Query 026005
Match_columns 245
No_of_seqs 208 out of 589
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.2 0.013 4.4E-07 44.9 7.0 59 126-209 5-63 (89)
2 1wmh_B Partitioning defective- 96.2 0.012 4.2E-07 44.9 6.5 71 126-220 5-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 95.6 0.023 7.9E-07 44.4 5.9 62 126-210 4-80 (102)
4 2ktr_A Sequestosome-1; autopha 94.6 0.067 2.3E-06 42.9 6.1 62 126-210 19-95 (117)
5 1q1o_A Cell division control p 91.1 0.55 1.9E-05 36.5 6.5 75 127-220 5-86 (98)
6 1pqs_A Cell division control p 80.6 1.3 4.3E-05 32.8 3.2 57 145-220 8-65 (77)
7 1oey_J P40-PHOX, neutrophil cy 79.7 2.5 8.6E-05 33.3 4.8 41 144-210 28-68 (107)
8 2bkf_A Zinc-finger protein NBR 78.9 5 0.00017 30.5 6.1 55 128-208 7-61 (87)
9 1wj6_A KIAA0049 protein, RSGI 76.3 5.3 0.00018 31.2 5.7 66 127-220 14-79 (101)
10 1oey_A P67-PHOX, neutrophil cy 73.8 15 0.00053 27.4 7.6 71 127-224 5-78 (83)
11 3o27_A Putative uncharacterize 65.2 2.1 7.3E-05 31.2 1.1 23 185-207 37-59 (68)
12 1e8p_A Endoglucanase, dockerin 58.7 2.6 8.9E-05 28.6 0.5 13 194-206 20-32 (46)
13 2npt_A Dual specificity mitoge 38.8 55 0.0019 25.4 5.2 58 127-209 14-72 (106)
14 3brc_A Conserved protein of un 34.6 9.8 0.00033 31.7 0.4 10 9-18 101-110 (156)
15 2j4m_A Endoglucanase 45A; dock 32.1 10 0.00036 29.5 0.2 13 194-206 21-33 (100)
16 2i1s_A Hypothetical protein; m 24.9 57 0.0019 26.9 3.5 37 127-163 8-46 (188)
17 3c8c_A Methyl-accepting chemot 20.7 25 0.00086 27.5 0.5 35 189-223 203-238 (240)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.24 E-value=0.013 Score=44.86 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=45.7
Q ss_pred CcceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeE
Q 026005 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM 205 (245)
Q Consensus 126 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM 205 (245)
+.+=|||+..|.-+ -+.+...-+|++|...|.++|... .+..+++.|.|.|||+.
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCE
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcc
Confidence 35788999999744 444445679999999999999841 24468999999999997
Q ss_pred eccC
Q 026005 206 LVGD 209 (245)
Q Consensus 206 LVGD 209 (245)
-+-.
T Consensus 60 tisS 63 (89)
T 1vd2_A 60 TVSS 63 (89)
T ss_dssp ECCS
T ss_pred cccC
Confidence 6643
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.16 E-value=0.012 Score=44.90 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=53.8
Q ss_pred CcceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeE
Q 026005 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM 205 (245)
Q Consensus 126 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM 205 (245)
+..-||...|..--=-.||-....+|++|..-|+++|.. ....|++.|.|.|||++
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLl 60 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLL 60 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEE
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEe
Confidence 457789999888433455656778999999999999984 13468999999999999
Q ss_pred eccCC-Chhhhhhcce
Q 026005 206 LVGDV-PWDMFVDSCK 220 (245)
Q Consensus 206 LVGDv-PW~mFv~svK 220 (245)
-+=+. -..+=+.++|
T Consensus 61 pInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 61 PLTNDDSLHRALASGP 76 (86)
T ss_dssp ECCSHHHHHHHTTSSS
T ss_pred eecCHHHHHHHHHhCC
Confidence 88764 3444455666
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.55 E-value=0.023 Score=44.45 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=46.4
Q ss_pred CcceEEEEecCc----cccceeecCC-----------ccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCC
Q 026005 126 NVAFVKVSMDGA----PYLRKVDLKL-----------YKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG 190 (245)
Q Consensus 126 ~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~ 190 (245)
.++-||++..|. .=-|++-|.. ..+|++|...++++|... .+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-----------------------~~ 60 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-----------------------RP 60 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-----------------------CC
Confidence 367889998762 2346555532 248999999999999741 24
Q ss_pred CceeeEEEcCCCCeEeccCC
Q 026005 191 SDYVPTYEDKDGDWMLVGDV 210 (245)
Q Consensus 191 sey~ltYeDkeGDwMLVGDv 210 (245)
..|.+.|.|.|||+.-+-+.
