Query 026009
Match_columns 245
No_of_seqs 114 out of 333
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgl_A Casein kinase II subuni 100.0 2.9E-95 1E-99 639.3 12.2 193 53-245 3-195 (215)
2 1qf8_A Casein kinase II; casei 100.0 6.7E-88 2.3E-92 580.7 10.3 179 53-231 3-181 (182)
3 4esj_A Type-2 restriction enzy 78.0 0.47 1.6E-05 42.5 0.1 60 156-222 34-105 (257)
4 2kxe_A DNA polymerase II small 64.8 3.1 0.00011 30.5 1.9 29 129-157 8-36 (75)
5 2con_A RUH-035 protein, NIN on 36.3 10 0.00034 28.2 0.7 13 180-192 26-38 (79)
6 2jmo_A Parkin; IBR, E3 ligase, 32.4 33 0.0011 24.6 3.0 36 158-196 27-70 (80)
7 3vk8_A Probable formamidopyrim 32.1 28 0.00097 31.1 3.1 37 154-194 251-289 (295)
8 1f62_A Transcription factor WS 24.5 22 0.00075 23.1 0.7 8 184-191 41-48 (51)
9 2kep_A General secretion pathw 24.3 33 0.0011 26.5 1.8 28 121-149 18-45 (110)
10 3v2d_6 50S ribosomal protein L 24.0 34 0.0012 23.5 1.6 18 176-193 29-46 (54)
11 3m7n_A Putative uncharacterize 23.6 41 0.0014 27.6 2.4 32 152-195 136-167 (179)
12 3r8s_1 50S ribosomal protein L 23.2 32 0.0011 23.3 1.3 18 176-193 26-43 (50)
13 2lbm_A Transcriptional regulat 23.0 11 0.00036 30.8 -1.3 33 158-191 80-115 (142)
14 2nn6_I 3'-5' exoribonuclease C 22.2 43 0.0015 28.3 2.3 41 136-194 155-195 (209)
15 1mm2_A MI2-beta; PHD, zinc fin 22.2 57 0.002 22.2 2.5 29 158-191 26-54 (61)
16 3u5n_A E3 ubiquitin-protein li 21.6 45 0.0015 27.8 2.3 34 158-196 24-57 (207)
17 1k3x_A Endonuclease VIII; hydr 21.3 40 0.0014 29.4 2.0 10 182-191 252-261 (262)
18 3o36_A Transcription intermedi 20.9 51 0.0017 26.8 2.4 34 158-196 21-54 (184)
19 3w0f_A Endonuclease 8-like 3; 20.5 63 0.0021 29.0 3.1 14 181-194 270-283 (287)
20 3flo_B DNA polymerase alpha ca 20.2 39 0.0013 29.0 1.6 34 158-194 24-59 (206)
21 2ro1_A Transcription intermedi 20.2 57 0.0019 27.0 2.6 31 158-193 19-49 (189)
22 2k4x_A 30S ribosomal protein S 20.2 57 0.0019 22.2 2.1 27 158-194 20-46 (55)
23 2jny_A Uncharacterized BCR; st 20.1 48 0.0016 23.6 1.8 13 183-195 27-39 (67)
No 1
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=2.9e-95 Score=639.25 Aligned_cols=193 Identities=58% Similarity=1.117 Sum_probs=175.0
Q ss_pred CCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 026009 53 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 132 (245)
Q Consensus 53 ~~~~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~V~~y~~aL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGL 132 (245)
++++.+||+|||+++||+||||||+|||+|+|||+||+++||+|++||+||||.+++++.+.++++.+.++++|++||||
T Consensus 3 ~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYGL 82 (215)
T 4dgl_A 3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL 82 (215)
T ss_dssp -----CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhhh
Confidence 44567999999999999999999999999999999999999999999999999987655444455677899999999999
Q ss_pred ccceeeeChHHHHHHHHhhhcCccccCCCccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 026009 133 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT 212 (245)
Q Consensus 133 IHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGts 212 (245)
||||||+|++||++|++||++|+||+||||+|++|+|||+|+||+||+++||||||+|+|||+|+++++++|||||||||
T Consensus 83 IHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGts 162 (215)
T 4dgl_A 83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG 162 (215)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTTT
T ss_pred hhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred hhhHHHHHhCCCCCCCCCCCcceeeeeeeecCC
Q 026009 213 FPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 245 (245)
Q Consensus 213 Fphlfl~~yP~l~p~~~~~~Y~PrIfGFkI~~~ 245 (245)
|||||+|+||+++|+++.++|+|||||||||++
T Consensus 163 Fph~f~~~~p~l~p~~~~~~yvPrifGFkih~~ 195 (215)
T 4dgl_A 163 FPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPM 195 (215)
T ss_dssp HHHHHHHHCGGGCCCSCSCCCCCEETTEEECTH
T ss_pred chHHHHHHcccccCCCCCCcccCeEeEEEecHH
Confidence 999999999999999999999999999999963
No 2
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=6.7e-88 Score=580.69 Aligned_cols=179 Identities=58% Similarity=1.111 Sum_probs=161.9
