Query 026008
Match_columns 245
No_of_seqs 131 out of 426
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 03:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026008.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026008hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uowa_ b.7.1.2 (A:) Synaptoga 14.0 30 0.0022 24.9 1.4 19 35-53 124-144 (157)
2 d1dqva2 b.7.1.2 (A:425-569) Sy 11.9 33 0.0024 24.2 1.0 22 32-53 117-140 (145)
3 d1w15a_ b.7.1.2 (A:) Synaptota 10.8 44 0.0032 23.3 1.4 20 34-53 113-134 (138)
4 d3cx5h1 f.23.13.1 (H:2-94) Ubi 9.7 76 0.0055 21.9 2.2 18 186-203 51-68 (93)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 8.2 1.4E+02 0.01 22.6 3.7 24 213-236 246-269 (348)
6 d1ppjg_ f.23.13.1 (G:) Ubiquin 7.5 1.2E+02 0.009 19.9 2.5 27 177-203 32-58 (75)
7 d1t07a_ d.279.1.1 (A:) Hypothe 7.5 52 0.0038 22.2 0.5 8 60-67 18-25 (81)
8 d1ppjc1 f.32.1.1 (C:261-379) M 7.1 1.4E+02 0.01 21.0 2.9 23 216-238 27-49 (119)
9 d1xs8a_ d.279.1.1 (A:) Hypothe 5.6 76 0.0055 21.8 0.5 8 60-67 16-23 (91)
10 d1ujra_ d.289.1.1 (A:) RING fi 5.0 79 0.0057 21.8 0.3 23 50-73 31-54 (110)
No 1
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.98 E-value=30 Score=24.93 Aligned_cols=19 Identities=26% Similarity=0.753 Sum_probs=14.9
Q ss_pred HhhhHHHHhcc--CCcccccc
Q 026008 35 VHRHWLALTHS--LPLSNWYA 53 (245)
Q Consensus 35 ~~R~WmeiT~~--lp~~~WY~ 53 (245)
-.+||.++..+ .|+++||.
T Consensus 124 ~~~hW~~~~~~~~~~v~~Wh~ 144 (157)
T d1uowa_ 124 ELRHWSDMLANPRRPIAQWHT 144 (157)
T ss_dssp HHHHHHHHHHSTTCCEEEEEE
T ss_pred hHHHHHHHHhCCCCceeEeEe
Confidence 46899998765 38889984
No 2
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.94 E-value=33 Score=24.17 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=15.6
Q ss_pred chhHhhhHHHHhcc--CCcccccc
Q 026008 32 DFEVHRHWLALTHS--LPLSNWYA 53 (245)
Q Consensus 32 DfE~~R~WmeiT~~--lp~~~WY~ 53 (245)
|-+..+||.++..+ .|+.+||.
T Consensus 117 ~~~~~~~W~~l~~~p~~~i~~Wh~ 140 (145)
T d1dqva2 117 DPHGREHWAEMLANPRKPVEHWHQ 140 (145)
T ss_dssp CHHHHHHHHTSSSSSSSCSCSCCC
T ss_pred CchhhHHHHHHHhCCCCeeeEeEE
Confidence 34456899987544 38899984
No 3
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.79 E-value=44 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=14.5
Q ss_pred hHhhhHHHHhcc--CCcccccc
Q 026008 34 EVHRHWLALTHS--LPLSNWYA 53 (245)
Q Consensus 34 E~~R~WmeiT~~--lp~~~WY~ 53 (245)
|..+||-++..+ .|+.+||.
