Query 026011
Match_columns 245
No_of_seqs 344 out of 1729
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:39:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 1.9E-43 4.1E-48 288.9 21.3 233 5-245 3-236 (236)
2 PLN02412 probable glutathione 100.0 1.8E-32 4E-37 215.1 17.6 161 85-245 6-166 (167)
3 PTZ00056 glutathione peroxidas 100.0 8.2E-32 1.8E-36 216.8 17.2 162 82-244 13-179 (199)
4 PRK10606 btuE putative glutath 100.0 2.3E-31 5E-36 210.4 16.9 159 86-245 3-183 (183)
5 cd00340 GSH_Peroxidase Glutath 100.0 1.8E-30 3.8E-35 201.0 15.6 150 88-238 2-151 (152)
6 PTZ00256 glutathione peroxidas 100.0 3.9E-30 8.4E-35 204.9 17.6 162 84-245 16-183 (183)
7 COG0386 BtuE Glutathione perox 100.0 3.4E-30 7.4E-35 191.6 15.3 158 87-245 4-162 (162)
8 TIGR02540 gpx7 putative glutat 100.0 1.2E-29 2.5E-34 196.7 16.2 152 88-243 2-153 (153)
9 KOG1651 Glutathione peroxidase 100.0 5.6E-29 1.2E-33 187.4 13.8 162 84-245 10-171 (171)
10 COG1225 Bcp Peroxiredoxin [Pos 99.9 6.2E-27 1.3E-31 178.3 14.7 149 81-242 3-155 (157)
11 PF08534 Redoxin: Redoxin; In 99.9 2E-26 4.2E-31 177.0 10.5 133 83-231 1-136 (146)
12 PRK09437 bcp thioredoxin-depen 99.9 3.5E-25 7.6E-30 171.6 14.3 147 81-240 3-150 (154)
13 PRK15412 thiol:disulfide inter 99.9 1.2E-25 2.6E-30 179.3 11.9 135 82-244 39-177 (185)
14 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 2.1E-25 4.5E-30 166.3 11.4 123 84-225 1-124 (124)
15 cd03017 PRX_BCP Peroxiredoxin 99.9 5E-25 1.1E-29 167.8 11.7 138 86-239 1-139 (140)
16 cd03018 PRX_AhpE_like Peroxire 99.9 9.5E-25 2.1E-29 168.1 12.5 131 83-230 2-134 (149)
17 cd02969 PRX_like1 Peroxiredoxi 99.9 2E-24 4.2E-29 170.3 13.8 143 85-244 1-153 (171)
18 PRK03147 thiol-disulfide oxido 99.9 2.4E-24 5.3E-29 169.8 14.3 139 80-242 33-171 (173)
19 PRK00522 tpx lipid hydroperoxi 99.9 3.9E-24 8.4E-29 167.9 14.4 144 81-241 17-164 (167)
20 TIGR00385 dsbE periplasmic pro 99.9 2.3E-24 5E-29 170.2 12.8 138 81-245 33-173 (173)
21 cd03015 PRX_Typ2cys Peroxiredo 99.9 6.4E-24 1.4E-28 167.7 14.9 140 84-242 1-156 (173)
22 PRK13190 putative peroxiredoxi 99.9 4.3E-24 9.2E-29 172.5 14.0 143 82-243 2-154 (202)
23 TIGR03137 AhpC peroxiredoxin. 99.9 2.7E-24 5.9E-29 171.8 12.1 141 83-241 3-154 (187)
24 PRK10382 alkyl hydroperoxide r 99.9 1.3E-23 2.7E-28 167.2 13.8 143 82-242 2-155 (187)
25 cd03014 PRX_Atyp2cys Peroxired 99.9 1.2E-23 2.7E-28 160.9 13.1 126 84-229 2-129 (143)
26 PRK13599 putative peroxiredoxi 99.9 2.1E-23 4.6E-28 169.5 14.2 143 83-242 3-155 (215)
27 cd03010 TlpA_like_DsbE TlpA-li 99.9 8.2E-24 1.8E-28 158.7 10.3 123 87-235 2-126 (127)
28 PRK13191 putative peroxiredoxi 99.9 3.3E-23 7.2E-28 168.5 14.1 143 82-242 7-160 (215)
29 cd02968 SCO SCO (an acronym fo 99.9 2E-23 4.3E-28 159.4 10.3 137 87-228 1-142 (142)
30 cd03016 PRX_1cys Peroxiredoxin 99.9 8.2E-23 1.8E-27 165.2 13.6 141 84-242 1-153 (203)
31 cd03012 TlpA_like_DipZ_like Tl 99.9 2.6E-23 5.7E-28 155.8 9.8 113 98-229 13-125 (126)
32 TIGR02661 MauD methylamine deh 99.9 1.6E-22 3.5E-27 161.8 14.2 131 82-242 46-178 (189)
33 PRK15000 peroxidase; Provision 99.9 1.8E-22 4E-27 162.5 14.4 142 83-242 3-161 (200)
34 PTZ00137 2-Cys peroxiredoxin; 99.9 1.3E-22 2.9E-27 168.2 13.6 143 81-242 67-224 (261)
35 PRK13189 peroxiredoxin; Provis 99.9 4.8E-22 1E-26 162.5 14.5 145 81-243 8-163 (222)
36 cd02967 mauD Methylamine utili 99.9 3E-22 6.5E-27 147.2 11.7 110 89-226 1-112 (114)
37 cd02971 PRX_family Peroxiredox 99.9 4.1E-22 8.8E-27 151.7 12.0 129 87-231 1-131 (140)
38 PRK14018 trifunctional thiored 99.9 5.1E-22 1.1E-26 178.5 13.9 139 82-241 32-171 (521)
39 PTZ00253 tryparedoxin peroxida 99.9 4.1E-22 8.9E-27 160.7 11.9 142 82-241 6-162 (199)
40 cd03008 TryX_like_RdCVF Trypar 99.9 1.6E-22 3.4E-27 154.0 8.5 107 99-226 16-129 (146)
41 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 7.4E-22 1.6E-26 147.0 11.3 121 89-238 1-121 (123)
42 cd02970 PRX_like2 Peroxiredoxi 99.9 7.5E-22 1.6E-26 151.6 10.9 129 87-228 1-148 (149)
43 COG0450 AhpC Peroxiredoxin [Po 99.9 2.4E-21 5.2E-26 150.8 13.6 144 82-243 3-161 (194)
44 PLN02919 haloacid dehalogenase 99.9 8.9E-22 1.9E-26 191.9 13.4 146 80-244 389-537 (1057)
45 cd02966 TlpA_like_family TlpA- 99.9 8.2E-21 1.8E-25 138.4 11.3 116 90-228 1-116 (116)
46 cd03013 PRX5_like Peroxiredoxi 99.8 6.1E-21 1.3E-25 147.9 10.6 132 84-230 1-141 (155)
47 TIGR01626 ytfJ_HI0045 conserve 99.8 1.8E-20 3.9E-25 147.6 11.0 132 82-237 23-174 (184)
48 PRK13728 conjugal transfer pro 99.8 2E-20 4.3E-25 146.6 10.2 121 84-244 51-172 (181)
49 cd02964 TryX_like_family Trypa 99.8 7.3E-21 1.6E-25 143.7 7.4 110 96-227 4-117 (132)
50 COG1999 Uncharacterized protei 99.8 7.7E-20 1.7E-24 147.7 13.6 151 90-245 49-206 (207)
51 PF02630 SCO1-SenC: SCO1/SenC; 99.8 2.6E-20 5.5E-25 147.0 8.7 140 84-228 28-173 (174)
52 cd03009 TryX_like_TryX_NRX Try 99.8 3E-20 6.4E-25 140.1 6.7 111 93-226 3-116 (131)
53 PF00255 GSHPx: Glutathione pe 99.8 7.2E-19 1.6E-23 126.6 11.3 107 89-196 2-108 (108)
54 KOG0855 Alkyl hydroperoxide re 99.8 2.8E-18 6E-23 129.3 11.6 145 81-243 62-209 (211)
55 PF13905 Thioredoxin_8: Thiore 99.8 5.1E-19 1.1E-23 125.8 6.3 94 108-222 1-95 (95)
56 TIGR02738 TrbB type-F conjugat 99.7 1.8E-17 4E-22 127.6 9.4 109 98-243 44-153 (153)
57 cd02950 TxlA TRX-like protein 99.7 1.8E-17 4E-22 126.5 8.0 108 92-244 2-111 (142)
58 KOG2792 Putative cytochrome C 99.7 6.7E-17 1.5E-21 130.2 10.1 151 89-244 120-276 (280)
59 KOG0852 Alkyl hydroperoxide re 99.7 4.9E-16 1.1E-20 118.2 11.1 130 83-230 5-144 (196)
60 cd02985 TRX_CDSP32 TRX family, 99.6 2.4E-15 5.3E-20 108.6 10.4 90 104-240 11-100 (103)
61 KOG0910 Thioredoxin-like prote 99.6 2.6E-15 5.7E-20 112.6 8.9 91 107-245 60-150 (150)
62 KOG2501 Thioredoxin, nucleored 99.6 1E-14 2.2E-19 110.5 7.4 115 91-226 15-132 (157)
63 cd02963 TRX_DnaJ TRX domain, D 99.5 8E-14 1.7E-18 102.0 9.9 91 105-242 21-111 (111)
64 cd02948 TRX_NDPK TRX domain, T 99.5 8.1E-14 1.8E-18 100.4 9.1 87 107-242 16-102 (102)
65 KOG0854 Alkyl hydroperoxide re 99.5 2.5E-13 5.4E-18 103.5 12.0 150 81-243 5-168 (224)
66 cd02953 DsbDgamma DsbD gamma f 99.5 1E-13 2.2E-18 100.1 8.9 91 107-240 10-104 (104)
67 cd02951 SoxW SoxW family; SoxW 99.5 1.7E-13 3.7E-18 102.3 10.0 104 107-244 12-120 (125)
68 TIGR02740 TraF-like TraF-like 99.5 6.1E-14 1.3E-18 117.9 7.7 107 99-243 157-264 (271)
69 cd02999 PDI_a_ERp44_like PDIa 99.5 8.1E-14 1.7E-18 100.0 7.0 86 104-238 14-99 (100)
70 cd02956 ybbN ybbN protein fami 99.5 2.3E-13 5.1E-18 96.6 9.0 85 107-239 11-95 (96)
71 PHA02278 thioredoxin-like prot 99.4 5.8E-13 1.3E-17 95.9 8.8 87 107-237 13-99 (103)
72 COG2077 Tpx Peroxiredoxin [Pos 99.4 1.8E-12 3.8E-17 96.8 10.9 127 81-226 17-147 (158)
73 PRK09381 trxA thioredoxin; Pro 99.4 1.2E-12 2.6E-17 95.2 9.7 90 107-244 20-109 (109)
74 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 6.3E-13 1.4E-17 95.4 7.7 94 96-237 6-99 (101)
75 cd02954 DIM1 Dim1 family; Dim1 99.4 5.4E-13 1.2E-17 97.1 7.2 79 107-233 13-91 (114)
76 PRK10996 thioredoxin 2; Provis 99.4 6.6E-13 1.4E-17 101.0 7.8 89 107-243 51-139 (139)
77 COG3118 Thioredoxin domain-con 99.4 1E-12 2.2E-17 108.9 8.2 90 107-244 42-131 (304)
78 PF13098 Thioredoxin_2: Thiore 99.4 1.5E-13 3.2E-18 100.5 2.3 106 107-239 4-112 (112)
79 KOG0907 Thioredoxin [Posttrans 99.4 4.8E-12 1E-16 91.3 9.5 85 107-241 20-104 (106)
80 cd02994 PDI_a_TMX PDIa family, 99.4 3E-12 6.5E-17 91.8 8.5 86 106-240 15-100 (101)
81 PLN00410 U5 snRNP protein, DIM 99.4 4.4E-12 9.5E-17 95.8 9.7 91 107-244 22-121 (142)
82 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 5.9E-12 1.3E-16 90.8 9.2 85 107-238 18-103 (104)
83 cd02993 PDI_a_APS_reductase PD 99.4 3.8E-12 8.3E-17 92.7 8.1 88 107-238 20-108 (109)
84 cd03006 PDI_a_EFP1_N PDIa fami 99.3 1.1E-11 2.4E-16 90.7 8.7 85 107-238 28-112 (113)
85 cd03000 PDI_a_TMX3 PDIa family 99.3 1.3E-11 2.9E-16 89.0 8.9 88 107-242 14-103 (104)
86 TIGR01126 pdi_dom protein disu 99.3 9.7E-12 2.1E-16 88.9 8.0 89 107-242 12-101 (102)
87 cd03002 PDI_a_MPD1_like PDI fa 99.3 1.2E-11 2.6E-16 89.7 8.1 88 107-239 17-108 (109)
88 cd03005 PDI_a_ERp46 PDIa famil 99.3 7.2E-12 1.6E-16 89.7 6.8 82 110-238 18-101 (102)
89 cd02949 TRX_NTR TRX domain, no 99.3 2E-11 4.3E-16 87.0 9.0 85 107-239 12-96 (97)
90 TIGR01295 PedC_BrcD bacterioci 99.3 6E-11 1.3E-15 88.1 11.3 98 107-239 22-120 (122)
91 TIGR01068 thioredoxin thioredo 99.2 6.8E-11 1.5E-15 84.2 9.3 88 108-243 14-101 (101)
92 PF00085 Thioredoxin: Thioredo 99.2 6E-11 1.3E-15 84.8 8.9 87 107-241 16-102 (103)
93 cd02962 TMX2 TMX2 family; comp 99.2 4.1E-11 8.9E-16 92.1 8.5 81 107-228 46-126 (152)
94 cd03065 PDI_b_Calsequestrin_N 99.2 9.1E-11 2E-15 86.6 9.3 88 108-243 27-119 (120)
95 PRK00293 dipZ thiol:disulfide 99.2 5.7E-11 1.2E-15 109.9 10.1 96 104-243 470-570 (571)
96 cd02959 ERp19 Endoplasmic reti 99.2 2.1E-11 4.6E-16 89.9 5.6 46 104-150 15-60 (117)
97 PTZ00443 Thioredoxin domain-co 99.2 9.5E-11 2.1E-15 95.7 9.9 88 108-243 52-139 (224)
98 cd02996 PDI_a_ERp44 PDIa famil 99.2 4.6E-11 9.9E-16 86.8 7.2 86 107-239 17-108 (108)
99 cd02997 PDI_a_PDIR PDIa family 99.2 7.6E-11 1.7E-15 84.6 8.0 87 107-238 16-103 (104)
100 cd02984 TRX_PICOT TRX domain, 99.2 1.7E-10 3.7E-15 81.9 8.4 83 108-239 14-96 (97)
101 cd02986 DLP Dim1 family, Dim1- 99.2 3.7E-10 8E-15 81.7 10.0 43 107-150 13-55 (114)
102 cd02998 PDI_a_ERp38 PDIa famil 99.2 1.2E-10 2.7E-15 83.6 7.4 87 107-238 17-104 (105)
103 cd02961 PDI_a_family Protein D 99.1 9.4E-11 2E-15 83.0 5.9 86 107-238 14-100 (101)
104 cd03001 PDI_a_P5 PDIa family, 99.1 6.2E-10 1.3E-14 79.7 9.6 85 108-239 18-102 (103)
105 PTZ00051 thioredoxin; Provisio 99.1 5.2E-10 1.1E-14 79.6 8.7 80 107-236 17-96 (98)
106 cd02957 Phd_like Phosducin (Ph 99.1 4.6E-10 1E-14 82.3 8.3 73 108-230 24-96 (113)
107 cd02965 HyaE HyaE family; HyaE 99.1 7.3E-10 1.6E-14 80.2 8.9 82 107-236 26-109 (111)
108 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 4.8E-10 1E-14 80.4 7.3 44 107-150 17-61 (104)
109 cd02975 PfPDO_like_N Pyrococcu 99.1 1.5E-09 3.3E-14 79.5 9.6 88 107-244 21-111 (113)
110 cd02989 Phd_like_TxnDC9 Phosdu 99.0 1.9E-09 4.1E-14 79.0 9.3 42 107-150 21-62 (113)
111 cd02955 SSP411 TRX domain, SSP 99.0 3E-09 6.6E-14 79.0 10.5 45 105-150 12-59 (124)
112 TIGR00424 APS_reduc 5'-adenyly 99.0 1.3E-09 2.8E-14 97.5 9.6 93 106-242 369-462 (463)
113 PTZ00102 disulphide isomerase; 99.0 9.2E-10 2E-14 100.0 8.0 105 93-243 359-465 (477)
114 TIGR00411 redox_disulf_1 small 99.0 4.8E-09 1E-13 71.9 9.2 81 111-243 2-82 (82)
115 cd02987 Phd_like_Phd Phosducin 99.0 4.3E-09 9.2E-14 83.1 9.7 41 108-150 83-123 (175)
116 cd02952 TRP14_like Human TRX-r 99.0 1.8E-09 3.9E-14 79.5 6.7 44 106-150 19-69 (119)
117 PF00837 T4_deiodinase: Iodoth 99.0 3.1E-09 6.8E-14 86.1 8.4 146 78-242 69-236 (237)
118 cd02958 UAS UAS family; UAS is 99.0 1.4E-08 3E-13 74.5 11.2 96 104-244 13-112 (114)
119 PLN02309 5'-adenylylsulfate re 98.9 5.6E-09 1.2E-13 93.5 10.0 92 107-242 364-456 (457)
120 cd02947 TRX_family TRX family; 98.9 9.6E-09 2.1E-13 71.2 9.0 82 109-239 11-92 (93)
121 cd02988 Phd_like_VIAF Phosduci 98.9 9.6E-09 2.1E-13 82.2 9.8 41 108-150 102-142 (192)
122 cd02992 PDI_a_QSOX PDIa family 98.9 7.4E-09 1.6E-13 76.0 8.4 43 108-150 19-63 (114)
123 KOG0908 Thioredoxin-like prote 98.9 1.5E-08 3.2E-13 82.0 8.8 92 102-243 15-106 (288)
124 cd02982 PDI_b'_family Protein 98.8 3.9E-08 8.4E-13 70.4 8.9 91 108-243 12-103 (103)
125 TIGR01130 ER_PDI_fam protein d 98.8 1.3E-08 2.8E-13 91.9 7.7 90 107-243 17-109 (462)
126 PTZ00102 disulphide isomerase; 98.7 2.9E-08 6.2E-13 90.3 8.0 90 107-244 48-139 (477)
127 TIGR00412 redox_disulf_2 small 98.7 6.7E-08 1.5E-12 65.6 7.2 35 112-147 2-36 (76)
128 PTZ00062 glutaredoxin; Provisi 98.7 1.3E-07 2.8E-12 76.1 9.2 76 109-242 18-93 (204)
129 TIGR02187 GlrX_arch Glutaredox 98.7 1.3E-07 2.9E-12 77.1 9.1 92 105-243 16-111 (215)
130 PF13728 TraF: F plasmid trans 98.6 2E-07 4.4E-12 75.9 9.0 101 101-239 113-214 (215)
131 cd02960 AGR Anterior Gradient 98.6 4.2E-07 9.1E-12 67.7 8.8 25 106-130 21-45 (130)
132 TIGR02739 TraF type-F conjugat 98.6 4.2E-07 9E-12 75.5 9.5 105 102-244 144-249 (256)
133 TIGR01130 ER_PDI_fam protein d 98.6 2E-07 4.4E-12 84.2 7.8 89 107-243 363-454 (462)
134 COG0678 AHP1 Peroxiredoxin [Po 98.5 7.5E-07 1.6E-11 66.8 8.7 132 82-228 3-147 (165)
135 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 1.1E-06 2.4E-11 61.5 9.1 46 103-150 7-52 (89)
136 PRK13703 conjugal pilus assemb 98.5 9E-07 1.9E-11 73.1 9.2 104 103-244 138-242 (248)
137 KOG0190 Protein disulfide isom 98.4 4.7E-07 1E-11 81.1 7.1 88 108-242 42-131 (493)
138 smart00594 UAS UAS domain. 98.4 1.9E-06 4.2E-11 63.9 9.3 89 106-239 25-121 (122)
139 COG4232 Thiol:disulfide interc 98.4 8.3E-07 1.8E-11 80.4 7.0 96 105-242 471-567 (569)
140 TIGR02187 GlrX_arch Glutaredox 98.3 3.6E-06 7.7E-11 68.7 9.6 84 106-241 131-214 (215)
141 PF14595 Thioredoxin_9: Thiore 98.3 5.1E-07 1.1E-11 67.6 2.7 90 103-239 36-125 (129)
142 PHA02125 thioredoxin-like prot 98.3 3.7E-06 8E-11 56.8 6.5 32 112-150 2-33 (75)
143 PF13899 Thioredoxin_7: Thiore 98.2 3.4E-06 7.3E-11 57.9 6.3 43 107-150 16-61 (82)
144 cd02973 TRX_GRX_like Thioredox 98.2 1.6E-05 3.5E-10 52.1 7.7 37 112-150 3-39 (67)
145 KOG0541 Alkyl hydroperoxide re 98.1 4.1E-05 8.9E-10 57.9 10.0 135 79-228 6-153 (171)
146 PF09695 YtfJ_HI0045: Bacteria 98.1 0.00023 4.9E-09 54.3 13.8 143 83-242 2-157 (160)
147 cd01659 TRX_superfamily Thiore 98.1 1.9E-05 4.1E-10 49.9 7.0 37 112-150 1-37 (69)
148 COG0526 TrxA Thiol-disulfide i 98.1 6.7E-06 1.5E-10 58.8 5.2 49 101-150 25-73 (127)
149 PF05988 DUF899: Bacterial pro 97.9 0.00031 6.8E-09 56.2 11.7 125 84-228 42-174 (211)
150 KOG0191 Thioredoxin/protein di 97.9 0.00011 2.4E-09 65.2 10.1 89 107-243 46-134 (383)
151 KOG0190 Protein disulfide isom 97.9 1.8E-05 3.9E-10 71.2 5.0 41 107-147 383-424 (493)
152 TIGR02196 GlrX_YruB Glutaredox 97.8 0.00021 4.7E-09 47.1 8.2 32 112-150 2-33 (74)
153 cd03007 PDI_a_ERp29_N PDIa fam 97.8 0.00013 2.8E-09 53.4 7.5 93 107-241 17-114 (116)
154 PF04592 SelP_N: Selenoprotein 97.8 0.00021 4.7E-09 57.9 9.0 116 86-227 8-127 (238)
155 cd02991 UAS_ETEA UAS family, E 97.7 0.00026 5.7E-09 51.9 8.6 93 105-245 14-115 (116)
156 KOG0912 Thiol-disulfide isomer 97.6 0.00023 5E-09 59.7 6.9 89 108-243 13-106 (375)
157 COG2143 Thioredoxin-related pr 97.5 0.0015 3.2E-08 49.7 9.5 105 104-240 38-146 (182)
158 PF05176 ATP-synt_10: ATP10 pr 97.4 0.0013 2.8E-08 54.8 9.7 135 84-240 97-247 (252)
159 TIGR02200 GlrX_actino Glutared 97.4 0.00087 1.9E-08 44.8 7.1 32 112-150 2-33 (77)
160 PF13911 AhpC-TSA_2: AhpC/TSA 97.3 0.0016 3.6E-08 47.4 8.4 83 130-227 2-112 (115)
161 PRK11509 hydrogenase-1 operon 97.3 0.0019 4.2E-08 48.2 8.7 89 109-244 35-125 (132)
162 cd03023 DsbA_Com1_like DsbA fa 97.3 0.00089 1.9E-08 50.9 6.6 41 107-149 4-44 (154)
163 PRK10877 protein disulfide iso 97.2 0.0018 4E-08 53.4 8.0 40 106-149 105-144 (232)
164 PF03190 Thioredox_DsbH: Prote 97.2 0.001 2.2E-08 51.5 5.8 30 99-128 28-57 (163)
165 PRK11657 dsbG disulfide isomer 97.1 0.0052 1.1E-07 51.4 10.3 124 107-240 116-249 (251)
166 KOG4277 Uncharacterized conser 97.1 0.00089 1.9E-08 56.2 5.5 36 109-144 44-79 (468)
167 PF13192 Thioredoxin_3: Thiore 97.1 0.0014 3.1E-08 44.1 5.2 23 116-138 6-28 (76)
168 KOG1731 FAD-dependent sulfhydr 97.0 0.00061 1.3E-08 61.8 3.9 60 109-178 58-120 (606)
169 TIGR02180 GRX_euk Glutaredoxin 97.0 0.0018 3.9E-08 44.0 5.2 46 112-167 1-46 (84)
170 PF13778 DUF4174: Domain of un 97.0 0.0097 2.1E-07 43.7 9.4 106 103-242 3-111 (118)
171 KOG0191 Thioredoxin/protein di 96.8 0.005 1.1E-07 54.7 7.6 41 109-149 163-204 (383)
172 cd03019 DsbA_DsbA DsbA family, 96.7 0.0084 1.8E-07 46.8 7.3 42 107-149 14-55 (178)
173 PF06110 DUF953: Eukaryotic pr 96.6 0.0053 1.2E-07 45.1 5.5 44 106-150 17-67 (119)
174 PF02114 Phosducin: Phosducin; 96.4 0.0073 1.6E-07 50.8 5.9 42 107-150 145-186 (265)
175 COG4312 Uncharacterized protei 96.3 0.046 1E-06 44.0 9.5 84 89-182 53-144 (247)
176 cd03020 DsbA_DsbC_DsbG DsbA fa 96.3 0.0078 1.7E-07 48.3 5.2 32 101-132 70-101 (197)
177 TIGR03143 AhpF_homolog putativ 96.2 0.025 5.4E-07 52.8 8.5 40 108-149 476-515 (555)
178 PF11009 DUF2847: Protein of u 96.0 0.038 8.3E-07 39.5 6.9 77 107-226 18-94 (105)
179 KOG4498 Uncharacterized conser 96.0 0.086 1.9E-06 41.5 9.1 55 94-148 35-91 (197)
180 PRK11200 grxA glutaredoxin 1; 95.9 0.028 6.1E-07 38.5 5.8 37 112-150 3-39 (85)
181 PRK15317 alkyl hydroperoxide r 95.4 0.09 1.9E-06 48.6 8.9 39 107-147 115-153 (517)
182 PF13462 Thioredoxin_4: Thiore 95.3 0.04 8.6E-07 42.2 5.4 50 100-150 4-55 (162)
183 cd02976 NrdH NrdH-redoxin (Nrd 94.9 0.12 2.5E-06 33.5 6.1 32 112-150 2-33 (73)
184 PF00462 Glutaredoxin: Glutare 94.8 0.084 1.8E-06 33.4 4.9 32 112-150 1-32 (60)
185 KOG3425 Uncharacterized conser 94.8 0.077 1.7E-06 38.6 5.0 47 103-150 19-74 (128)
186 KOG0914 Thioredoxin-like prote 94.8 0.025 5.4E-07 45.5 2.7 44 107-150 143-186 (265)
187 TIGR03140 AhpF alkyl hydropero 94.7 0.22 4.7E-06 46.1 9.1 39 107-147 116-154 (515)
188 cd03419 GRX_GRXh_1_2_like Glut 94.5 0.1 2.2E-06 35.0 5.1 34 112-150 2-35 (82)
189 KOG3414 Component of the U4/U6 94.1 1.3 2.8E-05 32.7 10.1 56 107-175 22-77 (142)
190 TIGR02183 GRXA Glutaredoxin, G 94.1 0.17 3.6E-06 34.8 5.4 37 112-150 2-38 (86)
191 COG1651 DsbG Protein-disulfide 94.0 1.4 2.9E-05 36.4 11.7 49 94-142 70-118 (244)
192 cd02066 GRX_family Glutaredoxi 93.8 0.18 3.8E-06 32.4 5.0 32 112-150 2-33 (72)
193 cd03418 GRX_GRXb_1_3_like Glut 93.8 0.32 6.9E-06 32.0 6.3 32 112-150 2-33 (75)
194 PLN03098 LPA1 LOW PSII ACCUMUL 93.7 0.55 1.2E-05 42.3 9.1 71 79-150 267-337 (453)
195 PRK10329 glutaredoxin-like pro 93.6 0.26 5.6E-06 33.5 5.6 32 112-150 3-34 (81)
196 cd02983 P5_C P5 family, C-term 93.3 0.49 1.1E-05 35.3 7.2 91 109-244 21-116 (130)
197 KOG0911 Glutaredoxin-related p 93.2 0.096 2.1E-06 42.4 3.3 42 107-150 16-57 (227)
198 KOG0913 Thiol-disulfide isomer 93.2 0.069 1.5E-06 43.5 2.5 41 107-148 39-79 (248)
199 TIGR02181 GRX_bact Glutaredoxi 93.1 0.31 6.7E-06 32.6 5.4 31 113-150 2-32 (79)
200 TIGR02190 GlrX-dom Glutaredoxi 93.1 0.33 7.3E-06 32.6 5.5 34 110-150 8-41 (79)
201 PRK10954 periplasmic protein d 93.0 0.18 4E-06 40.7 4.8 43 107-150 36-81 (207)
202 PHA03050 glutaredoxin; Provisi 92.6 0.26 5.6E-06 35.6 4.6 22 112-133 15-36 (108)
203 COG0695 GrxC Glutaredoxin and 92.3 0.65 1.4E-05 31.5 6.1 43 112-167 3-45 (80)
204 cd03027 GRX_DEP Glutaredoxin ( 92.2 0.82 1.8E-05 30.0 6.5 31 113-150 4-34 (73)
205 TIGR02194 GlrX_NrdH Glutaredox 91.8 0.51 1.1E-05 31.0 5.0 31 113-150 2-32 (72)
206 cd03029 GRX_hybridPRX5 Glutare 91.7 0.61 1.3E-05 30.5 5.3 32 112-150 3-34 (72)
207 PHA03075 glutaredoxin-like pro 91.7 1.3 2.9E-05 32.0 7.1 29 109-137 2-30 (123)
208 PF13848 Thioredoxin_6: Thiore 91.5 0.92 2E-05 35.2 7.1 89 107-240 93-183 (184)
209 COG1331 Highly conserved prote 90.9 1.6 3.5E-05 41.2 8.9 23 105-127 40-62 (667)
210 KOG1672 ATP binding protein [P 90.5 0.95 2.1E-05 36.0 5.9 41 107-149 83-123 (211)
211 PRK10824 glutaredoxin-4; Provi 90.3 0.81 1.7E-05 33.4 5.2 27 107-133 13-43 (115)
212 TIGR02189 GlrX-like_plant Glut 90.2 0.85 1.8E-05 32.2 5.1 34 109-150 8-41 (99)
213 TIGR00365 monothiol glutaredox 90.0 1.4 3.1E-05 31.0 6.1 37 107-150 10-50 (97)
214 cd03028 GRX_PICOT_like Glutare 89.8 1.4 3.1E-05 30.3 6.0 37 107-150 6-46 (90)
215 cd03073 PDI_b'_ERp72_ERp57 PDI 89.4 5 0.00011 28.9 8.8 31 211-242 79-110 (111)
216 cd02972 DsbA_family DsbA famil 89.2 0.52 1.1E-05 32.0 3.4 38 112-150 1-38 (98)
217 TIGR03143 AhpF_homolog putativ 89.1 2.5 5.4E-05 39.5 8.8 93 104-244 362-455 (555)
218 PRK10638 glutaredoxin 3; Provi 87.9 2.4 5.2E-05 28.6 6.0 32 112-150 4-35 (83)
219 TIGR01617 arsC_related transcr 85.7 1.6 3.5E-05 31.7 4.4 49 114-174 3-51 (117)
220 cd03035 ArsC_Yffb Arsenate Red 84.8 2.3 5E-05 30.4 4.7 48 113-172 2-49 (105)
221 PF04278 Tic22: Tic22-like fam 84.8 14 0.0003 31.4 10.1 59 86-150 73-136 (274)
222 cd02979 PHOX_C FAD-dependent P 84.1 18 0.00039 28.1 10.1 51 85-137 1-55 (167)
223 cd03036 ArsC_like Arsenate Red 84.0 2.4 5.1E-05 30.6 4.6 48 114-173 3-50 (111)
224 KOG3170 Conserved phosducin-li 84.0 1.2 2.7E-05 35.6 3.2 40 107-148 110-149 (240)
225 TIGR00995 3a0901s06TIC22 chlor 83.7 12 0.00026 31.5 9.1 132 85-242 79-214 (270)
226 COG3054 Predicted transcriptio 83.6 2.5 5.4E-05 32.3 4.6 32 211-242 148-179 (184)
227 cd03032 ArsC_Spx Arsenate Redu 83.4 3.4 7.4E-05 29.9 5.3 50 113-174 3-52 (115)
228 cd02977 ArsC_family Arsenate R 83.4 2.9 6.2E-05 29.6 4.8 48 113-172 2-49 (105)
229 PRK01655 spxA transcriptional 83.2 2.6 5.5E-05 31.5 4.6 49 113-173 3-51 (131)
230 KOG2507 Ubiquitin regulatory p 83.1 8.7 0.00019 34.3 8.3 37 207-243 75-111 (506)
231 PF05768 DUF836: Glutaredoxin- 82.9 1.6 3.4E-05 29.5 3.1 53 112-179 2-54 (81)
232 cd03072 PDI_b'_ERp44 PDIb' fam 80.5 17 0.00036 26.1 7.9 34 211-244 75-109 (111)
233 PRK12559 transcriptional regul 79.4 6.2 0.00013 29.4 5.5 49 112-172 2-50 (131)
234 COG4545 Glutaredoxin-related p 79.4 2.9 6.2E-05 27.9 3.2 41 113-167 5-45 (85)
235 PF02966 DIM1: Mitosis protein 79.1 12 0.00026 27.9 6.7 43 107-150 19-61 (133)
236 PF06764 DUF1223: Protein of u 77.8 35 0.00076 27.5 10.2 34 114-150 4-37 (202)
237 PTZ00062 glutaredoxin; Provisi 76.5 8.2 0.00018 31.2 5.8 37 107-150 111-151 (204)
238 KOG4614 Inner membrane protein 76.2 4.9 0.00011 33.0 4.3 28 212-239 250-277 (287)
239 KOG1752 Glutaredoxin and relat 75.3 8.4 0.00018 27.5 4.9 48 107-167 12-59 (104)
240 PRK13344 spxA transcriptional 74.2 9.8 0.00021 28.4 5.3 50 113-174 3-52 (132)
241 COG3019 Predicted metal-bindin 73.6 37 0.00079 25.7 8.3 32 112-150 28-59 (149)
242 TIGR03759 conj_TIGR03759 integ 73.1 10 0.00022 30.4 5.3 56 110-178 110-165 (200)