T Consensus 61 ~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 61 GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp SCEEEEEECTTCCEEEECSH
T ss_pred CcEEEEEECCCCCEEEecCH
Confidence 57999999999999887764
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.57 E-value=0.067 Score=42.89 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=45.8
Q ss_pred CcceEEEEecCc----cccceeecC-----------CccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCC
Q 026005 126 NVAFVKVSMDGA----PYLRKVDLK-----------LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG 190 (245)
Q Consensus 126 ~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~ 190 (245)
.++-||++..|. .==|++-|. .-.+|++|...++++|... .+
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-----------------------~~ 75 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-----------------------RP 75 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-----------------------CC
Confidence 368899999752 223555554 1359999999999999741 24
Q ss_pred CceeeEEEcCCCCeEeccCC
Q 026005 191 SDYVPTYEDKDGDWMLVGDV 210 (245)
Q Consensus 191 sey~ltYeDkeGDwMLVGDv 210 (245)
..|.+.|.|.|||+.-+-..
T Consensus 76 ~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 76 GGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp SCEEEEEECTTCCEEEECSH
T ss_pred CcEEEEEECCCCCEEEecCH
Confidence 57999999999999877654
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.09 E-value=0.55 Score=36.48 Aligned_cols=75 Identities=15% Similarity=0.324 Sum_probs=54.5
Q ss_pred cceEEEEecCcc----c--cceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcC
Q 026005 127 VAFVKVSMDGAP----Y--LRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDK 200 (245)
Q Consensus 127 ~~~VKV~MdG~p----i--gRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDk 200 (245)
+.-|||+-+... + .+.|=+..--+|++|...+.+-|...+ + + + . .....+-|+|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~----~------------~-i-~~~~klkYkDE 65 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-N----N------------N-I-SPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-S----S------------C-C-CCCCCEEEECS
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-c----c------------c-c-cceeEEEEEcC
Confidence 467888877421 2 366667788899999999999998531 0 0 0 0 12468999999
Q ss_pred CCCeEeccC-CChhhhhhcce
Q 026005 201 DGDWMLVGD-VPWDMFVDSCK 220 (245)
Q Consensus 201 eGDwMLVGD-vPW~mFv~svK 220 (245)
|||+...++ .=|+|-+++++
T Consensus 66 dGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 66 DGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp SSCEEEECSHHHHHHHHHHHH
T ss_pred CCCEEEEcCHHHHHHHHHHHH
Confidence 999988876 58999888764
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=80.58 E-value=1.3 Score=32.82 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=41.7
Q ss_pred cCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccC-CChhhhhhcce
Q 026005 145 LKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD-VPWDMFVDSCK 220 (245)
Q Consensus 145 L~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD-vPW~mFv~svK 220 (245)
...--+|++|...+.+-|..+ .+.+ ......+-|+|.|||+...++ .=|+|-++++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-----~~~~--------------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-----HNNN--------------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-----TSSC--------------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-----cccc--------------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 445568999999999999852 1111 013568999999999987765 68999988774
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=79.72 E-value=2.5 Score=33.31 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=33.3
Q ss_pred ecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccCC
Q 026005 144 DLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDV 210 (245)
Q Consensus 144 DL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGDv 210 (245)
||+.--.|.+|..-..+-|... +-+|-|.|.|||+.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEEcch
Confidence 6777789999999999999841 3488899999999866554
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=78.90 E-value=5 Score=30.51 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=41.4
Q ss_pred ceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEec
Q 026005 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV 207 (245)
Q Consensus 128 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV 207 (245)
.-+||..-|...=--|.-..--++++|...+..+|+. +.+++.|-|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L--------------------------~~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEEcCCCCEEEE
Confidence 4578999998544446444467899998888888874 14799999999998766
Q ss_pred c
Q 026005 208 G 208 (245)
Q Consensus 208 G 208 (245)
=
T Consensus 61 ~ 61 (87)
T 2bkf_A 61 N 61 (87)
T ss_dssp C
T ss_pred e
Confidence 3
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.33 E-value=5.3 Score=31.21 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=48.3
Q ss_pred cceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEe
Q 026005 127 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWML 206 (245)
Q Consensus 127 ~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwML 206 (245)
..-+||..-|...=--|.-..--.+++|...|..+|+. + .++|.|.|.|||-.-
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L------------------------~--~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------N--TIQIKYLDEENEEVS 67 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC------------------------S--SBCCEEECTTSCEEC
