BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026010
         (245 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2
          Length = 454

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 119/142 (83%), Gaps = 3/142 (2%)

Query: 67  STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 126
           S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKGTIY
Sbjct: 271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT---TGDMYLDLKGTIY 327

Query: 127 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 186
           K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct: 328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query: 187 DKLAKAMPHQIDQNDGIEEQTN 208
           +K AK      DQ+ G EE+TN
Sbjct: 388 NKNAKTAVKPADQSVGTEEETN 409


>sp|Q8NBI3|DRAXI_HUMAN Draxin OS=Homo sapiens GN=DRAXIN PE=1 SV=2
          Length = 349

 Score = 32.7 bits (73), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 103 GRILVPGT------AEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFI 156
           GR LV G       AE +    LD       T+L P+  F + +F  + A  E+++    
Sbjct: 151 GRALVRGPSSLMKKAELSEAQVLDAAMEESSTSLAPT-MFFLTTFEAAPATEESLILPVT 209

Query: 157 QLKPQSNVYEAETMVEGTLDGFLFDSEDESD 187
            L+PQ     ++  V  TLD  LFD  D  D
Sbjct: 210 SLRPQQAQPRSDGEVMPTLDMALFDWTDYED 240


>sp|A8XYW9|BOP1_CAEBR Ribosome biogenesis protein BOP1 homolog OS=Caenorhabditis briggsae
           GN=CBG20902 PE=3 SV=1
          Length = 671

 Score = 32.3 bits (72), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 11/142 (7%)

Query: 64  LNVSTSTLPLVMSEKLQRTKAL-VE-CEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDL 121
           L    +TL   M     + +A+ VE   GE +   G+ G V RI +  T        +D 
Sbjct: 326 LRPFPTTLAFYMRGHTGQVRAISVEPVHGELLASGGEDGTV-RIWMMATGRCIKTFQMDG 384

Query: 122 KGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMN----DFIQLKPQSNVYEAETMVEGTLDG 177
           + T    + V  RT   V++   E K  AI+N    D + ++ Q+    AET  E   DG
Sbjct: 385 EVTSVAFSPVADRTLLAVAY---EGKYVAILNTGCGDRLHVQ-QTETLLAETPTESQEDG 440

Query: 178 FLFDSEDESDKLAKAMPHQIDQ 199
            +       DKL   MP+++ Q
Sbjct: 441 AIVTWRKSKDKLVLKMPNEVRQ 462


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.126    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,413,698
Number of Sequences: 539616
Number of extensions: 3618856
Number of successful extensions: 14098
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 13625
Number of HSP's gapped (non-prelim): 457
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)