Query 026010
Match_columns 245
No_of_seqs 31 out of 33
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 03:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026010.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026010hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v5va1 b.44.2.1 (A:313-401) G 26.7 34 0.0025 23.0 3.9 33 101-134 44-76 (89)
2 d1vloa1 b.44.2.1 (A:278-367) G 19.1 49 0.0036 22.1 3.5 21 114-134 58-78 (90)
3 d1wosa1 b.44.2.1 (A:279-361) G 18.5 60 0.0044 21.0 3.8 23 112-134 54-76 (83)
4 d1pj5a1 b.44.2.1 (A:743-830) N 18.4 79 0.0057 21.0 4.5 21 114-134 57-77 (88)
5 d2bk0a1 d.129.3.1 (A:2-154) Ma 12.4 56 0.0041 24.3 2.5 27 71-109 30-56 (153)
6 d1wfja_ b.7.1.2 (A:) C2 domain 11.2 1.1E+02 0.0083 20.5 3.7 13 96-108 3-15 (136)
7 d2d4za3 d.37.1.1 (A:527-606,A: 10.7 40 0.0029 22.8 1.0 38 145-182 10-49 (160)
8 d1bh9b_ a.22.1.3 (B:) TAF(II)2 10.6 31 0.0022 24.6 0.4 16 220-235 6-21 (89)
9 d1scza_ c.43.1.1 (A:) Dihydrol 10.4 25 0.0018 28.1 -0.2 60 93-166 142-208 (233)
10 d2bw4a1 b.6.1.3 (A:8-164) Nitr 10.4 76 0.0055 23.2 2.6 28 115-143 41-72 (157)
No 1
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.70 E-value=34 Score=23.03 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=23.7
Q ss_pred ccceEEecCCCCCCcceEEeecceeeeeEEecCc
Q 026010 101 AVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSR 134 (245)
Q Consensus 101 AVGRl~V~~~~~~~~~L~LDLKG~iY~atIVPs~ 134 (245)
|.|.|-...+.. ...|.+++.|..|.|+|+..|
T Consensus 44 ala~v~~~~~~~-g~~v~v~i~g~~~~a~v~~~P 76 (89)
T d1v5va1 44 GIAFVKEEYAKP-GIEIEVEIRGQRKKAVTVTPP 76 (89)
T ss_dssp EEEEEEGGGCST-TCEEEEEETTEEEEEEEECSC
T ss_pred EEEEECHHHcCC-CCEEEEEECCeEEEEEEECCC
Confidence 445555443333 368899999999999999876
No 2
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=19.12 E-value=49 Score=22.09 Aligned_cols=21 Identities=0% Similarity=0.091 Sum_probs=18.8
Q ss_pred CcceEEeecceeeeeEEecCc
Q 026010 114 NHEMFLDLKGTIYKTTLVPSR 134 (245)
Q Consensus 114 ~~~L~LDLKG~iY~atIVPs~ 134 (245)
+..+.+++.|..|.|+|++.+
T Consensus 58 g~~~~v~v~g~~~~a~v~~~P 78 (90)
T d1vloa1 58 GETAIVQIRNREMPVKVTKPV 78 (90)
T ss_dssp CSEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEECCC
Confidence 467899999999999999887
No 3
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=18.46 E-value=60 Score=21.02 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.4
Q ss_pred CCCcceEEeecceeeeeEEecCc
Q 026010 112 EGNHEMFLDLKGTIYKTTLVPSR 134 (245)
Q Consensus 112 ~~~~~L~LDLKG~iY~atIVPs~ 134 (245)
.+..-+.++.-|..|.|+|++.|
T Consensus 54 ~~~~~~~~~~~g~~~~a~v~~~P 76 (83)
T d1wosa1 54 IGDQLGVVFPGGKLVEALVVKKP 76 (83)
T ss_dssp TTCEEEEEETTTEEEEEEEECSC
T ss_pred CCCeEEEEEECCeEEEEEEECCC
Confidence 34566778899999999999876
No 4
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=18.38 E-value=79 Score=21.00 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=18.3
Q ss_pred CcceEEeecceeeeeEEecCc
Q 026010 114 NHEMFLDLKGTIYKTTLVPSR 134 (245)
Q Consensus 114 ~~~L~LDLKG~iY~atIVPs~ 134 (245)
...|.+++-|..|.|+|+..+
T Consensus 57 g~~~~V~~~g~~~~a~v~~~P 77 (88)
T d1pj5a1 57 GDSVDIEYFGRRITATVTEDP 77 (88)
T ss_dssp TCEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEEccC
Confidence 478899999999999999865
No 5
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}
Probab=12.42 E-value=56 Score=24.28 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=16.4
Q ss_pred cceeeccccccceeeeeecCccccccCCccccceEEecC
Q 026010 71 LPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPG 109 (245)
Q Consensus 71 lPLvlp~kv~rtk~LvE~eG~slDLsGD~GAVGRl~V~~ 109 (245)
+|=++|+.+ .+++++|| |.+|.|..-.
