Query 026010
Match_columns 245
No_of_seqs 31 out of 33
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 03:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc7_A Hypothetical protein TM 33.4 14 0.00049 30.6 1.2 44 93-149 15-63 (138)
2 2lnv_A General secretion pathw 26.8 35 0.0012 26.5 2.4 48 114-163 21-81 (104)
3 3oss_C Type 2 secretion system 22.6 52 0.0018 23.8 2.4 44 115-163 5-61 (68)
4 2ka5_A Putative anti-sigma fac 13.5 46 0.0016 24.5 0.4 46 80-127 19-65 (125)
5 2lc4_A PILP protein; type IV p 11.3 2.4E+02 0.0082 22.1 3.9 34 128-161 45-82 (111)
6 2f1f_A Acetolactate synthase i 10.0 65 0.0022 26.3 0.2 30 124-153 107-137 (164)
7 2y4x_A PILP protein; biosynthe 9.8 2.9E+02 0.0098 20.8 3.7 34 128-161 38-75 (93)
8 2pc6_A Probable acetolactate s 9.3 66 0.0022 26.4 -0.0 30 124-153 108-138 (165)
9 2fgc_A Acetolactate synthase, 8.8 76 0.0026 27.0 0.2 30 124-153 134-164 (193)
10 1p5q_A FKBP52, FK506-binding p 8.3 4.1E+02 0.014 22.0 4.4 43 91-134 17-63 (336)
No 1
>1nc7_A Hypothetical protein TM1070; structural genomics, molecular propeller, PSI, protein structure initiative; 1.55A {Thermotoga maritima} SCOP: b.123.1.1
Probab=33.42 E-value=14 Score=30.65 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=25.5
Q ss_pred ccccCCccccc--eEEecCC--CCCCcceEEeecceeeeeEEecCc-cEEEEeecCCchhhh
Q 026010 93 VDLSGDMGAVG--RILVPGT--AEGNHEMFLDLKGTIYKTTLVPSR-TFCIVSFGHSEAKIE 149 (245)
Q Consensus 93 lDLsGD~GAVG--Rl~V~~~--~~~~~~L~LDLKG~iY~atIVPs~-T~~VVsvg~tEAKVE 149 (245)
-+|-|.|-.+| ||+|.++ |....+- +.|- ++||+|.|...|+|+
T Consensus 15 ~~l~~~~~~iG~r~W~IpdGyIP~~s~G~-------------~~SHEslCILN~gd~dA~i~ 63 (138)
T 1nc7_A 15 ENLYFQGHMNGARKWFFPDGYIPNGKRGY-------------LVSHESLCIMNTGDETAKIR 63 (138)
T ss_dssp -------CCCSEEEEEEEEECCCCCEETT-------------EECEEEEEEEECSSSCEEEE
T ss_pred hhhcccccccccEEEEecCcccCCCCCCC-------------cccceeEEEeecCCCCcEEE
Confidence 45777788888 5777643 2221111 4555 899999999999986
No 2
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=26.79 E-value=35 Score=26.53 Aligned_cols=48 Identities=29% Similarity=0.293 Sum_probs=36.5
Q ss_pred CcceEEeecceeeeeEEecCccEEEEeec-------------CCchhhhheeccceeeecCcc
Q 026010 114 NHEMFLDLKGTIYKTTLVPSRTFCIVSFG-------------HSEAKIEAIMNDFIQLKPQSN 163 (245)
Q Consensus 114 ~~~L~LDLKG~iY~atIVPs~T~~VVsvg-------------~tEAKVEai~ndFiqLr~~~~ 163 (245)
...|.|-|.|++|.. -|...++|+..+ .+.|+|..|+.|.|-|+.++.