243 PRK10026 arsenate reductase; P 72.8 39 0.00084 25.6 8.6 50 112-173 4-53 (141)
244 PF06053 DUF929: Domain of unk 72.7 5.8 0.00012 33.1 4.1 34 106-139 56-89 (249)
245 KOG1364 Predicted ubiquitin re 70.3 5.5 0.00012 34.5 3.5 38 207-244 152-190 (356)
246 PF07976 Phe_hydrox_dim: Pheno 69.9 24 0.00052 27.4 6.9 72 79-150 27-116 (169)
247 cd02981 PDI_b_family Protein D 69.4 33 0.00071 23.3 8.2 36 108-147 17-52 (97)
248 PF04134 DUF393: Protein of un 66.7 14 0.00031 26.3 4.7 30 115-147 2-31 (114)
249 PRK08294 phenol 2-monooxygenas 65.5 66 0.0014 30.8 10.1 52 80-131 461-517 (634)
250 PF08821 CGGC: CGGC domain; I 63.8 9.3 0.0002 27.5 3.1 72 98-173 25-100 (107)
251 PF10673 DUF2487: Protein of u 63.5 18 0.00038 27.5 4.7 46 105-150 47-94 (142)
252 COG2179 Predicted hydrolase of 62.9 20 0.00044 28.0 5.0 61 109-178 29-90 (175)
253 PRK12759 bifunctional gluaredo 62.6 17 0.00036 32.7 5.3 32 112-150 4-35 (410)
254 TIGR03765 ICE_PFL_4695 integra 61.0 34 0.00075 24.4 5.5 68 125-220 35-102 (105)
255 PF11072 DUF2859: Protein of u 60.4 26 0.00056 26.6 5.1 70 124-221 72-141 (142)
256 PF11211 DUF2997: Protein of u 59.0 22 0.00047 21.5 3.7 31 213-243 2-34 (48)
257 PF01323 DSBA: DSBA-like thior 58.7 13 0.00027 29.0 3.5 40 111-150 1-40 (193)
258 PF13462 Thioredoxin_4: Thiore 56.7 16 0.00034 27.5 3.6 29 207-241 134-162 (162)
259 KOG1201 Hydroxysteroid 17-beta 55.3 61 0.0013 27.8 7.0 111 102-239 32-142 (300)
260 TIGR00014 arsC arsenate reduct 54.6 38 0.00082 24.4 5.1 49 113-173 2-50 (114)
261 KOG3384 Selenoprotein [General 54.3 35 0.00076 25.6 4.8 33 211-243 118-151 (154)
262 PF08806 Sep15_SelM: Sep15/Sel 53.0 18 0.00039 24.3 2.9 32 211-242 43-75 (78)
263 cd03025 DsbA_FrnE_like DsbA fa 53.0 18 0.00038 28.3 3.4 33 112-145 3-35 (193)
264 COG0552 FtsY Signal recognitio 52.9 1.5E+02 0.0033 26.0 9.1 111 107-242 136-246 (340)
265 PRK15126 thiamin pyrimidine py 50.7 1.4E+02 0.0031 24.6 10.4 35 135-178 29-63 (272)
266 cd03033 ArsC_15kD Arsenate Red 49.9 51 0.0011 23.8 5.1 48 113-172 3-50 (113)
267 TIGR01753 flav_short flavodoxi 48.0 59 0.0013 23.7 5.5 14 106-119 78-91 (140)
268 PF02563 Poly_export: Polysacc 47.0 19 0.00041 24.2 2.4 32 213-244 32-68 (82)
269 PF07411 DUF1508: Domain of un 45.1 56 0.0012 19.7 4.0 33 211-243 6-38 (49)
270 PRK12359 flavodoxin FldB; Prov 44.7 76 0.0016 24.8 5.7 14 230-243 152-165 (172)
271 PRK10853 putative reductase; P 44.0 61 0.0013 23.6 4.8 49 113-173 3-51 (118)
272 cd03031 GRX_GRX_like Glutaredo 43.9 1E+02 0.0022 23.5 6.2 25 119-150 15-39 (147)
273 cd03034 ArsC_ArsC Arsenate Red 43.3 65 0.0014 23.0 4.8 49 113-173 2-50 (112)
274 PRK10976 putative hydrolase; P 42.3 1.9E+02 0.0042 23.7 10.1 36 134-178 28-63 (266)
275 PRK06183 mhpA 3-(3-hydroxyphen 42.1 2.9E+02 0.0062 25.6 10.3 34 82-115 411-445 (538)
276 TIGR01616 nitro_assoc nitrogen 41.3 91 0.002 23.0 5.4 48 112-171 3-50 (126)
277 PF04723 GRDA: Glycine reducta 40.8 31 0.00067 25.9 2.8 36 113-148 33-75 (150)
278 PF05673 DUF815: Protein of un 40.7 1.1E+02 0.0024 25.6 6.3 94 110-219 54-147 (249)
279 COG2761 FrnE Predicted dithiol 39.1 52 0.0011 27.0 4.1 34 206-244 181-214 (225)
280 COG3011 Predicted thiol-disulf 37.9 1.3E+02 0.0028 22.7 5.7 38 108-148 6-43 (137)
281 PF01323 DSBA: DSBA-like thior 37.4 39 0.00085 26.2 3.2 29 207-240 165-193 (193)
282 PRK10530 pyridoxal phosphate ( 37.4 2.3E+02 0.005 23.2 10.2 36 134-178 29-64 (272)
283 TIGR00099 Cof-subfamily Cof su 37.3 2.3E+02 0.005 23.1 10.6 37 133-178 24-60 (256)
284 cd03024 DsbA_FrnE DsbA family, 37.1 1.5E+02 0.0032 23.1 6.6 34 114-147 3-37 (201)
285 PRK06184 hypothetical protein; 36.4 2.6E+02 0.0056 25.6 8.8 35 82-116 386-422 (502)
286 PF01106 NifU: NifU-like domai 35.8 1E+02 0.0022 20.0 4.4 34 96-130 14-47 (68)
287 PRK06756 flavodoxin; Provision 35.2 1.1E+02 0.0023 22.8 5.2 38 105-146 80-119 (148)
288 PRK13398 3-deoxy-7-phosphohept 34.4 89 0.0019 26.3 5.0 29 121-149 33-62 (266)
289 COG1393 ArsC Arsenate reductas 34.3 1.2E+02 0.0026 22.1 5.0 49 113-175 4-54 (117)
290 cd08352 Glo_EDI_BRP_like_1 Thi 34.2 1.6E+02 0.0034 20.3 6.9 15 212-226 110-124 (125)
291 TIGR02171 Fb_sc_TIGR02171 Fibr 34.1 2.6E+02 0.0057 28.0 8.5 42 110-151 786-831 (912)
292 cd08353 Glo_EDI_BRP_like_7 Thi 33.9 1.8E+02 0.0039 20.9 6.3 16 211-226 124-139 (142)
293 cd08344 MhqB_like_N N-terminal 32.9 1.7E+02 0.0036 20.2 6.4 18 212-229 93-110 (112)
294 COG1512 Beta-propeller domains 32.5 2.2E+02 0.0047 24.2 6.9 38 125-168 46-84 (271)
295 KOG1615 Phosphoserine phosphat 31.9 1.1E+02 0.0023 24.8 4.7 39 128-175 91-129 (227)
296 PRK13265 glycine/sarcosine/bet 31.9 56 0.0012 24.6 2.9 35 113-147 34-75 (154)
297 PRK05778 2-oxoglutarate ferred 31.8 52 0.0011 28.3 3.2 22 117-139 18-39 (301)
298 COG3769 Predicted hydrolase (H 31.7 1.5E+02 0.0033 24.5 5.5 37 133-178 31-68 (274)
299 PF01976 DUF116: Protein of un 31.6 2.4E+02 0.0052 21.7 7.1 23 213-239 135-157 (158)
300 PRK08132 FAD-dependent oxidore 31.4 4.3E+02 0.0093 24.5 9.8 35 82-117 427-462 (547)
301 PF02670 DXP_reductoisom: 1-de 30.8 1E+02 0.0022 22.9 4.2 39 132-179 16-54 (129)
302 PF14307 Glyco_tran_WbsX: Glyc 30.7 95 0.0021 27.1 4.7 43 107-149 157-199 (345)
303 cd03063 TRX_Fd_FDH_beta TRX-li 30.7 1.3E+02 0.0027 21.0 4.4 30 211-243 49-78 (92)
304 COG0821 gcpE 1-hydroxy-2-methy 30.6 1E+02 0.0022 27.0 4.6 82 120-245 264-353 (361)
305 PF12017 Tnp_P_element: Transp 30.2 2.3E+02 0.0049 23.5 6.6 25 127-151 195-219 (236)
306 PRK10887 glmM phosphoglucosami 30.0 3E+02 0.0066 24.9 8.0 39 141-180 195-238 (443)
307 PF13743 Thioredoxin_5: Thiore 29.9 54 0.0012 25.6 2.8 33 114-147 2-34 (176)
308 PF03960 ArsC: ArsC family; I 29.4 1E+02 0.0022 21.8 4.0 50 115-176 1-50 (110)
309 PF11303 DUF3105: Protein of u 29.2 2.3E+02 0.0049 21.1 5.8 23 115-138 54-76 (130)
310 PF01295 Adenylate_cycl: Adeny 28.5 2.1E+02 0.0045 27.3 6.8 33 211-243 529-561 (604)
311 COG2761 FrnE Predicted dithiol 28.2 2E+02 0.0044 23.6 5.8 63 109-172 4-68 (225)
312 TIGR02177 PorB_KorB 2-oxoacid: 28.0 67 0.0015 27.4 3.2 14 231-244 161-174 (287)
313 PLN02640 glucose-6-phosphate 1 27.9 2.5E+02 0.0053 26.6 7.0 67 84-150 61-130 (573)
314 PRK04101 fosfomycin resistance 27.5 1.7E+02 0.0036 21.3 5.0 22 211-232 102-123 (139)
315 PRK14324 glmM phosphoglucosami 27.3 3.4E+02 0.0073 24.6 7.9 42 140-182 198-244 (446)
316 PF08918 PhoQ_Sensor: PhoQ Sen 26.9 31 0.00067 26.8 0.9 26 211-239 74-100 (180)
317 cd03060 GST_N_Omega_like GST_N 26.7 61 0.0013 20.6 2.2 31 114-149 3-33 (71)
318 PRK11478 putative lyase; Provi 26.7 2.3E+02 0.005 19.8 6.6 16 211-226 112-127 (129)
319 PF07449 HyaE: Hydrogenase-1 e 26.6 1.1E+02 0.0025 21.9 3.7 21 211-232 84-104 (107)
320 COG2607 Predicted ATPase (AAA+ 26.1 2.1E+02 0.0045 24.1 5.5 79 130-219 102-180 (287)
321 COG0300 DltE Short-chain dehyd 26.1 2.5E+02 0.0055 23.7 6.3 17 133-149 22-38 (265)
322 COG0278 Glutaredoxin-related p 25.8 2.5E+02 0.0054 20.0 6.1 55 107-178 13-72 (105)
323 PF12681 Glyoxalase_2: Glyoxal 25.3 2E+02 0.0043 19.3 4.9 15 211-225 93-107 (108)
324 cd03069 PDI_b_ERp57 PDIb famil 25.1 2.4E+02 0.0052 19.6 5.5 21 219-241 82-102 (104)
325 KOG0780 Signal recognition par 25.0 5.3E+02 0.011 23.4 8.4 67 97-174 88-158 (483)
326 PF11760 CbiG_N: Cobalamin syn 24.8 1.5E+02 0.0033 20.2 3.9 34 211-244 39-74 (84)
327 cd08348 BphC2-C3-RGP6_C_like T 24.6 2.6E+02 0.0056 19.8 7.4 19 211-229 103-121 (134)
328 COG1535 EntB Isochorismate hyd 24.5 1.2E+02 0.0025 24.2 3.6 36 113-148 43-78 (218)
329 PF14062 DUF4253: Domain of un 24.4 1.4E+02 0.003 21.5 3.9 51 119-172 25-78 (111)
330 PF13798 PCYCGC: Protein of un 24.2 1.1E+02 0.0024 23.6 3.4 44 110-173 104-147 (158)
331 PF07912 ERp29_N: ERp29, N-ter 24.1 3E+02 0.0066 20.4 8.6 31 211-241 85-117 (126)
332 cd07255 Glo_EDI_BRP_like_12 Th 24.0 2.5E+02 0.0055 19.4 6.6 17 211-227 102-118 (125)
333 PRK14315 glmM phosphoglucosami 23.5 4.6E+02 0.01 23.7 8.0 41 140-181 199-244 (448)
334 KOG0984 Mitogen-activated prot 23.4 1.5E+02 0.0033 24.4 4.2 32 110-141 105-142 (282)
335 cd05802 GlmM GlmM is a bacteri 23.3 4.3E+02 0.0094 23.7 7.8 39 141-180 193-236 (434)
336 PF14427 Pput2613-deam: Pput_2 23.2 1.2E+02 0.0025 22.0 3.1 29 101-129 59-87 (118)
337 COG0541 Ffh Signal recognition 23.2 5.9E+02 0.013 23.3 9.3 63 107-178 97-159 (451)
338 PF09419 PGP_phosphatase: Mito 23.1 3.7E+02 0.0079 21.0 6.3 63 87-149 17-85 (168)
339 PF03544 TonB_C: Gram-negative 23.1 36 0.00078 22.1 0.6 15 211-225 19-33 (79)
340 COG0561 Cof Predicted hydrolas 23.0 4.2E+02 0.0091 21.6 10.3 59 111-178 6-64 (264)
341 COG1129 MglA ABC-type sugar tr 23.0 6.2E+02 0.014 23.6 9.0 59 89-149 139-203 (500)
342 PF03259 Robl_LC7: Roadblock/L 22.9 1E+02 0.0022 20.4 2.9 15 211-225 16-30 (91)
343 TIGR01352 tonB_Cterm TonB fami 22.8 1.1E+02 0.0024 19.4 2.9 15 211-225 13-27 (74)
344 PF10790 DUF2604: Protein of U 22.8 76 0.0017 20.5 1.9 24 82-105 30-53 (76)
345 TIGR01488 HAD-SF-IB Haloacid D 22.8 3.3E+02 0.0072 20.4 7.8 37 128-173 76-112 (177)
346 PF08282 Hydrolase_3: haloacid 22.7 3.8E+02 0.0083 21.0 8.4 77 122-243 16-92 (254)
347 PRK09267 flavodoxin FldA; Vali 22.6 2.4E+02 0.0052 21.4 5.2 13 231-243 152-164 (169)
348 PF12690 BsuPI: Intracellular 22.4 85 0.0018 21.2 2.3 18 212-229 27-44 (82)
349 PF09547 Spore_IV_A: Stage IV 22.2 2.7E+02 0.0059 25.5 5.9 60 107-177 179-238 (492)
350 PRK14316 glmM phosphoglucosami 22.2 4.9E+02 0.011 23.5 7.9 39 141-180 197-240 (448)
351 PRK05370 argininosuccinate syn 21.9 1.9E+02 0.0042 26.4 5.0 61 102-174 4-66 (447)
352 KOG2961 Predicted hydrolase (H 21.9 3.9E+02 0.0084 20.8 7.0 100 88-194 22-129 (190)
353 COG2326 Uncharacterized conser 21.9 2.7E+02 0.0058 23.5 5.4 40 107-149 71-110 (270)
354 cd03084 phosphohexomutase The 21.7 3.8E+02 0.0081 23.3 6.9 39 141-180 136-182 (355)
355 PF10813 DUF2733: Protein of u 21.6 50 0.0011 18.1 0.8 14 92-105 14-27 (32)
356 PRK14323 glmM phosphoglucosami 21.5 4.7E+02 0.01 23.6 7.6 40 140-180 196-240 (440)
357 PRK10144 formate-dependent nit 21.4 2.2E+02 0.0047 21.2 4.4 16 158-173 74-89 (126)
358 PRK10200 putative racemase; Pr 21.4 2E+02 0.0042 23.5 4.7 45 125-179 59-103 (230)
359 KOG1422 Intracellular Cl- chan 21.3 3.7E+02 0.0081 21.9 6.0 37 119-167 20-56 (221)
360 PF14903 WG_beta_rep: WG conta 21.2 64 0.0014 17.1 1.3 10 215-224 3-12 (35)
361 cd05803 PGM_like4 This PGM-lik 21.2 6.1E+02 0.013 22.9 8.3 11 213-223 247-257 (445)
362 PRK11867 2-oxoglutarate ferred 21.1 76 0.0016 27.1 2.3 21 117-138 17-37 (286)
363 TIGR01662 HAD-SF-IIIA HAD-supe 21.1 3.1E+02 0.0067 19.6 5.4 46 127-175 27-74 (132)
364 PF15092 UPF0728: Uncharacteri 21.1 2.9E+02 0.0063 19.0 5.0 41 110-150 6-47 (88)
365 PF00875 DNA_photolyase: DNA p 21.1 1.9E+02 0.0041 21.9 4.3 43 126-177 51-93 (165)
366 cd08364 FosX FosX, a fosfomyci 20.9 2.8E+02 0.006 19.9 5.1 19 211-229 105-123 (131)
367 TIGR03147 cyt_nit_nrfF cytochr 20.3 2.3E+02 0.0051 21.0 4.4 16 158-173 74-89 (126)
368 TIGR01455 glmM phosphoglucosam 20.1 5.8E+02 0.012 23.0 7.9 38 141-179 196-238 (443)
369 PRK15175 Vi polysaccharide exp 20.1 1.2E+02 0.0026 26.8 3.3 32 213-244 104-140 (355)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=1.9e-43 Score=288.87 Aligned_cols=233 Identities=77% Similarity=1.174 Sum_probs=206.5
Q ss_pred CCC-ccccccCCccccccccCCCcchhccccccCCCCCccccccCCCCCCcccCCccccCCCCCCccccccccccccccc
Q 026011 5 SMP-FSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAA 83 (245)
Q Consensus 5 ~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (245)
||+ ++++++++.+.+...+++|. .+++ +|+.+++.++++++++++++++++++.+++...+|.+.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PLN02399 3 SLTTSSSSYASFKTVFNSSPPPPS------MAFL--VPSLKSSTGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYARAA 74 (236)
T ss_pred ccccccccccccccccccCCCCCc------cccc--cceeeeccccccchhhccccccccCCCccccccccccccccchh
Confidence 344 55677888888887665555 2244 89999999999999999999999999999999999999888889
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~ 163 (245)
.|+.+|+|+++|.+|+.++|++++||++||+||++||++|..++|+|++++++|+++|++||+|++|++...+.++.+++
T Consensus 75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777777788999
Q ss_pred HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
++|+.++++++||++.+.|.+|..+.+.|++++...++..++.+.++|++||||++|+|++++.|..+++++++.|+++|
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 99986689999999977777787888999987665565555567888999999999999999999999999999999999
Q ss_pred hC
Q 026011 244 VA 245 (245)
Q Consensus 244 ~~ 245 (245)
++
T Consensus 235 ~~ 236 (236)
T PLN02399 235 AA 236 (236)
T ss_pred cC
Confidence 75
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=1.8e-32 Score=215.11 Aligned_cols=161 Identities=73% Similarity=1.225 Sum_probs=143.4
Q ss_pred cCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011 85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (245)
Q Consensus 85 g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~ 164 (245)
...+|+|+++|.+|+.++|++++||++||+||++||+.|..+++.|++++++|+++|++||+|++|++...+.++.+++.
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999977666666777777
Q ss_pred HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
++..++++++||++.+.|.++....+.|+++....++..+..+.++|++||||++|+|++++.|..+++++++.|+++|+
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 76558899999999877777777899999887766665555677889999999999999999999999999999999987
Q ss_pred C
Q 026011 245 A 245 (245)
Q Consensus 245 ~ 245 (245)
+
T Consensus 166 ~ 166 (167)
T PLN02412 166 Q 166 (167)
T ss_pred h
Confidence 4
No 3
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=8.2e-32 Score=216.77 Aligned_cols=162 Identities=40% Similarity=0.766 Sum_probs=141.4
Q ss_pred ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~ 161 (245)
...+..+|+|+++|.+|+.++|++++||++||+||++||++|..++|.|++++++|+++|++||+|++|++..++.++.+
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999988777778899
Q ss_pred HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCC---C--CccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011 162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL---G--DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (245)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~---~--~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~ 236 (245)
++++|+ ++++++||++.|.+.+|....+++++++....... + ..+.+.|++||||++|+|++++.|..++++++
T Consensus 93 ~~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~ 171 (199)
T PTZ00056 93 DIRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELE 171 (199)
T ss_pred HHHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHH
Confidence 999999 89999999998877888777888877653322111 1 12556678999999999999999999999999
Q ss_pred HHHHHHhh
Q 026011 237 KDIQKLVV 244 (245)
Q Consensus 237 ~~l~~ll~ 244 (245)
+.|+++|+
T Consensus 172 ~~I~~ll~ 179 (199)
T PTZ00056 172 KKIAELLG 179 (199)
T ss_pred HHHHHHHH
Confidence 99999886
No 4
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.98 E-value=2.3e-31 Score=210.40 Aligned_cols=159 Identities=45% Similarity=0.840 Sum_probs=144.3
Q ss_pred CcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (245)
Q Consensus 86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~ 165 (245)
..+++|+++|++|+.++|++++||++||.|||+||+.|. +++.|++++++|+++|++||+|++|+|+.+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 368999999999999999999999999999999999996 7999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCC--------------------CCCCccccceeEEEECCCCcEEEe
Q 026011 166 FACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG--------------------FLGDLVKWNFEKFLVDKNGKVIER 225 (245)
Q Consensus 166 ~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~P~~~liD~~G~i~~~ 225 (245)
|+.++++++||++.+.|.+|....++|++++...+. ..+..|.|+.+.||||++|+++.+
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 995479999999999999999999999999865541 112369999999999999999999
Q ss_pred cCCCCChHH--HHHHHHHHhhC
Q 026011 226 YPPTTSPFQ--IEKDIQKLVVA 245 (245)
Q Consensus 226 ~~g~~~~~~--l~~~l~~ll~~ 245 (245)
|.+...+++ +++.|+++|++
T Consensus 162 ~~~~~~p~~~~i~~~i~~~l~~ 183 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLALAK 183 (183)
T ss_pred ECCCCCCCHHHHHHHHHHHhcC
Confidence 999888876 99999998853
No 5
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.97 E-value=1.8e-30 Score=201.02 Aligned_cols=150 Identities=62% Similarity=1.131 Sum_probs=124.6
Q ss_pred ccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 88 ~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
+|+|+++|.+|+.++|++++||+|||+||++||+ |..++|.|++++++|+++|++||+|++|++...+.++.+++++|+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 7999999999999999999999999999999999 999999999999999999999999999866555567788999999
Q ss_pred HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
.++++++||++.|.|.++......|+++.....+..+..+.+.+++||||++|+|++++.|..+.+++++.
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 33489999999776656665677777644333221123356667999999999999999999988877654
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.97 E-value=3.9e-30 Score=204.88 Aligned_cols=162 Identities=47% Similarity=0.856 Sum_probs=136.5
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCCCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~ 162 (245)
.+..+|+|+++|.+|+.++|++++||++ |+.+|++|||+|..++|.|++++++|+++|++||+|++|++..+++++.++
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 3567999999999999999999999964 566799999999999999999999999999999999998766666667788
Q ss_pred HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCC--CCccccce---eEEEECCCCcEEEecCCCCChHHHHH
Q 026011 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL--GDLVKWNF---EKFLVDKNGKVIERYPPTTSPFQIEK 237 (245)
Q Consensus 163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~--~~~i~~~P---~~~liD~~G~i~~~~~g~~~~~~l~~ 237 (245)
+.+|+.++++++||++.|.+.++....++|+++....+... ...+..+| ++||||++|+|++++.|..+.+++++
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~ 175 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ 175 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence 99998568899999998877787777889988776554211 11244446 57999999999999999999999999
Q ss_pred HHHHHhhC
Q 026011 238 DIQKLVVA 245 (245)
Q Consensus 238 ~l~~ll~~ 245 (245)
.|+++|++
T Consensus 176 ~I~~ll~~ 183 (183)
T PTZ00256 176 DIEKLLNA 183 (183)
T ss_pred HHHHHhcC
Confidence 99999874
No 7
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-30 Score=191.62 Aligned_cols=158 Identities=57% Similarity=1.071 Sum_probs=150.9
Q ss_pred cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHH
Q 026011 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF 166 (245)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~ 166 (245)
.+.||++++++|++++|++|+||++||.-.|+.|+..+ +...|+.||++|+++|++|+++.+++|.++++++.+++++|
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence 57799999999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceeeccCCCCCCcchhhhhhhcccCC-CCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011 167 ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 245 (245)
Q Consensus 167 ~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 245 (245)
+...|+.+||++...+++|...+++|+++.....+ ..+..|.|+.+.||||+||+|+.||.....|++++..|+++|++
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 99999999999999999999999999999988876 55678999999999999999999999999999999999999874
No 8
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=1.2e-29 Score=196.66 Aligned_cols=152 Identities=42% Similarity=0.798 Sum_probs=128.8
Q ss_pred ccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 88 ~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
+.+|+++|.+|++++|++++||++||+||++|||+|..++|.|++++++|+++|++|++|++++++..+.++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998877777678899999999
Q ss_pred HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
.++++++||++.|.+..+......|+++....++. ..++.++||||++|+|++++.|..+.+++++.|+++|
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~----p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKE----PRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCC----CCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 43489999999876666666677777654322211 1222349999999999999999999999999998875
No 9
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.6e-29 Score=187.40 Aligned_cols=162 Identities=65% Similarity=1.130 Sum_probs=155.9
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~ 163 (245)
....+.||+++|++|+.++|+.|+||++||.-.|+.|+.......+|++++++|+++|++|++..++||+.+|+.+.+++
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
.++++.+++..||++...|++|....++|++++...++.+++.|.|+.+.||||+||+++.||....++.+++.+|+++|
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC
Q 026011 244 VA 245 (245)
Q Consensus 244 ~~ 245 (245)
++
T Consensus 170 ~~ 171 (171)
T KOG1651|consen 170 AQ 171 (171)
T ss_pred cC
Confidence 64
No 10
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.2e-27 Score=178.26 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=122.5
Q ss_pred cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
.+.+|+++|||+|++.+|+.++|++++||+|||+|| ..++|.|..++..|++.+++|++.|.+|||||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 467999999999999999999999999999999888 8999999999999999999999999999999988 9
Q ss_pred hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---ChHHHH
Q 026011 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---SPFQIE 236 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---~~~~l~ 236 (245)
.+.+++|+ ++++++||+++|.+ ..+.+.|+++....... +.-....+.+||||++|+|++.+.... +.+++.
