcc
Q 026004 167 ---------RQRSIPLEQSE-------CVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDH 227 (245)
Q Consensus 167 ---------R~rS~ple~~e-------C~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h 227 (245)
....+|.+-.. =...++|-.|-+....+ ..+++=|.|.+|.-. ++.|.||.
T Consensus 142 ~~yL~~tl~ga~~aP~~lF~~~~~~~~~~~F~~GmKLEavD~~~-p~~icvATV~~v~g~---------rl~v~fDg 208 (243)
T 2biv_A 142 PMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKN-PYLICPATIGDVKGD---------EVHITFDG 208 (243)
T ss_dssp HHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEETT---------EEEEEETT
T ss_pred HHHHHHhccCCccCCHHHhccCCCCCccccccCCCEEEEEccCC-CCeEEEEEEEEecCC---------EEEEEECC
Confidence 12233332211 14677888888766655 447889999999732 35677654
No 199
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=52.43 E-value=6.3 Score=24.22 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcc
Q 026004 9 DFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDK 66 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNR 66 (245)
.++++++..+-.++.+ + . ...+||+.||+|. .-|..|++.-
T Consensus 5 ~~~~~~~~~i~~l~~~--g--~---s~~~ia~~lgvs~----------~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK--G--H---PRQQLAIIFGIGV----------STLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT--T--C---CHHHHHHTTSCCH----------HHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc--C--C---CHHHHHHHHCCCH----------HHHHHHHHHc
Confidence 4677777777666654 2 2 3578999999988 8899998754
No 200
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=51.71 E-value=25 Score=27.01 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=36.1
Q ss_pred cCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCcc--ccccccce
Q 026004 182 NVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSE--EQVKVERL 239 (245)
Q Consensus 182 ~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~e--e~v~~~~i 239 (245)
.+|..|+|++. +-.+|.|.|+++..... ....-.|.|-|..-+.. |=|+..+|
T Consensus 16 ~~~e~vlc~~~---dg~~yeAeIl~ir~~~~--~~~~~~YYVHY~g~NkRlDEWV~~~RL 70 (92)
T 2bud_A 16 NPDKIYFIRRE---DGTVHRGQVLQSRTTEN--AAAPDEYYVHYVGLNRRLDGWVGRHRI 70 (92)
T ss_dssp CTTSCEEEECT---TSCEEEEEEEEEECTTT--CSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred CCCCEEEEEeC---CCCEEEEEEEEEeeccC--CCCCcEEEEEeCCcccccccccCHHHh
Confidence 46889999994 23789999999885432 23455799999877652 44544443
No 201
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=51.48 E-value=15 Score=26.52 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 11 TLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 11 T~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
|++|+.+|.++|... ++.+++......+...++...
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 39 (142)
T 2bl0_C 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRV 39 (142)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 567888888888764 567788877777777776543
No 202
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=51.40 E-value=13 Score=33.12 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=35.9
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
.|-+||-..++-..+=|++-.. + .|. .|+|+|.|..+++|.|++.
T Consensus 147 GMKLEavD~~np~~icvATV~~--v--~g~-rl~v~fDGw~~~~D~W~~~ 191 (265)
T 2r58_A 147 GQKLEAVDKKNPQLICCATVDA--I--KDD-QIHVTFDGWRGAFDYWCNY 191 (265)
T ss_dssp TCEEEEECTTSTTCEEEEEEEE--E--ETT-EEEEEETTSCGGGCEEEET
T ss_pred CcEEEeccCCCCCCEEEEEEEE--e--cCC-EEEEEeCCCCCcCCEEEEC
Confidence 4788999999988777776443 2 243 6999999999999999983
No 203
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=51.23 E-value=34 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=27.4
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccC
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHD 228 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~ 228 (245)
.++.+|+-||+--. +-+||-+.|..|...++ .| +|++.++
T Consensus 2 ~~f~~GedVLarws---DG~fYlGtI~~V~~~~~---~c----lV~F~D~ 41 (58)
T 4hcz_A 2 PRLWEGQDVLARWT---DGLLYLGTIKKVDSARE---VC----LVQFEDD 41 (58)
T ss_dssp CSCCTTCEEEEECT---TSCEEEEEEEEEETTTT---EE----EEEETTS
T ss_pred CccccCCEEEEEec---CCCEEeEEEEEEecCCC---EE----EEEEcCC
Confidence 36789999996432 35899999999975433 34 5665543
No 204
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=51.07 E-value=34 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=37.6
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
.+.+|+.+++. ... +..||=|.|.++.... .+.|.|-+=++.+.|++.+|..-|
T Consensus 65 ~~~~G~~c~a~-~~~-d~~wyRa~V~~~~~~~--------~~~V~~vDyG~~~~v~~~~l~~l~ 118 (201)
T 4b9w_A 65 KAEIGRPCCAF-FSG-DGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQAIL 118 (201)
T ss_dssp CCCTTCEEEEE-ETT-TTEEEEEEEEEECTTS--------CEEEEETTTCCEEEECGGGEEECC
T ss_pred CCCCCCEEEEE-ECC-CCeEEEEEEEEECCCC--------eEEEEEEccCCEEEEEHHHhccCh
Confidence 56789876653 333 3489999999986321 267888777777788888886544
No 205
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=50.62 E-value=25 Score=26.60 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHcCC
Q 026004 8 PDFTLAEIKEMESMYKE-IGEASLTQEYCKALATSFSF 44 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~-~~~~y~~~~~rq~LA~~f~l 44 (245)
+.||..||.+|-+.|.. .++.+++..+...+-..++.
T Consensus 13 ~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~ 50 (183)
T 1s6c_A 13 TNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFP 50 (183)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcC
Confidence 57899999999999998 57789999888777777653
No 206
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=50.41 E-value=14 Score=32.38 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=36.8
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.|-+||.-.++-..+-|++-.. + .|. .|+|+|.|..+..|.|++..
T Consensus 175 GmKLEavD~~~p~~icvATV~~--v--~g~-rl~v~fDgw~~~~D~W~~~d 220 (243)
T 2biv_A 175 GMKLEAIDKKNPYLICPATIGD--V--KGD-EVHITFDGWSGAFDYWCKYD 220 (243)
T ss_dssp TCEEEEECTTSTTCEEEEEEEE--E--ETT-EEEEEETTSCGGGCEEEETT
T ss_pred CCEEEEEccCCCCeEEEEEEEE--e--cCC-EEEEEECCCCCcCCEEEeCC
Confidence 4888999999988888876443 2 243 69999999999999999854
No 207
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=49.99 E-value=7.4 Score=30.86 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=18.3
Q ss_pred eeEEEEecCCCCCccccccc
Q 026004 143 LEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 143 ~el~Vrf~gF~~eeDEw~~~ 162 (245)
++..|+|.|+..--||||..
T Consensus 59 ~~Y~VHY~GWn~~WDEWV~~ 78 (110)
T 3oa6_A 59 PEYLIHFNGWNRSWDRWAAE 78 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEG
T ss_pred cEEEEEECCcCcchhhccCh
Confidence 57999999999999999973
No 208
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=48.29 E-value=14 Score=27.18 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCC
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFS 45 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS 45 (245)
..||++|+.+|+++|... ++.+++......+...++..
T Consensus 12 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 52 (162)
T 1top_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN 52 (162)
T ss_dssp HHSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC
Confidence 358999999999999864 45677777777776666654
No 209
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=53.84 E-value=3.8 Score=30.86 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=22.7
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTED 157 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeD 157 (245)
||-+ ||.||...+.- +. +..++.|.|.. |+.|.
T Consensus 15 Akws-Dg~wY~A~I~~---v~--~~~~y~V~F~D-Gn~E~ 47 (81)
T 2ldm_A 15 ASWS-DSRFYPAKVTA---VN--KDGTYTVKFYD-GVVQT 47 (81)
Confidence 5656 99999998642 22 32369999998 75543
No 210
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.88 E-value=21 Score=27.07 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=28.9
Q ss_pred ecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 118 ARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 118 Ars~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
|+.+.|++||-..+- |+...+. +.|.|-.||.++ -|++.
T Consensus 30 ak~~d~n~WyRakV~---~v~~~~~--veVl~~DyGn~~--~V~~~ 68 (85)
T 2eqk_A 30 VKIQDKNQWRRGQII---RMVTDTL--VEVLLYDVGVEL--VVNVD 68 (85)
T ss_dssp EECSSSCCEEEEEEE---EECSSSE--EEEECTTTCCEE--EEETT
T ss_pred EEeCCCCeEEEEEEE---EecCCCe--EEEEEEccCCEE--EEEcc
Confidence 578888999998863 3444554 999999999875 35544
No 211
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=46.52 E-value=8.3 Score=31.56 Aligned_cols=19 Identities=26% Similarity=0.709 Sum_probs=17.9
Q ss_pred eEEEEecCCCCCccccccc
Q 026004 144 EVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 144 el~Vrf~gF~~eeDEw~~~ 162 (245)
+..|||.||..--||||..