T Consensus 21 ~T~L~L~L~GVv~s~--~~~~S~AII~~~g~Q~~Y~vGd~I~g~~a~L~~I~~DrVII~~~Gr 81 (104)
T 2lnv_A 21 PSTLNLSLTGVMAGD--DDSRSIAIISKDNEQFSRGVNEEVPGYNAKIVSIRPDRVVLQYQGR 81 (104)
T ss_dssp CSCCCSEEEEEECCS--SSSSCEEEEESSSCCEEECTTEECSSSCCEEEEEETTEEEEEETTE
T ss_pred CCCcceEEEEEEecC--CccccEEEEEcCCeEeEEeCCCCcCCCCEEEEEEeCCEEEEecCCE
Confidence 356889999998853 455566666544 236899999999999999886
No 3
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=22.63 E-value=52 Score=23.80 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=33.5
Q ss_pred cceEEeecceeeeeEEecCccEEEEeec-------------CCchhhhheeccceeeecCcc
Q 026010 115 HEMFLDLKGTIYKTTLVPSRTFCIVSFG-------------HSEAKIEAIMNDFIQLKPQSN 163 (245)
Q Consensus 115 ~~L~LDLKG~iY~atIVPs~T~~VVsvg-------------~tEAKVEai~ndFiqLr~~~~ 163 (245)
..|.|-|.|++... ..++|+.-+ .+.|+|..|+.|-|-|+.++.
T Consensus 5 T~L~l~L~Gvv~s~-----~s~AII~~~g~q~~Y~vGd~i~g~~a~l~~V~~DrVIl~~~G~ 61 (68)
T 3oss_C 5 TRLNVVLRGIAFGA-----RPGAVIEEGGKQQVYLQGERLDSHNAVIEEINRDHVMLRYQGK 61 (68)
T ss_dssp CCSSCEEEEEEESS-----SCEEEEEETTEEEEECTTCBCSSSSEEEEEECSSEEEEEETTE
T ss_pred ccceeEEEEEEeCC-----CcEEEEecCCcEeEEECCCEeCCCCEEEEEEeCCEEEEecCCE
Confidence 45778899997632 666666644 246899999999999999886
No 4
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=13.49 E-value=46 Score=24.46 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=25.2
Q ss_pred ccceeeeeecCccccccCCccccceEEec-CCCCCCcceEEeecceeee
Q 026010 80 QRTKALVECEGESVDLSGDMGAVGRILVP-GTAEGNHEMFLDLKGTIYK 127 (245)
Q Consensus 80 ~rtk~LvE~eG~slDLsGD~GAVGRl~V~-~~~~~~~~L~LDLKG~iY~ 127 (245)
...-+++.+.|+ ||+.. ...+-+.+.. --..+.+.|+|||.++-|-
T Consensus 19 ~~~~~vv~l~G~-Ld~~~-a~~l~~~l~~~~~~~~~~~vvlDls~V~~i 65 (125)
T 2ka5_A 19 VDDVVILMPNKE-LNIEN-AHLFKKWVFDEFLNKGYNKIFLVLSDVESI 65 (125)
T ss_dssp CSSCEEECCCSC-CSGGG-THHHHHHHHHHTTTTTCCEEEEECTTCSCC
T ss_pred eCCEEEEEEecE-Eeccc-HHHHHHHHHHHHhhCCCCEEEEECCCCCEE
Confidence 344566777664 55543 2233332222 1122346799999999874
No 5
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=11.34 E-value=2.4e+02 Score=22.07 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.7
Q ss_pred eEEecCccEEEEe----ecCCchhhhheeccceeeecC
Q 026010 128 TTLVPSRTFCIVS----FGHSEAKIEAIMNDFIQLKPQ 161 (245)
Q Consensus 128 atIVPs~T~~VVs----vg~tEAKVEai~ndFiqLr~~ 161 (245)
|=|.|.+.+..|. +|++.-||.+|..+.|.|++.