T Consensus 75 ~~~~~~F~-~k~~L~f~LLSD~~---~~v~~~ygv~~~k~~~g-k~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl 149 (157)
T COG1225 75 PKSHKKFA-EKHGLTFPLLSDED---GEVAEAYGVWGEKKMYG-KEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVL 149 (157)
T ss_pred HHHHHHHH-HHhCCCceeeECCc---HHHHHHhCcccccccCc-cccccccceEEEECCCCeEEEEecCCCCcccHHHHH
Confidence 99999999 99999999997755 44788888766432200 000223389999999999999984433 344555
Q ss_pred HHHHHH
Q 026011 237 KDIQKL 242 (245)
Q Consensus 237 ~~l~~l 242 (245)
+.|+++
T Consensus 150 ~~l~~l 155 (157)
T COG1225 150 AALKKL 155 (157)
T ss_pred HHHHHh
Confidence 555554
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.94 E-value=2e-26 Score=177.02 Aligned_cols=133 Identities=31% Similarity=0.490 Sum_probs=105.8
Q ss_pred cccCcccCeEEEc--CCCCeeecCCCCCCEEEEEEecC-CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 83 ATEKSLYDFTVKD--IDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 83 ~~g~~~pdf~l~~--~~G~~v~l~~~~gk~vll~F~~t-~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
++|+++|+|++++ .+|++++|++++||++||+||++ |||+|..++|.|++++++++++|+++|+|+.+ +
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~ 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------D 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------S
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------C
Confidence 4799999999966 99999999999999999999999 99999999999999999999999999999988 4
Q ss_pred hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 026011 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS 231 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~ 231 (245)
...+.+|+ ++++.+||++.|.+ ..+.+.|+.......+ .+ ..+|+++|||++|+|++++.|..+
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~-~~---~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 73 DPPVREFL-KKYGINFPVLSDPD---GALAKALGVTIMEDPG-NG---FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp SHHHHHHH-HHTTTTSEEEEETT---SHHHHHTTCEEECCTT-TT---SSSSEEEEEETTSBEEEEEESSBT
T ss_pred CHHHHHHH-HhhCCCceEEechH---HHHHHHhCCccccccc-cC---CeecEEEEEECCCEEEEEEeCCCC
Confidence 44489998 77899999996632 3344445421000000 00 145999999999999999988776
No 12
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.93 E-value=3.5e-25 Score=171.63 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=115.3
Q ss_pred cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecC-CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t-~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
.+..|+.+|+|+++|.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++|+++|+|+.| +
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~ 74 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------K 74 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence 45689999999999999999999999999999999976 78899999999999999999999999999987 7
Q ss_pred hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
.+++++|+ ++++.+||++.|.+ ..+.+.|+..........++... .|++||||++|+|++.+.|....+.+.+.+
T Consensus 75 ~~~~~~~~-~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~~~~~~~~-~~~~~lid~~G~i~~~~~g~~~~~~~~~~~ 149 (154)
T PRK09437 75 PEKLSRFA-EKELLNFTLLSDED---HQVAEQFGVWGEKKFMGKTYDGI-HRISFLIDADGKIEHVFDKFKTSNHHDVVL 149 (154)
T ss_pred HHHHHHHH-HHhCCCCeEEECCC---chHHHHhCCCcccccccccccCc-ceEEEEECCCCEEEEEEcCCCcchhHHHHH
Confidence 89999999 78899999996533 33555565432111000000001 178899999999999999876666655544
Q ss_pred H
Q 026011 240 Q 240 (245)
Q Consensus 240 ~ 240 (245)
+
T Consensus 150 ~ 150 (154)
T PRK09437 150 D 150 (154)
T ss_pred H
Confidence 3
No 13
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=1.2e-25 Score=179.33 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=111.5
Q ss_pred ccccCcccCeEEEcCCC--CeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011 82 AATEKSLYDFTVKDIDG--KDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G--~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~ 158 (245)
...|.++|+|+++|++| +.++++++ +||++||+||++||++|+.++|.|+++++ +|++||+|+.| +
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~ 107 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------D 107 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence 45799999999999984 67777665 89999999999999999999999988754 47999999986 3
Q ss_pred ChHHHHHHHHHhcCCCcce-eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011 159 SNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK 237 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~-~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~ 237 (245)
+.+++++|+ ++++.+||+ +.| ..+ .+...|+ +..+|++||||++|+|++++.|..+.+++++
T Consensus 108 ~~~~~~~~~-~~~~~~~~~~~~D--~~~-~~~~~~g-------------v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~ 170 (185)
T PRK15412 108 DRQKAISWL-KELGNPYALSLFD--GDG-MLGLDLG-------------VYGAPETFLIDGNGIIRYRHAGDLNPRVWES 170 (185)
T ss_pred CHHHHHHHH-HHcCCCCceEEEc--CCc-cHHHhcC-------------CCcCCeEEEECCCceEEEEEecCCCHHHHHH
Confidence 678899999 888999985 533 222 2333343 5566999999999999999999999999999
Q ss_pred HHHHHhh
Q 026011 238 DIQKLVV 244 (245)
Q Consensus 238 ~l~~ll~ 244 (245)
.|+.+++
T Consensus 171 ~i~~~~~ 177 (185)
T PRK15412 171 EIKPLWE 177 (185)
T ss_pred HHHHHHH
Confidence 9998875
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.93 E-value=2.1e-25 Score=166.35 Aligned_cols=123 Identities=28% Similarity=0.485 Sum_probs=105.5
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecC-CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t-~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~ 162 (245)
+|+++|+|++++.+|+.++|++++||++||.||.+ ||+.|..+++.|++++++++++|+++++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 58999999999999999999999999999999988 99999999999999999999999999999988 7889
Q ss_pred HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe
Q 026011 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (245)
Q Consensus 163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~ 225 (245)
+++|. ++++.+||++.|.+ ..+.+.|+..... .....|.+||||++|+|+++
T Consensus 73 ~~~~~-~~~~~~~~~~~D~~---~~~~~~~~~~~~~-------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVLSDPD---GELAKAFGIEDEK-------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHH-HHHTCSSEEEEETT---SHHHHHTTCEETT-------TSEESEEEEEEETTSBEEEE
T ss_pred hhhhh-hhhccccccccCcc---hHHHHHcCCcccc-------CCceEeEEEEECCCCEEEeC
Confidence 99999 88899999997633 4455555532211 02245999999999999874
No 15
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.92 E-value=5e-25 Score=167.81 Aligned_cols=138 Identities=22% Similarity=0.384 Sum_probs=114.4
Q ss_pred CcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (245)
Q Consensus 86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~ 164 (245)
+.+|+|+++|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++.++|+++|+|+.| +.+.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 6899999999999999999999999999999987 788999
Q ss_pred HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
+|+ ++++++||++.|.+ ..+.+.|+......++. ....|++||||++|+|++.+.|....+.+.+.+
T Consensus 73 ~~~-~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~~----~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFA-EKYGLPFPLLSDPD---GKLAKAYGVWGEKKKKY----MGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHH-HHhCCCceEEECCc---cHHHHHhCCcccccccc----CCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 999 78899999996644 34556666433221111 122389999999999999999988777777665
No 16
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=9.5e-25 Score=168.08 Aligned_cols=131 Identities=21% Similarity=0.363 Sum_probs=107.8
Q ss_pred cccCcccCeEEEcCCCCeeecCCCCC-CEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011 83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (245)
Q Consensus 83 ~~g~~~pdf~l~~~~G~~v~l~~~~g-k~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~ 160 (245)
.+|+.+|+|++.+.+|+.+++++++| |++||.|| ++||+.|..+++.|++++++++++|+++|+|+.| +.
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 57999999999999999999999999 99888887 9999999999999999999999989999999987 77
Q ss_pred HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~ 230 (245)
+.+++|+ ++++++||++.|.+.. ..+...|+......+ + +.|++||||++|+|++.+.|..
T Consensus 74 ~~~~~~~-~~~~~~~~~~~D~~~~-~~~~~~~g~~~~~~~------~-~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 74 FSLRAWA-EENGLTFPLLSDFWPH-GEVAKAYGVFDEDLG------V-AERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHH-HhcCCCceEecCCCch-hHHHHHhCCccccCC------C-ccceEEEECCCCEEEEEEecCC
Confidence 8899999 7889999999654322 234445553221110 1 2368999999999999998865
No 17
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.92 E-value=2e-24 Score=170.34 Aligned_cols=143 Identities=23% Similarity=0.394 Sum_probs=117.9
Q ss_pred cCcccCeEEEcCCCCeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011 85 EKSLYDFTVKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (245)
Q Consensus 85 g~~~pdf~l~~~~G~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~ 163 (245)
|..+|+|++++.+|+.++++++ +||++||+||++|||.|..+++.|++++++++++++++|+|++|.......++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 5789999999999999999998 999999999999999999999999999999998889999999984322233578999
Q ss_pred HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC---------CCCChHH
Q 026011 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP---------PTTSPFQ 234 (245)
Q Consensus 164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~---------g~~~~~~ 234 (245)
++|+ ++++++||++.|.+ ..+.+.|+ +.+.|.+||||++|+|++... +..+.++
T Consensus 81 ~~~~-~~~~~~~~~l~D~~---~~~~~~~~-------------v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKA-KEHGYPFPYLLDET---QEVAKAYG-------------AACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHH-HHCCCCceEEECCc---hHHHHHcC-------------CCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 9999 78899999996543 23344444 455699999999999997741 1234578
Q ss_pred HHHHHHHHhh
Q 026011 235 IEKDIQKLVV 244 (245)
Q Consensus 235 l~~~l~~ll~ 244 (245)
+.+.|+.+|.
T Consensus 144 ~~~~i~~~l~ 153 (171)
T cd02969 144 LRAALDALLA 153 (171)
T ss_pred HHHHHHHHHc
Confidence 9999998875
No 18
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=2.4e-24 Score=169.85 Aligned_cols=139 Identities=26% Similarity=0.445 Sum_probs=121.4
Q ss_pred ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
..+..|..+|+|++.+.+|+.+++++++||+++|+||++||+.|+.+++.|+++++++++.++++++|++| ++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d-------~~ 105 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD-------ET 105 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC-------CC
Confidence 44668999999999999999999999999999999999999999999999999999999888999999998 36
Q ss_pred hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
.+.+.+|+ ++++.+||++.|.+ ..+.+.|+ +.+.|++|+||++|+++..+.|..+.+++.+.+
T Consensus 106 ~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 106 ELAVKNFV-NRYGLTFPVAIDKG---RQVIDAYG-------------VGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred HHHHHHHH-HHhCCCceEEECCc---chHHHHcC-------------CCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 78899999 88999999985432 33444444 566699999999999999999999999998888
Q ss_pred HHH
Q 026011 240 QKL 242 (245)
Q Consensus 240 ~~l 242 (245)
+++
T Consensus 169 ~~~ 171 (173)
T PRK03147 169 EKI 171 (173)
T ss_pred HHh
Confidence 765
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=3.9e-24 Score=167.91 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=110.8
Q ss_pred cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCC-CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~-C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
...+|+.+|+|+++|.+|+.++|++++||++||+||++| |++|..+++.|+++++++. |++|++||.| +
T Consensus 17 ~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~ 86 (167)
T PRK00522 17 LPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------L 86 (167)
T ss_pred CCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------C
Confidence 345899999999999999999999999999999999999 9999999999999999983 7999999988 6
Q ss_pred hHHHHHHHHHhcCCC-cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC--CChHHHH
Q 026011 160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--TSPFQIE 236 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~--~~~~~l~ 236 (245)
.+.+++|+ ++++++ +++++|. .+..+.+.|+...... ...| + ..|++||||++|+|++.+.+. .+..+++
T Consensus 87 ~~~~~~f~-~~~~~~~~~~lsD~--~~~~~~~~~gv~~~~~-~~~g--~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~ 159 (167)
T PRK00522 87 PFAQKRFC-GAEGLENVITLSDF--RDHSFGKAYGVAIAEG-PLKG--L-LARAVFVLDENNKVVYSELVPEITNEPDYD 159 (167)
T ss_pred HHHHHHHH-HhCCCCCceEeecC--CccHHHHHhCCeeccc-ccCC--c-eeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 78889999 788887 6888542 3334566777543210 0011 1 237999999999999988533 2333444
Q ss_pred HHHHH
Q 026011 237 KDIQK 241 (245)
Q Consensus 237 ~~l~~ 241 (245)
+.|+.
T Consensus 160 ~~l~~ 164 (167)
T PRK00522 160 AALAA 164 (167)
T ss_pred HHHHH
Confidence 44443
No 20
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.92 E-value=2.3e-24 Score=170.21 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=110.6
Q ss_pred cccccCcccCeEEEcCCCC--eeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGK--DVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~--~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~ 157 (245)
...+|.++|+|+++|.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ +|+++|+|+.|
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~------- 101 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK------- 101 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 3468999999999999997 4554565 79999999999999999999999988764 46999999976
Q ss_pred CChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011 158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~ 237 (245)
++.++..+|+ ++++.+|+.+. .|.+ ..+...|+ +..+|++|+||++|+|++++.|..+.+++++
T Consensus 102 ~~~~~~~~~~-~~~~~~f~~v~-~D~~-~~~~~~~~-------------v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~ 165 (173)
T TIGR00385 102 DQSQNALKFL-KELGNPYQAIL-IDPN-GKLGLDLG-------------VYGAPETFLVDGNGVILYRHAGPLNNEVWTE 165 (173)
T ss_pred CChHHHHHHH-HHcCCCCceEE-ECCC-CchHHhcC-------------CeeCCeEEEEcCCceEEEEEeccCCHHHHHH
Confidence 3566778898 78888998431 2323 23444444 4445999999999999999999999999999
Q ss_pred HHHHHhhC
Q 026011 238 DIQKLVVA 245 (245)
Q Consensus 238 ~l~~ll~~ 245 (245)
.|++++++
T Consensus 166 ~l~~~~~~ 173 (173)
T TIGR00385 166 GFLPAMEK 173 (173)
T ss_pred HHHHHhhC
Confidence 99998853
No 21
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.92 E-value=6.4e-24 Score=167.72 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=110.4
Q ss_pred ccCcccCeEEEcCCC----CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011 84 TEKSLYDFTVKDIDG----KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G----~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~ 158 (245)
+|+.+|+|++++.+| +.++|++++||++||+|| ++||++|..+++.|++++++|.++|++|++||+|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 588999999999887 789999999999999999 8999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHh-------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC-
Q 026011 159 SNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT- 230 (245)
Q Consensus 159 ~~~~~~~~~~~~-------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~- 230 (245)
+.+..++|. +. .+++|+++.|.+ ..+.+.|+......+ . ..|++||||++|+|++.+.+..
T Consensus 73 ~~~~~~~~~-~~~~~~~~~~~~~f~~l~D~~---~~~~~~~gv~~~~~~----~---~~p~~~lID~~G~I~~~~~~~~~ 141 (173)
T cd03015 73 SHFSHLAWR-NTPRKEGGLGKINFPLLADPK---KKISRDYGVLDEEEG----V---ALRGTFIIDPEGIIRHITVNDLP 141 (173)
T ss_pred CHHHHHHHH-HhhhhhCCccCcceeEEECCc---hhHHHHhCCccccCC----c---eeeEEEEECCCCeEEEEEecCCC
Confidence 555666676 33 457899996543 445566664332211 1 2389999999999999985543
Q ss_pred ---ChHHHHHHHHHH
Q 026011 231 ---SPFQIEKDIQKL 242 (245)
Q Consensus 231 ---~~~~l~~~l~~l 242 (245)
+.+++.+.|+++
T Consensus 142 ~~~~~~~il~~l~~~ 156 (173)
T cd03015 142 VGRSVDETLRVLDAL 156 (173)
T ss_pred CCCCHHHHHHHHHHh
Confidence 445677776655
No 22
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=4.3e-24 Score=172.51 Aligned_cols=143 Identities=24% Similarity=0.342 Sum_probs=113.4
Q ss_pred ccccCcccCeEEEcCCCCeeecCCCCCCEEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~ 160 (245)
+.+|+.+|+|++.+.+| .++|++++||++|| +||++||++|..+++.|++++++|+++|++||+||+| +.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~ 72 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI 72 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence 45899999999999888 79999999997766 6889999999999999999999999999999999998 66
Q ss_pred HHHHHHHH---HhcC--CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec----CCCCC
Q 026011 161 PEIKEFAC---TRFK--AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY----PPTTS 231 (245)
Q Consensus 161 ~~~~~~~~---~~~~--~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~----~g~~~ 231 (245)
+.+.+|+. ++++ ++||++.|.+ ..+.+.|+.+....+ ...|.+||||++|+|++.. ....+
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~---~~ia~~ygv~~~~~g-------~~~p~~fiId~~G~I~~~~~~~~~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADID---KELAREYNLIDENSG-------ATVRGVFIIDPNQIVRWMIYYPAETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCC---hHHHHHcCCccccCC-------cEEeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 77666652 3454 5899997644 446677776443221 1249999999999999775 33347
Q ss_pred hHHHHHHHHHHh
Q 026011 232 PFQIEKDIQKLV 243 (245)
Q Consensus 232 ~~~l~~~l~~ll 243 (245)
.+++.+.|+.++
T Consensus 143 ~~ellr~l~~l~ 154 (202)
T PRK13190 143 IDEIIRITKALQ 154 (202)
T ss_pred HHHHHHHHHHhh
Confidence 778888887765
No 23
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.91 E-value=2.7e-24 Score=171.78 Aligned_cols=141 Identities=17% Similarity=0.241 Sum_probs=109.7
Q ss_pred cccCcccCeEEEc-CCCC--eeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011 83 ATEKSLYDFTVKD-IDGK--DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (245)
Q Consensus 83 ~~g~~~pdf~l~~-~~G~--~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~ 158 (245)
.+|+.+|+|++++ .+|+ .+++++++||++||+|| ++||++|..+++.|++++++|+++|++||+||.|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 4799999999999 5776 67888999999999999 9999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHh---cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----C
Q 026011 159 SNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----S 231 (245)
Q Consensus 159 ~~~~~~~~~~~~---~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----~ 231 (245)
+.+.+++|.... .+++||++.|.+ ..+.+.|+.+....+ .+.|++||||++|+|++.+.... +
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD~~---~~~a~~~gv~~~~~g-------~~~p~tfiID~~G~I~~~~~~~~~~~~~ 144 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGDPT---GVLTRNFGVLIEEAG-------LADRGTFVIDPEGVIQAVEITDNGIGRD 144 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEECCc---cHHHHHhCCcccCCC-------ceeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 667777776321 367899996643 446666765432111 12499999999999998875433 4
Q ss_pred hHHHHHHHHH
Q 026011 232 PFQIEKDIQK 241 (245)
Q Consensus 232 ~~~l~~~l~~ 241 (245)
.+++.+.|+.
T Consensus 145 ~~~ll~~l~~ 154 (187)
T TIGR03137 145 ASELLRKIKA 154 (187)
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 24
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.91 E-value=1.3e-23 Score=167.21 Aligned_cols=143 Identities=12% Similarity=0.238 Sum_probs=114.6
Q ss_pred ccccCcccCeEEEcC-CC--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011 82 AATEKSLYDFTVKDI-DG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~-~G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~ 157 (245)
+.+|.++|+|+.+.. +| .+++|++++||++||+|| ++||++|..+++.|++++++|.++|++||+||.|
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D------- 74 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD------- 74 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence 458999999999883 44 467888999999999999 9999999999999999999999999999999988
Q ss_pred CChHHHHHHHHHh---cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC----C
Q 026011 158 GSNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----T 230 (245)
Q Consensus 158 ~~~~~~~~~~~~~---~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~----~ 230 (245)
+.+.+++|..+. .+++||+++|.+ ..+.+.|+.+....+ + ..|.+||||++|+|++.+... .
T Consensus 75 -~~~~~~a~~~~~~~~~~l~fpllsD~~---~~ia~~ygv~~~~~g------~-~~r~tfIID~~G~I~~~~~~~~~~~~ 143 (187)
T PRK10382 75 -THFTHKAWHSSSETIAKIKYAMIGDPT---GALTRNFDNMREDEG------L-ADRATFVVDPQGIIQAIEVTAEGIGR 143 (187)
T ss_pred -CHHHHHHHHHhhccccCCceeEEEcCc---hHHHHHcCCCcccCC------c-eeeEEEEECCCCEEEEEEEeCCCCCC
Confidence 889999998432 478999997643 557778876543211 1 239999999999999887433 2
Q ss_pred ChHHHHHHHHHH
Q 026011 231 SPFQIEKDIQKL 242 (245)
Q Consensus 231 ~~~~l~~~l~~l 242 (245)
+.+++.+.|+.+
T Consensus 144 ~~~eil~~l~al 155 (187)
T PRK10382 144 DASDLLRKIKAA 155 (187)
T ss_pred CHHHHHHHHHhh
Confidence 566777777655
No 25
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.91 E-value=1.2e-23 Score=160.92 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=103.5
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCC-CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~-C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~ 162 (245)
+|+.+|+|++++.+|+.++|++++||++||+||++| |++|..+++.|++++++++ |+.||+|+.| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999988 6999999999999999984 6999999988 6778
Q ss_pred HHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011 163 IKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 163 ~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~ 229 (245)
+++|. ++++. .++++.|.+ .....+.|+.+....+ + ..|++||||++|+|++.+.|.
T Consensus 72 ~~~~~-~~~~~~~~~~l~D~~--~~~~~~~~gv~~~~~~------~-~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 72 QKRWC-GAEGVDNVTTLSDFR--DHSFGKAYGVLIKDLG------L-LARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred HHHHH-HhcCCCCceEeecCc--ccHHHHHhCCeeccCC------c-cceEEEEEcCCCeEEEEEECC
Confidence 89998 67775 789886542 1345566665432211 0 138999999999999998765
No 26
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.91 E-value=2.1e-23 Score=169.53 Aligned_cols=143 Identities=13% Similarity=0.170 Sum_probs=112.4
Q ss_pred cccCcccCeEEEcCCCCeeecCCCCCCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011 83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (245)
Q Consensus 83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~ 161 (245)
.+|+.+|+|++.+.+|+...+++++||++ |++||++|||+|..+++.|++++++|+++|++||+||+| +.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 48999999999999999888899999975 568889999999999999999999999999999999998 666
Q ss_pred HHHHHHH--H---hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC----CCh
Q 026011 162 EIKEFAC--T---RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----TSP 232 (245)
Q Consensus 162 ~~~~~~~--~---~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~----~~~ 232 (245)
.+.+|.. + .++++||++.|.+ ..+.+.|+.+....+ ....|++||||++|+|++.+... .+.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil~D~~---~~va~~yg~~~~~~~------~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~ 145 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVIADDL---GKVSNQLGMIHPGKG------TNTVRAVFIVDDKGTIRLIMYYPQEVGRNV 145 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEEECCC---chHHHHcCCCccCCC------CceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence 6666542 2 3578899996643 446777776533211 12349999999999999875321 256
Q ss_pred HHHHHHHHHH
Q 026011 233 FQIEKDIQKL 242 (245)
Q Consensus 233 ~~l~~~l~~l 242 (245)
+++.+.|+.+
T Consensus 146 ~eilr~l~~l 155 (215)
T PRK13599 146 DEILRALKAL 155 (215)
T ss_pred HHHHHHHHHh
Confidence 6777777765
No 27
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.90 E-value=8.2e-24 Score=158.67 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=101.6
Q ss_pred cccCeEEEcCCC--CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011 87 SLYDFTVKDIDG--KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (245)
Q Consensus 87 ~~pdf~l~~~~G--~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~ 164 (245)
++|+|++++++| +.+++++++||++||+||++||++|+.+++.|+++.+++ +++||+|+.| ++.+.++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHHH
Confidence 689999999999 889999999999999999999999999999999998775 4999999986 4788999
Q ss_pred HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHH
Q 026011 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI 235 (245)
Q Consensus 165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l 235 (245)
+|+ ++++++|+.+. .|.. ..+...|+ +..+|++|+||++|+|++++.|..+.+.+
T Consensus 72 ~~~-~~~~~~~~~~~-~D~~-~~~~~~~~-------------v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 72 AWL-ARHGNPYAAVG-FDPD-GRVGIDLG-------------VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHH-HhcCCCCceEE-ECCc-chHHHhcC-------------CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 998 78888886431 2322 23444444 45569999999999999999998877654
No 28
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.90 E-value=3.3e-23 Score=168.47 Aligned_cols=143 Identities=18% Similarity=0.284 Sum_probs=110.8
Q ss_pred ccccCcccCeEEEcCCCCeeec-CCCCCCEEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 82 AATEKSLYDFTVKDIDGKDVPL-SKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l-~~~~gk~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
+.+|+.+|+|++++.+|+ +.+ ++++||++|| +||++||++|..+++.|++++++|+++|++|++||+| +
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s 77 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------S 77 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------C
Confidence 458999999999999997 555 5589997666 7789999999999999999999999999999999998 6
Q ss_pred hHHHHHHHH--H---hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----
Q 026011 160 NPEIKEFAC--T---RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---- 230 (245)
Q Consensus 160 ~~~~~~~~~--~---~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---- 230 (245)
...+++|.. + .++++||+++|.+ ..+.+.|+.+.....+ ...|.+||||++|+|++.+.+..
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~---~~ia~~ygv~~~~~~~------~~~r~tfIID~~G~Ir~~~~~~~~~gr 148 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIADPM---GNVAKRLGMIHAESST------ATVRAVFIVDDKGTVRLILYYPMEIGR 148 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEECCc---hHHHHHcCCcccccCC------ceeEEEEEECCCCEEEEEEecCCCCCC
Confidence 676666542 2 3468899997644 5577778765432111 13499999999999998764332
Q ss_pred ChHHHHHHHHHH
Q 026011 231 SPFQIEKDIQKL 242 (245)
Q Consensus 231 ~~~~l~~~l~~l 242 (245)
+.+++.+.|+.+
T Consensus 149 ~~~eilr~l~al 160 (215)
T PRK13191 149 NIDEILRAIRAL 160 (215)
T ss_pred CHHHHHHHHHHh
Confidence 666777777665
No 29
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.90 E-value=2e-23 Score=159.37 Aligned_cols=137 Identities=22% Similarity=0.311 Sum_probs=107.1
Q ss_pred cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCC-ChHHHHHHHHHHHHhhhCC---cEEEEEecCCCCCCCCCChHH
Q 026011 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSNPE 162 (245)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~-C~~~~~~l~~l~~~~~~~g---~~vv~Vs~D~~~~~~~~~~~~ 162 (245)
.+|+|++.|.+|+.+++.+++||++||+||++||+. |..+++.|+++++++++++ +++++|+.| +..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d----~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD----PERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC----CCCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999998875 999999998 33357789
Q ss_pred HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccC-CCCCCccccceeEEEECCCCcEEEecCC
Q 026011 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (245)
Q Consensus 163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~~P~~~liD~~G~i~~~~~g 228 (245)
+++|+ ++++.+|+++.+.+.....+.+.|+....... ...++.+.|.|.+||||++|+|++.|.+
T Consensus 77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHH-HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 99999 78888999996532111234444553322111 1112336677999999999999998754
No 30
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=8.2e-23 Score=165.24 Aligned_cols=141 Identities=14% Similarity=0.220 Sum_probs=109.1
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCC-CEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKG-KVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~g-k~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~ 161 (245)
+|+.+|+|++.+.+| .+++++++| |++ |++||++|||+|..+++.|++++++|+++|++|++||+| +.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 488999999999988 589999998 655 557889999999999999999999999999999999998 667
Q ss_pred HHHHHHHHh------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----C
Q 026011 162 EIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----S 231 (245)
Q Consensus 162 ~~~~~~~~~------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----~ 231 (245)
.+++|. +. .+++||++.|.+ ..+.+.|+.+....+. + ...|.+||||++|+|++.+.+.. +
T Consensus 72 ~~~~~~-~~i~~~~~~~~~fpil~D~~---~~ia~~yg~~~~~~~~--~---~~~r~~fiID~~G~I~~~~~~~~~~gr~ 142 (203)
T cd03016 72 SHIKWI-EDIEEYTGVEIPFPIIADPD---REVAKLLGMIDPDAGS--T---LTVRAVFIIDPDKKIRLILYYPATTGRN 142 (203)
T ss_pred HHHHHH-hhHHHhcCCCCceeEEECch---HHHHHHcCCccccCCC--C---ceeeEEEEECCCCeEEEEEecCCCCCCC
Confidence 777766 32 688999997644 4466667654322110 0 12388999999999998875432 4
Q ss_pred hHHHHHHHHHH
Q 026011 232 PFQIEKDIQKL 242 (245)
Q Consensus 232 ~~~l~~~l~~l 242 (245)
.+++.+.|+.+
T Consensus 143 ~~ell~~l~~l 153 (203)
T cd03016 143 FDEILRVVDAL 153 (203)
T ss_pred HHHHHHHHHHH
Confidence 56777777665
No 31
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.89 E-value=2.6e-23 Score=155.81 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=94.0
Q ss_pred CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026011 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (245)
Q Consensus 98 G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (245)
|+.++|++++||++||+||++||++|..+++.|++++++++++|+++|+|+.+++. ..++.+++++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHH-HHcCCCCCE
Confidence 47899999999999999999999999999999999999999999999999875321 124788999999 899999999
Q ss_pred eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 178 ~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~ 229 (245)
+.|.+ ..+...|+ +.++|++||||++|+|++++.|.
T Consensus 90 ~~D~~---~~~~~~~~-------------v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 ANDND---YATWRAYG-------------NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EECCc---hHHHHHhC-------------CCcCCeEEEECCCCcEEEEEecC
Confidence 96533 22233333 55669999999999999998874
No 32
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.89 E-value=1.6e-22 Score=161.82 Aligned_cols=131 Identities=15% Similarity=0.194 Sum_probs=102.8
Q ss_pred ccccCcccCeEEEcCCCCeeecC--CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLS--KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~--~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
..+|+.+|+|+++|.+|+.+++. +++||++||+||++|||+|+.++|.++++++++ ++++++|+.| +
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------~ 114 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------T 114 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------C
Confidence 56899999999999999999995 579999999999999999999999999988653 5789999854 7
Q ss_pred hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
.+++++|+ ++++++++.+. . . .++.+.|+ +...|++||||++|+|+++.. ....+++++.+
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~-~--~-~~i~~~y~-------------v~~~P~~~lID~~G~I~~~g~-~~~~~~le~ll 175 (189)
T TIGR02661 115 PAEHRRFL-KDHELGGERYV-V--S-AEIGMAFQ-------------VGKIPYGVLLDQDGKIRAKGL-TNTREHLESLL 175 (189)
T ss_pred HHHHHHHH-HhcCCCcceee-c--h-hHHHHhcc-------------CCccceEEEECCCCeEEEccC-CCCHHHHHHHH
Confidence 88999999 78888876552 1 1 22334444 455699999999999988642 23445666666
Q ss_pred HHH
Q 026011 240 QKL 242 (245)
Q Consensus 240 ~~l 242 (245)
+.+
T Consensus 176 ~~l 178 (189)
T TIGR02661 176 EAD 178 (189)
T ss_pred HHH
Confidence 544
No 33
>PRK15000 peroxidase; Provisional
Probab=99.89 E-value=1.8e-22 Score=162.54 Aligned_cols=142 Identities=16% Similarity=0.244 Sum_probs=109.2
Q ss_pred cccCcccCeEEEcCC--CC---eeecCCC-CCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011 83 ATEKSLYDFTVKDID--GK---DVPLSKF-KGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ 155 (245)
Q Consensus 83 ~~g~~~pdf~l~~~~--G~---~v~l~~~-~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~ 155 (245)
.+|+.+|+|++++.. |+ .++|+++ +||++||+||. +||++|..+++.|++++++|+++|++||+||+|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 479999999999864 44 3456665 89999999997 599999999999999999999999999999998
Q ss_pred CCCChHHHHHHHH---HhcC---CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011 156 EPGSNPEIKEFAC---TRFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 156 ~~~~~~~~~~~~~---~~~~---~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~ 229 (245)
+.+.++.|.. ++.+ ++||+++|.+ ..+.+.|+.+....+ . ..|.+||||++|+|++.+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpllsD~~---~~ia~~ygv~~~~~g----~---~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVADVK---REIQKAYGIEHPDEG----V---ALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEEECCC---cHHHHHcCCccCCCC----c---EEeEEEEECCCCEEEEEEecC
Confidence 6777777652 2333 5899997644 456777775432221 1 249999999999999987664
Q ss_pred C----ChHHHHHHHHHH
Q 026011 230 T----SPFQIEKDIQKL 242 (245)
Q Consensus 230 ~----~~~~l~~~l~~l 242 (245)
. +.+++.+.|+.+
T Consensus 145 ~~~gr~~~eilr~l~al 161 (200)
T PRK15000 145 LPLGRNIDEMLRMVDAL 161 (200)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 4 555666666654
No 34
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.89 E-value=1.3e-22 Score=168.16 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=112.3
Q ss_pred cccccCcccCeEEEc-CCCC--eeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011 81 TAATEKSLYDFTVKD-IDGK--DVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ 155 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~-~~G~--~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~ 155 (245)
...+|+.+|+|++++ .+|+ +++|+++ +||++||+|| ++||++|..+++.|++++++|+++|++|++||+|
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D----- 141 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD----- 141 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 356999999999988 5664 6899998 8988888877 9999999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHH------hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011 156 EPGSNPEIKEFACT------RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 156 ~~~~~~~~~~~~~~------~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~ 229 (245)
+.+.+++|..+ ..+++||++.|.+ ..+.+.|+.+.. . | ...|++||||++|+|++.+...