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~ 96 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGY 96 (136)
T ss_dssp EEEECCTTSCGGGCEEEET
T ss_pred eEEEEeCCcCCcceeeecH
Confidence 8999999999999999984
No 212
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=46.50 E-value=46 Score=24.05 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=34.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
.-..||++|-+.|-+++...++. =..||..||-|+ .||++-|.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~k------W~~IA~~lgRt~----------~q~knRw~ 64 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGND------WATIGAALGRSA----------SSVKDRCR 64 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSC------HHHHHHHHTSCH----------HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC------HHHHHHHhCCCH----------HHHHHHHH
Confidence 34579999999999999998643 578899998877 99995443
No 213
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=51.76 E-value=4.3 Score=30.47 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=29.0
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCC
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDF 229 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~ 229 (245)
.+..|+.|+|+..+ .+|+|.|++|.... ..-.|.|-|..=+
T Consensus 12 ~~~~Gekv~~~~~~----~~y~AkIl~i~~~~-----~~~~YyVHY~GwN 52 (85)
T 2lrq_A 12 LFVDGERVLCFHGP----LIYEAKVLKTKPDA-----TPVEYYIHYAGWS 52 (85)
Confidence 47799999999833 56999999998522 1234677766443
No 214
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=44.80 E-value=12 Score=31.31 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHcCCCc
Q 026004 28 ASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 28 ~y~~~~~rq~LA~~f~lS~ 46 (245)
.|++.+..+.+|+.|++++
T Consensus 39 G~l~~~~~~~iA~~l~l~~ 57 (181)
T 3i9v_2 39 GWIRPERIEEIARLVGTTP 57 (181)
T ss_dssp SSCCHHHHHHHHHHHTSCH
T ss_pred CCCCHHHHHHHHHHhCcCH
Confidence 6999999999999999998
No 215
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.13 E-value=28 Score=25.58 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=29.6
Q ss_pred cccccccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeE
Q 026004 174 EQSECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCI 220 (245)
Q Consensus 174 e~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~ 220 (245)
-.+-|.++.+|+-|||-.. +-+||-+.|..|... .+.|.=.
T Consensus 3 ~g~~~~~f~eGqdVLarWs---DGlfYlGtV~kV~~~---~~~ClV~ 43 (68)
T 2e5p_A 3 SGSSGPRLWEGQDVLARWT---DGLLYLGTIKKVDSA---REVCLVQ 43 (68)
T ss_dssp CCCCCCCCCTTCEEEEECT---TSSEEEEEEEEEETT---TTEEEEE
T ss_pred CCCCCcccccCCEEEEEec---CCcEEEeEEEEEecC---CcEEEEE
Confidence 3567899999999996432 358999999998743 3445433
No 216
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=43.84 E-value=9.5 Score=24.33 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHcC
Q 026004 14 EIKEMESMYKEIGEASLTQEYCKALATSFS 43 (245)
Q Consensus 14 Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~ 43 (245)
|+++||+.|++. =+-|-+-+.++|-.+|.
T Consensus 2 eveelekkfkel-wkgprrgeieelhkkfh 30 (35)
T 1qp6_A 2 EVEELEKKFKEL-WKGPRRGEIEELHKKFH 30 (35)
T ss_dssp CSHHHHHHHHHH-HSSSCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hcCCccchHHHHHHHHH
Confidence 578999999998 46788888999988874
No 217
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=43.46 E-value=53 Score=22.28 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 10 FTLAEIKEMESMYKEIG----EASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~~----~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
+|++|+..++++-...+ ..-++ ..+||+.+|.|. ..|..|-.+++
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~~glt---q~~lA~~~gvs~----------~~is~~e~g~~ 50 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELGLS---YESVADKMGMGQ----------SAVAALFNGIN 50 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCC---HHHHHHHTTSCH----------HHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHhCcCH----------HHHHHHHcCCC
Confidence 57777776655433321 01122 468999999988 88999998774
No 218
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.83 E-value=21 Score=25.34 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.6
Q ss_pred CCceeeeeecceeeeee---cC--ceeEEEEecCCCCCccccccc
Q 026004 123 DDAWYDVASFLTYRVTC---AG--ELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 123 D~AWYdV~~fl~~R~~~---~g--~~el~Vrf~gF~~eeDEw~~~ 162 (245)
+-.||.|.--|++|... .| ..+..|+..|++.++.-|=+.
T Consensus 8 ~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~ 52 (68)
T 2epb_A 8 NPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELE 52 (68)
T ss_dssp CSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEET
T ss_pred CCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccc
Confidence 44689999999988753 36 678999999999999999653
No 219
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=42.67 E-value=47 Score=27.86 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=38.0
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
..+.+|+.+++. ... +..||=|.|.++.... .+.|.|-+=++.+.|++.+|..-|
T Consensus 64 ~~~~~G~~c~a~-~~~-d~~WyRa~V~~~~~~~--------~~~V~~vDyGn~~~v~~~~l~~l~ 118 (226)
T 4b9x_A 64 FKAEIGRPCCAF-FSG-DGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQAIL 118 (226)
T ss_dssp CCCCTTCEEEEE-ETT-TTEEEEEEEEEECSSS--------EEEEECTTTCCEEEEEGGGEECCC
T ss_pred CCCCCCCEEEEE-ECC-CCeEEEEEEEEECCCC--------eEEEEEEecCCEEEEEHHHhccCh
Confidence 356789976653 233 3489999999986321 367888777777788888876544
No 220
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=42.36 E-value=20 Score=32.01 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=64.9
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccccc-------------------------cc-
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKT-------------------------AV- 166 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~-------------------------~~- 166 (245)
-|-+||-...+-.-+=|++-.. ..|. .|+|||.|+.+.+|-|+++.. .|
T Consensus 38 GMKLEavDp~~~~~icvATV~~----v~g~-~l~l~~DG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~ 112 (265)
T 2r58_A 38 GMKLEALDPRNVTSTCIATVVG----VLGS-RLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFCMNASS 112 (265)
T ss_dssp TCEEEEEETTEEEEEEEEEEEE----EETT-EEEEEETTSCSSCCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGG
T ss_pred CCEeEEecCCCCCCEEEEEEEE----EeCC-EEEEEeCCCCCcCCEeEeCCCCCeeccccHHhcCCcccCccccccCcCC
Confidence 3788889888876565665433 2354 799999999999999987210 00
Q ss_pred ----------cccCCCccc-------cccccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEcc
Q 026004 167 ----------RQRSIPLEQ-------SECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDH 227 (245)
Q Consensus 167 ----------R~rS~ple~-------~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h 227 (245)
.....|..- ..-...++|-.+-+....+ ..+.+=|.|.+|.-+ ++.|.||.
T Consensus 113 W~~yL~ktl~ga~~aP~~lF~~~~~~~~~~~F~vGMKLEavD~~n-p~~icvATV~~v~g~---------rl~v~fDG 180 (265)
T 2r58_A 113 WPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKN-PQLICCATVDAIKDD---------QIHVTFDG 180 (265)
T ss_dssp HHHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEETT---------EEEEEETT
T ss_pred HHHHHHHhhcCCccCCHHHhcccCCCCcccccccCcEEEeccCCC-CCCEEEEEEEEecCC---------EEEEEeCC
Confidence 112222221 1234688888888766655 447799999999622 46777753
No 221
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=42.29 E-value=29 Score=25.11 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=24.4
Q ss_pred eecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCc
Q 026004 117 EARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTE 156 (245)
Q Consensus 117 EArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~ee 156 (245)
-||- .|+.||...... ..|+....|.|-+ |..+
T Consensus 14 mArW-~D~~yYpA~I~s-----i~~~~~Y~V~F~d-G~~e 46 (67)
T 3p8d_A 14 LACW-SDCRFYPAKVTA-----VNKDGTYTVKFYD-GVVQ 46 (67)
T ss_dssp EEEC-TTSCEEEEEEEE-----ECTTSEEEEEETT-SCEE
T ss_pred EEEc-CCCCEeeEEEEE-----ECCCCeEEEEEeC-CceE
Confidence 4786 999999999642 3454579999987 6544
No 222
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=41.60 E-value=53 Score=24.95 Aligned_cols=36 Identities=0% Similarity=0.018 Sum_probs=29.8
Q ss_pred cCCCCHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHc
Q 026004 7 WPDFTLAEIKEMESMYKEI----GEASLTQEYCKALATSF 42 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~----~~~y~~~~~rq~LA~~f 42 (245)
...+|+.++.+|+++|... ++.+++..+...+..++
T Consensus 3 ~~~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~ 42 (191)
T 2ccm_A 3 AHQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKI 42 (191)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHH
Confidence 3468899999999999775 67889998888887777
No 223
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=41.16 E-value=42 Score=22.68 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 10 FTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
.+++++.+|..+|.. .++.+++......+...++... +..+|...|+
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~l~~ 52 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKL--------TDEEVEQMIK 52 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 456777888888875 4567888888888888877432 4456666554
No 224
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=40.93 E-value=47 Score=29.11 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=40.7
Q ss_pred cCCceEEEeeecCCceeEEeeEEeeeeecc--cC--CCCceeEEEEEEccCCccccccccceeecc
Q 026004 182 NVGDLVLCYQEREDQAVYCDAHVLDIQRRV--HD--TEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 182 ~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~--Hd--~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
+.|++|-|-..+ .-.||-|+|+.|.++. ++ ... ..|-|.|+..+..+.+.+.-.-.||
T Consensus 4 ki~~~vd~~d~~--~Gawfea~i~~v~~~~~~~~~~~d~--~~y~v~y~~~~~~~~~~~~~~~irp 65 (226)
T 3ask_A 4 KVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRPALEED--VIYHVKYDDYPENGVVQMNSRDVRA 65 (226)
T ss_dssp CTTCEEEEECTT--TCCEEEEEEEEEEECC------CCC--EEEEEEETTCGGGCEEEEEGGGEEE
T ss_pred ccCceEEeeecC--CCceeEEEEEEEeccccccCCCCCc--eEEEeecccCcccCceecccccccc
Confidence 579999886543 3479999999999854 12 133 8999999999876655554444444
No 225
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=40.44 E-value=44 Score=26.29 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHcCCCc
Q 026004 9 DFTLAEIKEMESMYKEI--GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~--~~~y~~~~~rq~LA~~f~lS~ 46 (245)
..|++|.++++++|... ++.+++.++...+=.+.+|+.