T Consensus 45 ALV~~dG~vyrVk~G~ylG~n~GrI~~It~~~I~l~E~ 82 (111)
T 2lc4_A 45 ALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEI 82 (111)
T ss_dssp EEEEETTEEEEEETTCEETTTTEEEEEECSSEEEEEEE
T ss_pred EEEEeCCcEEEEccCCEeccCCCEEEEEeCCeEEEEEE
Confidence 3344545555555 567788999999999999875
No 6
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=9.98 E-value=65 Score=26.30 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=26.2
Q ss_pred eeeeeEEecCc-cEEEEeecCCchhhhheec
Q 026010 124 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMN 153 (245)
Q Consensus 124 ~iY~atIVPs~-T~~VVsvg~tEAKVEai~n 153 (245)
-+|+|+||=-. ..+++-+.+++.||+++.+
T Consensus 107 ~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~ 137 (164)
T 2f1f_A 107 EIFRGQIIDVTPSLYTVQLAGTSGKLDAFLA 137 (164)
T ss_dssp HHTTCEEEEECSSEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCEEEEEEeCCHHHHHHHHH
Confidence 47999999985 7999999999999998765
No 7
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=9.80 E-value=2.9e+02 Score=20.77 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=25.0
Q ss_pred eEEecCccEEEEe----ecCCchhhhheeccceeeecC
Q 026010 128 TTLVPSRTFCIVS----FGHSEAKIEAIMNDFIQLKPQ 161 (245)
Q Consensus 128 atIVPs~T~~VVs----vg~tEAKVEai~ndFiqLr~~ 161 (245)
|=|-|.+.+..|. +|++.-||.+|..+.|.|++.
T Consensus 38 ALV~~dg~v~~V~~G~yiG~n~G~I~~I~~~~I~l~E~ 75 (93)
T 2y4x_A 38 ALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEI 75 (93)
T ss_dssp EEEEETTEEEEECTTCEETTTTEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCEEEEccCCEeccCCCEEEEEeCCeEEEEEE
Confidence 3344555555565 567788999999999999875
No 8
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=9.33 E-value=66 Score=26.40 Aligned_cols=30 Identities=7% Similarity=0.396 Sum_probs=26.3
Q ss_pred eeeeeEEecCc-cEEEEeecCCchhhhheec
Q 026010 124 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMN 153 (245)
Q Consensus 124 ~iY~atIVPs~-T~~VVsvg~tEAKVEai~n 153 (245)
-+|+|+||=-. ..+++-+..++.||+++.+
T Consensus 108 ~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~ 138 (165)
T 2pc6_A 108 DIFRGNIIDVTNELYTIELTGTRSKLDGFLQ 138 (165)
T ss_dssp HHTTCEEEEEETTEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEEcCCEEEEEEcCCHHHHHHHHH
Confidence 47999999985 7999999999999998765
No 9
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=8.81 E-value=76 Score=27.01 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=26.2
Q ss_pred eeeeeEEecCc-cEEEEeecCCchhhhheec
Q 026010 124 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMN 153 (245)
Q Consensus 124 ~iY~atIVPs~-T~~VVsvg~tEAKVEai~n 153 (245)
-+|+|+||=-. ..+++-+..+..||+++.+
T Consensus 134 ~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~ 164 (193)
T 2fgc_A 134 EIFRGKIIDVSREGAIIEITGARSKVEAFIN 164 (193)
T ss_dssp HHTTCEEEEECSSEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEEcCCEEEEEEcCCHHHHHHHHH
Confidence 57999999985 7999999999999998765
No 10
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=8.32 E-value=4.1e+02 Score=21.96 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=26.4
Q ss_pred ccccccCCccccceEEecCC----CCCCcceEEeecceeeeeEEecCc
Q 026010 91 ESVDLSGDMGAVGRILVPGT----AEGNHEMFLDLKGTIYKTTLVPSR 134 (245)
Q Consensus 91 ~slDLsGD~GAVGRl~V~~~----~~~~~~L~LDLKG~iY~atIVPs~ 134 (245)
+-+|+++|.|.+=+++..+. |....-|.+.+.|.. .++++-+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~ 63 (336)
T 1p5q_A 17 RGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR 63 (336)
T ss_dssp -----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE
T ss_pred cceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC
Confidence 56888999999988888763 333456778887775 55655553
Done!