T Consensus 142 ---s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~---~~iakayGv~~~-~----g---~a~R~tFIID~dG~I~~~~~~~ 207 (261)
T PTZ00137 142 ---SPFSHKAWKELDVRQGGVSPLKFPLFSDIS---REVSKSFGLLRD-E----G---FSHRASVLVDKAGVVKHVAVYD 207 (261)
T ss_pred ---CHHHHHHHHhhhhhhccccCcceEEEEcCC---hHHHHHcCCCCc-C----C---ceecEEEEECCCCEEEEEEEeC
Confidence 67777777632 2578899997643 456777775432 1 1 1249999999999999876322
Q ss_pred ----CChHHHHHHHHHH
Q 026011 230 ----TSPFQIEKDIQKL 242 (245)
Q Consensus 230 ----~~~~~l~~~l~~l 242 (245)
.+.+++.+.|+.+
T Consensus 208 ~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 208 LGLGRSVDETLRLFDAV 224 (261)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 2666777777655
No 35
>PRK13189 peroxiredoxin; Provisional
Probab=99.88 E-value=4.8e-22 Score=162.52 Aligned_cols=145 Identities=15% Similarity=0.252 Sum_probs=110.8
Q ss_pred cccccCcccCeEEEcCCCCeeecCC-CCCCEEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGKDVPLSK-FKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~-~~gk~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~ 158 (245)
.+.+|+.+|+|++++.+|+ +.+++ ++||++|| +||++||++|..+++.|++++++|+++|++||+||+|
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D-------- 78 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID-------- 78 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------
Confidence 3568999999999999985 67776 59996654 7789999999999999999999999999999999998
Q ss_pred ChHHHHHHHHH---h--cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---
Q 026011 159 SNPEIKEFACT---R--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--- 230 (245)
Q Consensus 159 ~~~~~~~~~~~---~--~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--- 230 (245)
+...+.+|..+ + .+++||++.|.+ ..+.+.|+.+....++ ...|++||||++|+|++...+..
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~---~~ia~~ygv~~~~~~~------~~~r~tfIID~~G~Ir~~~~~~~~~g 149 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDR---GEIAKKLGMISPGKGT------NTVRAVFIIDPKGIIRAILYYPQEVG 149 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCc---cHHHHHhCCCccccCC------CceeEEEEECCCCeEEEEEecCCCCC
Confidence 67777777632 1 357899997644 4567777754322111 13499999999999988764322
Q ss_pred -ChHHHHHHHHHHh
Q 026011 231 -SPFQIEKDIQKLV 243 (245)
Q Consensus 231 -~~~~l~~~l~~ll 243 (245)
+.+++.+.|+.+.
T Consensus 150 r~~~eilr~l~alq 163 (222)
T PRK13189 150 RNMDEILRLVKALQ 163 (222)
T ss_pred CCHHHHHHHHHHhh
Confidence 5667777776653
No 36
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.88 E-value=3e-22 Score=147.21 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=90.9
Q ss_pred cCeEEEcCCCCeeecCCCC-CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 89 YDFTVKDIDGKDVPLSKFK-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 89 pdf~l~~~~G~~v~l~~~~-gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
|+|++++.+|+.++|.+++ ||++||+||++||++|+.++|.++++++++.+ ++.++.|+ | ++.++.++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7999999999999999997 99999999999999999999999999988865 48888886 3 3678899999
Q ss_pred HHhcCCC-cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011 168 CTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (245)
Q Consensus 168 ~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~ 226 (245)
+++++. +|++.+ ..+...|+ +..+|++||||++|+|+++.
T Consensus 72 -~~~~~~~~p~~~~-----~~~~~~~~-------------~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 -KKHGLEAFPYVLS-----AELGMAYQ-------------VSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -HHhCCCCCcEEec-----HHHHhhcC-------------CCCcCeEEEECCCCeEEecc
Confidence 788884 888732 12333343 45569999999999997763
No 37
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.88 E-value=4.1e-22 Score=151.66 Aligned_cols=129 Identities=24% Similarity=0.341 Sum_probs=105.4
Q ss_pred cccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (245)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~ 165 (245)
.+|+|+++|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.|+++|+|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 479999999999999999999999999999 7899999999999999999998889999999987 7788999
Q ss_pred HHHHhc-CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 026011 166 FACTRF-KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS 231 (245)
Q Consensus 166 ~~~~~~-~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~ 231 (245)
|+ +++ +.+|+++.|.+ ..+.+.|+....... +. ....|++||||++|+|++++.|...
T Consensus 73 ~~-~~~~~~~~~~l~D~~---~~~~~~~g~~~~~~~---~~-~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WA-EKEGGLNFPLLSDPD---GEFAKAYGVLIEKSA---GG-GLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HH-hcccCCCceEEECCC---hHHHHHcCCcccccc---cc-CceeEEEEEECCCCcEEEEEecCCC
Confidence 99 777 88999996533 234555554332211 00 1124899999999999999988764
No 38
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.88 E-value=5.1e-22 Score=178.49 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=111.3
Q ss_pred ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~ 161 (245)
...++.+|+|++.|.+|+.+.++ +||+|||+||++||++|+.++|.|+++++++++++++||+|+++... ...+.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~--~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL--HEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc--ccccHH
Confidence 45677899999999999999987 89999999999999999999999999999998778999999985321 123456
Q ss_pred HHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011 162 EIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 162 ~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~ 240 (245)
++++|+ +..+. .+|++.| .+ ..+...|+ |..+|+++|||++|+|+.++.|..+.+++++.|+
T Consensus 108 ~~~~~~-~~~~y~~~pV~~D--~~-~~lak~fg-------------V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWY-AGLDYPKLPVLTD--NG-GTLAQSLN-------------ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHH-HhCCCcccceecc--cc-HHHHHHcC-------------CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 777777 44443 4677743 22 22333333 6677999999999999999999999999988887
Q ss_pred H
Q 026011 241 K 241 (245)
Q Consensus 241 ~ 241 (245)
.
T Consensus 171 ~ 171 (521)
T PRK14018 171 N 171 (521)
T ss_pred H
Confidence 3
No 39
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.88 E-value=4.1e-22 Score=160.75 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=108.3
Q ss_pred ccccCcccCeEEEc----CCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011 82 AATEKSLYDFTVKD----IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (245)
Q Consensus 82 ~~~g~~~pdf~l~~----~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~ 156 (245)
..+|+++|+|++.+ .+|++++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+||.|
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------ 79 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------ 79 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence 45899999999765 466899999999999999999 5899999999999999999999999999999998
Q ss_pred CCChHHHHHHHHH-h-----cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011 157 PGSNPEIKEFACT-R-----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (245)
Q Consensus 157 ~~~~~~~~~~~~~-~-----~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~ 230 (245)
+.....+|..+ + .+++||++.|.+ ..+.+.|+.+....+ + ..|.+||||++|+|++.+.+..
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~fpll~D~~---~~ia~~ygv~~~~~g------~-~~r~~fiID~~G~i~~~~~~~~ 147 (199)
T PTZ00253 80 --SEYAHLQWTLQERKKGGLGTMAIPMLADKT---KSIARSYGVLEEEQG------V-AYRGLFIIDPKGMLRQITVNDM 147 (199)
T ss_pred --CHHHHHHHHhChHhhCCccccccceEECcH---hHHHHHcCCcccCCC------c-eEEEEEEECCCCEEEEEEecCC
Confidence 56556665421 1 147899997644 556777776543221 1 2389999999999998875543
Q ss_pred ----ChHHHHHHHHH
Q 026011 231 ----SPFQIEKDIQK 241 (245)
Q Consensus 231 ----~~~~l~~~l~~ 241 (245)
+.+++.+.|+.
T Consensus 148 ~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 148 PVGRNVEEVLRLLEA 162 (199)
T ss_pred CCCCCHHHHHHHHHh
Confidence 33344444443
No 40
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.88 E-value=1.6e-22 Score=154.04 Aligned_cols=107 Identities=10% Similarity=0.141 Sum_probs=82.8
Q ss_pred CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-------CcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-------GFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (245)
Q Consensus 99 ~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-------g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~ 171 (245)
+.++|++++||+|+|+|||+||++|+.++|.|++++++++++ +++||+|+.| ++.+++++|+ +++
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~-~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFL-KDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHH-HHC
Confidence 346788999999999999999999999999999999988653 6999999988 3667789998 788
Q ss_pred CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011 172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (245)
Q Consensus 172 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~ 226 (245)
++.|+.+...+..+..+...|+ +..+|++||||++|+|+.+.
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~-------------v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFS-------------VEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCCceeecccchHHHHHHHHcC-------------CCCCCEEEEECCCCcEEeeC
Confidence 8776443222211122333333 55669999999999998774
No 41
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.87 E-value=7.4e-22 Score=147.05 Aligned_cols=121 Identities=18% Similarity=0.310 Sum_probs=103.3
Q ss_pred cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC 168 (245)
Q Consensus 89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~ 168 (245)
|+|++++++|+.+++.+++||+++|+||++||++|+.+++.|++++++ +++++|++| .++.+++.+|+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~------~~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALR------SGDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEcc------CCCHHHHHHHH-
Confidence 799999999999999999999999999999999999999999999876 678999887 34689999999
Q ss_pred HhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
++++++||++.|.+ ..+.+.|+ |.+.|+++|||++| +++++.|..+++++.+.
T Consensus 69 ~~~~~~~~~~~d~~---~~~~~~~~-------------i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 69 QKKGYGFPVINDPD---GVISARWG-------------VSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HHcCCCccEEECCC---cHHHHhCC-------------CCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 78899999985432 22344444 66679999999999 99999999999888765
No 42
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.87 E-value=7.5e-22 Score=151.60 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=98.9
Q ss_pred cccCeEEEcCCCCeeecCCCC-CCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011 87 SLYDFTVKDIDGKDVPLSKFK-GKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (245)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~-gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~ 164 (245)
.+|+|+++|.+|+.++++++. +|++ |++||++||++|+.+++.|+++++++.++|+++|+|+.| +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 479999999999999999875 4655 555569999999999999999999999999999999987 566777
Q ss_pred HHHHHhcCCCcceeeccCCCCCCcchhhhhhhccc-----------------CCCCCCccccceeEEEECCCCcEEEecC
Q 026011 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA-----------------GGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (245)
Q Consensus 165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~P~~~liD~~G~i~~~~~ 227 (245)
+|. ++++++||++.|.+ ..+.+.|+...... ++. +......|++||||++|+|++.+.
T Consensus 73 ~~~-~~~~~~~p~~~D~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 73 AFD-KGKFLPFPVYADPD---RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGND-EGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred HHH-HhcCCCCeEEECCc---hhHHHHcCceecCcHHHHHHHHhhCcccccccCC-CCcccccceEEEECCCCeEEEEec
Confidence 888 78899999996644 33445555422111 011 111234599999999999999887
Q ss_pred C
Q 026011 228 P 228 (245)
Q Consensus 228 g 228 (245)
|
T Consensus 148 ~ 148 (149)
T cd02970 148 D 148 (149)
T ss_pred C
Confidence 5
No 43
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.4e-21 Score=150.78 Aligned_cols=144 Identities=21% Similarity=0.314 Sum_probs=119.6
Q ss_pred ccccCcccCeEEEcC-CCC---eeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011 82 AATEKSLYDFTVKDI-DGK---DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~-~G~---~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~ 156 (245)
..+|+++|+|++... .|+ +++++++.||+++|+|| +++.++|+.++..++++|++|+++|++||+||+|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------ 76 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------ 76 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence 358999999999998 774 89999998999999999 9999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHH---hcC---CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011 157 PGSNPEIKEFACT---RFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (245)
Q Consensus 157 ~~~~~~~~~~~~~---~~~---~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~ 230 (245)
+...+.+|... ..+ ++||++.|.+ .++++.|+++..+.|.. .+.+||||++|+|++......
T Consensus 77 --s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~---~~vs~~ygvl~~~~g~a-------~R~~FIIDp~g~ir~~~v~~~ 144 (194)
T COG0450 77 --SVFSHKAWKATIREAGGIGKIKFPMIADPK---GEIARAYGVLHPEEGLA-------LRGTFIIDPDGVIRHILVNPL 144 (194)
T ss_pred --cHHHHHHHHhcHHhcCCccceecceEEcCc---hhHHHHcCCcccCCCcc-------eeEEEEECCCCeEEEEEEecC
Confidence 88888888844 455 6899997655 55889999877555532 288999999999987653332
Q ss_pred ----ChHHHHHHHHHHh
Q 026011 231 ----SPFQIEKDIQKLV 243 (245)
Q Consensus 231 ----~~~~l~~~l~~ll 243 (245)
+.+++.+.|+.+.
T Consensus 145 ~iGRn~dEilR~idAlq 161 (194)
T COG0450 145 TIGRNVDEILRVIDALQ 161 (194)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 5677777777653
No 44
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=8.9e-22 Score=191.87 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=120.5
Q ss_pred ccccccCcccCeEEEc--CCCCeeec-CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011 80 ATAATEKSLYDFTVKD--IDGKDVPL-SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (245)
Q Consensus 80 ~~~~~g~~~pdf~l~~--~~G~~v~l-~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~ 156 (245)
.....|..+|+|...+ .+|+++++ ++++||+|||+||++||++|+.++|.|++++++|++++++||+|+++.+ +.
T Consensus 389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~--D~ 466 (1057)
T PLN02919 389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF--DN 466 (1057)
T ss_pred hccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc--cc
Confidence 3455799999999876 68999998 5899999999999999999999999999999999999999999986532 11
Q ss_pred CCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011 157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~ 236 (245)
.++.+++++++ +++++.||++.|.+ + .+.+.|+ |..+|+++|||++|+|++++.|....++++
T Consensus 467 ~~~~~~~~~~~-~~~~i~~pvv~D~~--~-~~~~~~~-------------V~~iPt~ilid~~G~iv~~~~G~~~~~~l~ 529 (1057)
T PLN02919 467 EKDLEAIRNAV-LRYNISHPVVNDGD--M-YLWRELG-------------VSSWPTFAVVSPNGKLIAQLSGEGHRKDLD 529 (1057)
T ss_pred cccHHHHHHHH-HHhCCCccEEECCc--h-HHHHhcC-------------CCccceEEEECCCCeEEEEEecccCHHHHH
Confidence 23567888998 79999999985432 2 2222332 667799999999999999999998899999
Q ss_pred HHHHHHhh
Q 026011 237 KDIQKLVV 244 (245)
Q Consensus 237 ~~l~~ll~ 244 (245)
+.|++++.
T Consensus 530 ~~l~~~l~ 537 (1057)
T PLN02919 530 DLVEAALQ 537 (1057)
T ss_pred HHHHHHHH
Confidence 99888763
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.85 E-value=8.2e-21 Score=138.40 Aligned_cols=116 Identities=31% Similarity=0.533 Sum_probs=99.4
Q ss_pred CeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026011 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT 169 (245)
Q Consensus 90 df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~ 169 (245)
+|++.+.+|+.+++.+++||++||+||++||+.|+..++.|.++++++++.++.+++|++|. ++.+.+++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHH-H
Confidence 57889999999999999999999999999999999999999999999987789999999982 1489999999 7
Q ss_pred hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011 170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (245)
Q Consensus 170 ~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g 228 (245)
+++.+++++.|. ...+.+.|+ +.++|+++|+|++|++++++.|
T Consensus 74 ~~~~~~~~~~~~---~~~~~~~~~-------------~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVLLDP---DGELAKAYG-------------VRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceEEcC---cchHHHhcC-------------cCccceEEEECCCCcEEEEecC
Confidence 888999998553 233444454 4556999999999999998865
No 46
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.85 E-value=6.1e-21 Score=147.88 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=106.0
Q ss_pred ccCcccCeEEEcCC---CCeeecCC-CCCCEEEEEEe-cCCCCCChHH-HHHHHHHHHHhhhCCc-EEEEEecCCCCCCC
Q 026011 84 TEKSLYDFTVKDID---GKDVPLSK-FKGKVLLIVNV-ASRCGLTPSN-YSELSHLYEKYKTQGF-EILAFPCNQFGGQE 156 (245)
Q Consensus 84 ~g~~~pdf~l~~~~---G~~v~l~~-~~gk~vll~F~-~t~C~~C~~~-~~~l~~l~~~~~~~g~-~vv~Vs~D~~~~~~ 156 (245)
+|+.+|+|++++.+ |+.++|++ ++||++||+|| +.|||.|..+ ++.|++.+++|.+.|+ +|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58899999999985 99999999 68886666665 9999999999 9999999999999999 69999988
Q ss_pred CCChHHHHHHHHHhcCC--CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011 157 PGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~ 230 (245)
+.+.+++|+ +++++ +||+++|.+ ..+.+.|+.+..... .+......+.+|||| +|+|++.+....
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lLsD~~---~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~ 141 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFLADGN---GEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEED 141 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEEECCC---HHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence 899999999 78887 899997754 557888886544321 010011238899999 799998875543
No 47
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.84 E-value=1.8e-20 Score=147.58 Aligned_cols=132 Identities=21% Similarity=0.214 Sum_probs=97.8
Q ss_pred ccccCcccCeEEEcC-----C-----CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEE------E
Q 026011 82 AATEKSLYDFTVKDI-----D-----GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI------L 145 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~-----~-----G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~v------v 145 (245)
+..|+++|...+.|- + .+.++.++++||++||.|||+||++|..+.|.|.++ +++|+.+ +
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~ 98 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTT 98 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceE
Confidence 456777777766554 3 356778889999999999999999999999999998 4456888 9
Q ss_pred EEecCCCCCCCCCChHHHHHHHHHhcCCCcc---eeeccCCCCCCcchhhhhhhcccCCCCCCccccceeE-EEECCCCc
Q 026011 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFP---IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEK-FLVDKNGK 221 (245)
Q Consensus 146 ~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~-~liD~~G~ 221 (245)
+|+.|+ ...+...-+++|+ ++.+..|| ++. |.++. ....|+ +...|++ ||||++|+
T Consensus 99 ~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vll--D~~g~-v~~~~g-------------v~~~P~T~fVIDk~Gk 158 (184)
T TIGR01626 99 IINADD---AIVGTGMFVKSSA-KKGKKENPWSQVVL--DDKGA-VKNAWQ-------------LNSEDSAIIVLDKTGK 158 (184)
T ss_pred EEECcc---chhhHHHHHHHHH-HHhcccCCcceEEE--CCcch-HHHhcC-------------CCCCCceEEEECCCCc
Confidence 999882 0011233456666 67788888 664 33332 334444 5556888 89999999
Q ss_pred EEEecCCCCChHHHHH
Q 026011 222 VIERYPPTTSPFQIEK 237 (245)
Q Consensus 222 i~~~~~g~~~~~~l~~ 237 (245)
|++++.|..+.+++++
T Consensus 159 Vv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 159 VKFVKEGALSDSDIQT 174 (184)
T ss_pred EEEEEeCCCCHHHHHH
Confidence 9999999998887766
No 48
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.83 E-value=2e-20 Score=146.56 Aligned_cols=121 Identities=15% Similarity=0.237 Sum_probs=93.8
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~ 163 (245)
.....|+|++. +|+.+++++++ ||+||++|||+|+.++|.|+++++++ |++|++|++|+ ..
T Consensus 51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~~--- 111 (181)
T PRK13728 51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------QG--- 111 (181)
T ss_pred CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------CC---
Confidence 44567888885 89999999998 77799999999999999999999997 59999999882 11
Q ss_pred HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE-EecCCCCChHHHHHHHHHH
Q 026011 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~-~~~~g~~~~~~l~~~l~~l 242 (245)
...||++.|. .+......|+. .+.++|++||||++|+++ ..+.|..+.+++++.|+++
T Consensus 112 --------~~~fPv~~dd--~~~~~~~~~g~-----------~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 112 --------DTAFPEALPA--PPDVMQTFFPN-----------IPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred --------CCCCceEecC--chhHHHHHhCC-----------CCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence 2578888421 11212222321 013559999999999996 5799999999999999998
Q ss_pred hh
Q 026011 243 VV 244 (245)
Q Consensus 243 l~ 244 (245)
++
T Consensus 171 l~ 172 (181)
T PRK13728 171 LQ 172 (181)
T ss_pred Hh
Confidence 75
No 49
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.83 E-value=7.3e-21 Score=143.70 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=83.5
Q ss_pred CCC-CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011 96 IDG-KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 96 ~~G-~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+|| +++++++++||++||+||++||++|+.+++.|++++++++++ +++|++|++|. +.+.+++|+ ++++
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC
Confidence 344 489999999999999999999999999999999999999875 79999999983 567888998 6766
Q ss_pred CCcceeeccCC-CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011 173 AEFPIFDKVDV-NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (245)
Q Consensus 173 ~~~p~~~d~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~ 227 (245)
.+..+...+. ....+.+.|+ |..+|+++|||++|+|+++..
T Consensus 76 -~~~~~~~~d~~~~~~~~~~~~-------------v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 76 -PWLAVPFEDEELRELLEKQFK-------------VEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred -CeEeeccCcHHHHHHHHHHcC-------------CCCCCEEEEECCCCCEEchhH
Confidence 4443321110 0011222232 566799999999999987754
No 50
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.83 E-value=7.7e-20 Score=147.75 Aligned_cols=151 Identities=22% Similarity=0.347 Sum_probs=122.2
Q ss_pred CeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhh---hCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYK---TQGFEILAFPCNQFGGQEPGSNPEIKE 165 (245)
Q Consensus 90 df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~---~~g~~vv~Vs~D~~~~~~~~~~~~~~~ 165 (245)
+|+++|.+|+.+++.+++||++||+|.+|+|| .|+.++..|.++++++. ..+++++.|++| |++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 89999999999999999999999999999999 99999999999999988 345899999999 89999999999
Q ss_pred HHHH-hcCCCcceeeccCCCCCCcchhhhhhhcccCCC--CCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 166 FACT-RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGF--LGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 166 ~~~~-~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~--~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
|+ . .+...|..+.........+.+.|+++....... ..+.+.|...+||||++|+++..+.+..+++++.+.|+++
T Consensus 125 Y~-~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 125 YA-ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred Hh-cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 99 5 444445555432222344445555543112211 3567999999999999999999998888899999999999
Q ss_pred hhC
Q 026011 243 VVA 245 (245)
Q Consensus 243 l~~ 245 (245)
+++
T Consensus 204 ~~~ 206 (207)
T COG1999 204 LKE 206 (207)
T ss_pred hhc
Confidence 863
No 51
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.82 E-value=2.6e-20 Score=147.04 Aligned_cols=140 Identities=21% Similarity=0.325 Sum_probs=107.2
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCCh
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSN 160 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~ 160 (245)
.....|+|+|.|.+|+.+++++++||++||+|.++.|| .|+..+..|.++++++.++ .+++|.||+| |+.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 45568899999999999999999999999999999999 9999999999999998864 5999999999 888999
Q ss_pred HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhccc---CCCCCCccccceeEEEECCCCcEEEecCC
Q 026011 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~~P~~~liD~~G~i~~~~~g 228 (245)
+.+++|+ +.++.++..+......-..+.+.|+..-... .....+.+.|...+||||++|+++..|.+
T Consensus 104 ~~L~~Y~-~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHH-HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHH-HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999 7888887766432211122333344321111 12334568999999999999999998864
No 52
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.81 E-value=3e-20 Score=140.07 Aligned_cols=111 Identities=21% Similarity=0.360 Sum_probs=82.9
Q ss_pred EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011 93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (245)
Q Consensus 93 l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~ 170 (245)
+.|.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ +++|++|++|. +.+..+++. ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence 568899999999999999999999999999999999999999999865 69999999983 556777777 44
Q ss_pred cCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011 171 FKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (245)
Q Consensus 171 ~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~ 226 (245)
++. .+|+.. .+ ....+.+.|+ |..+|+++|||++|+|+.+.
T Consensus 75 ~~~~~~~~~~-~~-~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 75 MPWLAVPFSD-RE-RRSRLNRTFK-------------IEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCeeEcccCC-HH-HHHHHHHHcC-------------CCCCCEEEEECCCCCEEccc
Confidence 321 111110 00 0011222232 55669999999999998764
No 53
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.80 E-value=7.2e-19 Score=126.65 Aligned_cols=107 Identities=68% Similarity=1.225 Sum_probs=99.5
Q ss_pred cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC 168 (245)
Q Consensus 89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~ 168 (245)
.||+++|++|++++|++++||++||.-.|+.|+... +...|++++++|+++|++|+++.+++|+.+++++.+++++++.
T Consensus 2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~ 80 (108)
T PF00255_consen 2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK 80 (108)
T ss_dssp GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence 589999999999999999999999999999999988 9999999999999999999999999999999999999999997
Q ss_pred HhcCCCcceeeccCCCCCCcchhhhhhh
Q 026011 169 TRFKAEFPIFDKVDVNGPNTAPVYQFLK 196 (245)
Q Consensus 169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~ 196 (245)
.+++..||++...+++|....++|++++
T Consensus 81 ~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 81 EKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp HCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred hccCCcccceEEEEecCCCCcHHHHHhC
Confidence 7799999999999999999999999864
No 54
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-18 Score=129.26 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=114.9
Q ss_pred cccccCcccCeEEEcCCCCeeecCCCCCC-EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~ 158 (245)
...+|+.+|||+|+|.||+.++|.++.|+ +||++|| +...|.|..+...+++-|++++..|.+|+++|.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 56799999999999999999999999886 8888777 7888999999999999999999999999999988
Q ss_pred ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChH-HHHH
Q 026011 159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPF-QIEK 237 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~-~l~~ 237 (245)
+....+.|. .+++++|.+++|.. .++...++.-+...||..+ +..||+|++|.....+.....++ .+.+
T Consensus 134 ~s~sqKaF~-sKqnlPYhLLSDpk---~e~ik~lGa~k~p~gg~~~------Rsh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 134 DSASQKAFA-SKQNLPYHLLSDPK---NEVIKDLGAPKDPFGGLPG------RSHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred chHHHHHhh-hhccCCeeeecCcc---hhHHHHhCCCCCCCCCccc------ceEEEEecCCeEEEEEecccCccccHHH
Confidence 788899998 89999999996533 4455666654444444332 77899999887766555555554 4455
Q ss_pred HHHHHh
Q 026011 238 DIQKLV 243 (245)
Q Consensus 238 ~l~~ll 243 (245)
.++.++
T Consensus 204 a~k~~~ 209 (211)
T KOG0855|consen 204 ALKFLK 209 (211)
T ss_pred HHHHHh
Confidence 554443
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.77 E-value=5.1e-19 Score=125.79 Aligned_cols=94 Identities=23% Similarity=0.283 Sum_probs=70.9
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhh-hCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
||+++|+||++||++|..+++.|.+++++++ +.++++|+|+.| ++.++.+++. ++++.++..+...+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 70 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFL-KKNNFPWYNVPFDDDN-- 70 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHH-HTCTTSSEEEETTTHH--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHH-HhcCCCceEEeeCcch--
Confidence 7999999999999999999999999999999 556999999998 3678999998 6776666665322211
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcE
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV 222 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i 222 (245)
...+.+.+ .|..+|+++|+|++|+|
T Consensus 71 -~~~l~~~~----------~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 -NSELLKKY----------GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp -HHHHHHHT----------T-TSSSEEEEEETTSBE
T ss_pred -HHHHHHHC----------CCCcCCEEEEECCCCCC
Confidence 12222221 16777999999999987
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.73 E-value=1.8e-17 Score=127.57 Aligned_cols=109 Identities=14% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026011 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (245)
Q Consensus 98 G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (245)
|+.+.++++ .||+||++||++|+.++|.|+++++++ |++|++|++|. .. . + .||.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~-----~----~fp~ 98 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L-----T----GFPD 98 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c-----c----cccc
Confidence 566666554 499999999999999999999999987 48999999882 11 0 1 2443
Q ss_pred eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHh
Q 026011 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 178 ~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll 243 (245)
..+.+ +......|+. +.+..+|++||||++|++ +.++.|..+.+++++.|+++|
T Consensus 99 ~~~~~--~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 PLPAT--PEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred ccCCc--hHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 32111 1111111210 015566999999999886 557889999999999998875
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.72 E-value=1.8e-17 Score=126.49 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=84.8
Q ss_pred EEEcCCCCeeecCC--CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026011 92 TVKDIDGKDVPLSK--FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT 169 (245)
Q Consensus 92 ~l~~~~G~~v~l~~--~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~ 169 (245)
++++++++...+++ .+||++||+||++||++|+.+.|.|.++++++.++ +.++.|++|. . ...+.+ +
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~--------~-~~~~~~-~ 70 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN--------P-KWLPEI-D 70 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC--------c-ccHHHH-H
Confidence 34555666655554 37899999999999999999999999999999765 8899998872 1 112223 3
Q ss_pred hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 170 ~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
+|+ |..+|+++|+|++|+++.++.|..+.+++.+.|+++++
T Consensus 71 ~~~----------------------------------V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 71 RYR----------------------------------VDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred HcC----------------------------------CCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 322 44459999999999999999999989999999998875
No 58
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.71 E-value=6.7e-17 Score=130.19 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=117.5
Q ss_pred cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhC-C--cEEEEEecCCCCCCCCCChHHHH
Q 026011 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ-G--FEILAFPCNQFGGQEPGSNPEIK 164 (245)
Q Consensus 89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~-g--~~vv~Vs~D~~~~~~~~~~~~~~ 164 (245)
-+|+|.|.+|+.++-.|++||++||+|..|+|| .|+.++..|.+..++..++ | +.-|.|++| |++|+++.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 589999999999999999999999999999999 9999999999999988765 3 335899999 8999999999
Q ss_pred HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcc-cCC-CCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS-AGG-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
+|+ ++++...--+......-..+.+.|+++-+. ... ...+.|.|.-.+||||++|+.+..|.-..+++++.+.|.+-
T Consensus 196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 999 777755433322221223344555543222 222 34567999999999999999998887777889988887765
Q ss_pred hh
Q 026011 243 VV 244 (245)
Q Consensus 243 l~ 244 (245)
+.
T Consensus 275 v~ 276 (280)
T KOG2792|consen 275 VA 276 (280)
T ss_pred HH
Confidence 43
No 59
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.9e-16 Score=118.17 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=106.4
Q ss_pred cccCcccCeEEEc-CCC--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011 83 ATEKSLYDFTVKD-IDG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (245)
Q Consensus 83 ~~g~~~pdf~l~~-~~G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~ 158 (245)
.+..++|+|.-+. +|| ++++|++|+||+|+++|| ..+..+|+.++-.+.+.+++|++.|.+||++|+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D-------- 76 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD-------- 76 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence 3455668888665 466 689999999999999998 7888899999999999999999999999999999
Q ss_pred ChHHHHHHHH---HhcCC---CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011 159 SNPEIKEFAC---TRFKA---EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (245)
Q Consensus 159 ~~~~~~~~~~---~~~~~---~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~ 230 (245)
+...+.+|+. ++.++ ++|+++|.. ..+.+-|+++....|-.+ +..||||++|.+++.-....
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD~~---~~IsrdyGvL~~~~G~~l-------RglfIId~~gi~R~it~NDl 144 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLN---HEISRDYGVLKEDEGIAL-------RGLFIIDPDGILRQITINDL 144 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeeccc---hhhHHhcCceecCCCcce-------eeeEEEccccceEEeeeccc
Confidence 8889999983 33444 599997654 568899999988776443 78999999999987544433
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.64 E-value=2.4e-15 Score=108.56 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (245)
Q Consensus 104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~ 183 (245)
.+.+||+|||+||++||++|+.+.|.|.++.+++ .++.++.|+.| ......+++ ++++
T Consensus 11 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d--------~~~~~~~l~-~~~~----------- 68 (103)
T cd02985 11 KKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGD--------ENDSTMELC-RREK----------- 68 (103)
T ss_pred HHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECC--------CChHHHHHH-HHcC-----------
Confidence 3456999999999999999999999999999999 34899999987 223344555 4433
Q ss_pred CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~ 240 (245)
|..+|+++++ ++|+++.++.|. .++++.+.+.
T Consensus 69 -----------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 69 -----------------------IIEVPHFLFY-KDGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred -----------------------CCcCCEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Confidence 3444986555 999999999995 5667776654
No 61
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.6e-15 Score=112.63 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=76.3
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.++||||+|||.||++|+...|.|+++..+|.++ +++..|++|+ . -+.+ .+|+
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~----~ela-~~Y~-------------- 112 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------H----PELA-EDYE-------------- 112 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------c----cchH-hhcc--------------
Confidence 4679999999999999999999999999999776 9999998872 1 2233 3333
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 245 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 245 (245)
|.+.|+++++ +||+.+.++.|..+.+.+.+.|++.|+.