T Consensus 113 ~~~~hW~~ll~~~~k~i~~Wh~ 134 (138)
T d1w15a_ 113 SGGGHWKEICDFPRRQIAKWHM 134 (138)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEE
T ss_pred chHHHHHHHHhCCCCeeeECeE
Confidence 345899887543 49999984
No 4
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.68 E-value=76 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 026008 186 FKHLFAVAAPVYFVYLLR 203 (245)
Q Consensus 186 ~K~m~Ly~AP~~f~yLL~ 203 (245)
+|+..+|.+|++.+..+-
T Consensus 51 ~r~q~lyv~PPfi~~Y~i 68 (93)
T d3cx5h1 51 FKSQFLYVLIPAGIYWYW 68 (93)
T ss_dssp HHTTHHHHHHHHHHHHHH
T ss_pred hhhhceEEcchHHHHHHH
Confidence 688899999998876543
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.16 E-value=1.4e+02 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 026008 213 GFSRLSVLGAVVVAVFAAAYGPFL 236 (245)
Q Consensus 213 ~~~~l~~lg~~vi~tf~l~f~PFl 236 (245)
+-+|..+..++++++|.++|.|+.
T Consensus 246 ~~~~~~~~~~~i~~~f~~~~~P~~ 269 (348)
T d1u19a_ 246 AEKEVTRMVIIMVIAFLICWLPYA 269 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHhheEEEeehHHHHHhhHHH
Confidence 357899999999999999999975
No 6
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.50 E-value=1.2e+02 Score=19.85 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 026008 177 GFLFAVLLCFKHLFAVAAPVYFVYLLR 203 (245)
Q Consensus 177 av~F~~al~~K~m~Ly~AP~~f~yLL~ 203 (245)
..++=+.=-+|...+|.+|++.+..+-
T Consensus 32 ~gi~N~~RR~~~~~l~v~PPfi~~Y~i 58 (75)
T d1ppjg_ 32 KGIPNVLRRTRACILRVAPPFVAFYLV 58 (75)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHhHHhceEEcCHHHHHHHH
Confidence 345555566889999999999876644
No 7
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.49 E-value=52 Score=22.23 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=6.4
Q ss_pred cCCCCchH
Q 026008 60 TLDYPPFF 67 (245)
Q Consensus 60 ~lDYPPl~ 67 (245)
+||+||+-
T Consensus 18 gLd~pP~P 25 (81)
T d1t07a_ 18 GLDRPPYP 25 (81)
T ss_dssp BCSSCSSS
T ss_pred CCCCCCCC
Confidence 68999874
No 8
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.09 E-value=1.4e+02 Score=20.98 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 026008 216 RLSVLGAVVVAVFAAAYGPFLYH 238 (245)
Q Consensus 216 ~l~~lg~~vi~tf~l~f~PFl~~ 238 (245)
|+..+-+.+.+...+.++|++..
T Consensus 27 K~gGvl~m~~si~il~~lP~l~~ 49 (119)
T d1ppjc1 27 KLGGVLALAFSILILALIPLLHT 49 (119)
T ss_dssp HHHHHHHHHHHHHGGGTHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555566667787753
No 9
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=5.61 E-value=76 Score=21.80 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=6.4
Q ss_pred cCCCCchH
Q 026008 60 TLDYPPFF 67 (245)
Q Consensus 60 ~lDYPPl~ 67 (245)
|||+||+=
T Consensus 16 gL~~pP~P 23 (91)
T d1xs8a_ 16 GQDFQLYP 23 (91)
T ss_dssp BCCCCSSC
T ss_pred CCCCCCCC
Confidence 68999874
No 10
>d1ujra_ d.289.1.1 (A:) RING finger protein 146 (Dactylidin) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.99 E-value=79 Score=21.84 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=15.9
Q ss_pred cccccccccccCCCCchHH-HHHHH
Q 026008 50 NWYADETSPWTLDYPPFFA-CFERF 73 (245)
Q Consensus 50 ~WY~~~~s~W~lDYPPl~a-y~~~l 73 (245)
+||+++.+-|. .|.|-.. ..|-.
T Consensus 31 ~W~~~~~~gW~-~Y~~~~~~~IE~a 54 (110)
T d1ujra_ 31 AWYYEGRNGWW-QYDERTSRELEDA 54 (110)
T ss_dssp EEEEECSSSEE-ECCSHHHHHHHHH
T ss_pred EEEEeCCCCEE-ECCHHHHHHHHHH
Confidence 69988877788 7987653 34433
Done!