Q ss_pred CCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 026009 53 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 132 (245)
Q Consensus 53 ~~~~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~V~~y~~aL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGL 132 (245)
++++.+||+|||+++||+||||||+|||+|+|||+||+++||+|++||+||||.++++++..++++.+.++++|++||||
T Consensus 3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL 82 (182)
T 1qf8_A 3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL 82 (182)
T ss_dssp ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence 44567899999999999999999999999999999999999999999999999987665444455678899999999999
Q ss_pred ccceeeeChHHHHHHHHhhhcCccccCCCccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 026009 133 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT 212 (245)
Q Consensus 133 IHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P~s~~~~~iDGAyFGts 212 (245)
||||||+|++||++|++||++|+||+||||+|++|+|||+|+||+||+++||+|||+|+|||+|++.++++|||||||||
T Consensus 83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGts 162 (182)
T 1qf8_A 83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG 162 (182)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSS
T ss_pred hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988878999999999
Q ss_pred hhhHHHHHhCCCCCCCCCC
Q 026009 213 FPHLFLMTYGHLKPQKATQ 231 (245)
Q Consensus 213 Fphlfl~~yP~l~p~~~~~ 231 (245)
|||||+|+||++.|+++.+
T Consensus 163 Fph~f~~~~p~l~p~~~~~ 181 (182)
T 1qf8_A 163 FPHMLFMVHPEYRPKRPAN 181 (182)
T ss_dssp HHHHHHHHCGGGSCSCC--
T ss_pred hHHHHHHHcccccCCCCCC
Confidence 9999999999999987654
No 3
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=77.97 E-value=0.47 Score=42.50 Aligned_cols=60 Identities=30% Similarity=0.619 Sum_probs=36.4
Q ss_pred cccCCCccCCCCCccccccCCCCCCccce-eecCCCCccccCCCCC--CC--cccccccC-------CchhhHHHHHhC
Q 026009 156 FGRCPRVYCCGQPCLPVGQSDIPRSSTVK-IYCPKCEDIYYPRSKY--QG--NIDGAYFG-------TTFPHLFLMTYG 222 (245)
Q Consensus 156 FG~CPRv~C~~q~lLPiGlSd~pg~s~VK-lyCP~C~DvY~P~s~~--~~--~iDGAyFG-------tsFphlfl~~yP 222 (245)
-+.||+ |..-++- .-+...+|. .|||.|.+-|.-+|.. .+ -.||||-- .+=|.+|||+|.
T Consensus 34 n~yCPn--CG~~~l~-----~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~NPnFffL~Y~ 105 (257)
T 4esj_A 34 QSYCPN--CGNNPLN-----HFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADNNPNFFFLTYT 105 (257)
T ss_dssp HCCCTT--TCCSSCE-----EC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTCCCEEEEEEEC
T ss_pred CCcCCC--CCChhhh-----hccCCCcccccccCCcchhheeccccCccCccccCchHHHHHHHHhccCCCCEEEEEec
Confidence 356885 4443332 233445665 8999999999987533 22 34999963 255777777775
No 4
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=64.85 E-value=3.1 Score=30.51 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=26.4
Q ss_pred HhccccceeeeChHHHHHHHHhhhcCccc
Q 026009 129 LYGLIHVRYILTSKGMAAMLEKYKNYDFG 157 (245)
Q Consensus 129 LYGLIHARYIlT~~Gl~~M~eKY~~g~FG 157 (245)
.=+|+-++|++||..--.+.+-|++|+|-
T Consensus 8 Vk~L~~n~YLiTPsAYyLL~~~ykkg~Fs 36 (75)
T 2kxe_A 8 VKGLMKNGYLITPSAYYLLVGHFNEGKFS 36 (75)
T ss_dssp HHHHHTTTCEECHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCceeCchHHHHHHHHhhccccc
Confidence 45789999999999999999999999985
No 5
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=36.30 E-value=10 Score=28.21 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.6
Q ss_pred CccceeecCCCCc
Q 026009 180 SSTVKIYCPKCED 192 (245)
Q Consensus 180 ~s~VKlyCP~C~D 192 (245)
..+-|.|||+|.-
T Consensus 26 ~~~~k~FCp~CGn 38 (79)
T 2con_A 26 SDMNRVFCGHCGN 38 (79)
T ss_dssp SCSSCCSCSSSCC
T ss_pred CCcccccccccCc
Confidence 4466999999986
No 6
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.40 E-value=33 Score=24.63 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=20.8
Q ss_pred cCCCccCCCCCccccccCCCCCC--------ccceeecCCCCccccC
Q 026009 158 RCPRVYCCGQPCLPVGQSDIPRS--------STVKIYCPKCEDIYYP 196 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGlSd~pg~--------s~VKlyCP~C~DvY~P 196 (245)
-||+..|+..-... + +.... +-=..||.+|+.-||.