T Consensus 113 --------------------I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~~ 150 (150)
T KOG0910|consen 113 --------------------ISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLKL 150 (150)
T ss_pred --------------------eeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhcC
Confidence 5555988888 8999999999999999999999998863
No 62
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.56 E-value=1e-14 Score=110.48 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=91.3
Q ss_pred eEEEcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 91 FTVKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 91 f~l~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
..+...+|..+..+ .++||+|.++|-+.|||+|+...|.|.++|++.++.+ ++||.||.| .+.+++.+|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence 67788889888877 5899999999999999999999999999999998764 999999998 3788888888
Q ss_pred HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (245)
Q Consensus 168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~ 226 (245)
..++.+|..+-..|...++....|. |..+|.+.+++++|+++...
T Consensus 88 -~~~~~~W~~iPf~d~~~~~l~~ky~-------------v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 88 -LEHHGDWLAIPFGDDLIQKLSEKYE-------------VKGIPALVILKPDGTVVTED 132 (157)
T ss_pred -HhcCCCeEEecCCCHHHHHHHHhcc-------------cCcCceeEEecCCCCEehHh
Confidence 6666666665333322233333333 77779999999999887554
No 63
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.53 E-value=8e-14 Score=101.98 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=73.2
Q ss_pred CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 105 ~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
..+|+++||+||++||++|+...|.+.++.+++++.++.++.|++| ... +.+ ++++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--------~~~---~l~-~~~~------------ 76 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--------HER---RLA-RKLG------------ 76 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--------ccH---HHH-HHcC------------
Confidence 3468999999999999999999999999999998767899999876 221 222 3322
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
|..+|+++++ ++|+++.++.|..+.+++.+.|+++
T Consensus 77 ----------------------V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 77 ----------------------AHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ----------------------CccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 4445999999 5999999999988888998888764
No 64
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.52 E-value=8.1e-14 Score=100.39 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.|++++|+||++||++|+.+.|.|.++++++++..+.++.|+.| .. +.+ ++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~----~~~-~~~~-------------- 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TI----DTL-KRYR-------------- 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CH----HHH-HHcC--------------
Confidence 58899999999999999999999999999998666788888765 22 222 3333
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
|...|+++++ ++|+++.+..|. +++.+.+.|+++
T Consensus 69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 69 --------------------GKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred --------------------CCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence 3444965555 799999999885 778888888764
No 65
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.5e-13 Score=103.53 Aligned_cols=150 Identities=15% Similarity=0.236 Sum_probs=111.2
Q ss_pred cccccCcccCeEEEcCCCCeeecCCCCCC-EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~ 158 (245)
++..|+.+|+|+..+..| .+++.||-|. +.+++-. +.+.|+|..++..+.++..+|.++|++.|++|+|
T Consensus 5 ~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d-------- 75 (224)
T KOG0854|consen 5 RLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD-------- 75 (224)
T ss_pred cccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------
Confidence 456899999999998887 6799999886 5555433 8999999999999999999999999999999999
Q ss_pred ChHHHHHHHH------Hhc--CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec--CC
Q 026011 159 SNPEIKEFAC------TRF--KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY--PP 228 (245)
Q Consensus 159 ~~~~~~~~~~------~~~--~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~--~g 228 (245)
+.+.+++|++ +.. ..+||++.|.. .+++.+|+.+..+..+..+.. ...+.+||||++.+|+-.+ ..
T Consensus 76 ~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~---rela~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs~lYP~ 151 (224)
T KOG0854|consen 76 DVESHKDWIKDIKSYAKVKNHSVPYPIIADPN---RELAFLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLSFLYPS 151 (224)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeecCCc---hhhhhhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEEEEccc
Confidence 5555555552 222 37899995533 557777877665544433332 2237899999999998543 21
Q ss_pred C--CChHHHHHHHHHHh
Q 026011 229 T--TSPFQIEKDIQKLV 243 (245)
Q Consensus 229 ~--~~~~~l~~~l~~ll 243 (245)
. .+.+++.+.|+.|+
T Consensus 152 ttGRN~dEiLRvidsLq 168 (224)
T KOG0854|consen 152 TTGRNFDEILRVIDSLQ 168 (224)
T ss_pred ccCcCHHHHHHHHHHHh
Confidence 1 26778888887764
No 66
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.51 E-value=1e-13 Score=100.15 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=70.9
Q ss_pred CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~ 183 (245)
.||++||.||++||++|+...+.+ .++.+.+.+ ++.++.|++++ ..+...+++ ++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~~~----------- 69 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KRFG----------- 69 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HHcC-----------
Confidence 578999999999999999998877 577788876 69999998762 222234454 4433
Q ss_pred CCCCcchhhhhhhcccCCCCCCccccceeEEEECC-CCcEEEecCCCCChHHHHHHHH
Q 026011 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~-~G~i~~~~~g~~~~~~l~~~l~ 240 (245)
|..+|+++++++ +|+++.++.|..+.+++.+.|+
T Consensus 70 -----------------------i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 70 -----------------------VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred -----------------------CCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 344599999999 9999999999999988887763
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.50 E-value=1.7e-13 Score=102.28 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=73.6
Q ss_pred CC-CEEEEEEecCCCCCChHHHHHHH---HHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011 107 KG-KVLLIVNVASRCGLTPSNYSELS---HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (245)
Q Consensus 107 ~g-k~vll~F~~t~C~~C~~~~~~l~---~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d 182 (245)
+| |++||+||++||++|+.+.+.+. ++.+.+.+ ++.++.|++|. ...+.+|- . ..
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~--------~~~~~~~~--~----------~~ 70 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG--------DKEVTDFD--G----------EA 70 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC--------CceeeccC--C----------CC
Confidence 57 89999999999999999998875 56666654 58899998872 11111110 0 00
Q ss_pred CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHhh
Q 026011 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
.....+...|+ |..+|+++++|++ |+++.++.|..+.+++.+.|+.+++
T Consensus 71 ~~~~~l~~~~~-------------v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 71 LSEKELARKYR-------------VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccHHHHHHHcC-------------CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 00011122222 5566999999999 8999999999999999999998875
No 68
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.49 E-value=6.1e-14 Score=117.93 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=79.6
Q ss_pred CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 99 ~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
+...+++++|+++||+||++||++|+.+.|.|+++++++ |++|++|++|. ... ..||.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~~ 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPNA 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCcc
Confidence 346788899999999999999999999999999999987 48999999982 110 014443
Q ss_pred eccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHh
Q 026011 179 DKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 179 ~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
+.+ ......|+ |.++|++||+|++ |++.....|..+.++|.+.|..+.
T Consensus 216 ---~~d-~~la~~~g-------------V~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 216 ---RPD-AGQAQQLK-------------IRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred ---cCC-HHHHHHcC-------------CCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 111 11222332 6677999999995 666666778889999988887654
No 69
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.49 E-value=8.1e-14 Score=100.03 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=64.4
Q ss_pred CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (245)
Q Consensus 104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~ 183 (245)
.+++||++||+||++||++|+.+.|.+.++.+++++ +.++.|..| . ...+.+ ++++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~--------~--~~~~l~-~~~~----------- 69 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEES--------S--IKPSLL-SRYG----------- 69 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECC--------C--CCHHHH-HhcC-----------
Confidence 457999999999999999999999999999999864 778887543 0 011222 2222
Q ss_pred CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
|.++|+++++++ | .+.++.|..+.+++.+.
T Consensus 70 -----------------------V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 70 -----------------------VVGFPTILLFNS-T-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred -----------------------CeecCEEEEEcC-C-ceeEecCCCCHHHHHhh
Confidence 455599999964 5 67889998888877664
No 70
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.48 E-value=2.3e-13 Score=96.64 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
+|+++||+||++||++|+...+.++++.+.+.+. +.++.|++| .. .+.+ ++++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~--------~~---~~l~-~~~~-------------- 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCD--------AQ---PQIA-QQFG-------------- 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEecc--------CC---HHHH-HHcC--------------
Confidence 5789999999999999999999999999999764 888888876 22 2233 3333
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
|...|++++++ +|+++.++.|..+.+++.+.|
T Consensus 64 --------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 64 --------------------VQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --------------------CCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 33449999996 999999999988888888766
No 71
>PHA02278 thioredoxin-like protein
Probab=99.44 E-value=5.8e-13 Score=95.87 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=64.5
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
+++++||+||++||++|+...|.+.++.+++..+ +.++.|++|. ......+.+ ++++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~-------~~~d~~~l~-~~~~-------------- 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDA-------EDVDREKAV-KLFD-------------- 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCc-------cccccHHHH-HHCC--------------
Confidence 5789999999999999999999999998875443 7789998872 110112222 3332
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK 237 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~ 237 (245)
|..+|+++++ ++|+++.+..|..+.+++.+
T Consensus 70 --------------------I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 70 --------------------IMSTPVLIGY-KDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred --------------------CccccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence 4455977777 78999999999887777654
No 72
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.8e-12 Score=96.79 Aligned_cols=127 Identities=21% Similarity=0.224 Sum_probs=99.4
Q ss_pred cccccCcccCeEEEcCCCCeeecCCCCCCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
.+++|+++|+|++.+.+.+.+++.++.||.. |..|..-..|.|..+.+++++...++.+ ..|+.||.| .
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------L 86 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------L 86 (158)
T ss_pred CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------C
Confidence 3679999999999999999999999999955 4566688999999999999999998865 899999998 8
Q ss_pred hHHHHHHHHHhcCCC-cceeeccCCCCCCcchhhhhhhcccC--CCCCCccccceeEEEECCCCcEEEec
Q 026011 160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERY 226 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~liD~~G~i~~~~ 226 (245)
+...++|+ ...++. ...++ |.......+.|+.+..+.. |.+. +++|++|.+|+|+|.-
T Consensus 87 PFAq~RfC-~aeGi~nv~~lS--d~r~~~Fge~yGv~I~egpL~gLlA------RaV~V~De~g~V~y~e 147 (158)
T COG2077 87 PFAQKRFC-GAEGIENVITLS--DFRDRAFGENYGVLINEGPLAGLLA------RAVFVLDENGKVTYSE 147 (158)
T ss_pred hhHHhhhh-hhcCcccceEhh--hhhhhhhhHhhCEEeccccccCeee------eEEEEEcCCCcEEEEE
Confidence 99999999 666765 44453 3333444556665544321 2221 7899999999998764
No 73
>PRK09381 trxA thioredoxin; Provisional
Probab=99.43 E-value=1.2e-12 Score=95.23 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+++++|+||++||++|+...|.++++.+++.++ +.++.|++|. .. ... ++++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~--------~~---~~~-~~~~-------------- 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ--------NP---GTA-PKYG-------------- 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC--------Ch---hHH-HhCC--------------
Confidence 3679999999999999999999999999999875 8999998872 11 112 2322
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
+...|+++++ ++|+++.++.|..+.+++++.|++.|+
T Consensus 73 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 73 --------------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred --------------------CCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 3334988888 799999999999899999999988763
No 74
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.42 E-value=6.3e-13 Score=95.41 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=70.2
Q ss_pred CCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011 96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (245)
Q Consensus 96 ~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
++++.++..-.++++++|.||++||++|+.+.|.+.++.+++++. +.+..|++|+ . .+.+ ++++
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~--------~---~~~~-~~~~--- 69 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD--------D---RMLC-RSQG--- 69 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc--------c---HHHH-HHcC---
Confidence 344444333335689999999999999999999999999999865 8899999872 1 2233 3433
Q ss_pred ceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011 176 PIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK 237 (245)
Q Consensus 176 p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~ 237 (245)
|..+|+++++ ++|+.+.++.|..+.+.|.+
T Consensus 70 -------------------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 70 -------------------------------VNSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred -------------------------------CCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 3344988888 78998889999888877665
No 75
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.42 E-value=5.4e-13 Score=97.10 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.++++||+||++||++|+.+.|.|.++.+++.+. +.++.|++|+ . .+.+ ++|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~--------~---~~la-~~~~-------------- 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE--------V---PDFN-KMYE-------------- 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC--------C---HHHH-HHcC--------------
Confidence 4679999999999999999999999999999765 7899998872 2 2333 4433
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPF 233 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~ 233 (245)
|..+|+++++ ++|+++.+..|..+..
T Consensus 66 --------------------V~~iPTf~~f-k~G~~v~~~~G~~~~~ 91 (114)
T cd02954 66 --------------------LYDPPTVMFF-FRNKHMKIDLGTGNNN 91 (114)
T ss_pred --------------------CCCCCEEEEE-ECCEEEEEEcCCCCCc
Confidence 3444987777 8999999988865433
No 76
>PRK10996 thioredoxin 2; Provisional
Probab=99.41 E-value=6.6e-13 Score=101.01 Aligned_cols=89 Identities=12% Similarity=0.210 Sum_probs=71.4
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
++|+++|+||++||++|+...+.|.++++++.+. +.++.|++| .. .+.. ++++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~--------~~---~~l~-~~~~-------------- 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTE--------AE---RELS-ARFR-------------- 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCC--------CC---HHHH-HhcC--------------
Confidence 5789999999999999999999999999988764 888888766 22 2233 3333
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
|..+|+++++ ++|+++.++.|..+.+++++.|++++
T Consensus 104 --------------------V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 104 --------------------IRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred --------------------CCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 3344988777 59999999999999999999998864
No 77
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1e-12 Score=108.93 Aligned_cols=90 Identities=19% Similarity=0.322 Sum_probs=76.1
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
+-+||||+||++||++|+..+|.|.++..+|+++ +.+..|++|. . ...+ ..++
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~--------~---p~vA-aqfg-------------- 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA--------E---PMVA-AQFG-------------- 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc--------c---hhHH-HHhC--------------
Confidence 5569999999999999999999999999999987 9999999982 2 1222 2322
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
|+.+|++|++ ++|+-+.-|.|..+.+++.+.|++++.
T Consensus 95 --------------------iqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 95 --------------------VQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred --------------------cCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 5666999999 999999999999999999999998863
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.38 E-value=1.5e-13 Score=100.47 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHH---HHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHL---YEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l---~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~ 183 (245)
+||++|++||.+||++|+...+.+.+. ...+++ ++.++.++++. ..+....+. +..+...+....
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~--- 71 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVL-DFDGQKNVRLSN--- 71 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHH-SHTCHSSCHHHH---
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------ccccccccc-ccccchhhhHHH---
Confidence 589999999999999999888888754 334433 48899998872 333333444 322221111100
Q ss_pred CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
..+...|+ |.++|+++++|++|+++.++.|..+++++.+.|
T Consensus 72 --~~l~~~~~-------------v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 --KELAQRYG-------------VNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --HHHHHHTT---------------SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred --HHHHHHcC-------------CCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 11122222 777899999999999999999999999988765
No 79
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.8e-12 Score=91.31 Aligned_cols=85 Identities=24% Similarity=0.326 Sum_probs=68.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+|.++|+|+++||++|+...|.+.++..+|.+ +.++.|++| . +.+.+ .+++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~~~-------------- 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KEFN-------------- 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-HhcC--------------
Confidence 368999999999999999999999999999987 899999987 2 45555 3433
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ 241 (245)
|...|+++++ ++|+.+.++.|.. .+++++.|.+
T Consensus 72 --------------------V~~~PTf~f~-k~g~~~~~~vGa~-~~~l~~~i~~ 104 (106)
T KOG0907|consen 72 --------------------VKAMPTFVFY-KGGEEVDEVVGAN-KAELEKKIAK 104 (106)
T ss_pred --------------------ceEeeEEEEE-ECCEEEEEEecCC-HHHHHHHHHh
Confidence 4445988888 9999999998874 4467666654
No 80
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.37 E-value=3e-12 Score=91.82 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=65.2
Q ss_pred CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
.+|+ +||.||++||++|+...|.+.++.+++++.++.+..|++|. .. ..+ ++++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--------~~---~~~-~~~~------------- 68 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--------EP---GLS-GRFF------------- 68 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--------CH---hHH-HHcC-------------
Confidence 3566 57999999999999999999999998876668888888762 11 122 3332
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~ 240 (245)
|..+|+++++ ++|++ .++.|..+.++|.+.|+
T Consensus 69 ---------------------i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 69 ---------------------VTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ---------------------CcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 3444998887 88986 78889888888877765
No 81
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.37 E-value=4.4e-12 Score=95.83 Aligned_cols=91 Identities=10% Similarity=-0.001 Sum_probs=69.9
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+++|||+||++||++|+...|.|.++.+++++. +.|+-|++|+ . .+++ +.|++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~---~dla-~~y~I------------- 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------V---PDFN-TMYEL------------- 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------C---HHHH-HHcCc-------------
Confidence 5689999999999999999999999999999776 8889998882 2 3444 44443
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCc-EEEecCC--------CCChHHHHHHHHHHhh
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPP--------TTSPFQIEKDIQKLVV 244 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~-i~~~~~g--------~~~~~~l~~~l~~ll~ 244 (245)
...|+++++-++|+ .+.+..| ..+.+++.+.++.++.
T Consensus 76 ---------------------~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 76 ---------------------YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred ---------------------cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 11266665558888 7888888 4577788888887763
No 82
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.35 E-value=5.9e-12 Score=90.76 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=66.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+++++|.||++||++|+...|.+.++.+++.+. +.+..|++| .. .+.+ ++++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~--------~~---~~~~-~~~~-------------- 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQ--------KY---ESLC-QQAN-------------- 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECC--------ch---HHHH-HHcC--------------
Confidence 4679999999999999999999999999998654 889999877 22 2333 3433
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC-hHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS-PFQIEKD 238 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~-~~~l~~~ 238 (245)
|..+|++++++++|+.+.++.|..+ .++|.+.
T Consensus 71 --------------------i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 71 --------------------IRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred --------------------CCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 3344999999777688999999876 7777654
No 83
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.35 E-value=3.8e-12 Score=92.72 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=66.8
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
+||+++|.||++||++|+...|.+.++.+++++.++.++.|.+|. +. ..++.+.++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~---~~~~~~~~~-------------- 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQ---REFAKEELQ-------------- 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cc---hhhHHhhcC--------------
Confidence 578999999999999999999999999999997779999998871 11 122211222
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-CChHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPFQIEKD 238 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-~~~~~l~~~ 238 (245)
++.+|++++++++|+....|.|. .+.+.|...
T Consensus 76 --------------------v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 76 --------------------LKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred --------------------CCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 34459999999888878888885 567666544
No 84
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.31 E-value=1.1e-11 Score=90.68 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=65.8
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.++++||.||++||++|+...|.+.++.+++++. +.++.|++|. ...+ +.++|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~--------~~~l---~~~~~~-------------- 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW--------PQGK---CRKQKH-------------- 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC--------ChHH---HHHhcC--------------
Confidence 4679999999999999999999999999999765 8899998872 2222 212333
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
|.+.|++.++ ++|+...+|.|..+.+.|...
T Consensus 82 --------------------I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 82 --------------------FFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred --------------------CcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence 3344988888 789888889998888877654
No 85
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.31 E-value=1.3e-11 Score=89.01 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=64.6
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
++++++|.||++||++|+.+.|.++++++++++.+ +.+..++++ .. .+.. ++++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--------~~---~~~~-~~~~------------ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--------AY---SSIA-SEFG------------ 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--------cC---HhHH-hhcC------------
Confidence 45799999999999999999999999999997654 666667654 11 1222 2322
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
|.++|++++++ +| +..++.|..+.+++.+.++++
T Consensus 70 ----------------------I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 70 ----------------------VRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ----------------------CccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 44559999994 45 446788888888888888764
No 86
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.31 E-value=9.7e-12 Score=88.89 Aligned_cols=89 Identities=19% Similarity=0.136 Sum_probs=69.5
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC-cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g-~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
++++++|.||++||+.|+...+.++++.+.+++.+ +.++.+.+|. ..+.. ++++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~-~~~~------------- 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----------EKDLA-SRFG------------- 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----------hHHHH-HhCC-------------
Confidence 68899999999999999999999999999987653 7777776651 12222 3333
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
|...|+++++++++. +..+.|..+.+++...|++.
T Consensus 67 ---------------------i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 67 ---------------------VSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ---------------------CCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 334499999998887 67888988888998888764
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.30 E-value=1.2e-11 Score=89.75 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=67.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.|+++||.||++||++|+...|.+.++.+++.+. +.++.|++|. + ...+.+ ++++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~------~---~~~~~~-~~~~-------------- 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE------D---KNKPLC-GKYG-------------- 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc------c---ccHHHH-HHcC--------------
Confidence 4789999999999999999999999999998754 8899998872 1 112333 3332
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCC----cEEEecCCCCChHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG----KVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G----~i~~~~~g~~~~~~l~~~l 239 (245)
|...|++++++++| ++...|.|..+.+++.+.|
T Consensus 72 --------------------i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 72 --------------------VQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred --------------------CCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 34449999998876 3567888888888887765
No 88
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.30 E-value=7.2e-12 Score=89.74 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=62.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (245)
Q Consensus 110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 187 (245)
+++|.||++||++|+...|.++++++++++ .++.++.|.+| ... +.+ ++++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--------~~~---~~~-~~~~--------------- 70 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--------QHR---ELC-SEFQ--------------- 70 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--------CCh---hhH-hhcC---------------
Confidence 599999999999999999999999999976 34888888766 111 222 2222
Q ss_pred cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
|...|+++++ ++|+.+.++.|..+.+++.+.
T Consensus 71 -------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 71 -------------------VRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred -------------------CCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 3444998888 788888899998887777654
No 89
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.30 E-value=2e-11 Score=87.01 Aligned_cols=85 Identities=9% Similarity=0.197 Sum_probs=67.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+|+++++||++||+.|+...+.+.++.+++.+ ++.++.|+.| ... +.. ++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d--------~~~---~l~-~~~~-------------- 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID--------EDQ---EIA-EAAG-------------- 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC--------CCH---HHH-HHCC--------------
Confidence 578999999999999999999999999999875 3888888876 222 222 3322
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
|.++|+++++ ++|+++.++.|..+.+++.+.|
T Consensus 65 --------------------v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 65 --------------------IMGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred --------------------CeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 3344999999 5899999999988888877665
No 90
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.28 E-value=6e-11 Score=88.13 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=70.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.|+.++|+|+++|||+|+...|.|.++.++ .++.+..|++|.....+..+.+++.++. ++++....
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~~---------- 87 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPTS---------- 87 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHH-HHcCCccc----------
Confidence 467899999999999999999999999887 2378999998832221222334666776 56553221
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-CChHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPFQIEKDI 239 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-~~~~~l~~~l 239 (245)
|.++|+++++ ++|+++.+..|. .+.++|++.+
T Consensus 88 --------------------i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 88 --------------------FMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred --------------------CCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence 3445988877 899999999884 3566666554
No 91
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.24 E-value=6.8e-11 Score=84.17 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 187 (245)
+++++|+||++||+.|+...+.|+++.+++.++ +.++.|..| ... ++. ++++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~--------~~~---~~~-~~~~--------------- 65 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVD--------ENP---DIA-AKYG--------------- 65 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECC--------CCH---HHH-HHcC---------------
Confidence 569999999999999999999999999888754 999999876 221 222 3332
Q ss_pred cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
|...|+++++ ++|+++.++.|..+.+++.+.|++.+
T Consensus 66 -------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 66 -------------------IRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred -------------------CCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 3334999999 78999899989888889998888753
No 92
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.24 E-value=6e-11 Score=84.84 Aligned_cols=87 Identities=24% Similarity=0.343 Sum_probs=71.3
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.++++||.||++||+.|+...|.|.++.+++.+ ++.++.|.++ .. .+.+ ++++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~--------~~---~~l~-~~~~-------------- 68 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD--------EN---KELC-KKYG-------------- 68 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT--------TS---HHHH-HHTT--------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhh--------cc---chhh-hccC--------------
Confidence 368999999999999999999999999999987 6999999876 12 3333 4433
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ 241 (245)
|..+|+++++ ++|+...++.|..+.++|.+.|++
T Consensus 69 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 69 --------------------VKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp --------------------CSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred --------------------CCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 3344988877 788888899999999999999886
No 93
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.23 E-value=4.1e-11 Score=92.12 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
+++++||+||++||++|+...|.++++.+++.+.+++++.|++|+ .. +.+ +++++...
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~----~la-~~~~V~~~---------- 103 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FP----NVA-EKFRVSTS---------- 103 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CH----HHH-HHcCceec----------
Confidence 467999999999999999999999999999987679999999882 22 233 44443110
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g 228 (245)
| .++.+|+++++ ++|+.+.++.|
T Consensus 104 -----~-------------~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 104 -----P-------------LSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred -----C-------------CcCCCCEEEEE-ECCEEEEEEec
Confidence 0 03445987777 69999988876
No 94
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.22 E-value=9.1e-11 Score=86.58 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCEEEEEEecCCCCC--Ch--HHHHHHHHHHHHh-hhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011 108 GKVLLIVNVASRCGL--TP--SNYSELSHLYEKY-KTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (245)
Q Consensus 108 gk~vll~F~~t~C~~--C~--~~~~~l~~l~~~~-~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d 182 (245)
..++|++||+.||++ |+ ...|.|.++.+++ ++.++.++.|++|+ . .+.+ ++|+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~---~~La-~~~~---------- 84 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------D---AKVA-KKLG---------- 84 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------C---HHHH-HHcC----------
Confidence 349999999999987 99 7778899988887 23359999999872 2 2333 4444
Q ss_pred CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
|.++|+++|+ +||+++. +.|..+.+.+.+.|++++
T Consensus 85 ------------------------I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 85 ------------------------LDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ------------------------CccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 4445988888 7999887 999999999999999886
No 95
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.22 E-value=5.7e-11 Score=109.87 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=72.6
Q ss_pred CCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011 104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 104 ~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
.+.+||+|+|+||++||++|+.+.+.. .+++++++ ++.++.|++|+ ..++..++. ++++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~~~-------- 531 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KHYN-------- 531 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HHcC--------
Confidence 345689999999999999999877664 56777774 48888888762 233445555 4443
Q ss_pred cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE--EecCCCCChHHHHHHHHHHh
Q 026011 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI--ERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~--~~~~g~~~~~~l~~~l~~ll 243 (245)
+..+|+++++|+||+++ .++.|..+.+++.+.|+++.
T Consensus 532 --------------------------v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 532 --------------------------VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred --------------------------CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 33349999999999984 68889999999999998864
No 96
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.21 E-value=2.1e-11 Score=89.91 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=36.7
Q ss_pred CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
...+||+|||+||++||++|+.+.+.+.+..+.... +..++.|.+|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 345789999999999999999999999987665543 3567777766
No 97
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.21 E-value=9.5e-11 Score=95.66 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=68.7
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 187 (245)
+++++|+||++||++|+...|.++++.+++++. +.+..|.++ .. .+.. ++|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~--------~~---~~l~-~~~~--------------- 103 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT--------RA---LNLA-KRFA--------------- 103 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc--------cc---HHHH-HHcC---------------
Confidence 579999999999999999999999999999864 777777655 11 2233 3433
Q ss_pred cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
|..+|++++++ +|+++..+.|..+.+++.+.+++.+
T Consensus 104 -------------------I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 104 -------------------IKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred -------------------CCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 44459999996 7999888888888999988887664
No 98
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.21 E-value=4.6e-11 Score=86.77 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-----CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-----GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-----g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~ 181 (245)
.+++++|+||++||++|+...|.+.++.+++++. .+.+..|++| .. .+.+ ++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--------~~---~~l~-~~~~--------- 75 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--------KE---SDIA-DRYR--------- 75 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--------CC---HHHH-HhCC---------
Confidence 4679999999999999999999999999887532 3777788776 22 2233 4433
Q ss_pred CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCc-EEEecCCCCChHHHHHHH
Q 026011 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~-i~~~~~g~~~~~~l~~~l 239 (245)
|..+|+++++ ++|+ +...+.|..+.++|.+.|
T Consensus 76 -------------------------v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 -------------------------INKYPTLKLF-RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred -------------------------CCcCCEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence 3444988888 7888 457888888887776653
No 99
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.20 E-value=7.6e-11 Score=84.62 Aligned_cols=87 Identities=23% Similarity=0.283 Sum_probs=62.8
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
++++++|.||++||++|+...+.++++.+++++. .+.++.|.++. +....+. ++++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---------~~~~~~~-~~~~------------- 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK---------PEHDALK-EEYN------------- 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC---------CccHHHH-HhCC-------------
Confidence 5679999999999999999999999999998753 36666776651 0112222 3322
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
|..+|+++++ ++|+++.++.|..+.+++.+.
T Consensus 73 ---------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 73 ---------------------VKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred ---------------------CccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence 3344976555 789989999998888877654
No 100
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.17 E-value=1.7e-10 Score=81.87 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=60.8
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 187 (245)
+++++|+||++||++|+.+.+.|.++.+++. .++.++.|..+ . ..+.. ++++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~--------~---~~~~~-~~~~--------------- 65 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAE--------E---LPEIS-EKFE--------------- 65 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEccc--------c---CHHHH-HhcC---------------
Confidence 6899999999999999999999999999873 34788887544 1 12233 3333
Q ss_pred cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
+...|+++++ ++|+++.+..|. ++++|.+.|
T Consensus 66 -------------------i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 66 -------------------ITAVPTFVFF-RNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred -------------------CccccEEEEE-ECCEEEEEEeCC-CHHHHHHhh
Confidence 3334988888 589999998886 455666544
No 101
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.16 E-value=3.7e-10 Score=81.74 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
.+|+|||+|+++||++|+..-|.|.++.+++++. +.++.|.+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 6899999999999999999999999999999765 888888776
No 102
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.16 E-value=1.2e-10 Score=83.56 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=65.7
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
.+++++|.||++||++|+...+.+.++.++++. .++.++.|.++ .. ..++. ++++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--------~~--~~~~~-~~~~------------- 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD--------EA--NKDLA-KKYG------------- 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC--------Cc--chhhH-HhCC-------------
Confidence 357999999999999999999999999999873 34788888766 10 12223 3322
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
|.++|++++++++|+....+.|..+.+++.+.
T Consensus 73 ---------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 73 ---------------------VSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred ---------------------CCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 33449999998888888888888888777664
No 103
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.14 E-value=9.4e-11 Score=83.04 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhh-hCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
++++++|.||++||+.|+...+.+.++.+.++ +.++.++.|+++ . ..+.. ++++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~---~~~~~-~~~~------------- 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--------A---NNDLC-SEYG------------- 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--------c---hHHHH-HhCC-------------
Confidence 45699999999999999999999999999985 345888888766 2 22333 3433
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~ 238 (245)
|...|++++++++|+...++.|..+.+++.+.
T Consensus 69 ---------------------i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 69 ---------------------VRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred ---------------------CCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 33349999999888888889888777777654
No 104
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.12 E-value=6.2e-10 Score=79.74 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 187 (245)
+++++|.||++||++|+...+.+.++.+++.+. +.++.+.+| .. .+.. ++++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~--------~~---~~~~-~~~~--------------- 69 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD--------VH---QSLA-QQYG--------------- 69 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc--------ch---HHHH-HHCC---------------
Confidence 567999999999999999999999999998764 888888776 22 2222 3333
Q ss_pred cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
|...|++++++++.+....+.|..+.+++.+++
T Consensus 70 -------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 70 -------------------VRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred -------------------CCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 334499999976546667888888888777654
No 105
>PTZ00051 thioredoxin; Provisional
Probab=99.11 E-value=5.2e-10 Score=79.56 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+++++|+||++||++|+...+.+.++.+++.+ +.++.|+.| . ..+.+ ++++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~--------~---~~~~~-~~~~-------------- 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD--------E---LSEVA-EKEN-------------- 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc--------c---hHHHH-HHCC--------------
Confidence 468999999999999999999999999998753 788888765 1 12333 3433
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~ 236 (245)
|...|+++++ ++|+++.++.|. ..++|.