T Consensus 26 ~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~ 65 (121)
T 3fia_A 26 AITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQ 65 (121)
T ss_dssp CCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCH
Confidence 47999999999999876 467888887777777778866
No 226
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=40.43 E-value=22 Score=33.87 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=37.7
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.|-+||-..++-...=|++-.. ..| ..|+|+|.|..+..|+|+++.
T Consensus 380 gmkLEAvD~~np~~icvATV~~----v~~-~~~~i~fDgw~~~~d~w~~~~ 425 (447)
T 3h6z_A 380 GMSLECADLMDPRLVCVATVAR----VVG-RLLKVHFDGWTDEYDQWLDCE 425 (447)
T ss_dssp TCEEEEECTTSTTCEEEEEEEE----EET-TEEEEECTTSCGGGCEEEETT
T ss_pred CCEEEeecCCCCCcEEEEEEeE----ecC-CEEEEEeCCCCCcCCEEEecC
Confidence 4889999999999988886543 224 489999999999999999754
No 227
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=39.81 E-value=40 Score=25.53 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHc
Q 026004 8 PDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSF 42 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f 42 (245)
+.|+..||.++=+.|... ++.+++..+...+-..+
T Consensus 20 ~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 1g8i_A 20 TYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQF 55 (190)
T ss_dssp SSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHh
Confidence 568888888888888877 67889987777777666
No 228
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=39.79 E-value=37 Score=25.07 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=29.9
Q ss_pred CcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 6 SWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
.-..+|.+|++++.++|... ++.+++..+...+-...+++.
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~ 47 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQ 47 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCH
Confidence 33458999999999999863 567888877776666555544
No 229
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=39.49 E-value=33 Score=24.89 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQ-EYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~-~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
..||+++..++=+++.+.+..+.+. .-..++|..||+|+ .+|..|-+.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~----------~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP----------ETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCH----------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCH----------HHHHHHHHH
Confidence 4688888876666554431123332 46789999999998 899999764
No 230
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=38.88 E-value=41 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHH-HHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKA-LATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~-LA~~f~lS~ 46 (245)
..+|++|+.+|.++|... ++.+++..+... |...++..+
T Consensus 43 ~~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~ 85 (226)
T 2lvv_A 43 RDKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDE 85 (226)
T ss_dssp SSCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTT
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCC
Confidence 468999999999998764 567888877776 767667654
No 231
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=38.45 E-value=44 Score=24.79 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQK 68 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~ 68 (245)
..||.++-.++=..+.++ ..+. ..+||+.||+|. ..|..|..++..
T Consensus 6 ~~~t~e~K~~iv~~~~~~--g~~~---~~~~A~~~gvs~----------stl~~~~~~~~~ 51 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEEN--PDLR---KGEIARRFNIPP----------STLSTILKNKRA 51 (131)
T ss_dssp CCCCHHHHHHHHHHHHHC--TTSC---HHHHHHHHTCCH----------HHHHHHHHTHHH
T ss_pred eeCCHHHHHHHHHHHHHC--CCCc---HHHHHHHhCCCH----------HHHHHHHhchhh
Confidence 569999988887777553 2333 347999999988 899999988754
No 232
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=38.22 E-value=31 Score=25.69 Aligned_cols=51 Identities=10% Similarity=-0.028 Sum_probs=38.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 4 EDSWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 4 ~~~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
+.+...+|+.|.+.|.-+++. + ..++||+.+++|+ .-|+++.++=+.|...
T Consensus 29 ~~~~~~Lt~re~~Vl~l~~~G----~----s~~EIA~~L~iS~----------~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 29 GYGDKRLSPKESEVLRLFAEG----F----LVTEIAKKLNRSI----------KTISSQKKSAMMKLGV 79 (99)
T ss_dssp CCSSSSCCHHHHHHHHHHHHT----C----CHHHHHHHHTSCH----------HHHHHHHHHHHHHHTC
T ss_pred CcccCCCCHHHHHHHHHHHcC----C----CHHHHHHHHCcCH----------HHHHHHHHHHHHHHCC
Confidence 345678999999999775532 1 2389999999998 8899988866666543
No 233
>3pvi_A Protein (pvuii endonuclease); complex (restriction endonuclease/DNA), mutant, protein/DNA, hydrolase/DNA complex; HET: DNA; 1.59A {Proteus vulgaris} SCOP: c.52.1.6 PDB: 1eyu_A* 1f0o_A 1pvi_A* 1ni0_A 1k0z_A 1h56_A 1pvu_A 2pvi_A*
Probab=36.97 E-value=34 Score=28.49 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccccCCcccchhhhcccCC
Q 026004 11 TLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKSKSSSKDLKLFIDLCGE 90 (245)
Q Consensus 11 T~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~~~~p~~~~~~~d~~~~ 90 (245)
+..+++.||.+|-.. .+.|.||.+-+.+. =||..=.|.= .-+ +...
T Consensus 2 sh~d~~~l~~L~p~i-------~eyq~lA~k~gInD---------------IFQdNGgKlL-------QvL-l~~g---- 47 (157)
T 3pvi_A 2 SHPDLNKLLELWPHI-------QEYQDLALKHGIND---------------IFQGNGGKLL-------QVL-LITG---- 47 (157)
T ss_dssp CCTTHHHHHHHHHHH-------HHHHHHHHHTTCSC---------------TTSTTHHHHH-------HHH-HHHT----
T ss_pred CchHHHHHHHHHHHH-------HHHHHHHHHcChhH---------------HHhcccHhHH-------HHH-HHhC----
Confidence 345788999999885 78999999999977 5997633320 000 0111
Q ss_pred CCCCCCCCCCCCCcCCccCcccceeEeeccc
Q 026004 91 SISSNEPEMSDKPIGSRISELKELAFEARSS 121 (245)
Q Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~~~efEArs~ 121 (245)
....+..+|+.+.|....|||-||-
T Consensus 48 ------l~ilpgREGNDavd~~G~E~ElKSv 72 (157)
T 3pvi_A 48 ------LTVLPGREGNDAVDNAGQEYELKSI 72 (157)
T ss_dssp ------CBCCTTCSSSCEECTTCCEEEEEEE
T ss_pred ------CeecCCCcCccccccCCCEEEeeee
Confidence 1122335899999999999999984
No 234
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=36.73 E-value=26 Score=25.81 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCc
Q 026004 11 TLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 11 T~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
|++|+.+|.++|.. .++.+++..+...+-..++..+
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~ 39 (143)
T 2obh_A 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEP 39 (143)
T ss_dssp CHHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 56788888888875 3456777766666666666543
No 235
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=36.44 E-value=12 Score=28.03 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 8 PDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
..+|++|++++.++|... ++.+++.++...+-.+++++.
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~ 55 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSI 55 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSS
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCH
Confidence 368999999999999874 467888888777766666654
No 236
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=36.08 E-value=44 Score=24.90 Aligned_cols=38 Identities=5% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHcCCCc
Q 026004 9 DFTLAEIKEMESMYKEI--GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~--~~~y~~~~~rq~LA~~f~lS~ 46 (245)
.+|++|++++.++|... ++.+++..+...+-.+++++.
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~ 47 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPV 47 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCH
Confidence 37999999999999763 568899888887777777765
No 237
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=35.99 E-value=50 Score=24.38 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHh---CCCCCCHHHHHH----HHHHcCCCc
Q 026004 10 FTLAEIKEMESMYKEI---GEASLTQEYCKA----LATSFSFSA 46 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~----LA~~f~lS~ 46 (245)
.|+.|+++|+++|... ++.+++..+... +...++..+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~ 44 (176)
T 1nya_A 1 TTAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDA 44 (176)
T ss_dssp CCSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCS
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCC
Confidence 3678999999999864 567888877777 566677654
No 238
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=35.62 E-value=61 Score=24.46 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcC
Q 026004 8 PDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFS 43 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~ 43 (245)
+.||.+||.+|=+.|... ++.+++..+...+-..++
T Consensus 20 ~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~ 56 (190)
T 1fpw_A 20 TYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFF 56 (190)
T ss_dssp CCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHc
Confidence 579999999999999877 688999988888777774
No 239
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.07 E-value=64 Score=24.40 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=34.5
Q ss_pred ccccCCceEEE-eeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 179 VKVNVGDLVLC-YQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 179 ~~v~~G~~v~c-f~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
...+.|+.|.+ |.+++ .||=|.|..+.+-. .+.|.+.+=.+++.|++.+ .||
T Consensus 20 ~~~k~g~~vaak~~d~n---~WyRakV~~v~~~~--------~veVl~~DyGn~~~V~~~~--LR~ 72 (85)
T 2eqk_A 20 VKWENDMHCAVKIQDKN---QWRRGQIIRMVTDT--------LVEVLLYDVGVELVVNVDC--LRK 72 (85)
T ss_dssp CCCCSSCEEEEECSSSC---CEEEEEEEEECSSS--------EEEEECTTTCCEEEEETTT--EEE
T ss_pred cCccCCCEEEEEeCCCC---eEEEEEEEEecCCC--------eEEEEEEccCCEEEEEccc--ccc
Confidence 35678988774 55443 89999999998432 2556655555666777664 454
No 240
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=35.00 E-value=54 Score=25.78 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 9 DFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
.+|.+|+.+|.++|... ++.+++..+...+-..++... +..+|+.-|+
T Consensus 50 ~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~--------~~~~~~~l~~ 100 (197)
T 3pm8_A 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQK--------IPPDIHQVLR 100 (197)
T ss_dssp HCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC------------CHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 47889999999999874 567888877777777776532 4455665554
No 241
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=34.12 E-value=34 Score=32.73 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=36.7
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
.|-+||....+-...=|++-.. +. |. .|+|+|.|...+.|+|++.