T Consensus 27 ~CP~p~C~~~v~~~-~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 27 LCPRPGCGAGLLPE-P--DQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCCSSSCCCCCCCC-S--CTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred ECCCCCCCcccEEC-C--CCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 49999998753332 1 11111 1114578888888876
No 7
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=32.05 E-value=28 Score=31.10 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=20.1
Q ss_pred Ccccc--CCCccCCCCCccccccCCCCCCccceeecCCCCccc
Q 026009 154 YDFGR--CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 194 (245)
Q Consensus 154 g~FG~--CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY 194 (245)
.+||+ || | |.++.=+-+-+..+.++---|||+|+..=
T Consensus 251 ~VYgR~g~P---C-G~~I~~~~~~~~~~~~R~t~~CP~CQ~~~ 289 (295)
T 3vk8_A 251 LVYRKKKDP---N-GNKVIADKIIGSGKNKRTTYWAPAIQKLE 289 (295)
T ss_dssp SSTTCSBCT---T-SCBCEEEECSCCTTCCCEEEECTTTCBCC
T ss_pred EEeCCCCCC---C-CCcEEEEEecCCCCCCCccEECCCCCCCc
Confidence 45665 55 4 55443221211122456678999998654
No 8
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.50 E-value=22 Score=23.08 Aligned_cols=8 Identities=38% Similarity=1.232 Sum_probs=4.5
Q ss_pred eeecCCCC
Q 026009 184 KIYCPKCE 191 (245)
Q Consensus 184 KlyCP~C~ 191 (245)
..|||.|.
T Consensus 41 ~W~C~~C~ 48 (51)
T 1f62_A 41 EWQCPACQ 48 (51)
T ss_dssp CCSCTTTS
T ss_pred cEECcCcc
Confidence 45566663
No 9
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=24.30 E-value=33 Score=26.47 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=23.8
Q ss_pred HHHHHHHHHhccccceeeeChHHHHHHHH
Q 026009 121 LVESAAEMLYGLIHVRYILTSKGMAAMLE 149 (245)
Q Consensus 121 ~ie~~A~~LYGLIHARYIlT~~Gl~~M~e 149 (245)
.++ .|-.+|-|=|-||=.|.+||+++.+
T Consensus 18 ~l~-~Al~~Y~lD~G~YPtt~qgL~aLv~ 45 (110)
T 2kep_A 18 AIA-AALDMYKLDNFAYPSTQQGLEALVK 45 (110)
T ss_dssp HHH-HHHHHHHHHTSSCCCTTHHHHHHHS
T ss_pred HHH-HHHHHHHHHhCCCCCcHHHHHHHHh
Confidence 344 4566999999999999999999987
No 10
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=23.99 E-value=34 Score=23.52 Aligned_cols=18 Identities=28% Similarity=0.804 Sum_probs=14.1
Q ss_pred CCCCCccceeecCCCCcc
Q 026009 176 DIPRSSTVKIYCPKCEDI 193 (245)
Q Consensus 176 d~pg~s~VKlyCP~C~Dv 193 (245)
..|..-.+|-|||.|+..
T Consensus 29 n~p~rLelkKycp~c~kH 46 (54)
T 3v2d_6 29 NTPNKLELRKYCPWCRKH 46 (54)
T ss_dssp TSCSCCEEEEEETTTTEE
T ss_pred CCCcccEEeeeCCCCCCE
Confidence 456677889999999753
No 11
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=23.62 E-value=41 Score=27.60 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=23.1
Q ss_pred hcCccccCCCccCCCCCccccccCCCCCCccceeecCCCCcccc
Q 026009 152 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYY 195 (245)
Q Consensus 152 ~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~ 195 (245)
.-..+..|++ | |.++.|++ . .+.||.|.-+-.