T Consensus 69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 69 --------------------ITSMPTFKVF-KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred --------------------CceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence 3334986655 899999999985 455543
No 106
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.10 E-value=4.6e-10 Score=82.26 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=56.3
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 187 (245)
+++++|+||++||++|+...|.|.++.+++.+ +.++.|..| + . +.+ ++++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~----------~-~-~l~-~~~~--------------- 73 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE----------K-A-FLV-NYLD--------------- 73 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch----------h-h-HHH-HhcC---------------
Confidence 58999999999999999999999999999864 788888765 1 1 333 4433
Q ss_pred cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~ 230 (245)
|..+|+++++ ++|+++.+..|..
T Consensus 74 -------------------i~~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 74 -------------------IKVLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred -------------------CCcCCEEEEE-ECCEEEEEEecHH
Confidence 3444977666 8899999887643
No 107
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.09 E-value=7.3e-10 Score=80.19 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCCEEEEEEecCC--CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 107 KGKVLLIVNVASR--CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 107 ~gk~vll~F~~t~--C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
.|.++||.||++| ||.|....|.|.++.++|.++ +.++.|++|+ .. +.+ .+|+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~--------~~---~la-~~f~------------ 80 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD--------EQ---ALA-ARFG------------ 80 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC--------CH---HHH-HHcC------------
Confidence 5678899999997 999999999999999999876 8888998872 22 333 4433
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~ 236 (245)
|..+|+++++ +||+++.+..|..+.+++.
T Consensus 81 ----------------------V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 81 ----------------------VLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred ----------------------CCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 4455987777 8999999999988887765
No 108
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.07 E-value=4.8e-10 Score=80.38 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=38.1
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D 150 (245)
.+++++|.||++||++|+...+.+.++.+++++ ..+.+..|+++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 358999999999999999999999999999877 34777778765
No 109
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.06 E-value=1.5e-09 Score=79.51 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=65.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
+++.++++||++||++|+...+.|.++.+++ + .+++..|..|. . .+.+ ++|+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~--------~---~~l~-~~~~-------------- 72 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDE--------D---KEKA-EKYG-------------- 72 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCc--------C---HHHH-HHcC--------------
Confidence 3457888899999999999999999999887 3 38888888772 1 1232 3333
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCC---CcEEEecCCCCChHHHHHHHHHHhh
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN---GKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~---G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
|.+.|++++++.+ |++ ++.|..+.+++.+.|+.+++
T Consensus 73 --------------------v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 73 --------------------VERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred --------------------CCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHh
Confidence 4445998888653 333 57777788899999999876
No 110
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.04 E-value=1.9e-09 Score=79.03 Aligned_cols=42 Identities=7% Similarity=-0.099 Sum_probs=37.7
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++++++|+||++||++|+...|.|.++.+++.+ +.++.|..|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 457999999999999999999999999998864 899999876
No 111
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.04 E-value=3e-09 Score=79.00 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=31.8
Q ss_pred CCCCCEEEEEEecCCCCCChHHHHH-H--HHHHHHhhhCCcEEEEEecC
Q 026011 105 KFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 105 ~~~gk~vll~F~~t~C~~C~~~~~~-l--~~l~~~~~~~g~~vv~Vs~D 150 (245)
.-+||+|||+|+++||+.|+.+-+. + .++.+.+.+ ++.+|-|..|
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~ 59 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE 59 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence 3468999999999999999977653 2 245555433 4777777655
No 112
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.03 E-value=1.3e-09 Score=97.53 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=68.2
Q ss_pred CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
.+++++||+||++||++|+.+.|.+.++.+++++.++.++.|.+|. .+ .+.+.++++
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~--------~~--~~~~~~~~~------------- 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG--------DQ--KEFAKQELQ------------- 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC--------Cc--cHHHHHHcC-------------
Confidence 3678999999999999999999999999999988789999998872 11 122212333
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC-CCCChHHHHHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP-PTTSPFQIEKDIQKL 242 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~-g~~~~~~l~~~l~~l 242 (245)
|..+|+++++.+++.-...|. |..+.+.|...|+.+
T Consensus 426 ---------------------I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 426 ---------------------LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ---------------------CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 344498888855543334565 467888888888764
No 113
>PTZ00102 disulphide isomerase; Provisional
Probab=99.00 E-value=9.2e-10 Score=100.04 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=76.5
Q ss_pred EEcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC-cEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011 93 VKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (245)
Q Consensus 93 l~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g-~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~ 170 (245)
++.+.|+.+.-. .-.||++||+||++||++|+...|.++++.+++++.+ +.+..|++|. .+.. + ++
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------~~~~---~-~~ 426 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------NETP---L-EE 426 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC--------Cccc---h-hc
Confidence 555556555432 2358899999999999999999999999999987643 6666676551 1100 1 11
Q ss_pred cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 171 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
++ +.++|++++++++|++..++.|..+.+++.+.|++..
T Consensus 427 ~~----------------------------------v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 427 FS----------------------------------WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred CC----------------------------------CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 11 3445999999988887778999999999999998765
No 114
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.99 E-value=4.8e-09 Score=71.92 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=59.1
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcch
Q 026011 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAP 190 (245)
Q Consensus 111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~ 190 (245)
.+..||++||++|+...+.|+++.++++.. +.++.|+.++ ..+ .. ++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~----~~-~~~~------------------ 50 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQ----KA-MEYG------------------ 50 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHH----HH-HHcC------------------
Confidence 466799999999999999999999998754 8888887762 221 12 2222
Q ss_pred hhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 191 VYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
+..+|++++ +|+. ++.|..+.+++.+.|+++|
T Consensus 51 ----------------v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 51 ----------------IMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred ----------------CccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence 334498765 6664 6678778899999888764
No 115
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.97 E-value=4.3e-09 Score=83.07 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=36.8
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+++|||+||++||++|+...+.|.++.++|.+ +.++-|++|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 45999999999999999999999999999863 889999765
No 116
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.96 E-value=1.8e-09 Score=79.46 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=39.9
Q ss_pred CCCCEEEEEEec-------CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 106 FKGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 106 ~~gk~vll~F~~-------t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
.+|++++|+||+ +||++|+...|.|.++.++++++ +.++.|.+|
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd 69 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVG 69 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcC
Confidence 358899999999 99999999999999999999754 899999887
No 117
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.96 E-value=3.1e-09 Score=86.12 Aligned_cols=146 Identities=17% Similarity=0.212 Sum_probs=102.2
Q ss_pred ccccccccCcccCeEEEcCCCCe-eecCCC-C-CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCC
Q 026011 78 VHATAATEKSLYDFTVKDIDGKD-VPLSKF-K-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG 154 (245)
Q Consensus 78 ~~~~~~~g~~~pdf~l~~~~G~~-v~l~~~-~-gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~ 154 (245)
....+..|..+||..+.+++|+. .++-|+ + ++|+||+|.+-.||+-...+.+++++.++|.+. .+++.|-+.+-..
T Consensus 69 l~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp 147 (237)
T PF00837_consen 69 LFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP 147 (237)
T ss_pred cccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence 44566789999999999999998 999998 3 579999999888999999999999999999986 6677665542111
Q ss_pred -------------CCCCChH---HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC
Q 026011 155 -------------QEPGSNP---EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 218 (245)
Q Consensus 155 -------------~~~~~~~---~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~ 218 (245)
+.+.+-+ ...+.. .++....|++ .|.........|+..- -.+||| +
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~--vD~mdN~~~~~YgA~P--------------eRlyIi-~ 209 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIV--VDTMDNNFNKAYGALP--------------ERLYII-Q 209 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEE--EEccCCHHHHHhCCCc--------------ceEEEE-E
Confidence 1112222 222223 2334678888 4444455667776421 246677 6
Q ss_pred CCcEEEecC-CC--CChHHHHHHHHHH
Q 026011 219 NGKVIERYP-PT--TSPFQIEKDIQKL 242 (245)
Q Consensus 219 ~G~i~~~~~-g~--~~~~~l~~~l~~l 242 (245)
||+|++... |. .+++++++.|++.
T Consensus 210 ~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 210 DGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 999987752 22 2678899988874
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.95 E-value=1.4e-08 Score=74.46 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEEecCCCCCChHHHHH-H--HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011 104 SKFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 104 ~~~~gk~vll~F~~t~C~~C~~~~~~-l--~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
+.-++|+++|+|++.||+.|...... | .++.+.+.+ .+.++.+.++ + .+..+++ +.++
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~~~-------- 73 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QSYK-------- 73 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HHhC--------
Confidence 33468999999999999999976653 2 234444443 3555555543 2 2234454 3333
Q ss_pred cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC-CCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~-~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
+...|++++||+ +|+++.+..|..+++++...|++.+.
T Consensus 74 --------------------------~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 74 --------------------------VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred --------------------------ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 222399999999 89999999999999999999988764
No 119
>PLN02309 5'-adenylylsulfate reductase
Probab=98.93 E-value=5.6e-09 Score=93.46 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
++|++||+||++||++|+.+.|.+.++.+++.+.++.++.|++|. . ..+.+.++++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~---~~~la~~~~~-------------- 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------D---QKEFAKQELQ-------------- 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------c---chHHHHhhCC--------------
Confidence 578999999999999999999999999999988789999998761 1 1233312222
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC-CCCChHHHHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP-PTTSPFQIEKDIQKL 242 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~-g~~~~~~l~~~l~~l 242 (245)
|+..|+++++.++.+....|. +..+.+.|..+|+.+
T Consensus 420 --------------------I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 --------------------LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred --------------------CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 444599988865554444565 456888899988875
No 120
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.92 E-value=9.6e-09 Score=71.17 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=61.8
Q ss_pred CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCc
Q 026011 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188 (245)
Q Consensus 109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~ 188 (245)
++++|.||++||+.|....+.++++.++ ..++.++.|+++ .. .+.. ++++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~--------~~---~~~~-~~~~---------------- 60 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD--------EN---PELA-EEYG---------------- 60 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC--------CC---hhHH-HhcC----------------
Confidence 7999999999999999999999999888 345999999876 21 1222 2322
Q ss_pred chhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
+...|+++++ ++|+++..+.|..+.+++.+.|
T Consensus 61 ------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 61 ------------------VRSIPTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ------------------cccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 3334988888 5788888888887777777655
No 121
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.92 E-value=9.6e-09 Score=82.18 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+++|||+||++||++|+...+.|.++.++|.+ +.++.|..|
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST 142 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence 46999999999999999999999999999964 889988754
No 122
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.92 E-value=7.4e-09 Score=76.00 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=36.3
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-C-cEEEEEecC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-G-FEILAFPCN 150 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g-~~vv~Vs~D 150 (245)
+++++|.||++||++|+.+.+.++++.+++++. + +.+..|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999988753 2 677777654
No 123
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.5e-08 Score=81.99 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=69.4
Q ss_pred ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (245)
Q Consensus 102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~ 181 (245)
+|+.-.+|.|+|+|++.||++|+...|.+.++..+|++ ..++-|.+| +.+..+ ..++
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~ta-a~~g--------- 71 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTA-ATNG--------- 71 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchh-hhcC---------
Confidence 34445678999999999999999999999999999954 788888665 334433 2222
Q ss_pred CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
|+..|+++++ .||+-+..+.|. ++.-|++.+.+.+
T Consensus 72 -------------------------V~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 72 -------------------------VNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred -------------------------cccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHHh
Confidence 4555865555 899999998886 5667888877764
No 124
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.80 E-value=3.9e-08 Score=70.42 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=65.7
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 187 (245)
|+++++.|++.||++|....+.+.++.++++++ +.++.|+.| +..+++ +.+++.-
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~-----------~~~~~~-~~~~i~~------------ 66 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD-----------DFGRHL-EYFGLKE------------ 66 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH-----------hhHHHH-HHcCCCh------------
Confidence 789999999999999999999999999999876 888888655 223444 5545310
Q ss_pred cchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHh
Q 026011 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
...|++++++.+ |+......+..+.+.+.+.|+.++
T Consensus 67 --------------------~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 67 --------------------EDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred --------------------hhCCEEEEEecccccccCCCccccCHHHHHHHHHhhC
Confidence 012888888763 554333344457888988887653
No 125
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.80 E-value=1.3e-08 Score=91.87 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=68.9
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
++++++|.||++||++|+...|.+.++.+.+.+.+ +.++.|.+++ . .+.+ ++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~------------ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE--------E---KDLA-QKYG------------ 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--------c---HHHH-HhCC------------
Confidence 56789999999999999999999999999887765 7788887761 1 2233 3433
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHh
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll 243 (245)
|...|+++++ ++|+. +..+.|..+.+.+.+.+++.+
T Consensus 73 ----------------------i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 73 ----------------------VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred ----------------------CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence 3334987777 67776 678888888888888887765
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=98.74 E-value=2.9e-08 Score=90.29 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=66.7
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
+++.++|.||++||++|+...|.+.++.+.+.+.+ +.+..|.++ .. .+.+ ++++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--------~~---~~l~-~~~~------------ 103 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--------EE---MELA-QEFG------------ 103 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC--------CC---HHHH-HhcC------------
Confidence 57899999999999999999999999998887543 666666655 11 2233 3433
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
|..+|++++++.++. + .|.|..+.+.+.+.+++++.
T Consensus 104 ----------------------i~~~Pt~~~~~~g~~-~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 104 ----------------------VRGYPTIKFFNKGNP-V-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred ----------------------CCcccEEEEEECCce-E-EecCCCCHHHHHHHHHHhhC
Confidence 334499999965544 4 78888899999999888753
No 127
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.71 E-value=6.7e-08 Score=65.57 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=29.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V 147 (245)
.|.||++||++|....+.+.++.+++..+ ++++-|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v 36 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV 36 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe
Confidence 37899999999999999999999998654 677666
No 128
>PTZ00062 glutaredoxin; Provisional
Probab=98.68 E-value=1.3e-07 Score=76.09 Aligned_cols=76 Identities=11% Similarity=-0.031 Sum_probs=58.7
Q ss_pred CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCc
Q 026011 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188 (245)
Q Consensus 109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~ 188 (245)
+.+|++||++||++|+.+.+.|.++.++|.+ +.++.|..| ++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d--------------------~~---------------- 59 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA--------------------DA---------------- 59 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc--------------------cC----------------
Confidence 4678999999999999999999999999965 788877421 11
Q ss_pred chhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
|..+|+++++ ++|+++.++.|. ++.++...++++
T Consensus 60 ------------------V~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~ 93 (204)
T PTZ00062 60 ------------------NNEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRGW 93 (204)
T ss_pred ------------------cccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHHH
Confidence 3444988877 799999999886 466666666554
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.67 E-value=1.3e-07 Score=77.12 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=64.6
Q ss_pred CCCCCEEEEEEec---CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011 105 KFKGKVLLIVNVA---SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (245)
Q Consensus 105 ~~~gk~vll~F~~---t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~ 181 (245)
..++...++.|++ +||++|+...|.+.++.+++.+ +++..+.+|. ++..+.+ ++|+
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~---------~~~~~l~-~~~~--------- 74 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT---------PEDKEEA-EKYG--------- 74 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC---------cccHHHH-HHcC---------
Confidence 3455555666777 9999999999999999998843 6666666551 1123333 4433
Q ss_pred CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE-EecCCCCChHHHHHHHHHHh
Q 026011 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~-~~~~g~~~~~~l~~~l~~ll 243 (245)
|..+|+++++ ++|+.+ .++.|..+.+++.+.|+.++
T Consensus 75 -------------------------V~~~Pt~~~f-~~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 75 -------------------------VERVPTTIIL-EEGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred -------------------------CCccCEEEEE-eCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 4445988887 467776 48889888888888888775
No 130
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.63 E-value=2e-07 Score=75.90 Aligned_cols=101 Identities=24% Similarity=0.236 Sum_probs=71.3
Q ss_pred eecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
-.+.++.+++-|++|+...|++|..+.|.|+.+.++| |+.|+.||+|.-+.+ .||...
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~------------------~fp~~~- 170 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP------------------SFPNPR- 170 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc------------------CCCCCC-
Confidence 3445667788999999999999999999999999987 599999999831100 111110
Q ss_pred cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC-cEEEecCCCCChHHHHHHH
Q 026011 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G-~i~~~~~g~~~~~~l~~~l 239 (245)
.+ ....+.++ |..+|++||+++++ ++.-...|..+.++|.+.|
T Consensus 171 --~~-~g~~~~l~-------------v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 --PD-PGQAKRLG-------------VKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred --CC-HHHHHHcC-------------CCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 00 11111222 55669999999988 6666678888888887754
No 131
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.58 E-value=4.2e-07 Score=67.72 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCCCEEEEEEecCCCCCChHHHHHH
Q 026011 106 FKGKVLLIVNVASRCGLTPSNYSEL 130 (245)
Q Consensus 106 ~~gk~vll~F~~t~C~~C~~~~~~l 130 (245)
-+||+|+|+|+++||++|+..-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 3689999999999999999877654
No 132
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.57 E-value=4.2e-07 Score=75.51 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=74.8
Q ss_pred ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (245)
Q Consensus 102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~ 181 (245)
.+.++.+++-|++|+...|+.|....|.|+.+.++| |+.|+.||+|.-+.+ .||... .
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p------------------~fp~~~-~ 201 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIP------------------GLPNSR-S 201 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCC------------------CCCCcc-C
Confidence 344556789999999999999999999999999987 599999999931111 122210 0
Q ss_pred CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHhh
Q 026011 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
| .| ....++ |..+|++||++++ +++.-...|..+.++|.+.|..++.
T Consensus 202 d-~g--qa~~l~-------------v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 202 D-SG--QAQHLG-------------VKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred C-hH--HHHhcC-------------CccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 1 00 111111 5556999999998 6666677899999999998877653
No 133
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.55 E-value=2e-07 Score=84.17 Aligned_cols=89 Identities=21% Similarity=0.159 Sum_probs=67.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-C-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-Q-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
.++.+||.||++||++|+...|.++++.+.+++ . ++.++.|+++. .+ .. .
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~--------n~----~~--~-------------- 414 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA--------ND----VP--P-------------- 414 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC--------Cc----cC--C--------------
Confidence 478999999999999999999999999999987 2 58888887651 10 00 0
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHh
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll 243 (245)
++ +..+|++++++++++. ...+.|..+.+.+.+.|++..
T Consensus 415 -------~~-------------i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 415 -------FE-------------VEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred -------CC-------------ccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 11 3444999999766652 356778888889998887653
No 134
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=7.5e-07 Score=66.76 Aligned_cols=132 Identities=23% Similarity=0.247 Sum_probs=88.9
Q ss_pred ccccCcccCeEEEcCCC-------CeeecCC-CCCCEEEE-EEecCCCCCChH-HHHHHHHHHHHhhhCCc-EEEEEecC
Q 026011 82 AATEKSLYDFTVKDIDG-------KDVPLSK-FKGKVLLI-VNVASRCGLTPS-NYSELSHLYEKYKTQGF-EILAFPCN 150 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G-------~~v~l~~-~~gk~vll-~F~~t~C~~C~~-~~~~l~~l~~~~~~~g~-~vv~Vs~D 150 (245)
..+|+++|..+++...+ ..++..+ ++||.|+| -..+.+.|.|.. ++|...+++++++++|+ +|+.||+|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 35799999988887522 2344445 48875544 455889999986 89999999999999998 58889988
Q ss_pred CCCCCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011 151 QFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (245)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g 228 (245)
+...+..|. +..+.. ..++ .|.++. ..+..+.+-...+ +|..+...+.-.|| +||.|.+.+..
T Consensus 83 --------D~FVm~AWa-k~~g~~~~I~fi--~Dg~ge-FTk~~Gm~~d~~~--~g~G~RS~RYsmvV-~nGvV~~~~iE 147 (165)
T COG0678 83 --------DAFVMNAWA-KSQGGEGNIKFI--PDGNGE-FTKAMGMLVDKSD--LGFGVRSWRYSMVV-ENGVVEKLFIE 147 (165)
T ss_pred --------cHHHHHHHH-HhcCCCccEEEe--cCCCch-hhhhcCceeeccc--CCcceeeeeEEEEE-eCCeEEEEEec
Confidence 889999999 444443 4455 444443 3444443332222 22235555666677 89999876643
No 135
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.52 E-value=1.1e-06 Score=61.46 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=38.2
Q ss_pred cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+.++++.+-+..|++.||++|+...+.++++.+++.+ +++..+..|
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 3467788888899999999999999999999987753 888888655
No 136
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.48 E-value=9e-07 Score=73.15 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=74.4
Q ss_pred cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (245)
Q Consensus 103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d 182 (245)
+.++.+++-|++||...|++|....|.|+.+.++| |+.|+.||+|.-+.+ .||... .|
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~p------------------~fp~~~-~d 195 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVINP------------------LLPDSR-TD 195 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCC------------------CCCCCc-cC
Confidence 45566778899999999999999999999999987 599999999931111 122210 01
Q ss_pred CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC-cEEEecCCCCChHHHHHHHHHHhh
Q 026011 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G-~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
.|. ...++ |...|++||++++. ++.-...|..+.++|.+.|..+..
T Consensus 196 -~gq--a~~l~-------------v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 196 -QGQ--AQRLG-------------VKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred -hhH--HHhcC-------------CcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 110 11111 55669999999985 776777899999999998877653
No 137
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.7e-07 Score=81.10 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=67.1
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
...+||.|||+||++|+...|++.+....+++. .+.+.-|... . . .+.+ .+|+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---------~-~-~~~~-~~y~------------- 96 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---------E-E-SDLA-SKYE------------- 96 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---------h-h-hhhH-hhhc-------------
Confidence 348899999999999999999999999999987 4666666432 2 2 4555 4544
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
|.+.|++-|. +||+....|.|....+.+..++++.
T Consensus 97 ---------------------v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 97 ---------------------VRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred ---------------------CCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHhc
Confidence 3334766665 8999888899988899998888764
No 138
>smart00594 UAS UAS domain.
Probab=98.44 E-value=1.9e-06 Score=63.88 Aligned_cols=89 Identities=8% Similarity=0.022 Sum_probs=61.2
Q ss_pred CCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011 106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (245)
Q Consensus 106 ~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d 182 (245)
-++|.++|+|++.||+.|....... .++.+.+.+ ++.++.+.++ +.+ ..+++ +.++
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~e-g~~l~-~~~~---------- 83 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSE-GQRVS-QFYK---------- 83 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------Chh-HHHHH-HhcC----------
Confidence 4689999999999999999877653 234444433 4666666544 222 23444 4433
Q ss_pred CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC-----cEEEecCCCCChHHHHHHH
Q 026011 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-----KVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G-----~i~~~~~g~~~~~~l~~~l 239 (245)
+...|++.++|++| +++.+..|..+++++...|
T Consensus 84 ------------------------~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 84 ------------------------LDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ------------------------cCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 22239999999998 5778889999998888765
No 139
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.38 E-value=8.3e-07 Score=80.40 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCCCCEEEEEEecCCCCCChHHHHHH-HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011 105 KFKGKVLLIVNVASRCGLTPSNYSEL-SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (245)
Q Consensus 105 ~~~gk~vll~F~~t~C~~C~~~~~~l-~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~ 183 (245)
+-++|||+|+|+|+||-.|+..-+.. .+.+...+-.|+..+-+.+. .++.++.+.. ++++.
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lL-k~~~~---------- 532 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALL-KRLGV---------- 532 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHH-HHcCC----------
Confidence 34567999999999999999765544 46666666666888887765 2455677777 56442
Q ss_pred CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
-+.|++++++++|+......|..+.+.+++.|++.
T Consensus 533 ------------------------~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 533 ------------------------FGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred ------------------------CCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 12299999999998877788888999999999875
No 140
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.35 E-value=3.6e-06 Score=68.70 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=55.7
Q ss_pred CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
.++.++|+.||++||++|+...+.++++..+.. .+.+..|..| .. .+.+ ++|+
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~--------~~---~~~~-~~~~------------- 183 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN--------EN---PDLA-EKYG------------- 183 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC--------CC---HHHH-HHhC-------------
Confidence 344566667999999999988888888877643 3777767654 21 2232 3333
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ 241 (245)
|.++|+++|. ++|+. +.|..+.+++.+.|++
T Consensus 184 ---------------------V~~vPtl~i~-~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 184 ---------------------VMSVPKIVIN-KGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred ---------------------CccCCEEEEe-cCCEE---EECCCCHHHHHHHHHh
Confidence 3444876664 66763 6677777888877764
No 141
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.27 E-value=5.1e-07 Score=67.59 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=49.9
Q ss_pred cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (245)
Q Consensus 103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d 182 (245)
++.+..+..++.|..+|||.|...+|.|.++.+..+ ++++=-|..| +..+.. ++|. .
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd-----------~~~el~-~~~l---------t 92 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRD-----------ENKELM-DQYL---------T 92 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HH-----------HHHHHT-TTTT---------T
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEec-----------CChhHH-HHHH---------h
Confidence 344566688889999999999999999999999865 3666556433 333333 2211 0
Q ss_pred CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
+| ...+|+++++|++|+++.++.+. |+.+.+.+
T Consensus 93 -~g---------------------~~~IP~~I~~d~~~~~lg~wger--P~~~~~~~ 125 (129)
T PF14595_consen 93 -NG---------------------GRSIPTFIFLDKDGKELGRWGER--PKEVQELV 125 (129)
T ss_dssp --S---------------------S--SSEEEEE-TT--EEEEEESS---HHHH---
T ss_pred -CC---------------------CeecCEEEEEcCCCCEeEEEcCC--CHHHhhcc
Confidence 00 23449999999999999998753 44444443
No 142
>PHA02125 thioredoxin-like protein
Probab=98.26 E-value=3.7e-06 Score=56.76 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=24.2
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.|+++||++|+...+.|.++. ++++-|+.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~ 33 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTD 33 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCC
Confidence 68899999999999888886541 455666544
No 143
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.25 E-value=3.4e-06 Score=57.94 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D 150 (245)
+||+++|+|+++||+.|+..-..+ .++.+.+.+ ++..+.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence 689999999999999999887766 344444554 4888888765
No 144
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.15 E-value=1.6e-05 Score=52.15 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=30.5
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+..|+++||++|+...+.|+++.+++. ++++..|.+|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 667999999999999999999876543 4888888766
No 145
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.1e-05 Score=57.90 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=86.3
Q ss_pred cccccccCcccC--eE-EEcCC----CCeeecCCC-CCCEEEE-EEecCCCCCC-hHHHHHHHHHHHHhhhCCc-EEEEE
Q 026011 79 HATAATEKSLYD--FT-VKDID----GKDVPLSKF-KGKVLLI-VNVASRCGLT-PSNYSELSHLYEKYKTQGF-EILAF 147 (245)
Q Consensus 79 ~~~~~~g~~~pd--f~-l~~~~----G~~v~l~~~-~gk~vll-~F~~t~C~~C-~~~~~~l~~l~~~~~~~g~-~vv~V 147 (245)
.++..+|+.+|+ ++ +.+.. +.++.++++ +||.++| -..+.+.|.| +.++|-+.+-.++++.+|+ +|+.|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 466789999999 44 22221 227788885 8875555 3447888884 6889999999999999998 58889
Q ss_pred ecCCCCCCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe
Q 026011 148 PCNQFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (245)
Q Consensus 148 s~D~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~ 225 (245)
|+| ++..++.|. +.++.+ .-++ .|.+|. ..+.+++........++ ++.-+.-.++ .||+|...
T Consensus 86 SVn--------DpFv~~aW~-k~~g~~~~V~f~--aD~~g~-ftk~lgleld~~d~~~g--~RS~R~a~vv-engkV~~~ 150 (171)
T KOG0541|consen 86 SVN--------DPFVMKAWA-KSLGANDHVKFV--ADPAGE-FTKSLGLELDLSDKLLG--VRSRRYALVV-ENGKVTVV 150 (171)
T ss_pred ecC--------cHHHHHHHH-hhcCccceEEEE--ecCCCc-eeeeccceeeeccccCc--cccccEEEEE-eCCeEEEE
Confidence 998 899999998 777764 3344 344443 33444432211111111 3332333444 79999876
Q ss_pred cCC
Q 026011 226 YPP 228 (245)
Q Consensus 226 ~~g 228 (245)
...
T Consensus 151 nvE 153 (171)
T KOG0541|consen 151 NVE 153 (171)
T ss_pred Eec
Confidence 643
No 146
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.09 E-value=0.00023 Score=54.33 Aligned_cols=143 Identities=21% Similarity=0.269 Sum_probs=85.9
Q ss_pred cccCcccCeEEEcC-----CC-----CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHH-hhhCCcEEEEE-ecC
Q 026011 83 ATEKSLYDFTVKDI-----DG-----KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK-YKTQGFEILAF-PCN 150 (245)
Q Consensus 83 ~~g~~~pdf~l~~~-----~G-----~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~-~~~~g~~vv~V-s~D 150 (245)
..|+++|...+.|- +| +.++...+.||+-+|...|-.-..-....|-+..+.+. |....++..+| +.|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 35677777776553 33 45666677999988877765544434444555555554 55555666554 443
Q ss_pred CCCCCCCCChHHHHHHHHHhcCCCcceee-ccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011 151 QFGGQEPGSNPEIKEFACTRFKAEFPIFD-KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~ 229 (245)
+ -...+.--++..+ ++-...||+-. -.|.+|. ....|+.-.. .-.++|+|++|+|++...|.
T Consensus 82 D---Ai~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~-~~~aW~L~~~------------~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 D---AIWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGV-VRKAWQLQEE------------SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred c---ccccchHHHHHHH-HHhhhhCCCcEEEEcCCCc-eeccccCCCC------------CceEEEEcCCccEEEEECCC
Confidence 1 1112333455555 44343444321 1455543 4555552111 14588999999999999999
Q ss_pred CChHHHHHHHHHH
Q 026011 230 TSPFQIEKDIQKL 242 (245)
Q Consensus 230 ~~~~~l~~~l~~l 242 (245)
++++++.+.|+-+
T Consensus 145 Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 145 LSPAEVQQVIALL 157 (160)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988754
No 147
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.09 E-value=1.9e-05 Score=49.89 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=32.1
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
|+.||..||+.|....+.+.++ ++.+.++.++.++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~ 37 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVD 37 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcC
Confidence 5789999999999999999998 455567999999987
No 148
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.08 E-value=6.7e-06 Score=58.77 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=41.2
Q ss_pred eecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
..+...+++++++.||+.||++|+...+.+.++.+++.. ++.++.|...
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344444588999999999999999999999999999986 4888888764
No 149
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.89 E-value=0.00031 Score=56.19 Aligned_cols=125 Identities=17% Similarity=0.284 Sum_probs=83.6
Q ss_pred ccCcccCeEEEcCCCCeeecCC-CCCC--EEEEEEe-----cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSK-FKGK--VLLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ 155 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~-~~gk--~vll~F~-----~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~ 155 (245)
.+..-.+..+...+|+ ++|.| |.|| .+|.+|. ...|+.|...+..++....-+..+++.++.||-.
T Consensus 42 ~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra----- 115 (211)
T PF05988_consen 42 MVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA----- 115 (211)
T ss_pred CccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC-----
Confidence 4444556888888886 88888 5787 3344444 4579999999999977777778888999999955
Q ss_pred CCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011 156 EPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (245)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g 228 (245)
..+++..|. ++.|-.+|+++..+ .....-|++-..+.+...| -.+|+-|. |+|.+.|..