T Consensus 370 GMKLEAvD~~np~~icvATV~~--v~--~~-~l~i~fDgw~~~~d~w~~~ 414 (456)
T 3f70_A 370 GMKLEAVDLMEPRLICVATVKR--VV--HR-LLSIHFDGWDSEYDQWVDC 414 (456)
T ss_dssp TCEEEEECTTSTTCEEEEEEEE--EE--TT-EEEEEETTSCGGGCEEEET
T ss_pred CCEEEeecCCCCCcEEEEEEEE--ec--CC-EEEEEeCCCCCCCCeEeec
Confidence 4789999999999888886432 22 43 7999999999999999874
No 242
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=34.10 E-value=52 Score=24.91 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHH---hCCCCCCHHHHH-----HHHHHcCCCc
Q 026004 10 FTLAEIKEMESMYKE---IGEASLTQEYCK-----ALATSFSFSA 46 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~---~~~~y~~~~~rq-----~LA~~f~lS~ 46 (245)
+|++|+++|+++|.. .++.+++..+.. .+...++..+
T Consensus 14 ~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~ 58 (195)
T 1qv0_A 14 DNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATP 58 (195)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCH
T ss_pred CCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCc
Confidence 499999999999986 467889988877 4556667654
No 243
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=34.02 E-value=26 Score=27.22 Aligned_cols=56 Identities=5% Similarity=0.128 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCc---------ccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSA---------SRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~---------~r~Gk~~v~~~QVk~WFQ 64 (245)
+.||++|+++|.++|.. .++.+++..+...+ ..++..+ +..|.-.|+..+...++.
T Consensus 21 ~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~~~~~~l~~~~D~d~dg~i~~~EF~~~~~ 88 (202)
T 2bec_A 21 TGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLA 88 (202)
T ss_dssp HCCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHSTTHHHHHHTTSCSSCCCCCHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCCccHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 46899999999999987 36789999888776 5555432 112333456666544444
No 244
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=33.72 E-value=78 Score=25.23 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHH-cCCCc
Q 026004 8 PDFTLAEIKEMESMYKE---IGEASLTQEYCKALATS-FSFSA 46 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~-f~lS~ 46 (245)
..||++|+.+|.++|.. +++.+++..+...+-.. ++..+
T Consensus 40 ~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~ 82 (219)
T 3cs1_A 40 REKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDE 82 (219)
T ss_dssp CSSSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCc
Confidence 56899999999999987 45778998777765554 67644
No 245
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=33.23 E-value=45 Score=30.38 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=36.6
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.|-.||-..++-.-.=|++-.. ..| ..|+|+|.|..++.|.|+++.
T Consensus 251 gmkLEAvD~~~p~licvATV~~----v~g-~~l~v~fDgw~~~~d~w~~~~ 296 (324)
T 3ut1_A 251 KMKLEVVDKRNPMFIRVATVAD----TDD-HRVKVHFDGWNNCYDYWIDAD 296 (324)
T ss_dssp TCEEEEECSSSTTCEEEEEEEE----ECS-SEEEEEETTSCGGGCEEEETT
T ss_pred CCeeeccCCCCCCceeEEEEEE----ecC-CEEEEEeCCCCCCCCEEEeCC
Confidence 4789999999988777775432 234 379999999999999999854
No 246
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=31.37 E-value=80 Score=25.46 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcC
Q 026004 8 PDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFS 43 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~ 43 (245)
+.||.+||.+|-+.|... ++.+++..+...+-..++
T Consensus 46 ~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~ 82 (224)
T 1s1e_A 46 TNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFF 82 (224)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhc
Confidence 468999999999999886 678888877777766654
No 247
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=31.36 E-value=61 Score=31.02 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=39.0
Q ss_pred ccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEccCCccccccccceeecc
Q 026004 179 VKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKVERLCCRP 243 (245)
Q Consensus 179 ~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ic~rp 243 (245)
..+.+|+.+++... +..||-|.|..|.. . -.+.|.|.+=.+.+.|++.+|..-|
T Consensus 410 ~~~~~G~~c~a~~~---d~~wyRa~I~~v~~----~----~~~~V~fvDyGn~e~v~~~~Lr~l~ 463 (570)
T 3bdl_A 410 YAPRRGEFCIAKFV---DGEWYRARVEKVES----P----AKIHVFYIDYGNREVLPSTRLGTLS 463 (570)
T ss_dssp CCCCTTCEEEEECT---TSCEEEEEEEEEEE----T----TEEEEEETTTCCEEEECGGGEECCC
T ss_pred cCCCcCCEEEEEEC---CCCEEEEEEEEEcC----C----CeEEEEEEeCCCeEEEEHHHCccCC
Confidence 45779998776443 34799999999985 1 2467777777777778888886554
No 248
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=31.09 E-value=57 Score=24.70 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=24.8
Q ss_pred EeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCc
Q 026004 116 FEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTE 156 (245)
Q Consensus 116 fEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~ee 156 (245)
=.||= .|+.||...... ..|.....|.|-+ |..+
T Consensus 28 VlArW-~D~~yYPAkI~s-----V~~~~~YtV~F~D-G~~e 61 (85)
T 3qii_A 28 VLACW-SDCRFYPAKVTA-----VNKDGTYTVKFYD-GVVQ 61 (85)
T ss_dssp EEEEC-TTSCEEEEEEEE-----ECTTSEEEEEETT-SCEE
T ss_pred EEEEe-CCCCEeeEEEEE-----ECCCCeEEEEEeC-CCeE
Confidence 34777 999999999643 3454579999987 5543
No 249
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=30.99 E-value=23 Score=28.91 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.3
Q ss_pred CceeEEEEecCCCCCccccccc
Q 026004 141 GELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 141 g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
+.+...|+|.|+..--||||..
T Consensus 73 ~~~~Y~VHY~GWn~~WDEWV~e 94 (130)
T 3e9g_A 73 NGKCFFIHYQGWKSSWDEWVGY 94 (130)
T ss_dssp TSCEEEEEETTSCGGGCEEEET
T ss_pred cCceEEEEeCCCCCChhhccCH
Confidence 4468999999999999999973
No 250
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=30.30 E-value=28 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+|+|. ..|..|..+++
T Consensus 21 ~~~lA~~~gis~----------~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSN----------VAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCCCH----------HHHHHHHcCCC
Confidence 578999999988 88999998753
No 251
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=29.95 E-value=33 Score=22.66 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhh
Q 026004 11 TLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQS 61 (245)
Q Consensus 11 T~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~ 61 (245)
|+++.+++..+|.. .++.+++..+...+...++. ...++..+++.
T Consensus 2 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~ 49 (83)
T 1yx7_A 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDA------YKALSKDKVKE 49 (83)
T ss_dssp CSCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTT------CTTTTTTTTHH
T ss_pred CccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcc------ccCCCHHHHHH
Confidence 34455667777765 46789999888888888772 12234577777
No 252
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=29.89 E-value=39 Score=26.27 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=20.8
Q ss_pred EeeeeecccCCCCceeEEEEEEccCCccccccc
Q 026004 204 VLDIQRRVHDTEGCQCIFVVRYDHDFSEEQVKV 236 (245)
Q Consensus 204 V~~v~r~~Hd~~~C~C~F~Vr~~h~~~ee~v~~ 236 (245)
|..|+-+.|+. +.+|.|+||= |++.+..+.
T Consensus 63 i~~i~V~~h~~-~srCFfvvR~--DGt~~DFSy 92 (104)
T 2k0m_A 63 VRNFEVRSADY-GTQCFWILRT--DGSEERFSY 92 (104)
T ss_dssp EEEEEEEESSS-SCEEEEEEET--TSCEEECCG
T ss_pred cceEEEecCCC-CCcEEEEEEe--CCCeeeeeH
Confidence 56677777865 8999999974 455555443
No 253
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=29.61 E-value=29 Score=22.04 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+|.|. ..|..|..+++
T Consensus 17 ~~~lA~~~gis~----------~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSR----------QTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSC
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 478999999988 88999998763
No 254
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=29.45 E-value=33 Score=27.84 Aligned_cols=38 Identities=5% Similarity=-0.048 Sum_probs=29.1
Q ss_pred CcCCCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcC
Q 026004 6 SWPDFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFS 43 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~ 43 (245)
.+..+|.+|+.+|.++|... ++.+++..+...+-..++
T Consensus 41 ~~~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 81 (220)
T 3sjs_A 41 LLNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGG 81 (220)
T ss_dssp GGGGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGGG
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC
Confidence 46789999999999999864 567888777666655554
No 255
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=29.05 E-value=59 Score=24.89 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 11 TLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 11 T~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+++|+.+|+++|... ++.+++..+...+-..++.++
T Consensus 34 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~ 72 (180)
T 3mse_B 34 INNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKK 72 (180)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCH
Confidence 378899999999864 568899988888888888765
No 256
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=28.97 E-value=57 Score=24.20 Aligned_cols=34 Identities=6% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHcC
Q 026004 10 FTLAEIKEMESMYKEI----GEASLTQEYCKALATSFS 43 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~----~~~y~~~~~rq~LA~~f~ 43 (245)
+|+.++.+|+.+|... ++.+++..+...+...++
T Consensus 2 ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~ 39 (185)
T 2sas_A 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYK 39 (185)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHH
Confidence 6788999999998765 667888887777766655
No 257
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=28.59 E-value=57 Score=29.68 Aligned_cols=46 Identities=22% Similarity=0.487 Sum_probs=36.3
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~ 163 (245)
.|-+||-..++-...-|++-.. ..|. .|+|+|.|..++.|.|++..