T Consensus 136 lGvv~a~~~~--~-g~~m~~~~-~--------~~~cp~~g~~e~ 167 (179)
T 3m7n_A 136 MGVLRALCSN--C-KTEMVREG-D--------ILKCPECGRVEK 167 (179)
T ss_dssp CEEEECBCTT--T-CCBCEECS-S--------SEECSSSCCEEC
T ss_pred CCEEEecccc--c-CCceEECC-C--------EEECCCCCCEEE
Confidence 4455667884 4 56789977 2 799999987764
No 12
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=23.22 E-value=32 Score=23.27 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=13.7
Q ss_pred CCCCCccceeecCCCCcc
Q 026009 176 DIPRSSTVKIYCPKCEDI 193 (245)
Q Consensus 176 d~pg~s~VKlyCP~C~Dv 193 (245)
..|..-.+|-|||.|+..
T Consensus 26 ~~~~rLelkKycp~~~kh 43 (50)
T 3r8s_1 26 TKPEKLELKKFDPVVRQH 43 (50)
T ss_dssp GCCSCCCEEEEETTTTEE
T ss_pred CCCccceEeeeCcCCCCE
Confidence 346666789999999753
No 13
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.04 E-value=11 Score=30.83 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=23.6
Q ss_pred cCCCccCCCCCcccccc---CCCCCCccceeecCCCC
Q 026009 158 RCPRVYCCGQPCLPVGQ---SDIPRSSTVKIYCPKCE 191 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGl---Sd~pg~s~VKlyCP~C~ 191 (245)
.|||++|..+...|+|. +++. ...-+..||.|.
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~-~p~~~W~C~~C~ 115 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIM-DENNQWYCYICH 115 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHH-TSTTCCCCTTTC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcc-cCCCCCEeeccc
Confidence 79999999998889983 2210 012278899995
No 14
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=22.18 E-value=43 Score=28.32 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=28.3
Q ss_pred eeeeChHHHHHHHHhhhcCccccCCCccCCCCCccccccCCCCCCccceeecCCCCccc
Q 026009 136 RYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 194 (245)
Q Consensus 136 RYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY 194 (245)
||.||-+ +.-.-..+..|++ |.++.|++-. .|.||.|.-+-
T Consensus 155 ~i~LS~k------~~~lGVv~A~c~~----g~~m~~~~~~--------~m~cp~cg~~E 195 (209)
T 2nn6_I 155 NYLLTTA------ENELGVVVAHSES----GIQMVPISWC--------EMQCPKTHTKE 195 (209)
T ss_dssp EEEEECC------SSSCEECCCBCSS----SCBCEEEETT--------EEECTTTTCCB
T ss_pred eEEEEEe------cCCCcEEEEEcCC----CCEEEEccCC--------EEECCCCCCEE
Confidence 5666533 2334455567887 6789998854 68999998776
No 15
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.18 E-value=57 Score=22.16 Aligned_cols=29 Identities=31% Similarity=0.726 Sum_probs=16.6
Q ss_pred cCCCccCCCCCccccccCCCCCCccceeecCCCC
Q 026009 158 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCE 191 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~ 191 (245)
.|||.+.-...-.| ++..|. -+.|||.|.
T Consensus 26 ~C~~~fH~~Cl~pp--l~~~p~---g~W~C~~C~ 54 (61)
T 1mm2_A 26 TCPSSYHIHCLNPP--LPEIPN---GEWLCPRCT 54 (61)
T ss_dssp SSCCCBCSSSSSSC--CSSCCS---SCCCCTTTT
T ss_pred CCCHHHcccccCCC--cCcCCC---CccCChhhc
Confidence 37777655543322 344443 268898884
No 16
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=21.60 E-value=45 Score=27.77 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=22.4
Q ss_pred cCCCccCCCCCccccccCCCCCCccceeecCCCCccccC
Q 026009 158 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYP 196 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P 196 (245)
.|||.+.-.+ |.-+++..|.. ..+||.|...=.+
T Consensus 24 ~C~~~~H~~C--l~p~l~~~p~~---~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 24 KCPKVFHLTC--HVPTLLSFPSG---DWICTFCRDIGKP 57 (207)
T ss_dssp SSSCEECTTT--SSSCCSSCCSS---CCCCTTTSCSSSC
T ss_pred CCCCccCCcc--CCCCCCCCCCC---CEEeCceeCcccc
Confidence 4888887654 43345555532 5999999876554
No 17
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.29 E-value=40 Score=29.40 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=7.7