T Consensus 116 ---P~~~i~afk-~rmGW~~pw~Ss~g---s~Fn~D~~~~~~~~~~~~g------~svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 116 ---PLEKIEAFK-RRMGWTFPWYSSYG---SDFNYDFGVSFDEGGEMPG------LSVFLRDG-GRVFHTYST 174 (211)
T ss_pred ---CHHHHHHHH-HhcCCCceEEEcCC---CcccccccceeccCCCcee------EEEEEEcC-CEEEEEeec
Confidence 789999998 88899999996533 3333333321111111110 23555554 888777643
No 150
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00011 Score=65.23 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+++.+|.||++||++|....+.+.++...+++. +.+..|.++ +..+.. ++|++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~-----------~~~~~~-~~y~i------------- 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD-----------EHKDLC-EKYGI------------- 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch-----------hhHHHH-HhcCC-------------
Confidence 4568999999999999999999999999998874 666666543 344444 45443
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
.+.|+..++.++ .....+.|..+.+.+.+.+.+.+
T Consensus 100 ---------------------~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~ 134 (383)
T KOG0191|consen 100 ---------------------QGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKEL 134 (383)
T ss_pred ---------------------ccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhh
Confidence 333777777555 43445566666777766665554
No 151
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.8e-05 Score=71.15 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=35.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEE
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAF 147 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~V 147 (245)
.+|-|||.||++||++|+...|.+++|.+.|++. ++.|.-+
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 5789999999999999999999999999999985 3444444
No 152
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.79 E-value=0.00021 Score=47.09 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=25.0
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+..|+++||++|....+.|.+ .|+.+..++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 456889999999987766643 46888888876
No 153
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.79 E-value=0.00013 Score=53.39 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=55.7
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
+.+.+||.|+++| |.|.. .|+..++..++.+. .+.|.-|.+|+. ...+..+.+ ++|++.-
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~------~~~~~~~L~-~~y~I~~--------- 78 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDY------GEKLNMELG-ERYKLDK--------- 78 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccc------cchhhHHHH-HHhCCCc---------
Confidence 4568999999955 44444 47777777776442 266666766521 111224454 6666420
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCc--EEEecCCC-CChHHHHHHHHH
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK--VIERYPPT-TSPFQIEKDIQK 241 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~--i~~~~~g~-~~~~~l~~~l~~ 241 (245)
+..|+++|+. +|. ....|.|. .+.+.|.+.|.+
T Consensus 79 -----------------------~gyPTl~lF~-~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 79 -----------------------ESYPVIYLFH-GGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred -----------------------CCCCEEEEEe-CCCcCCCccCCCCcccHHHHHHHHHh
Confidence 0237777774 453 22467785 788888888765
No 154
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.76 E-value=0.00021 Score=57.87 Aligned_cols=116 Identities=20% Similarity=0.355 Sum_probs=74.8
Q ss_pred CcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCc---EEEEEecCCCCCCCCCChHH
Q 026011 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF---EILAFPCNQFGGQEPGSNPE 162 (245)
Q Consensus 86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~---~vv~Vs~D~~~~~~~~~~~~ 162 (245)
...|.+++-+ .....+.+|+++||.+--.+|..|..++..|..|..++.+.|+ .++.|+-- +....
T Consensus 8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-------~~~s~ 76 (238)
T PF04592_consen 8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-------GEHSR 76 (238)
T ss_pred CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-------Ccchh
Confidence 4566666544 3345677899999999999999999999999999999988874 45555421 12222
Q ss_pred HH-HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011 163 IK-EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (245)
Q Consensus 163 ~~-~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~ 227 (245)
.. ..+.++....+|++.. +... ..+|..+.-.. --+||+|+-|++.+...
T Consensus 77 ~~~~~l~~r~~~~ipVyqq-~~~q---~dvW~~L~G~k-----------dD~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 77 LKYWELKRRVSEHIPVYQQ-DENQ---PDVWELLNGSK-----------DDFLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHHHHhCCCCCceecC-Cccc---cCHHHHhCCCc-----------CcEEEEeccCcEEEEec
Confidence 22 2222343445888742 1122 33444433211 23799999999987764
No 155
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.74 E-value=0.00026 Score=51.93 Aligned_cols=93 Identities=10% Similarity=0.050 Sum_probs=63.2
Q ss_pred CCCCCEEEEEEecC----CCCCChHHH--HHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 105 KFKGKVLLIVNVAS----RCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 105 ~~~gk~vll~F~~t----~C~~C~~~~--~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
.-++|.++|+++.+ ||..|+..+ +++.+..+ .++-+++.+++ +.+ ..+.+ ..++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~--------~~e-g~~la-~~l~------ 73 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVA--------KPE-GYRVS-QALR------ 73 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecC--------ChH-HHHHH-HHhC------
Confidence 34689999999988 777886554 44444332 34766776654 232 23333 2222
Q ss_pred eccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEE---CCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011 179 DKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV---DKNGKVIERYPPTTSPFQIEKDIQKLVVA 245 (245)
Q Consensus 179 ~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~li---D~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 245 (245)
+...|.+.+| +.+.+++.+..|..+++++...|+.++++
T Consensus 74 ----------------------------~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 74 ----------------------------ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred ----------------------------CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2223888888 77778899999999999999999988753
No 156
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.58 E-value=0.00023 Score=59.69 Aligned_cols=89 Identities=13% Similarity=0.233 Sum_probs=60.2
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC---CcEEE-EEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ---GFEIL-AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~---g~~vv-~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~ 183 (245)
...|+|.|+|+||+..+...|.+.+-.+++++. |-.|. .|.+| . ..++.++|.+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd--------~----e~~ia~ky~I---------- 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD--------K----EDDIADKYHI---------- 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc--------h----hhHHhhhhcc----------
Confidence 468999999999999999999999877666543 22233 34433 1 2233255443
Q ss_pred CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEE-ecCCCCChHHHHHHHHHHh
Q 026011 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE-RYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~-~~~g~~~~~~l~~~l~~ll 243 (245)
.-+|++=|+ .+|.+.. .|.|..+.+.|.+.|++.+
T Consensus 71 ------------------------~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 71 ------------------------NKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred ------------------------ccCceeeee-eccchhhhhhccchhHHHHHHHHHHHh
Confidence 222665555 7888776 5788888888888887765
No 157
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0015 Score=49.69 Aligned_cols=105 Identities=23% Similarity=0.221 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011 104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 104 ~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
...+||+.++.|-...|+.|...-..+ .++++-+.+. +.++.+.... +.. + .|. +
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------skp-v-~f~------------~ 95 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------SKP-V-LFK------------V 95 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------Ccc-e-Eee------------c
Confidence 344789999999999999998665554 3455555554 6666665430 110 0 000 0
Q ss_pred cCC-CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011 181 VDV-NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 181 ~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~ 240 (245)
-+. ......++.+ +..++++|+.++.|++|+-+....|..+++++...++
T Consensus 96 g~kee~~s~~ELa~----------kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 96 GDKEEKMSTEELAQ----------KFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred CceeeeecHHHHHH----------HhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 000 0000112222 1127778999999999999999999999998776654
No 158
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.44 E-value=0.0013 Score=54.83 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=74.2
Q ss_pred ccCcccCeEEEcCCCCeeecCC-CCCCEEEEEEe-cCCCCCChHHH--HHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSK-FKGKVLLIVNV-ASRCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~-~~gk~vll~F~-~t~C~~C~~~~--~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
.....|++..++++|+.+++.+ ++||+.||..+ ..|-..|.... |.+.++... ....+++|-|++-
T Consensus 97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~-~~~~~q~v~In~~--------- 166 (252)
T PF05176_consen 97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQE-PYGRVQIVEINLI--------- 166 (252)
T ss_pred hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhC-CCCceEEEEEecc---------
Confidence 3446899999999999988866 69997776555 34433333222 222222221 1115899999874
Q ss_pred hHHHHHHHHHh------------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011 160 NPEIKEFACTR------------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (245)
Q Consensus 160 ~~~~~~~~~~~------------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~ 227 (245)
..-++.++..- .+..|-+..+ +.-...+.+..+.. -..+..+||||.+|+|++.-.
T Consensus 167 e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~-~~~~~~iRe~Lgi~-----------N~~~GYvyLVD~~grIRWags 234 (252)
T PF05176_consen 167 ENWLKSWLVKLFMGSLRKSIPEERHDRYFIVYR-GQLSDDIREALGIN-----------NSYVGYVYLVDPNGRIRWAGS 234 (252)
T ss_pred hHHHHHHHHHHHhhhhhccCCHHHCceEEEEeC-CcccHHHHHHhCCC-----------CCCcCeEEEECCCCeEEeCcc
Confidence 23334444211 0111211110 00000111111111 112256899999999999999
Q ss_pred CCCChHHHHHHHH
Q 026011 228 PTTSPFQIEKDIQ 240 (245)
Q Consensus 228 g~~~~~~l~~~l~ 240 (245)
|..++++++...+
T Consensus 235 G~At~~E~~~L~k 247 (252)
T PF05176_consen 235 GPATPEELESLWK 247 (252)
T ss_pred CCCCHHHHHHHHH
Confidence 9999988766544
No 159
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.42 E-value=0.00087 Score=44.75 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+..||++||++|+...+.|.++ |+.+-.|++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 5679999999999877766443 4555566665
No 160
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.35 E-value=0.0016 Score=47.43 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=57.0
Q ss_pred HHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhh-------------
Q 026011 130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK------------- 196 (245)
Q Consensus 130 l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~------------- 196 (245)
|.+...++++.|+++|.|.+. +.+.+++|+ +..+.++|++.|.+ ..+|+.+.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~D~~------~~lY~~lg~~~~~~~~~~~~~ 66 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYVDPE------RKLYKALGLKRGLKWSLLPPA 66 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEEeCc------HHHHHHhCCccccccCCCchH
Confidence 566778888899999999976 776799999 77888999886643 22222111
Q ss_pred -------------cc-cCCCC-CCccccceeEEEECCCCcEEEecC
Q 026011 197 -------------SS-AGGFL-GDLVKWNFEKFLVDKNGKVIERYP 227 (245)
Q Consensus 197 -------------~~-~~~~~-~~~i~~~P~~~liD~~G~i~~~~~ 227 (245)
.. ..+.. ...+......||+|++|+|++.|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 10 01111 233455578999999999998775
No 161
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.35 E-value=0.0019 Score=48.23 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=64.8
Q ss_pred CEEEEEEec--CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 109 KVLLIVNVA--SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 109 k~vll~F~~--t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
...+|+|-+ -.+|-+.-..-.|.++.++|.+..+.+..|++|+ . .+.+ .+|+
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~---~~LA-~~fg-------------- 88 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------S---EAIG-DRFG-------------- 88 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------C---HHHH-HHcC--------------
Confidence 355565553 3566677677788888888864448899998772 2 2233 4444
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
|..+|+++++ +||+++.+..|..+.+++.+.|+++|.
T Consensus 89 --------------------V~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 89 --------------------VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred --------------------CccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 4445987777 999999999999999999999999875
No 162
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.28 E-value=0.00089 Score=50.87 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=33.1
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
.++++|+.|+..+||+|....+.+.++..++++ ++++.+.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence 478899999999999999999999998877754 55555443
No 163
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.20 E-value=0.0018 Score=53.41 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=31.2
Q ss_pred CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
-.||.+|+.|.-..||+|+...+++.++.+ .|++|..+.+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~ 144 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAF 144 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEec
Confidence 367899999999999999999888876543 4677766544
No 164
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.17 E-value=0.001 Score=51.48 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=19.5
Q ss_pred CeeecCCCCCCEEEEEEecCCCCCChHHHH
Q 026011 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYS 128 (245)
Q Consensus 99 ~~v~l~~~~gk~vll~F~~t~C~~C~~~~~ 128 (245)
+.+....-++|+++|+++++||..|..+..
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 344445557899999999999999997653
No 165
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.15 E-value=0.0052 Score=51.36 Aligned_cols=124 Identities=11% Similarity=0.101 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHh--------cCCCccee
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--------FKAEFPIF 178 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~--------~~~~~p~~ 178 (245)
.+|.+|+.|.-..||+|+....++.++.+. . +++|..+.+-- ..+++.......++.+ +...+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~---l~~~S~~~a~ailca~d~~~a~~~~~~~~~~- 188 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGI---IKPDSPGKAAAILAAKDPAKALQEYEASGGK- 188 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccc---cCcchHHHHHHHHhccCHHHHHHHHHHhhhc-
Confidence 567889999999999999999888776553 1 26555443211 1123333222222111 1111100
Q ss_pred eccCCCCCCcchhhhhhhcc--cCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011 179 DKVDVNGPNTAPVYQFLKSS--AGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 179 ~d~d~~~~~~~~~~~~~~~~--~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~ 240 (245)
.+..............+... .+..+ .|+++|++|+.|.+|++ ....|..++++|.+.|.
T Consensus 189 ~~~~~~~~~~~~~~~~i~~n~~l~~~l--Gv~GTPaiv~~d~~G~~-~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 189 LGLKPPASIPAAVRKQLADNQKLMDDL--GANATPAIYYMDKDGTL-QQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHhC
Confidence 00000000000111111100 01111 27888999999999975 33457778888887764
No 166
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.15 E-value=0.00089 Score=56.17 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.1
Q ss_pred CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEE
Q 026011 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144 (245)
Q Consensus 109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~v 144 (245)
...+|+||++||.+|+..-|...++--++++-|+-|
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCce
Confidence 488999999999999999999988877777765443
No 167
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.08 E-value=0.0014 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.2
Q ss_pred ecCCCCCChHHHHHHHHHHHHhh
Q 026011 116 VASRCGLTPSNYSELSHLYEKYK 138 (245)
Q Consensus 116 ~~t~C~~C~~~~~~l~~l~~~~~ 138 (245)
+..+|+.|......+++..++++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG 28 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC
Confidence 57779999988888888888773
No 168
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.00061 Score=61.79 Aligned_cols=60 Identities=18% Similarity=0.378 Sum_probs=43.1
Q ss_pred CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC-ccee
Q 026011 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF 178 (245)
Q Consensus 109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~-~p~~ 178 (245)
+.-+|.|+++||+.|+...|.++++.+...+-. +.|-+|.+- .+.-... ++++++. ||.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~l-CRef~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKL-CREFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhh-HhhcCCCCCcee
Confidence 467899999999999999999999998887642 566677664 1222333 4777764 5554
No 169
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.00 E-value=0.0018 Score=44.01 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=31.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
|+.|+.+|||+|....+.|.++. ... .++++-|+.+ ....++.+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l 46 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYL 46 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHH
Confidence 46788999999999998888865 222 2677777654 1344555555
No 170
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.00 E-value=0.0097 Score=43.74 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=63.9
Q ss_pred cCCCCCCE-EEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC-CCChHHHHHHHHHhcCCCcceee
Q 026011 103 LSKFKGKV-LLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE-PGSNPEIKEFACTRFKAEFPIFD 179 (245)
Q Consensus 103 l~~~~gk~-vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~ 179 (245)
|+++++|- +||.|- ...-+.-..++..|.+-...+.++.+.++.|.-+...... .-+.....+.. ++|+++
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~----- 76 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIP----- 76 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCC-----
Confidence 55666652 333343 2333345667788888778888888888888543211110 01122222222 333321
Q ss_pred ccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 180 KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 180 d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
.+ ..+++||+|||.+..++....+.++|.+.|+..
T Consensus 77 -------------------~~---------~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 77 -------------------PG---------GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred -------------------CC---------ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 00 157899999999999998888999998888753
No 171
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.005 Score=54.67 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=34.6
Q ss_pred CEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEec
Q 026011 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPC 149 (245)
Q Consensus 109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~ 149 (245)
...++.|++.||++|+...+.+.++...++. .++++..+..
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 4788899999999999999999999998874 4577777754
No 172
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.67 E-value=0.0084 Score=46.83 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=34.9
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
.+++.|+.|+...||+|....+.+.++.+++.++ +.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcCC
Confidence 6789999999999999999999999999988543 66655543
No 173
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.64 E-value=0.0053 Score=45.09 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCCCEEEEEEec-------CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 106 FKGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 106 ~~gk~vll~F~~-------t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
-.|++++|.|.+ +|||.|....|.+++..+...+ +..+|.|.+-
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 356788888884 4999999999999998887554 5888888764
No 174
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.45 E-value=0.0073 Score=50.79 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=34.9
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.+|||+||-..++.|...-..|..|..+|.. ++++.|...
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 345899999999999999999999999999987 899998754
No 175
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.046 Score=44.00 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=61.8
Q ss_pred cCeEEEcCCCCeeecCC-CCCCE--EEEEEe-----cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011 89 YDFTVKDIDGKDVPLSK-FKGKV--LLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (245)
Q Consensus 89 pdf~l~~~~G~~v~l~~-~~gk~--vll~F~-----~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~ 160 (245)
-+..+...+| +.+|.| |.||- +|..|. ...|+.|...+.++.-...-+...++.++.||-- ..
T Consensus 53 K~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl 123 (247)
T COG4312 53 KDYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PL 123 (247)
T ss_pred ceeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cH
Confidence 3566666777 568877 47773 333332 3469999999888877777777778999999854 67
Q ss_pred HHHHHHHHHhcCCCcceeeccC
Q 026011 161 PEIKEFACTRFKAEFPIFDKVD 182 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~d~d 182 (245)
+++..|- ++.|-.||+++..+
T Consensus 124 ~~l~~~k-~rmGW~f~w~Ss~~ 144 (247)
T COG4312 124 EELVAYK-RRMGWQFPWVSSTD 144 (247)
T ss_pred HHHHHHH-HhcCCcceeEeccC
Confidence 8888887 78899999986544
No 176
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.30 E-value=0.0078 Score=48.25 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=25.8
Q ss_pred eecCCCCCCEEEEEEecCCCCCChHHHHHHHH
Q 026011 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSH 132 (245)
Q Consensus 101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~ 132 (245)
+.+..-.+++.|+.|....||+|+...+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 44433357899999999999999999888876
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.18 E-value=0.025 Score=52.75 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
++..+-.|..++||.|+.....++++..+.. +++.-.|..
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~ 515 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDV 515 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEEC
Confidence 3444556789999999998899988888765 366655543
No 178
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.01 E-value=0.038 Score=39.54 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=50.3
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
..++++|+=..|.||.......++++.++...+. +.+..|.+- ..-.+.+.+.+++++..
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~H----------- 77 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVKH----------- 77 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--------------
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCCc-----------
Confidence 4679888888999999999999999999888765 777777664 34455555546666421
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~ 226 (245)
..|-.+|| +||++++.-
T Consensus 78 ----------------------eSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 78 ----------------------ESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp -----------------------SSEEEEE-ETTEEEEEE
T ss_pred ----------------------CCCcEEEE-ECCEEEEEC
Confidence 12878888 899998754
No 179
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.086 Score=41.47 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=44.9
Q ss_pred EcCCCCeeecCCC-CCC-EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011 94 KDIDGKDVPLSKF-KGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (245)
Q Consensus 94 ~~~~G~~v~l~~~-~gk-~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs 148 (245)
.+..|+.+.+.++ +.+ .||...--..|-.|+.+...|.++..-+++.|+.+|+|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5678899999886 444 555555589999999999999999888888899999985
No 180
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.91 E-value=0.028 Score=38.47 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=30.2
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
|..|..+|||.|......|+++..++ .|+.+.-|+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence 56688999999999999999998765 35777777765
No 181
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.44 E-value=0.09 Score=48.61 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=30.4
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V 147 (245)
.++.-+..|....||+|+.....++++..+.+ ++..-.|
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 44555778889999999999999988888655 3666666
No 182
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.35 E-value=0.04 Score=42.20 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=39.6
Q ss_pred eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHh--hhCCcEEEEEecC
Q 026011 100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY--KTQGFEILAFPCN 150 (245)
Q Consensus 100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~--~~~g~~vv~Vs~D 150 (245)
.+.+-+-.++++|+.|+...||+|....+.+.++.+++ .++ +.++...+.
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~-v~~~~~~~~ 55 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGK-VKFVFRPVP 55 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTT-EEEEEEESS
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCc-eEEEEEEcc
Confidence 34566667889999999999999999999999999998 443 888888764
No 183
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.95 E-value=0.12 Score=33.50 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=23.2
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.|+..||+.|......|.+ .|+.+..+.+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 456789999999976655543 45777777776
No 184
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.83 E-value=0.084 Score=33.41 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=24.1
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.|...|||.|......| .+.|+.+-.+.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence 4568899999999776666 3456777777776
No 185
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.077 Score=38.64 Aligned_cols=47 Identities=11% Similarity=0.194 Sum_probs=35.9
Q ss_pred cCCC-CCCEEEEEEec--------CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 103 LSKF-KGKVLLIVNVA--------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 103 l~~~-~gk~vll~F~~--------t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++++ +|+.+.+.|.+ +|||.|....|.+.+..+...+ ++.+|.|-+-
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 3444 67777788873 5999999999999998886555 4888888654
No 186
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.025 Score=45.54 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=38.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+.+..||.|++.|.+-|....|.+.++..+|...++.+=.|.+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG 186 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG 186 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence 34588999999999999999999999999999888887777554
No 187
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.68 E-value=0.22 Score=46.09 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V 147 (245)
.++.-+..|....||+|+.....++++..+.+ ++..-.|
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i 154 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI 154 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE
Confidence 45566778899999999998888988888765 3665555
No 188
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.55 E-value=0.1 Score=35.04 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=24.7
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
|+.|...|||.|......|.++.. .++++-|..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 456789999999988877776543 2566767655
No 189
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=1.3 Score=32.71 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=41.2
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
..|.|+|-|.-.|-|.|..+-..|.++.+...+ +.+|.+. +.+++..|. +-|++..
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylv----------dideV~~~~-~~~~l~~ 77 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLV----------DIDEVPDFV-KMYELYD 77 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEE----------ecchhhhhh-hhhcccC
Confidence 457999999999999999999999999998876 4444442 233566666 5555543
No 190
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.10 E-value=0.17 Score=34.81 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=26.2
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.|..+|||+|......|.++..++. ++.+.-+.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 456779999999988888877655432 3556566554
No 191
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=1.4 Score=36.37 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=37.8
Q ss_pred EcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCc
Q 026011 94 KDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF 142 (245)
Q Consensus 94 ~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~ 142 (245)
...+++...+.+..++++++.|.-..||+|...++.+.+.+...++..+
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~ 118 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRL 118 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCce
Confidence 3456666666666678999999999999999999999987777665433
No 192
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.83 E-value=0.18 Score=32.42 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=23.0
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.|..+|||.|......|.+. ++.+.-++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECC
Confidence 4567899999999877776543 3666666665
No 193
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.81 E-value=0.32 Score=31.98 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=23.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+..|..++||.|......|++ .|+.+-.+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 456788999999977766654 45777777766
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.67 E-value=0.55 Score=42.26 Aligned_cols=71 Identities=7% Similarity=0.114 Sum_probs=54.0
Q ss_pred cccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 79 HATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 79 ~~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
.++...++.+-.+.+.-.+|+.+.|.+++|..-+|...++- .+|...+...+...+++.++|+-||-|..+
T Consensus 267 ~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 267 MSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 44555667777777776678899999999974444344333 466778888889999999999999999876
No 195
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.60 E-value=0.26 Score=33.50 Aligned_cols=32 Identities=9% Similarity=0.327 Sum_probs=23.7
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+..|..+||+.|......| .++|+.+-.|.+|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECC
Confidence 4557789999999766655 3367887777776
No 196
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=93.31 E-value=0.49 Score=35.29 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=59.7
Q ss_pred CEEEEEEecC--CCC-CCh-HHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011 109 KVLLIVNVAS--RCG-LTP-SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (245)
Q Consensus 109 k~vll~F~~t--~C~-~C~-~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~ 184 (245)
+..+|.|.-. .|. -+. .....|.++.++|+++++.++.+..+ .... +. +.+++.- .
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~--------~~~~---~~-~~fgl~~--------~ 80 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAG--------AQLD---LE-EALNIGG--------F 80 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCc--------ccHH---HH-HHcCCCc--------c
Confidence 4666666532 233 233 44688889999999887888888765 2112 33 4444310 0
Q ss_pred CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe-cCCCCChHHHHHHHHHHhh
Q 026011 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER-YPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~-~~g~~~~~~l~~~l~~ll~ 244 (245)
..|.+++++.++. .|. +.|..+.+.+.+.++.+++
T Consensus 81 ------------------------~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 81 ------------------------GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred ------------------------CCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 1188899988765 555 6788899999999998864
No 197
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.096 Score=42.41 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=34.7
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+++.++++||+.||..|...-..+.++.+.+ .+++++.+..|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7889999999999999998777777777777 34888888665
No 198
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.22 E-value=0.069 Score=43.48 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs 148 (245)
.|. .||.|+++|||-|....+++..+..--.+.|+.|--|.
T Consensus 39 ~ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD 79 (248)
T KOG0913|consen 39 TGE-WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD 79 (248)
T ss_pred chH-HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence 454 46789999999999999999887776566666655543
No 199
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.13 E-value=0.31 Score=32.58 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=21.6
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
..|+.+|||.|......|++ .|+.+--++++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~ 32 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD 32 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence 45789999999987777753 34555555555
No 200
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.12 E-value=0.33 Score=32.60 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=24.5
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
.-|+.|..+||+.|......|. +.|+.+..+.++
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~ 41 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLG 41 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECC
Confidence 3355688999999998777764 245666667766
No 201
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.01 E-value=0.18 Score=40.67 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=33.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D 150 (245)
.|++.|+.|+.-.||+|....+.+ .++.+.+.+ ++.++.+.++
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEeccc
Confidence 578889999999999999887765 677777765 4777666553
No 202
>PHA03050 glutaredoxin; Provisional
Probab=92.59 E-value=0.26 Score=35.57 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=17.0
Q ss_pred EEEEecCCCCCChHHHHHHHHH
Q 026011 112 LIVNVASRCGLTPSNYSELSHL 133 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l 133 (245)
|+.|..+|||+|......|.++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 4558899999999777766554
No 203
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.65 Score=31.45 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=28.1
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
+..|.-++||+|......|. ++|+...-|.++. +..++.++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~ 45 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMV 45 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHH
Confidence 44567789999997766665 4566666665551 2444666666
No 204
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.24 E-value=0.82 Score=30.01 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=22.7
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
..|..++|+.|......|++ .|+.+-.+.++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 45778999999987766654 55777677665
No 205
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.84 E-value=0.51 Score=31.00 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=22.9
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
..|...+||.|......|.+ +|+.+-.+.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 45778999999988777753 46777667666
No 206
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.73 E-value=0.61 Score=30.54 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=22.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.|..+|||.|......|.+ .|+.+.-+.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 455778999999988666653 45666666665
No 207
>PHA03075 glutaredoxin-like protein; Provisional
Probab=91.66 E-value=1.3 Score=32.04 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=23.4
Q ss_pred CEEEEEEecCCCCCChHHHHHHHHHHHHh
Q 026011 109 KVLLIVNVASRCGLTPSNYSELSHLYEKY 137 (245)
Q Consensus 109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~ 137 (245)
|.+||-|.-+.|+.|...-..|.++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56888999999999998777776666554
No 208
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=91.54 E-value=0.92 Score=35.24 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCCE-EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011 107 KGKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (245)
Q Consensus 107 ~gk~-vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~ 185 (245)
.+++ +++.|..............|+++.++++++ +.++.+..+ ...+.+ +.+++.-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~-----------~~~~~~-~~~~i~~---------- 149 (184)
T PF13848_consen 93 SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD-----------DFPRLL-KYFGIDE---------- 149 (184)
T ss_dssp TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT-----------TTHHHH-HHTTTTT----------
T ss_pred CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH-----------HhHHHH-HHcCCCC----------
Confidence 3445 666665444555667777788888888765 777777654 122333 3433210
Q ss_pred CCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHH
Q 026011 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~ 240 (245)
...|.++++|.+ ++..+...+..+.+.+.+.++
T Consensus 150 ----------------------~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 150 ----------------------DDLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp ----------------------SSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred ----------------------ccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 112999999954 454344567778888888775
No 209
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=1.6 Score=41.18 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=20.0
Q ss_pred CCCCCEEEEEEecCCCCCChHHH
Q 026011 105 KFKGKVLLIVNVASRCGLTPSNY 127 (245)
Q Consensus 105 ~~~gk~vll~F~~t~C~~C~~~~ 127 (245)
.-++||++|...++||..|..+.
T Consensus 40 ~~edkPIflSIGys~CHWChVM~ 62 (667)
T COG1331 40 KEEDKPILLSIGYSTCHWCHVMA 62 (667)
T ss_pred HHhCCCEEEEeccccccchHHHh
Confidence 34789999999999999999765
No 210
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.46 E-value=0.95 Score=35.99 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=34.7
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
+..-||++||-..-..|+.+-.+|..+.+++-+ .++|-|+.
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvna 123 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNA 123 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEec
Confidence 455789999988888999999999999998865 78999864
No 211
>PRK10824 glutaredoxin-4; Provisional
Probab=90.30 E-value=0.81 Score=33.41 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=18.1
Q ss_pred CCCEEEEEEec----CCCCCChHHHHHHHHH
Q 026011 107 KGKVLLIVNVA----SRCGLTPSNYSELSHL 133 (245)
Q Consensus 107 ~gk~vll~F~~----t~C~~C~~~~~~l~~l 133 (245)
+.++|+|+--. +|||+|......|+++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 34566664443 5999999877766554
No 212
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.18 E-value=0.85 Score=32.23 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
.+| +.|..+|||+|......|.+ .|+..-.+.+|
T Consensus 8 ~~V-vvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid 41 (99)
T TIGR02189 8 KAV-VIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEID 41 (99)
T ss_pred CCE-EEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcC
Confidence 344 45788999999977665543 34544455555
No 213
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.96 E-value=1.4 Score=30.96 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=23.4
Q ss_pred CCCEEEEEEe----cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNV----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~----~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+.+.|+|+-. .+|||+|......|.+ .|+.+..+.++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~ 50 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL 50 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence 3456666544 3899999977666654 34555566654
No 214
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.84 E-value=1.4 Score=30.34 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=22.9
Q ss_pred CCCEEEEEEec----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++++|+|+--. +|||+|......|.+. |+.+..+.++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~ 46 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL 46 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence 45666664332 6999999776666543 4555555554
No 215
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=89.38 E-value=5 Score=28.92 Aligned_cols=31 Identities=6% Similarity=-0.103 Sum_probs=22.3
Q ss_pred eeEEEECCCCcEEEecCCCC-ChHHHHHHHHHH
Q 026011 211 FEKFLVDKNGKVIERYPPTT-SPFQIEKDIQKL 242 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~~-~~~~l~~~l~~l 242 (245)
|.+.|++.++ -.+...+.. +.+.|.+.++..