T Consensus 256 gmKLEavD~~~p~~ic~AtV~~----v~~~-~l~v~fDgw~~~~d~w~~~d 301 (331)
T 1oz2_A 256 NMKLEAVDRRNPALIRVASVED----VEDH-RIKIHFDGWSHGYDFWIDAD 301 (331)
T ss_dssp TCEEEEECSSSTTCEEEEEEEE----ECSS-EEEEEETTBCGGGCEEEETT
T ss_pred CceeEeecccCCCcEEeeEEEE----EcCC-EEEEEeCCCCCcCCEEEECC
Confidence 4888999999998777765332 2454 69999999999999999854
No 258
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=28.35 E-value=1.1e+02 Score=24.42 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=28.6
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEEEc-cCCccc
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVRYD-HDFSEE 232 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr~~-h~~~ee 232 (245)
.+.+|+++++.- .. +..||-|.|.++.... .+.|.|. .|+.+.
T Consensus 47 ~~~~G~~c~A~~-~~-d~~wyRa~I~~~~~~~--------~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 47 DLKEGALCVAQF-PE-DEVFYRAQIRKVLDDG--------KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCCTTCEEEEEE-TT-TTEEEEEEEEEECSTT--------CEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEE-CC-CCcEEEEEEEEECCCC--------EEEEEEEecCCeEE
Confidence 678999887633 22 4489999999987421 4566664 455544
No 259
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=28.18 E-value=78 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHcCCCc
Q 026004 9 DFTLAEIKEMESMYKEI---GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~---~~~y~~~~~rq~LA~~f~lS~ 46 (245)
.+|++|+.+|.++|... ++.+++..+...+-..++...
T Consensus 45 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~ 85 (191)
T 3k21_A 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL 85 (191)
T ss_dssp HCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCc
Confidence 47889999999999864 567899988888888887654
No 260
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=28.14 E-value=82 Score=21.92 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcC-CCcccCCCCcCCcchhhhhhhcc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFS-FSASRAARPAITWLQVQSWFRDK 66 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~-lS~~r~Gk~~v~~~QVk~WFQNR 66 (245)
..||++|-+.|.+++...++ .=..||..|. -|+ .||++-|++-
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~------~W~~Ia~~~~~Rt~----------~q~k~r~~~~ 53 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGR------RWTKISKLIGSRTV----------LQVKSYARQY 53 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCS------CHHHHHHHHSSSCH----------HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCc------CHHHHHHHcCCCCH----------HHHHHHHHHH
Confidence 46999999999999999754 3577888873 444 8999766654
No 261
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.05 E-value=47 Score=24.44 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
..+|.++..++-.++.. +. -..++|+.||+|. ..|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~--G~-----s~~~ia~~lgis~----------~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL--NV-----SLHEMSRKISRSR----------HCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT--TC-----CHHHHHHHHTCCH----------HHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHHc
Confidence 46888988888887754 22 2578999999988 889999974
No 262
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.56 E-value=33 Score=22.20 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhcccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQK 68 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~ 68 (245)
..+||+.+|+|. ..|..|..+++.
T Consensus 19 q~~lA~~~gis~----------~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQ----------QSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTCCS
T ss_pred HHHHHHHhCCCH----------HHHHHHHcCCCC
Confidence 578999999988 889999997643
No 263
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=27.48 E-value=74 Score=23.12 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=24.3
Q ss_pred cccccccCCceEEEeeecCCceeEEeeEEeeeee
Q 026004 176 SECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQR 209 (245)
Q Consensus 176 ~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r 209 (245)
.+..+..+|+.||+-- .+-+||-|.|..|.-
T Consensus 9 ~~~~~f~vGddVLA~w---tDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 9 KPACKFEEGQDVLARW---SDGLFYLGTIKKINI 39 (66)
T ss_dssp CCCCCSCTTCEEEEEC---TTSCEEEEEEEEEET
T ss_pred cccccccCCCEEEEEE---ccCcEEEeEEEEEcc
Confidence 3456789999999644 355899999999974
No 264
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=27.45 E-value=54 Score=29.87 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=34.6
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCcccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVN 161 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~ 161 (245)
.|-+||--..+-..+=|++-.. + .|. .|+|+|.|..+..|-|++
T Consensus 152 GmKLEavD~~np~~icvATV~~--v--~g~-r~~v~~Dg~~~~~D~w~~ 195 (331)
T 1oz2_A 152 GMKLEAVDRMNPSLVCVASVTD--V--VDS-RFLVHFDNWDDTYDYWCD 195 (331)
T ss_dssp TCEEEEECTTSTTCEEEEEEEE--E--ETT-EEEEEETTSCGGGCEEEC
T ss_pred ccEEEeccCCCCCcEEEEEEEE--e--eCC-EEEEEeCCCCCccCEEEe
Confidence 3888999999887777775432 2 244 699999999999999987
No 265
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.43 E-value=33 Score=22.73 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccccccc
Q 026004 5 DSWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQ 71 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k 71 (245)
.....+|+.|.+-|.-+ .+ .+ ...++|+.+|+|+ .-|+.+.++=+.+.+
T Consensus 7 ~~~~~L~~~e~~il~~~-~~---g~----s~~eIA~~l~is~----------~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 7 QSKPLLTKREREVFELL-VQ---DK----TTKEIASELFISE----------KTVRNHISNAMQKLG 55 (74)
T ss_dssp -CCCCCCHHHHHHHHHH-TT---TC----CHHHHHHHHTSCH----------HHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHH-Hc---CC----CHHHHHHHHCCCH----------HHHHHHHHHHHHHHC
Confidence 45677999999888774 22 22 3578999999998 889888876455543
No 266
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=27.17 E-value=51 Score=25.00 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=27.7
Q ss_pred CcCCCCHHHHHHHHHHHHHh--------C-C--CCCCHHHHHHHHHHcCC
Q 026004 6 SWPDFTLAEIKEMESMYKEI--------G-E--ASLTQEYCKALATSFSF 44 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~--------~-~--~y~~~~~rq~LA~~f~l 44 (245)
-.+.||+.|+.+|.++|... + + .+++..+... -..++.
T Consensus 10 ~~~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~ 58 (183)
T 1dgu_A 10 DLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKA 58 (183)
T ss_dssp CCCSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSS
T ss_pred HHcCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhc
Confidence 35679999999999999984 3 4 7888766655 334443
No 267
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=26.97 E-value=1.2e+02 Score=19.50 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCc
Q 026004 10 FTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
.+...|..+|+ +...|+.+...+||+.|+++.
T Consensus 35 is~~~i~~~e~-----g~~~~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 35 WKAVVVGSYER-----GDRAVTVQRLAELADFYGVPV 66 (71)
T ss_dssp SCHHHHHHHHH-----TCSCCCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHC-----CCCCCCHHHHHHHHHHHCcCH
Confidence 34444444443 346788899999999999876
No 268
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=26.79 E-value=12 Score=25.62 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=26.8
Q ss_pred eeeecceeeeeecCce-eEEEEecCCCCCcccccccc
Q 026004 128 DVASFLTYRVTCAGEL-EVRVRFSGFNNTEDEWVNVK 163 (245)
Q Consensus 128 dV~~fl~~R~~~~g~~-el~Vrf~gF~~eeDEw~~~~ 163 (245)
.|.--|.||+...|.. +..|+..|| +++-|-+..
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~ 36 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQD 36 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTC
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchH
Confidence 3556688897766887 899999998 678887654
No 269
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=26.65 E-value=1.2e+02 Score=21.39 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
..||.++..+.=+++.. +. -..+||..||+|. ..|..|...
T Consensus 21 ~~ys~e~k~~~v~~~~~--g~-----s~~~iA~~~gIs~----------sTl~rW~k~ 61 (87)
T 2elh_A 21 RSLTPRDKIHAIQRIHD--GE-----SKASVARDIGVPE----------STLRGWCKN 61 (87)
T ss_dssp SSCCHHHHHHHHHHHHH--TC-----CHHHHHHHHTCCH----------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHC--CC-----CHHHHHHHHCcCH----------HHHHHHHHH
Confidence 47888887666566643 21 2568999999988 889999853
No 270
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=26.59 E-value=28 Score=27.15 Aligned_cols=39 Identities=3% Similarity=0.006 Sum_probs=22.1
Q ss_pred CCcCCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcC
Q 026004 5 DSWPDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFS 43 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~ 43 (245)
.....||++|+.+|.++|.. +++.+++..+...+...++
T Consensus 25 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~ 66 (208)
T 2hpk_A 25 FNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMR 66 (208)
T ss_dssp CC---------CHHHHHHHHHCTTCSSEECHHHHTHHHHHHH
T ss_pred ccHHHcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34578999999999999986 3567888877776666554
No 271
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=26.54 E-value=48 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.6
Q ss_pred cccCCceEEEeeecCCceeEEeeEEeee
Q 026004 180 KVNVGDLVLCYQEREDQAVYCDAHVLDI 207 (245)
Q Consensus 180 ~v~~G~~v~cf~~~~~~~~yyDA~V~~v 207 (245)
...+|..|+||+.+. -|.|.|++|
T Consensus 7 ~f~~gE~VlcfHg~~----~YeAKIl~i 30 (130)
T 3e9g_A 7 EFALGGRCLAFHGPL----MYEAKILKI 30 (130)
T ss_dssp CCCTTCEEEEEETTE----EEEEEEEEE
T ss_pred cccCCCEEEEEeCCc----ceeeEEEEe
Confidence 567999999999753 599999999
No 272
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=26.41 E-value=47 Score=23.69 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCc
Q 026004 10 FTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+|++|+.++=+.|-.+++.+++......+...++...