Q ss_pred cceeecCCCC
Q 026009 182 TVKIYCPKCE 191 (245)
Q Consensus 182 ~VKlyCP~C~ 191 (245)
+---|||+|+
T Consensus 252 R~t~~CP~CQ 261 (262)
T 1k3x_A 252 RPFYWCPGCQ 261 (262)
T ss_dssp EEEEECTTTC
T ss_pred CCeEECCCCC
Confidence 4456999997
No 18
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.89 E-value=51 Score=26.78 Aligned_cols=34 Identities=24% Similarity=0.613 Sum_probs=22.3
Q ss_pred cCCCccCCCCCccccccCCCCCCccceeecCCCCccccC
Q 026009 158 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYP 196 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY~P 196 (245)
.|||.+.-.+ |--+++..|.. ..+||.|...=.|
T Consensus 21 ~C~~~~H~~C--~~p~l~~~p~~---~W~C~~C~~~~~~ 54 (184)
T 3o36_A 21 KCPKVFHLSC--HVPTLTNFPSG---EWICTFCRDLSKP 54 (184)
T ss_dssp SSSCEECTTT--SSSCCSSCCSS---CCCCTTTSCSSSC
T ss_pred CCCcccCccc--cCCCCCCCCCC---CEECccccCcccc
Confidence 4888887765 32244445532 5999999876544
No 19
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=20.46 E-value=63 Score=29.04 Aligned_cols=14 Identities=29% Similarity=0.883 Sum_probs=10.5
Q ss_pred ccceeecCCCCccc
Q 026009 181 STVKIYCPKCEDIY 194 (245)
Q Consensus 181 s~VKlyCP~C~DvY 194 (245)
.+.--|||+|+..-
T Consensus 270 gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 270 SRMTYFCPHCQKHH 283 (287)
T ss_dssp CCCEEECTTTSCC-
T ss_pred CCCEEECCCccccc
Confidence 46778999998653
No 20
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=20.23 E-value=39 Score=28.96 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=23.4
Q ss_pred cCCCccCCCCCccccccCCCCC--CccceeecCCCCccc
Q 026009 158 RCPRVYCCGQPCLPVGQSDIPR--SSTVKIYCPKCEDIY 194 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGlSd~pg--~s~VKlyCP~C~DvY 194 (245)
+|| .|.....+| |+....+ ....-+-||+|+..+
T Consensus 24 ~Cp--~C~~~~~F~-gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 24 SCP--SCDKRFPFG-GIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp ECT--TTCCEEEEC-SSSCCSSEEEETTEEEETTTCCBC
T ss_pred ECC--CCCCccCCC-CcccCCCcccccccccCCCCCCcC
Confidence 577 688777777 6654433 345578899998754
No 21
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.18 E-value=57 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=19.5
Q ss_pred cCCCccCCCCCccccccCCCCCCccceeecCCCCcc
Q 026009 158 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDI 193 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~Dv 193 (245)
.|||++.-.+ |--++...|.. ..+||.|...
T Consensus 19 ~C~~~~H~~C--l~p~l~~~p~g---~W~C~~C~~~ 49 (189)
T 2ro1_A 19 QCEFCFHLDC--HLPALQDVPGE---EWSCSLCHVL 49 (189)
T ss_dssp TTCCBCCSTT--STTCCSSCCCT---TCCTTTTSCS
T ss_pred CCCchhcccc--CCCCcccCCCC---CCCCcCccCC
Confidence 4888886654 32244455532 4889999654
No 22
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.16 E-value=57 Score=22.22 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=15.9
Q ss_pred cCCCccCCCCCccccccCCCCCCccceeecCCCCccc
Q 026009 158 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 194 (245)
Q Consensus 158 ~CPRv~C~~q~lLPiGlSd~pg~s~VKlyCP~C~DvY 194 (245)
.||+ |...-++. ...-.++|++|.=.+
T Consensus 20 fCPk--CG~~~~ma--------~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 20 FCPR--CGPGVFLA--------EHADRYSCGRCGYTE 46 (55)
T ss_dssp CCTT--TTTTCCCE--------ECSSEEECTTTCCCE
T ss_pred cCcC--CCCceeEe--------ccCCEEECCCCCCEE
Confidence 5885 76543333 112388999996554
No 23
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.10 E-value=48 Score=23.58 Aligned_cols=13 Identities=8% Similarity=-0.021 Sum_probs=11.0
Q ss_pred ceeecCCCCcccc
Q 026009 183 VKIYCPKCEDIYY 195 (245)
Q Consensus 183 VKlyCP~C~DvY~ 195 (245)
=.|.|+.|+-.|-
T Consensus 27 g~LvC~~c~~~YP 39 (67)
T 2jny_A 27 QLLVNERLNLAYR 39 (67)
T ss_dssp TEEEETTTTEEEE
T ss_pred CEEEcCCCCcccc
Confidence 3689999999993
Done!