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC------------------------C--ceEEEEecCCCCEEE
Confidence 45679999998654456444467899998888888874 1 469999999999987
Q ss_pred ccCCChhhhhhcce
Q 026005 207 VGDVPWDMFVDSCK 220 (245)
Q Consensus 207 VGDvPW~mFv~svK 220 (245)
| .-+.+|-+.+|
T Consensus 68 i--~Sq~E~eEAlk 79 (101)
T 1wj6_A 68 I--NSQGEYEEALK 79 (101)
T ss_dssp C--CSHHHHHHHHH
T ss_pred E--ecHHHHHHHHH
Confidence 7 44666655443
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=73.84 E-value=15 Score=27.38 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred cceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEc-CCCCeE
Q 026005 127 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYED-KDGDWM 205 (245)
Q Consensus 127 ~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeD-keGDwM 205 (245)
..=|||+-. +.-.|....=-+|.+|...|.+=+... +.+-+|-|.| .+|.|+
T Consensus 5 ~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~------------------------~~~~~LsYk~~~s~~~v 57 (83)
T 1oey_A 5 AYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR------------------------LEHTKLSYRPRDSNELV 57 (83)
T ss_dssp CEEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC------------------------GGGCCEEECCTTCSSCE
T ss_pred cEEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC------------------------cceeEEEeeCCCCCCee
Confidence 355777776 777888888889999999999888741 1123788999 688899
Q ss_pred eccCCChhhhhhcce--eeEE
Q 026005 206 LVGDVPWDMFVDSCK--RLRI 224 (245)
Q Consensus 206 LVGDvPW~mFv~svK--RLrI 224 (245)
+.+|.=|+.-...++ ||.+
T Consensus 58 i~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 58 PLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp ECCTTTHHHHHTTCBTTEEEE
T ss_pred ccChHHHHHHHHhccCCcEEE
Confidence 999999998877744 4554
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=65.19 E-value=2.1 Score=31.21 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=18.8
Q ss_pred hhccCCCceeeEEEcCCCCeEec
Q 026005 185 IDLLNGSDYVPTYEDKDGDWMLV 207 (245)
Q Consensus 185 ~d~~~~sey~ltYeDkeGDwMLV 207 (245)
+++..+.+|.+++||++|+.+|+
T Consensus 37 LgIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 37 LDIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TTCCTTCCEEEEEEEETTEEEEE
T ss_pred hCCCCCCEEEEEEecCCCeEEEE
Confidence 34445679999999999999886
No 12
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=58.70 E-value=2.6 Score=28.63 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.2
Q ss_pred eeEEEcCCCCeEe
Q 026005 194 VPTYEDKDGDWML 206 (245)
Q Consensus 194 ~ltYeDkeGDwML 206 (245)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5889999999954
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=38.79 E-value=55 Score=25.43 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=38.9
Q ss_pred cceEEEEec-CccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeE
Q 026005 127 VAFVKVSMD-GAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM 205 (245)
Q Consensus 127 ~~~VKV~Md-G~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM 205 (245)
..-+.+... |..+--.||-..+=++.+|+.++.+..-.-|. -..-|||.+||..
T Consensus 14 ~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~-------------------------TAFeYEDE~gDRI 68 (106)
T 2npt_A 14 VLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATT-------------------------TAFEYEDEDGDRI 68 (106)
T ss_dssp CEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCC-------------------------SEEEEECTTSCEE
T ss_pred ceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcccee-------------------------eeeeeccccCCee
Confidence 344555554 55566777776777899999998876653221 2557999999998
Q ss_pred eccC
Q 026005 206 LVGD 209 (245)
Q Consensus 206 LVGD 209 (245)
-|--
T Consensus 69 TVRS 72 (106)
T 2npt_A 69 TVRS 72 (106)
T ss_dssp EECS
T ss_pred EEcc
Confidence 8753
No 14
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.61 E-value=9.8 Score=31.68 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.4
Q ss_pred cccCCCCCCC
Q 026005 9 LRLGLPGGNG 18 (245)
Q Consensus 9 LRLGLPG~~~ 18 (245)
=|||.||+++
T Consensus 101 GRLGvPGSGS 110 (156)
T 3brc_A 101 GRLGVPGSGS 110 (156)
T ss_dssp EECSSTTSCE
T ss_pred ccccCCCCcc
Confidence 3999999874
No 15
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=32.06 E-value=10 Score=29.45 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.1
Q ss_pred eeEEEcCCCCeEe
Q 026005 194 VPTYEDKDGDWML 206 (245)
Q Consensus 194 ~ltYeDkeGDwML 206 (245)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5789999999954
No 16
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=24.91 E-value=57 Score=26.87 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=34.3
Q ss_pred cceEEEEecCc--cccceeecCCccCHHHHHHHHHhhhc
Q 026005 127 VAFVKVSMDGA--PYLRKVDLKLYKSYQELSDALGKMFS 163 (245)
Q Consensus 127 ~~~VKV~MdG~--pigRKVDL~~~~sY~~L~~aLe~MF~ 163 (245)
..-+||..+|. +|=|.|.+..--+..+|..+|+..|+
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 46689999986 79999999999999999999999998
No 17
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=20.72 E-value=25 Score=27.46 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=26.7
Q ss_pred CCCceeeEEEcC-CCCeEeccCCChhhhhhcceeeE
Q 026005 189 NGSDYVPTYEDK-DGDWMLVGDVPWDMFVDSCKRLR 223 (245)
Q Consensus 189 ~~sey~ltYeDk-eGDwMLVGDvPW~mFv~svKRLr 223 (245)
++.+|.+.|.-- ..+|.+|.-+|...+...+++|+
T Consensus 203 ~g~~~~~~~~~~~~~~W~vv~~~p~~~~~~~~~~~~ 238 (240)
T 3c8c_A 203 NGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR 238 (240)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCCCCeEEEEEeCHHHHHHHHHHHh
Confidence 345677777654 45899999999999988887654
Done!