T Consensus 2 ls~~el~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~ 38 (145)
T 2bl0_B 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNP 38 (145)
T ss_dssp CCHHHHHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHhCCCCcCccCHHHHHHHHHHhCCCC
Confidence 6788844443344345677888888777777777644
No 273
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.26 E-value=36 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+|.|. ..|..|..+++
T Consensus 26 ~~~lA~~~gis~----------~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSE----------NTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999988 88999998763
No 274
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=26.13 E-value=16 Score=28.77 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCC
Q 026004 8 PDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSF 44 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~l 44 (245)
..||++|+++|.++|.. +++.+++..+...+-..++.
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~ 41 (188)
T 1s6i_A 2 ERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGS 41 (188)
T ss_dssp CSSSCTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCC
Confidence 46788888888888885 35667887777666666654
No 275
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.00 E-value=44 Score=22.51 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHh
Q 026004 9 DFTLAEIKEMESMYKEI 25 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~ 25 (245)
.|+|+|++.||..++..
T Consensus 16 gfspeelaaleselqal 32 (48)
T 1g6u_A 16 GFSPEELAALESELQAL 32 (48)
T ss_dssp TCSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 69999999999988764
No 276
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.97 E-value=65 Score=20.33 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 12 LAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 12 ~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
+++..++-.++.+ + + ...+||+.||+|. .-|..|.+
T Consensus 18 ~~~~~~i~~l~~~--g-~----s~~eIA~~lgis~----------~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM--G-Y----TVQQIANALGVSE----------RKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT--T-C----CHHHHHHHHTSCH----------HHHHHHHT
T ss_pred HHHHHHHHHHHHc--C-C----CHHHHHHHHCcCH----------HHHHHHHH
Confidence 6666666666543 2 2 3668999999998 88888875
No 277
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.94 E-value=1.5e+02 Score=21.36 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHcCCCc
Q 026004 28 ASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 28 ~y~~~~~rq~LA~~f~lS~ 46 (245)
..|+.+...+||+.|++++
T Consensus 61 ~~~s~~~l~kIa~~L~v~~ 79 (88)
T 3t76_A 61 ENVSLTVLLAICEYLNCDF 79 (88)
T ss_dssp CCCCHHHHHHHHHHHTCCG
T ss_pred CCcCHHHHHHHHHHHCcCH
Confidence 3456666666666666655
No 278
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=25.80 E-value=34 Score=23.41 Aligned_cols=46 Identities=9% Similarity=0.030 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHH---HHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 8 PDFTLAEIKEMES---MYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 8 ~~FT~~Ql~eMEk---~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+++.+...++. .++..-... ...+||+.+|+|. ..|..|-.+++
T Consensus 4 ~~~~~~~~~~~~~~g~~l~~~R~~~----sq~~lA~~~gis~----------~~is~~E~g~~ 52 (86)
T 2ofy_A 4 VPLTAEELERGQRLGELLRSARGDM----SMVTVAFDAGISV----------ETLRKIETGRI 52 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHTCCH----------HHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHhCCCH----------HHHHHHHcCCC
Confidence 4467776654433 233321122 4569999999988 88999998764
No 279
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.57 E-value=37 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+|+|. ..|..|..+++
T Consensus 21 ~~~lA~~~gis~----------~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSN----------VAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999988 88999998763
No 280
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=25.11 E-value=28 Score=27.45 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.0
Q ss_pred cccCCCCcCCcchhhhhhhcc
Q 026004 46 ASRAARPAITWLQVQSWFRDK 66 (245)
Q Consensus 46 ~~r~Gk~~v~~~QVk~WFQNR 66 (245)
--|+|..++|- .|+.|.||=
T Consensus 42 glragsmalqg-dvkvwmqnl 61 (127)
T 2jpf_A 42 GLRAGSMALQG-DVKVWMQNL 61 (127)
T ss_dssp CCSSSSSSSCH-HHHHHHHHH
T ss_pred hhhhhhhhhcc-cHHHHHHHH
Confidence 34889999874 599999983
No 281
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=24.99 E-value=37 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+|.|. ..|..|..+++
T Consensus 14 q~~lA~~lgvs~----------~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQ----------SAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHHHTC
T ss_pred HHHHHHHHCCCH----------HHHHHHHHCCC
Confidence 578999999988 88999998764
No 282
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=24.94 E-value=1e+02 Score=21.59 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=24.4
Q ss_pred CceeeeeecceeeeeecCceeEEEEecCCCCCccccccccccccccCCCccccccccccCCceEEE
Q 026004 124 DAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNVKTAVRQRSIPLEQSECVKVNVGDLVLC 189 (245)
Q Consensus 124 ~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~~~~~R~rS~ple~~eC~~v~~G~~v~c 189 (245)
++||.|. +..|. .+..+-.| .||...+ .+.+||.|+.
T Consensus 18 ~~~y~V~-------~~~g~-~~~~~i~G-------------k~Rk~~i--------~i~vGD~V~v 54 (71)
T 1ah9_A 18 NTMFRVE-------LENGH-VVTAHISG-------------KMRKNYI--------RILTGDKVTV 54 (71)
T ss_dssp SSEEEEE-------ETTSC-EEEEEECS-------------SGGGTTC--------CCCTTCEECC
T ss_pred CcEEEEE-------ECCCC-EEEEEEcc-------------eEeccCc--------cCCCCCEEEE
Confidence 4899987 23564 67777777 4554433 2359999984
No 283
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=24.65 E-value=22 Score=27.74 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=25.8
Q ss_pred CCcCCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCC
Q 026004 5 DSWPDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSF 44 (245)
Q Consensus 5 ~~~~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~l 44 (245)
+.+..+++.|+.+|.+ |.. +++.+++..+...+-..++.
T Consensus 22 ~~~~~~~~~~~~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~ 63 (198)
T 1juo_A 22 PGGPAFPGQTQDPLYG-YFAAVAGQDGQIDADELQRCLTQSGI 63 (198)
T ss_dssp -----CTTCCCCTTHH-HHHHHHTTTTEECHHHHHHHHHHHTT
T ss_pred CCCCCCCccccHHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcc
Confidence 3444577778877777 653 46778888888888888776
No 284
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=24.51 E-value=41 Score=21.57 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+++|. ..|..|..+++
T Consensus 17 q~~lA~~~gis~----------~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQ----------QSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSC
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999988 88999998764
No 285
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=24.39 E-value=90 Score=29.54 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=57.8
Q ss_pred ceeEeecccCC----CceeeeeecceeeeeecCceeEEEEecCCCC--Cccccccccc--------------cc------
Q 026004 113 ELAFEARSSKD----DAWYDVASFLTYRVTCAGELEVRVRFSGFNN--TEDEWVNVKT--------------AV------ 166 (245)
Q Consensus 113 ~~efEArs~~D----~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~--eeDEw~~~~~--------------~~------ 166 (245)
.|-+|+....+ +..+-+.+ +...|- -|++||.||++ ..|=|+|+.. .+
T Consensus 46 GmklEv~~~~~~~~~~~yWvA~V-----~~~~G~-rllLry~G~~~d~~~DFW~~~~s~~ihpvGwc~~~~~~l~PP~~i 119 (437)
T 3feo_A 46 NVRVEVPNTDCSLPTKVFWIAGI-----VKLAGY-NALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTI 119 (437)
T ss_dssp TCEEEEECSCC----CCEEEEEE-----EEEETT-EEEEEETTCTTCCTTCEEEETTSTTCEETTHHHHHTCCBCCCGGG
T ss_pred CCEEEEecCCCCCCcCceEEEEE-----eeecce-EEEEEecccCCCCCCCcceeCCCccccccccHhhcCCEecCCccc
Confidence 46667777655 23333332 123453 69999999986 5689988111 11
Q ss_pred ----------------cccCCCccc------cccccccCCceEEEeeecCCceeEEeeEEeeeeecccCCCCceeEEEEE
Q 026004 167 ----------------RQRSIPLEQ------SECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRRVHDTEGCQCIFVVR 224 (245)
Q Consensus 167 ----------------R~rS~ple~------~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~~Hd~~~C~C~F~Vr 224 (245)
-.+++|..- +....+++|-.|-+....+ ...|.=|.|..|. --++.|+
T Consensus 120 ~~~~~~W~~yL~~~ltga~t~P~~~f~~~~~~~~~~F~~GmkLEv~d~~~-~~~~~vAtV~~v~---------G~rl~Lr 189 (437)
T 3feo_A 120 QHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRH-LCRTRVAVVESVI---------GGRLRLV 189 (437)
T ss_dssp TTTCSCHHHHHHHHHTTCCCCCTTHHHHHHHHTCCSCCTTEEEEEEETTE-EEEEEEEEEEEEE---------TTEEEEE
T ss_pred ccccccHHHHHHHHhhcCccCChhHhhccccccCCCCCCCCEEEEecCCC-CcceEEEEEEEEE---------CCEEEEE
Confidence 134444332 2245689999988754433 4567767777664 3456666
Q ss_pred Ecc
Q 026004 225 YDH 227 (245)
Q Consensus 225 ~~h 227 (245)
|+.
T Consensus 190 y~g 192 (437)
T 3feo_A 190 YEE 192 (437)
T ss_dssp ESS
T ss_pred EeC
Confidence 654
No 286
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=24.23 E-value=60 Score=23.11 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 9 DFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 9 ~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
.+|.++..++-.++.+ +. + ..++|..|++|. ..|..|.+.