T Consensus 30 ~Pk~~P~~i-----------~sveveGd-G~~GsIr~~~ 56 (153)
T d2bk0a1 30 LPKAAPGAY-----------KSVEIKGD-GGPGTLKIIT 56 (153)
T ss_dssp HHHHCGGGC-----------SEEEEESS-SSTTCEEEEE
T ss_pred cccccccee-----------eEEEEECC-CCCCeEEEEE
Confidence 466666644 34556677 7777765543
No 6
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.20 E-value=1.1e+02 Score=20.50 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=9.1
Q ss_pred cCCccccceEEec
Q 026010 96 SGDMGAVGRILVP 108 (245)
Q Consensus 96 sGD~GAVGRl~V~ 108 (245)
+|-.|.+|.|.|.
T Consensus 3 ~~~~~p~G~L~V~ 15 (136)
T d1wfja_ 3 SGSSGPHGTLEVV 15 (136)
T ss_dssp CCCCCCEEEEEEE
T ss_pred CCCCCCcEEEEEE
Confidence 4667778877764
No 7
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.69 E-value=40 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=27.8
Q ss_pred chhhhhee-ccceeeecCcchhhhh-hccccccccccccc
Q 026010 145 EAKIEAIM-NDFIQLKPQSNVYEAE-TMVEGTLDGFLFDS 182 (245)
Q Consensus 145 EAKVEai~-ndFiqLr~~~~~~ea~-t~VeGtldg~~fds 182 (245)
.-||+.|| .+++.+.++..+.++. .+.+....++-...
T Consensus 10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd 49 (160)
T d2d4za3 10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD 49 (160)
T ss_dssp SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEES
T ss_pred ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCcccccc
Confidence 34888886 7999999999999996 55555555555433
No 8
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.61 E-value=31 Score=24.58 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=12.2
Q ss_pred chhhhhhhhhhhhhhc
Q 026010 220 KERYECWRTATATKES 235 (245)
Q Consensus 220 ~~r~~~~~~~~~~~~~ 235 (245)
..|||+||.+.-.|..
T Consensus 6 ~~RyE~fRRs~~~K~~ 21 (89)
T d1bh9b_ 6 LNRYEMYRRSAFPKAA 21 (89)
T ss_dssp HHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHhhCCHHH
Confidence 4699999988766543
No 9
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=10.45 E-value=25 Score=28.06 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=39.9
Q ss_pred ccccCCccccceEEecCCCCCCcceEEeecceeeeeEEecCccEEEEeecCCchhhhheecc-------ceeeecCcchh
Q 026010 93 VDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND-------FIQLKPQSNVY 165 (245)
Q Consensus 93 lDLsGD~GAVGRl~V~~~~~~~~~L~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEai~nd-------FiqLr~~~~~~ 165 (245)
=||+| |-+.|++ |-.-|+.|-+-|++-+..|++++|....+...+-.+ .+-|.+++++.
T Consensus 142 ~d~~g-----gTfTISN---------lG~~g~~~~tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRvi 207 (233)
T d1scza_ 142 EDLTG-----GNFTITN---------GGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLI 207 (233)
T ss_dssp HHHSC-----CSEEEEE---------GGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTC
T ss_pred HHhCC-----CcEEEEc---------CccccceeeeeecCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchh
Confidence 35665 6667763 234688888999999999999999987765322111 25566666654
Q ss_pred h
Q 026010 166 E 166 (245)
Q Consensus 166 e 166 (245)
+
T Consensus 208 D 208 (233)
T d1scza_ 208 D 208 (233)
T ss_dssp C
T ss_pred c
Confidence 3
No 10
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=10.39 E-value=76 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=15.2
Q ss_pred cceEEeecceeeeeEE----ecCccEEEEeecC
Q 026010 115 HEMFLDLKGTIYKTTL----VPSRTFCIVSFGH 143 (245)
Q Consensus 115 ~~L~LDLKG~iY~atI----VPs~T~~VVsvg~ 143 (245)
..+.|++.|..|+++. +|.+| +.|+.|.
T Consensus 41 ~~~~i~~~G~~~~~~~~NG~~PGP~-I~v~~GD 72 (157)
T d2bw4a1 41 KKLVIDREGTEIHAMTFNGSVPGPL-MVVHEND 72 (157)
T ss_dssp EEEECSTTCCEEEEEEETTBSSCCE-EEEETTC
T ss_pred EEEEECCCCeEEEEEEECCccCCce-EEEECCc
Confidence 4455555565554432 57776 4555554
Done!