T Consensus 17 ~~s~~~r~~i~~~~~~--g~--s---~~~ia~~lgis~----------~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD--GI--R---PCVISRQLRVSH----------GCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT--TC--C---HHHHHHHHTCCH----------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc--CC--C---HHHHHHHHCcCH----------HHHHHHHHH
Confidence 5888888888777754 22 2 468999999988 889999874
No 287
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.10 E-value=61 Score=24.50 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 10 FTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
|+++|....+++...... ++....+||+.|++++ +.+..|++
T Consensus 1 ~~~~~~~l~~~i~~~~~~---~p~~~~~la~~~~~~~----------~~~~~~l~ 42 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGD---EPWWVRDLAKETGTDE----------QAMRLTLR 42 (121)
T ss_dssp CCHHHHHHHHHHGGGCSS---SCEEHHHHHHHTTCCH----------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCCCH----------HHHHHHHH
Confidence 567787777777776532 2224448999999988 88888876
No 288
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=23.83 E-value=95 Score=29.62 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=51.8
Q ss_pred ceeEeecccCC----CceeeeeecceeeeeecCceeEEEEecCCCC--Cccccccccc----------------------
Q 026004 113 ELAFEARSSKD----DAWYDVASFLTYRVTCAGELEVRVRFSGFNN--TEDEWVNVKT---------------------- 164 (245)
Q Consensus 113 ~~efEArs~~D----~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~--eeDEw~~~~~---------------------- 164 (245)
.|-+|+....+ ...+-+.+ +-..|- -|++||.||++ ..|=|+|+..
T Consensus 44 GmklEv~d~~~~~~~~~~WvAtV-----~~~~G~-rL~Lry~G~~~d~~~DFW~~~~s~~ihPvGWc~~~g~~L~PP~~i 117 (456)
T 3f70_A 44 GMKVEVLNSDAVLPSRVYWIASV-----IQTAGY-RVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAINSKILVPPRTI 117 (456)
T ss_dssp TCEEEEECCSCCC--CCEEEEEE-----EEEETT-EEEEEETTCTTCCTTCEEEETTSTTEECTTHHHHTTCCBCCCTTT
T ss_pred CCEEEEecCCCCCCccceEEEEE-----eeecce-eEEEEecccCCCCcCCcceeCCCCceeecccHHhcCcEecCCccc
Confidence 46677787665 23333332 123453 69999999984 6799988110
Q ss_pred --------------cccccCCCcc------ccccccccCCceEEEeeecCCceeEEeeEEeeee
Q 026004 165 --------------AVRQRSIPLE------QSECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQ 208 (245)
Q Consensus 165 --------------~~R~rS~ple------~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~ 208 (245)
-.-.+++|.+ ...=+.+++|-.|-+....+ -..++=|.|.+|.
T Consensus 118 ~~~~~~W~~~L~k~l~ga~~~P~~f~~~~~~~~~~~F~~GmkLE~vD~~~-~~~~~vAtV~~v~ 180 (456)
T 3f70_A 118 HAKFTDWKGYLMKRLVGSRTLPVDFHIKMVESMKYPFRQGMRLEVVDKSQ-VSRTRMAVVDTVI 180 (456)
T ss_dssp GGGCSCHHHHHHHHHTTCCBCCTTHHHHHHHHTSCSSCTTCEEEEECTTC-TTCEEEEEEEEEE
T ss_pred ccCcccHHHHHHHHhccCccCCHHHhhccccccCCCCCCCCEEEEECCCC-CcceEEEEEEEEE
Confidence 0122344443 11124578888888765544 4455667777765
No 289
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=23.45 E-value=68 Score=30.39 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=37.0
Q ss_pred ceeEeecccCCCceeeeeecceeeeeecCceeEEEEecCCCCCccccccc
Q 026004 113 ELAFEARSSKDDAWYDVASFLTYRVTCAGELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 113 ~~efEArs~~D~AWYdV~~fl~~R~~~~g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
.|-+||-...+-...=|++-.. +. |. .|+|+|-|..++.|.|+++
T Consensus 366 GMKLEAvD~~np~~IcvATV~~--v~--~~-~l~v~fDgw~~~~d~w~~~ 410 (437)
T 3feo_A 366 GMKLEAVDLMEPRLICVATVTR--II--HR-LLRIHFDGWEEEYDQWVDC 410 (437)
T ss_dssp TCEEEEECTTSTTCEEEEEEEE--EE--TT-EEEEEETTSCGGGCEEEET
T ss_pred CCEEEeecCCCCCcEEEEEEeE--Ec--CC-EEEEEECCCCCcCCeEEeC
Confidence 4789999999999888886543 32 43 7999999999999999874
No 290
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=23.42 E-value=41 Score=28.00 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=33.8
Q ss_pred Cceeeeeecceeeee----ecCceeEEEEecCCCCCccccccc
Q 026004 124 DAWYDVASFLTYRVT----CAGELEVRVRFSGFNNTEDEWVNV 162 (245)
Q Consensus 124 ~AWYdV~~fl~~R~~----~~g~~el~Vrf~gF~~eeDEw~~~ 162 (245)
..|+.|.--|.+|+. ..|..+..|++.|++.++--|-..
T Consensus 118 ~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~ 160 (177)
T 2h1e_A 118 EEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENA 160 (177)
T ss_dssp HHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEH
T ss_pred cccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccCh
Confidence 478999999999984 678899999999999999999764
No 291
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=23.26 E-value=16 Score=24.61 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKE---IGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
..+++.++.+|.++|.. .++.+++......+-..++.. ++..+|+..|+
T Consensus 15 ~~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~--------~~~~~~~~l~~ 66 (87)
T 1s6j_A 15 ERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSE--------LMESEIKDLMD 66 (87)
T ss_dssp SSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSS--------CCHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 34666677777777765 456778887777777666642 24466776665
No 292
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=23.22 E-value=1.2e+02 Score=20.03 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCCHHHHHHH--HHHHHHhCCCCCCHHHHHHH
Q 026004 9 DFTLAEIKEM--ESMYKEIGEASLTQEYCKAL 38 (245)
Q Consensus 9 ~FT~~Ql~eM--Ek~f~~~~~~y~~~~~rq~L 38 (245)
.+|++|++.| |+...+. |++++.++..+|
T Consensus 1 ~mtpe~~~~~~~~~ei~~R-NrpltDEeLD~m 31 (39)
T 3lqv_P 1 SMTPEQLQAWRWEREIDER-NRPLSDEELDAM 31 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHT
T ss_pred CCCHHHHHHHHhhccchhh-cCCCCHHHHHHh
Confidence 3788888765 8888776 699998877654
No 293
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.21 E-value=45 Score=21.97 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+|+|. ..|..|..+++
T Consensus 26 q~~lA~~~gis~----------~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHR----------TYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHTTCS
T ss_pred HHHHHHHHCCCH----------HHHHHHHCCCC
Confidence 578999999988 88999998763
No 294
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=23.01 E-value=1.4e+02 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCc
Q 026004 26 GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 26 ~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+...|+.+...+||+.|++++
T Consensus 49 g~~~~~~~~l~~l~~~l~~~~ 69 (74)
T 1y7y_A 49 GQRNVSLVNILKLATALDIEP 69 (74)
T ss_dssp TCSCCBHHHHHHHHHHTTSCG
T ss_pred CCCCCCHHHHHHHHHHhCcCH
Confidence 346788888888888888876
No 295
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=23.00 E-value=42 Score=25.91 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCC
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLT 31 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~ 31 (245)
++.|+..|.++|+++...+|+.|-.
T Consensus 29 ~sGf~~~er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 29 FLGFSDEEKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp EESCCHHHHHHHHHHHHHTTCEECC
T ss_pred EeCCCHHHHHHHHHHHHHcCCEECc
Confidence 5779999999999999999888865
No 296
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=22.92 E-value=51 Score=27.65 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=32.9
Q ss_pred Cceeeeeecceeeee--ecCceeEEEEecCCCCCcccccc
Q 026004 124 DAWYDVASFLTYRVT--CAGELEVRVRFSGFNNTEDEWVN 161 (245)
Q Consensus 124 ~AWYdV~~fl~~R~~--~~g~~el~Vrf~gF~~eeDEw~~ 161 (245)
..|+.|.--|.||.. ..|..+..|.+.|++.++.-|-.
T Consensus 128 ~e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~ 167 (187)
T 2b2y_A 128 KQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWED 167 (187)
T ss_dssp HHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEC
T ss_pred hhcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccc
Confidence 457889988999986 67889999999999999988976
No 297
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.88 E-value=95 Score=21.94 Aligned_cols=43 Identities=7% Similarity=0.298 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
..||+++..+.=+.+.... ..-..++|..||+|. ..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~-----g~s~~~ia~~~gIs~----------~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD-----GASLQQIANDLGINR----------VTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG-----GSCHHHHHHHHTSCH----------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-----CChHHHHHHHHCcCH----------HHHHHHHHH
Confidence 4688888766555553310 123679999999988 899999863
No 298
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=22.69 E-value=1.3e+02 Score=23.21 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCC
Q 026004 8 PDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSF 44 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~l 44 (245)
+.||..||.+|=+.|... ++.+++..+...+...++.
T Consensus 28 ~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~ 65 (207)
T 2d8n_A 28 TKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFP 65 (207)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCT
T ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcc
Confidence 347888888888888777 5788888777777777654
No 299
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.64 E-value=52 Score=23.74 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=35.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQAKS 74 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~k~ 74 (245)
+..+|+.|.+.|.-.++. ...+++|+.+|+|. .-|+++.++=+.|.+.+.
T Consensus 25 l~~Lt~~e~~vl~l~~~g--------~s~~eIA~~l~is~----------~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 25 LSGLTDQERTLLGLLSEG--------LTNKQIADRMFLAE----------KTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp --CCCHHHHHHHHHHHTT--------CCHHHHHHHHTCCH----------HHHHHHHHHHHHHHTCCC
T ss_pred HhcCCHHHHHHHHHHHcC--------CCHHHHHHHHCcCH----------HHHHHHHHHHHHHHcCCC
Confidence 446788888777765222 12478999999998 889998887677765543
No 300
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=22.61 E-value=95 Score=23.42 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHcCC
Q 026004 8 PDFTLAEIKEMESMYKEI-GEASLTQEYCKALATSFSF 44 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~-~~~y~~~~~rq~LA~~f~l 44 (245)
+.||.+||.++=+.|... ++.+++..+...+-..++.
T Consensus 20 ~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~ 57 (193)
T 1bjf_A 20 TDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFP 57 (193)
T ss_dssp SSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcC
Confidence 468888988888888876 6788888777777666543
No 301
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.21 E-value=50 Score=21.83 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhcc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDK 66 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNR 66 (245)
..+||+.+|+|. ..|..|..++
T Consensus 24 q~~lA~~~gis~----------~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNK----------TTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCH----------HHHHHHHTTS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCC
Confidence 568999999988 8899999876
No 302
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.07 E-value=1.4e+02 Score=21.47 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHc-CCCcccCCCCcCCcchhhhhhh
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSF-SFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f-~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
..+|.+|-..|++++...+. -+...=..||..+ |-|. +||+.=|+
T Consensus 19 ~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~vpGRT~----------~qcr~Ry~ 64 (73)
T 2cqr_A 19 EPWTQNQQKLLELALQQYPR--GSSDCWDKIARCVPSKSK----------EDCIARYK 64 (73)
T ss_dssp CCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGGCSSSCH----------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHcCCCCH----------HHHHHHHH
Confidence 46999999999999998532 1467789999999 4655 88885444
No 303
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.06 E-value=52 Score=23.88 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=33.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccc
Q 026004 6 SWPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKS 70 (245)
Q Consensus 6 ~~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~ 70 (245)
....||+.|.+.|.-++ + + ...++||+.+++|+ .-|++..++=+.|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~-~--G-----~s~~eIA~~L~iS~----------~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE-K--G-----FTNQEIADALHLSK----------RSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH-T--T-----CCHHHHHHHHTCCH----------HHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH-c--C-----CCHHHHHHHHCcCH----------HHHHHHHHHHHHHH
Confidence 35579999999887766 3 1 23689999999998 88888766544444
No 304
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.98 E-value=44 Score=23.48 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=34.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhcccccccc
Q 026004 7 WPDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRDKQKKSQA 72 (245)
Q Consensus 7 ~~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR~k~k~ 72 (245)
...+|+.|.+.|.-.+ + + ...+++|+.+|+|. ..|+++.++=+.|.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~-~--g-----~s~~eIA~~l~is~----------~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKLIA-Q--G-----LPNKMIARRLDITE----------STVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHHHT-T--T-----CCHHHHHHHHTSCH----------HHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHH-c--C-----CCHHHHHHHHCcCH----------HHHHHHHHHHHHHHcC
Confidence 4568888888887642 2 1 24679999999998 8899888765666543
No 305
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.95 E-value=78 Score=24.35 Aligned_cols=41 Identities=5% Similarity=-0.049 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCcccCCCCcCCcchhhhhhhc
Q 026004 8 PDFTLAEIKEMESMYKEIGEASLTQEYCKALATSFSFSASRAARPAITWLQVQSWFRD 65 (245)
Q Consensus 8 ~~FT~~Ql~eMEk~f~~~~~~y~~~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQN 65 (245)
..+|.++..++-.++.+ +. -..++|+.|++|. ..|..|.+.
T Consensus 24 ~~~s~e~r~~ii~l~~~--G~-----s~~~IA~~lgis~----------~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQ--GV-----RPCDISRQLRVSH----------GCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHH--TC-----CHHHHHHHHTCCS----------HHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHHH
Confidence 35888888888877765 22 3568899999988 899999974
No 306
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=21.63 E-value=2.2e+02 Score=22.85 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=38.6
Q ss_pred cccccccccCCceEEEeeecCCceeEEeeEEeeeeec--ccCCCCceeEEEEEEccCCccccccccc
Q 026004 174 EQSECVKVNVGDLVLCYQEREDQAVYCDAHVLDIQRR--VHDTEGCQCIFVVRYDHDFSEEQVKVER 238 (245)
Q Consensus 174 e~~eC~~v~~G~~v~cf~~~~~~~~yyDA~V~~v~r~--~Hd~~~C~C~F~Vr~~h~~~ee~v~~~~ 238 (245)
+..+++.+.+||+|.+-..|- -++=|+|++..-. ++...+ .+.|.|..++.-.-|+..+
T Consensus 5 ~~~~~~~~~~GDlVWaKvkGy---PwWPa~V~~~~~~~~~~~~~~---~~~V~FFG~~~~awv~~~~ 65 (147)
T 1khc_A 5 EYQDDKEFGIGDLVWGKIKGF---SWWPAMVVSWKATSKRQAMPG---MRWVQWFGDGKFSEISADK 65 (147)
T ss_dssp CCCSSSSCCTTCEEEEEETTT---EEEEEEEECGGGTTSCCCCTT---EEEEEETTTCCEEEEEGGG
T ss_pred ccCCCccCcCCCEEEEecCCc---CCCCEEeccchhhhcccCCCC---eEEEEEecCCCEEEEcHHH
Confidence 345678899999999765444 6788888875432 122234 5789998887654444443
No 307
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=21.25 E-value=80 Score=23.66 Aligned_cols=37 Identities=5% Similarity=0.044 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHh---CCCCCCHHHHH-----HHHHHcCCCc
Q 026004 10 FTLAEIKEMESMYKEI---GEASLTQEYCK-----ALATSFSFSA 46 (245)
Q Consensus 10 FT~~Ql~eMEk~f~~~---~~~y~~~~~rq-----~LA~~f~lS~ 46 (245)
.|++|+.+|+++|... ++.+++..+.. .+...++..+
T Consensus 10 ~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~ 54 (191)
T 1uhk_A 10 DNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATP 54 (191)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCH
T ss_pred CCHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcCCCc
Confidence 4899999999999864 56788888777 5555566544
No 308
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=21.07 E-value=63 Score=23.00 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHcCCCcccCCCCcCCcchhhhhhh
Q 026004 15 IKEMESMYKEIGEASLT-QEYCKALATSFSFSASRAARPAITWLQVQSWFR 64 (245)
Q Consensus 15 l~eMEk~f~~~~~~y~~-~~~rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQ 64 (245)
+..+.....++ +.+ .-...+||+.+++|+ ..+...|+
T Consensus 4 ~~~i~~~i~~~---~~~~~~~~~~lA~~~~~S~----------~~l~r~fk 41 (103)
T 3lsg_A 4 KELIQNIIEES---YTDSQFTLSVLSEKLDLSS----------GYLSIMFK 41 (103)
T ss_dssp HHHHHHHHHHH---TTCTTCCHHHHHHHTTCCH----------HHHHHHHH
T ss_pred HHHHHHHHHHH---ccCCCCCHHHHHHHHCcCH----------HHHHHHHH
Confidence 45556666664 333 345778999999998 77776666
No 309
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=20.83 E-value=40 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.9
Q ss_pred cccccccCCceEE--EeeecCCceeEE
Q 026004 176 SECVKVNVGDLVL--CYQEREDQAVYC 200 (245)
Q Consensus 176 ~eC~~v~~G~~v~--cf~~~~~~~~yy 200 (245)
..|..-+.||+-| |..+|+ +||
T Consensus 9 ercpnpregdwcchkcvpegk---rfy 32 (36)
T 4b2u_A 9 ERCPNPREGDWCCHKCVPEGK---RFY 32 (36)
T ss_dssp SBCCCGGGCCSSSSEEEEETT---EEE
T ss_pred ccCcCCCccCeeeecccccCc---eee
Confidence 4688999999988 888877 665
No 310
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=20.60 E-value=89 Score=23.60 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHcCC
Q 026004 12 LAEIKEMESMYKE---IGEASLTQEYCKALATSFSF 44 (245)
Q Consensus 12 ~~Ql~eMEk~f~~---~~~~y~~~~~rq~LA~~f~l 44 (245)
.+++.+|.++|.. .++.+++..+...+-..++.
T Consensus 44 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~ 79 (147)
T 1wy9_A 44 PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGV 79 (147)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC
Confidence 5777777777764 24567777666666666654
No 311
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.40 E-value=1e+02 Score=20.57 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCc
Q 026004 26 GEASLTQEYCKALATSFSFSA 46 (245)
Q Consensus 26 ~~~y~~~~~rq~LA~~f~lS~ 46 (245)
+...|+.....+||+.|+++.
T Consensus 38 g~~~p~~~~l~~ia~~l~v~~ 58 (77)
T 2k9q_A 38 SETAPVVVKYIAFLRSKGVDL 58 (77)
T ss_dssp CCSCCHHHHHHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHhCcCH
Confidence 345688899999999999977
No 312
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=20.20 E-value=55 Score=22.55 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcccCCCCcCCcchhhhhhhccc
Q 026004 35 CKALATSFSFSASRAARPAITWLQVQSWFRDKQ 67 (245)
Q Consensus 35 rq~LA~~f~lS~~r~Gk~~v~~~QVk~WFQNRR 67 (245)
..+||+.+|+|. ..|..|..+++
T Consensus 34 q~elA~~~gis~----------~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQ----------PRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTCG
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999988 88999998764
Done!