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 8888998776 334455666 778888888764
No 216
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.16 E-value=0.52 Score=32.02 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=29.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
|..|+...||.|....+.+.++.+...+ ++++..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4578899999999999999998755444 4777766654
No 217
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.14 E-value=2.5 Score=39.53 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=53.7
Q ss_pred CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (245)
Q Consensus 104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~ 183 (245)
.++++.+.|+.|+...|..|.....-|+++. ++.++ +++..+..+ +. .+.+ ++|+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~~~--------~~---~~~~-~~~~----------- 416 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAVNRG--------EE---PESE-TLPK----------- 416 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEeccc--------cc---hhhH-hhcC-----------
Confidence 3456677788888888888986666666655 34444 555444322 11 1112 3333
Q ss_pred CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHhh
Q 026011 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
+...|++.|+|.+|+- --+|.|...-.++...|..+++
T Consensus 417 -----------------------v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~ 455 (555)
T TIGR03143 417 -----------------------ITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYN 455 (555)
T ss_pred -----------------------CCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHH
Confidence 2223888888766631 1255565566677777776654
No 218
>PRK10638 glutaredoxin 3; Provisional
Probab=87.90 E-value=2.4 Score=28.59 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=22.2
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+..|...|||+|......|++ +|+...-+.+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 345668999999977766654 35665566665
No 219
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=85.72 E-value=1.6 Score=31.75 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=34.0
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (245)
Q Consensus 114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
.|+..+|+.|+.....|.+ +|+++..+++. .++.+.+++.+++ +..+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~ 51 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDG 51 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCC
Confidence 4678999999987766654 45666666654 2345778888888 665643
No 220
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=84.79 E-value=2.3 Score=30.40 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=32.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
..|+.++|+.|+....-|.+ +|+.+-.+.+. .++-+.+++.+++ ++.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~----~~p~s~~eL~~~l-~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYR----KDGLDAATLERWL-AKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCCHHHHHHHH-HHhC
Confidence 45779999999987766643 34544444433 2355889999998 5555
No 221
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=84.78 E-value=14 Score=31.36 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=31.7
Q ss_pred CcccCeEEEcCCCCeeecCCCC--CCEEEEEEecCCCCCChHHH-HHHHHHHHHhh--hCCcEEEEEecC
Q 026011 86 KSLYDFTVKDIDGKDVPLSKFK--GKVLLIVNVASRCGLTPSNY-SELSHLYEKYK--TQGFEILAFPCN 150 (245)
Q Consensus 86 ~~~pdf~l~~~~G~~v~l~~~~--gk~vll~F~~t~C~~C~~~~-~~l~~l~~~~~--~~g~~vv~Vs~D 150 (245)
..+|-|.+.|.+|..+-...-. ++.+.++|+ |+... ..|+++..... ..+++|+.|++|
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 4689999999999988776654 566666554 44444 33455555433 356999999876
No 222
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=84.08 E-value=18 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=33.9
Q ss_pred cCcccCeEEEc-CCCCeeecCCC---CCCEEEEEEecCCCCCChHHHHHHHHHHHHh
Q 026011 85 EKSLYDFTVKD-IDGKDVPLSKF---KGKVLLIVNVASRCGLTPSNYSELSHLYEKY 137 (245)
Q Consensus 85 g~~~pdf~l~~-~~G~~v~l~~~---~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~ 137 (245)
|..+|++.+.. .||+++.|.+. .|++-|+.|-..--+ ......|.++.+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~--~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAP--AQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCc--hhHHHHHHHHHHHH
Confidence 56788888888 68999998764 689988888754322 33334444444443
No 223
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.02 E-value=2.4 Score=30.59 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=31.9
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
.|..++|+.|+....-|.+ +|+.+..+.+. .++.+.+++.++. .+.+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence 4678999999977766544 45655555544 2245778888888 55454
No 224
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=83.96 E-value=1.2 Score=35.56 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=36.1
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs 148 (245)
+|-+|+|+.|...-|.|......|+.+.-+|++ +++|-|.
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 477999999999999999999999999999987 7888874
No 225
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=83.67 E-value=12 Score=31.50 Aligned_cols=132 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred cCcccCeEEEcCCCCeeecCCCCC-CEEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChH
Q 026011 85 EKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNP 161 (245)
Q Consensus 85 g~~~pdf~l~~~~G~~v~l~~~~g-k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~ 161 (245)
=+.+|-|++.|.+|+.+-.+.-.| +.+-+++. . -...-..|.++.++-.+ .+++|+.|+.|
T Consensus 79 L~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-~----qedA~afL~~lk~~~p~l~~~~kV~pvsL~----------- 142 (270)
T TIGR00995 79 LAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCF-R----QEDAEAFLAQLRKRKPEVGSQAKVVPITLD----------- 142 (270)
T ss_pred hcCCceEEEEcCCCCeEEEECCCCCceEEEEEC-C----HHHHHHHHHHHHhhCccccCCceEEEEEHH-----------
Confidence 346899999999999887765545 44444222 1 11123344555444332 35899999887
Q ss_pred HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHH
Q 026011 162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~ 240 (245)
++.+.. ..++.|.++- + ...+....+.+.....+..|-.+-.. ..+.|.++++- +-.|- +.+++...|+
T Consensus 143 ~vYkl~--~e~l~F~fiP--~--~~qV~~A~~ll~~~~~~~~GVPlF~~-~~Lti~~~n~~~iP~FF---~Kedlq~~L~ 212 (270)
T TIGR00995 143 QVYKLK--VEGIGFRFLP--D--PAQIKNALELPAANSEYFDGVPVFQS-GLLVVQKKNERYCPVYF---SKEDIEQELS 212 (270)
T ss_pred HHHHHh--hcCccEEEeC--C--HHHHHHHHHHHhcCccCCCCccEEee-cceEEEeCCeEEEeeEe---eHHHHHHHHH
Confidence 233333 2346666662 2 12233333434211222222222211 23455454442 22222 6777777777
Q ss_pred HH
Q 026011 241 KL 242 (245)
Q Consensus 241 ~l 242 (245)
++
T Consensus 213 ~~ 214 (270)
T TIGR00995 213 KF 214 (270)
T ss_pred HH
Confidence 65
No 226
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=83.65 E-value=2.5 Score=32.26 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.9
Q ss_pred eeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 211 FEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
-.++++|++|+|.+...|.++..++.+.|..+
T Consensus 148 SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll 179 (184)
T COG3054 148 SAVVVLDKDGRVKFVKEGALTQAEVQQVIDLL 179 (184)
T ss_pred ceEEEEcCCCcEEEEecCCccHHHHHHHHHHH
Confidence 56899999999999999999888877766543
No 227
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=83.43 E-value=3.4 Score=29.89 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=33.8
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
..|+..+|+.|+.....|.+ +|+.+-.+.+. .++.+.+++.+++ +..+..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~ 52 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENG 52 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence 35668999999987666644 45666666654 2345788999998 555443
No 228
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=83.39 E-value=2.9 Score=29.63 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=31.1
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
..|..++|+.|+.....|++ +|+.+-.+.+. ..+.+.+++.++. .+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence 45778999999977665544 45554444443 2245778888887 5544
No 229
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=83.18 E-value=2.6 Score=31.46 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=32.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
..|...+|+.|+....-|. ++|+.+-.+.+. .++.+.+++.+++ +..+.
T Consensus 3 ~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~ 51 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIF----SSPLTIDEIKQIL-RMTED 51 (131)
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCCcEEeecc----CChhhHHHHHHHH-HHhcC
Confidence 4566899999998765553 345665555543 2345778888888 55443
No 230
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=83.14 E-value=8.7 Score=34.32 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=32.7
Q ss_pred cccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 207 i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
+..+|..|+|+..|+-+.+..|....++|...|++++
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred cccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 4445999999999999999999999999999988864
No 231
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=82.94 E-value=1.6 Score=29.49 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=36.5
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 179 (245)
|+.|....|+.|......|.++..+ .++++-.|.++ +.++ +. ++|+...|++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~--------~d~~---l~-~~Y~~~IPVl~ 54 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID--------EDPE---LF-EKYGYRIPVLH 54 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT--------TTHH---HH-HHSCTSTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC--------CCHH---HH-HHhcCCCCEEE
Confidence 5667789999999877777765443 34888888887 3333 44 68887777763
No 232
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=80.52 E-value=17 Score=26.15 Aligned_cols=34 Identities=6% Similarity=-0.092 Sum_probs=24.0
Q ss_pred eeEEEECCCCcEEEe-cCCCCChHHHHHHHHHHhh
Q 026011 211 FEKFLVDKNGKVIER-YPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 211 P~~~liD~~G~i~~~-~~g~~~~~~l~~~l~~ll~ 244 (245)
|.+.+++-++.-.+. ..+..+++.|.+.++..++
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 877888776533344 4566788899999988764
No 233
>PRK12559 transcriptional regulator Spx; Provisional
Probab=79.44 E-value=6.2 Score=29.43 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=32.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+..|...+|+.|+....-|.+ +|+.+-.+.+. .++-+.+++.+|+ +..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~----~~~~s~~el~~~l-~~~~ 50 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIV----SNSMTVDELKSIL-RLTE 50 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEee----CCcCCHHHHHHHH-HHcC
Confidence 345678999999987655543 45555555443 2355889999998 5533
No 234
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=2.9 Score=27.90 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=28.1
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
+.|++..||.|......|.++.-. .+.|-|. .+-..+++|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt---------~Sm~NlKrFl 45 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEIT---------ESMANLKRFL 45 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehh---------hhhhhHHHHH
Confidence 458899999999777776654322 4455553 3667788887
No 235
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=79.13 E-value=12 Score=27.91 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=34.3
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
..|+|+|-|.-.|-+.|..+=..|.+..++.++- ..|..|.+|
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4689999999999999999989999999988763 455566554
No 236
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=77.80 E-value=35 Score=27.50 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=24.9
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
-|..-.|.-|+..-..|.++.++ .++-.++..+|
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVD 37 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVD 37 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-S
T ss_pred EecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCC
Confidence 35588999999999999999887 35888888887
No 237
>PTZ00062 glutaredoxin; Provisional
Probab=76.47 E-value=8.2 Score=31.17 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCCEEEEEEec----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 107 ~gk~vll~F~~----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+.++|+|+--+ ++||+|+.....|++ .|+.+..+.++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 45577664443 588888876655553 35666666665
No 238
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=76.17 E-value=4.9 Score=32.98 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.5
Q ss_pred eEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 212 EKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 212 ~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
.+||||+.|+|++...|..+++++++.+
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L~ 277 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQLL 277 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHHH
Confidence 4799999999999999999888766543
No 239
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=75.30 E-value=8.4 Score=27.55 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=26.8
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
..++|+| |--+||++|...-..|.+ .++....|-+|+. ....++++++
T Consensus 12 ~~~~VVi-fSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~-----~~g~eiq~~l 59 (104)
T KOG1752|consen 12 SENPVVI-FSKSSCPYCHRAKELLSD-------LGVNPKVVELDED-----EDGSEIQKAL 59 (104)
T ss_pred hcCCEEE-EECCcCchHHHHHHHHHh-------CCCCCEEEEccCC-----CCcHHHHHHH
Confidence 3456544 778999999973333332 3344444444521 2334666666
No 240
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=74.20 E-value=9.8 Score=28.37 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=32.9
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
..|..++|+.|+....-| .++|+++-.+.+. .++-+.+++.+|+ +..+..
T Consensus 3 ~iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~----~~~~s~~eL~~~l-~~~~~~ 52 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWL-------NAHQLSYKEQNLG----KEPLTKEEILAIL-TKTENG 52 (132)
T ss_pred EEEeCCCCHHHHHHHHHH-------HHcCCCeEEEECC----CCCCCHHHHHHHH-HHhCCC
Confidence 346689999999765444 3345666555554 2355888999998 555543
No 241
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=73.64 E-value=37 Score=25.67 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=24.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
++.+..+.|+=|..-+..|+ .+|++|=.+..|
T Consensus 28 ~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~ 59 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD 59 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC
Confidence 56677999999997776663 478998888766
No 242
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=73.12 E-value=10 Score=30.36 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=39.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
-.+..|.-..|+.|...+..+.. .+..+.|..|-.+ .+++.+..|+ .+++++-..+
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA-~~~~Idp~~V 165 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWA-NRHQIDPAKV 165 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHH-HHcCCCHHHe
Confidence 34555667999999988777733 3445888877543 4789999999 7878764443
No 243
>PRK10026 arsenate reductase; Provisional
Probab=72.79 E-value=39 Score=25.58 Aligned_cols=50 Identities=10% Similarity=0.234 Sum_probs=32.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
+..|+...|..|+..+.-|.+. +..++++-+--+ +-+.+++.+|+ ++.+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~------ppt~~eL~~~l-~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET------PPTRDELVKLI-ADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC------CcCHHHHHHHH-HhCCC
Confidence 3456689999999887666542 222444444333 45889999999 56554
No 244
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=72.75 E-value=5.8 Score=33.06 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=28.3
Q ss_pred CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh
Q 026011 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139 (245)
Q Consensus 106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~ 139 (245)
..||+.+++..+-|||.|-.+-=.|-....+|+.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 3699999999999999999887777777777765
No 245
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=70.32 E-value=5.5 Score=34.54 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=32.2
Q ss_pred cccceeEEEECC-CCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 207 VKWNFEKFLVDK-NGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 207 i~~~P~~~liD~-~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
+...|.+.+||+ .|+-+.++.|...++++.+++.+.+.
T Consensus 152 ~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 152 ISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred ccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 555699999999 69988999888889999999888764
No 246
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=69.94 E-value=24 Score=27.44 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=43.8
Q ss_pred cccccccCcccCeEEEc-CCCCeeecCCC---CCCEEEEEEecCC-CCCChHHHHHHHHHH-------HHhhhCC-----
Q 026011 79 HATAATEKSLYDFTVKD-IDGKDVPLSKF---KGKVLLIVNVASR-CGLTPSNYSELSHLY-------EKYKTQG----- 141 (245)
Q Consensus 79 ~~~~~~g~~~pdf~l~~-~~G~~v~l~~~---~gk~vll~F~~t~-C~~C~~~~~~l~~l~-------~~~~~~g----- 141 (245)
...+.+|..+|+..+.. .||+++.|.+. .|++-|+.|-... .+.+...+..|.+.. .+|...+
T Consensus 27 a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 27 AGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp BTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred ccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 45678999999999988 79999999874 7898888887543 344444455555433 3444322
Q ss_pred -cEEEEEecC
Q 026011 142 -FEILAFPCN 150 (245)
Q Consensus 142 -~~vv~Vs~D 150 (245)
++++.|...
T Consensus 107 ~~~~~~I~~~ 116 (169)
T PF07976_consen 107 VFDVLLIHSS 116 (169)
T ss_dssp SEEEEEEESS
T ss_pred eeEEEEEecC
Confidence 788888743
No 247
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=69.37 E-value=33 Score=23.31 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V 147 (245)
.++++|-|+..+|. .....+.+..+.+++. +.+..+
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~ 52 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHT 52 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEE
Confidence 45777888888776 4567777777777653 554443
No 248
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=66.71 E-value=14 Score=26.29 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=21.6
Q ss_pred EecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011 115 NVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (245)
Q Consensus 115 F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V 147 (245)
||-.+||.|......+.+.- ....++++.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d---~~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD---RGGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC---CCCCEEEEEC
Confidence 67889999999888877661 1123777777
No 249
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=65.53 E-value=66 Score=30.75 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=35.8
Q ss_pred ccccccCcccCeEEEc-CCCCeeecCC-C--CCCEEEEEEecCC-CCCChHHHHHHH
Q 026011 80 ATAATEKSLYDFTVKD-IDGKDVPLSK-F--KGKVLLIVNVASR-CGLTPSNYSELS 131 (245)
Q Consensus 80 ~~~~~g~~~pdf~l~~-~~G~~v~l~~-~--~gk~vll~F~~t~-C~~C~~~~~~l~ 131 (245)
..+.+|..+|++.+.. .+++++.|.+ + .|++.|+.|-... .+.....+..+.
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~ 517 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALC 517 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHH
Confidence 4567999999999998 5888887764 3 6889988887532 234444444443
No 250
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=63.78 E-value=9.3 Score=27.47 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=44.2
Q ss_pred CCeeecCCCCC-CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC---CCCChHHHHHHHHHhcCC
Q 026011 98 GKDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ---EPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 98 G~~v~l~~~~g-k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~---~~~~~~~~~~~~~~~~~~ 173 (245)
.++-.+++|.+ .+-|+-|+ .|+.|+ -..+....+++.+.|+++|.++.=...+. .=...+.+.+.+.+++++
T Consensus 25 ~r~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi 100 (107)
T PF08821_consen 25 ERKGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGI 100 (107)
T ss_pred hccCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCC
Confidence 34456677765 46666664 566666 56677777778888999999875321111 112367777777555443
No 251
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=63.46 E-value=18 Score=27.47 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=30.4
Q ss_pred CCCCCEEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcE-EEEEecC
Q 026011 105 KFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFE-ILAFPCN 150 (245)
Q Consensus 105 ~~~gk~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~-vv~Vs~D 150 (245)
.||||++++ -|.+.--..-......|++..+.+++.|++ |+.|+.|
T Consensus 47 qfKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D 94 (142)
T PF10673_consen 47 QFKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSD 94 (142)
T ss_pred hcCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 479998765 333333233333445789999999999986 6777766
No 252
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=62.86 E-value=20 Score=27.96 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=45.3
Q ss_pred CEEEEEEecCCCC-CChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 109 KVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 109 k~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
|-+++++=.|=-+ .-....|++.+..++.++.|+.++-+|-+ +...+..++ ++++++|-+-
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi~~ 90 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFIYR 90 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCceeec
Confidence 4677777655333 22345689999999999999999999965 788888888 7877776443
No 253
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=62.55 E-value=17 Score=32.74 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=22.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
|+.|..+|||+|......|.+ +|+..-.|.+|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 456889999999977666544 45666666665
No 254
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=61.02 E-value=34 Score=24.42 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCC
Q 026011 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204 (245)
Q Consensus 125 ~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~ 204 (245)
....=|++..+++++.+-.-+.|+++ +.+.+++.. +- -...++. -..|.++++.++
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~--------t~~~l~~Lr-~l-apgl~l~---P~sgddLa~rL~----------- 90 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVE--------TAAALQRLR-AL-APGLPLL---PVSGDDLAERLG----------- 90 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH-HH-cCCCccc---CCCHHHHHHHhC-----------
Confidence 34556777788888877777777776 777776654 22 1222322 123444555444
Q ss_pred CccccceeEEEECCCC
Q 026011 205 DLVKWNFEKFLVDKNG 220 (245)
Q Consensus 205 ~~i~~~P~~~liD~~G 220 (245)
+.|+| ++|..+|
T Consensus 91 --l~hYP--vLit~tg 102 (105)
T TIGR03765 91 --LRHYP--VLITATG 102 (105)
T ss_pred --CCccc--EEEecCc
Confidence 77888 6777777
No 255
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=60.42 E-value=26 Score=26.56 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCC
Q 026011 124 PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL 203 (245)
Q Consensus 124 ~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~ 203 (245)
.....=|++..+++++.+-.-+.|+++ +.+.+++..+-.-++. +. -..|.++++.++
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~--------t~~~L~~Lr~lapgl~--l~---P~sgddLA~rL~---------- 128 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVA--------TEAALQRLRQLAPGLP--LL---PVSGDDLARRLG---------- 128 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHHHHcCCCe--ec---CCCHHHHHHHhC----------
Confidence 345566778888888877777777776 7777777642222332 22 224444555554
Q ss_pred CCccccceeEEEECCCCc
Q 026011 204 GDLVKWNFEKFLVDKNGK 221 (245)
Q Consensus 204 ~~~i~~~P~~~liD~~G~ 221 (245)
++|+| +||..+|.
T Consensus 129 ---l~HYP--vLIt~~gi 141 (142)
T PF11072_consen 129 ---LSHYP--VLITATGI 141 (142)
T ss_pred ---CCccc--EEeecCCc
Confidence 78888 56766663
No 256
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=58.98 E-value=22 Score=21.55 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=21.3
Q ss_pred EEEECCCCcEEEecCCCCCh--HHHHHHHHHHh
Q 026011 213 KFLVDKNGKVIERYPPTTSP--FQIEKDIQKLV 243 (245)
Q Consensus 213 ~~liD~~G~i~~~~~g~~~~--~~l~~~l~~ll 243 (245)
.|.|++||+|...-.|..-. .++.+.|+..|
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 37799999998877665433 35666666655
No 257
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=58.72 E-value=13 Score=29.01 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
.|.+|+..-||.|-...+.|.++.+++.+-.++...+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 3567788999999999999999999994433444445443
No 258
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=56.71 E-value=16 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=21.5
Q ss_pred cccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241 (245)
Q Consensus 207 i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ 241 (245)
|.++|+++| ||+.+ .+..+.+++.+.|++
T Consensus 134 i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 134 ITGTPTFFI---NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp -SSSSEEEE---TTCEE---ETTTSHHHHHHHHHH
T ss_pred CccccEEEE---CCEEe---CCCCCHHHHHHHHcC
Confidence 778898777 88874 555688888888874
No 259
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.28 E-value=61 Score=27.82 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=58.1
Q ss_pred ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (245)
Q Consensus 102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~ 181 (245)
.+.+..|+.|||- +..-+.-+. +..+|.++|..++-..++. +..++-.+.+ ++.|.-+-+..|.
T Consensus 32 ~~k~v~g~~vLIT--Ggg~GlGr~-------ialefa~rg~~~vl~Din~------~~~~etv~~~-~~~g~~~~y~cdi 95 (300)
T KOG1201|consen 32 PLKSVSGEIVLIT--GGGSGLGRL-------IALEFAKRGAKLVLWDINK------QGNEETVKEI-RKIGEAKAYTCDI 95 (300)
T ss_pred chhhccCCEEEEe--CCCchHHHH-------HHHHHHHhCCeEEEEeccc------cchHHHHHHH-HhcCceeEEEecC
Confidence 5567788888873 222222232 3335555666666655552 2444444444 3334333344333
Q ss_pred CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
. +.+++.+.-+.++.+.| +-.+||+.-|.+-....-..+.+++++-+
T Consensus 96 s-~~eei~~~a~~Vk~e~G----------~V~ILVNNAGI~~~~~ll~~~d~ei~k~~ 142 (300)
T KOG1201|consen 96 S-DREEIYRLAKKVKKEVG----------DVDILVNNAGIVTGKKLLDCSDEEIQKTF 142 (300)
T ss_pred C-CHHHHHHHHHHHHHhcC----------CceEEEeccccccCCCccCCCHHHHHHHH
Confidence 2 12223333334454444 55789988888865555555666776643
No 260
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=54.58 E-value=38 Score=24.38 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=32.8
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
..|+...|..|+....-|.+ .|+++..+.+- .++-+.+++.+++ +..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l-~~~g~ 50 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIF-AKLGL 50 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHH-HHcCC
Confidence 35668999999987766644 34555555433 2355889999998 66554
No 261
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=54.31 E-value=35 Score=25.57 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=22.8
Q ss_pred eeEEEECCCCcEEEecCC-CCChHHHHHHHHHHh
Q 026011 211 FEKFLVDKNGKVIERYPP-TTSPFQIEKDIQKLV 243 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g-~~~~~~l~~~l~~ll 243 (245)
|-+.++|.||++.....- .-+.+.+++.++.-+
T Consensus 118 P~l~llDadgk~kE~lsI~kWntdtl~eff~ekl 151 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESLSIDKWNTDTLEEFFREKL 151 (154)
T ss_pred CeeEeecCCCCccceeeecccChHHHHHHHHHHh
Confidence 888999999998755422 225667777766544
No 262
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=53.02 E-value=18 Score=24.34 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=20.6
Q ss_pred eeEEEECCCCcEEEec-CCCCChHHHHHHHHHH
Q 026011 211 FEKFLVDKNGKVIERY-PPTTSPFQIEKDIQKL 242 (245)
Q Consensus 211 P~~~liD~~G~i~~~~-~g~~~~~~l~~~l~~l 242 (245)
|.+.++|.+|+++.+. ....+.+++.+.|.+-
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 8999999999987664 3344778888887764
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.96 E-value=18 Score=28.25 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=25.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEE
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv 145 (245)
|.+|+-..||.|-...+.|.++.++++ .+++|.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 456778899999999999999999984 234443
No 264
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.88 E-value=1.5e+02 Score=25.95 Aligned_cols=111 Identities=14% Similarity=0.280 Sum_probs=64.0
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 186 (245)
.+||.++.|.+-.--.=.. .+.++...|+++|..|+-...|.|.. .-.++++.|. ++.+. +++... ....
T Consensus 136 ~~~p~Vil~vGVNG~GKTT---TIaKLA~~l~~~g~~VllaA~DTFRA---aAiEQL~~w~-er~gv--~vI~~~-~G~D 205 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTT---TIAKLAKYLKQQGKSVLLAAGDTFRA---AAIEQLEVWG-ERLGV--PVISGK-EGAD 205 (340)
T ss_pred CCCcEEEEEEecCCCchHh---HHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHH-HHhCC--eEEccC-CCCC
Confidence 4668777777543322222 35566667777889999999885522 2357788888 66554 555321 2233
Q ss_pred CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l 242 (245)
..+-.|+........ .--++|||--|+.. +...|++.|+++
T Consensus 206 pAaVafDAi~~Akar--------~~DvvliDTAGRLh-------nk~nLM~EL~KI 246 (340)
T COG0552 206 PAAVAFDAIQAAKAR--------GIDVVLIDTAGRLH-------NKKNLMDELKKI 246 (340)
T ss_pred cHHHHHHHHHHHHHc--------CCCEEEEeCccccc-------CchhHHHHHHHH
Confidence 344556644322111 13478999999972 233455555554
No 265
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=50.71 E-value=1.4e+02 Score=24.63 Aligned_cols=35 Identities=3% Similarity=0.064 Sum_probs=22.3
Q ss_pred HHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 135 EKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 135 ~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
++++++|+.|+-.+-- ....+.+++ ++.++..+++
T Consensus 29 ~~l~~~G~~~~iaTGR--------~~~~~~~~~-~~l~~~~~~I 63 (272)
T PRK15126 29 ARLRERDITLTFATGR--------HVLEMQHIL-GALSLDAYLI 63 (272)
T ss_pred HHHHHCCCEEEEECCC--------CHHHHHHHH-HHcCCCCcEE
Confidence 3445578888887643 566677777 6666654443
No 266
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=49.93 E-value=51 Score=23.77 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=30.4
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
..|..+.|..|+....-|.+. +..++++-+--+ +-+.+++++++ ++.+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~------p~s~~eL~~~l-~~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE------PWTAETLRPFF-GDLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC------CCCHHHHHHHH-HHcC
Confidence 356689999999776555432 122444444333 45889999998 5544
No 267
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=47.95 E-value=59 Score=23.67 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=6.0
Q ss_pred CCCCEEEEEEecCC
Q 026011 106 FKGKVLLIVNVASR 119 (245)
Q Consensus 106 ~~gk~vll~F~~t~ 119 (245)
++||.+.++-.+.|
T Consensus 78 ~~gk~~~vfgt~g~ 91 (140)
T TIGR01753 78 LGGKKVALFGSGDW 91 (140)
T ss_pred CCCCEEEEEecCCC
Confidence 34555444333333
No 268
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=46.97 E-value=19 Score=24.23 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=21.1
Q ss_pred EEEECCCCcEEEecCC-----CCChHHHHHHHHHHhh
Q 026011 213 KFLVDKNGKVIERYPP-----TTSPFQIEKDIQKLVV 244 (245)
Q Consensus 213 ~~liD~~G~i~~~~~g-----~~~~~~l~~~l~~ll~ 244 (245)
.+.||+||.|..-+.| ..+.+++++.|++.+.
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHH
Confidence 5789999999755544 3478888888887764
No 269
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=45.14 E-value=56 Score=19.68 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=24.1
Q ss_pred eeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 211 FEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
..+.|.+.||+|+....+..+...-++.|+.+.
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I~~Vk 38 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGIESVK 38 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHHHHHH
Confidence 456788999999998777778877777777653
No 270
>PRK12359 flavodoxin FldB; Provisional
Probab=44.66 E-value=76 Score=24.82 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=9.6
Q ss_pred CChHHHHHHHHHHh
Q 026011 230 TSPFQIEKDIQKLV 243 (245)
Q Consensus 230 ~~~~~l~~~l~~ll 243 (245)
.+.+++.++++++.
T Consensus 152 ~t~~ri~~W~~~~~ 165 (172)
T PRK12359 152 LSDERIQQWCEQIL 165 (172)
T ss_pred hhHHHHHHHHHHHH
Confidence 36677887777664
No 271
>PRK10853 putative reductase; Provisional
Probab=43.97 E-value=61 Score=23.56 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=32.6
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
..|....|..|+..+.-|.+ +|+.+..+..- ..+-+.+++.+|+ ++.++
T Consensus 3 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~----k~p~s~~eL~~~l-~~~g~ 51 (118)
T PRK10853 3 TLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYR----VDGLDSELLQGFI-DELGW 51 (118)
T ss_pred EEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehc----cCCcCHHHHHHHH-HHcCH
Confidence 35668999999987766643 35555555432 2345889999999 56554
No 272
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=43.91 E-value=1e+02 Score=23.45 Aligned_cols=25 Identities=4% Similarity=-0.213 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 119 ~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
+|+.|......|++ .++.+.-+.++
T Consensus 15 t~~~C~~ak~iL~~-------~~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILES-------FRVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHH-------CCCcEEEEECC
Confidence 89999866655543 34655556554
No 273
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=43.27 E-value=65 Score=23.04 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=31.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
..|+...|..|+..+.-|++ .|+.+..+.+- .++-+.+++.+++ +..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~~~t~~el~~~l-~~~~~ 50 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-------AGIEPEIVEYL----KTPPTAAELRELL-AKLGI 50 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----cCCcCHHHHHHHH-HHcCC
Confidence 35668999999987655543 34544444432 2245888999998 56553
No 274
>PRK10976 putative hydrolase; Provisional
Probab=42.29 E-value=1.9e+02 Score=23.69 Aligned_cols=36 Identities=3% Similarity=0.126 Sum_probs=22.3
Q ss_pred HHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 134 YEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 134 ~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
.++++++|+.++-.+-- ....+..++ ++.++..+++
T Consensus 28 i~~l~~~G~~~~iaTGR--------~~~~~~~~~-~~l~~~~~~I 63 (266)
T PRK10976 28 LKLLTARGIHFVFATGR--------HHVDVGQIR-DNLEIKSYMI 63 (266)
T ss_pred HHHHHHCCCEEEEEcCC--------ChHHHHHHH-HhcCCCCeEE
Confidence 34455678888887643 455666666 6666654443
No 275
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=42.12 E-value=2.9e+02 Score=25.64 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=25.3
Q ss_pred ccccCcccCeEEEcCCCCeeecCCCCC-CEEEEEE
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVN 115 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~g-k~vll~F 115 (245)
...|..+|+..+.+.+|....++++.| +.+||.|
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence 358999999998877665555666766 4888877
No 276
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=41.31 E-value=91 Score=22.98 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=31.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (245)
Q Consensus 112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~ 171 (245)
+..|+...|..|+....-|.+ +|+.+-.+.+- .++-+.+++++|+ ++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~----~~p~t~~eL~~~l-~~~ 50 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDIL----KEPWHADTLRPYF-GNK 50 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEecc----CCCcCHHHHHHHH-HHc
Confidence 445668999999987766643 35555554432 2345889999998 443
No 277
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=40.81 E-value=31 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=26.1
Q ss_pred EEEecCCCCCChH-------HHHHHHHHHHHhhhCCcEEEEEe
Q 026011 113 IVNVASRCGLTPS-------NYSELSHLYEKYKTQGFEILAFP 148 (245)
Q Consensus 113 l~F~~t~C~~C~~-------~~~~l~~l~~~~~~~g~~vv~Vs 148 (245)
|.|-+|.|..|.. .-.++.++.++|...++.||-=+
T Consensus 33 vvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ 75 (150)
T PF04723_consen 33 VVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGA 75 (150)
T ss_pred EEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecC
Confidence 4588999999964 44677888888887766555444
No 278
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=40.75 E-value=1.1e+02 Score=25.55 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=51.7
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcc
Q 026011 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTA 189 (245)
Q Consensus 110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~ 189 (245)
-+|| .....|+-.. .+..+..+|.++|+++|-|.-++. .+-.++.+.+ ......|-++.| |..-..-.
T Consensus 54 nvLL-~G~rGtGKSS----lVkall~~y~~~GLRlIev~k~~L-----~~l~~l~~~l-~~~~~kFIlf~D-DLsFe~~d 121 (249)
T PF05673_consen 54 NVLL-WGARGTGKSS----LVKALLNEYADQGLRLIEVSKEDL-----GDLPELLDLL-RDRPYKFILFCD-DLSFEEGD 121 (249)
T ss_pred ceEE-ecCCCCCHHH----HHHHHHHHHhhcCceEEEECHHHh-----ccHHHHHHHH-hcCCCCEEEEec-CCCCCCCc
Confidence 3444 4456666322 244466788889999999975521 2344555555 344556666644 22222234
Q ss_pred hhhhhhhcccCCCCCCccccceeEEEECCC
Q 026011 190 PVYQFLKSSAGGFLGDLVKWNFEKFLVDKN 219 (245)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~P~~~liD~~ 219 (245)
.-|+.++.-..|. +..-|..++|-..
T Consensus 122 ~~yk~LKs~LeGg----le~~P~NvliyAT 147 (249)
T PF05673_consen 122 TEYKALKSVLEGG----LEARPDNVLIYAT 147 (249)
T ss_pred HHHHHHHHHhcCc----cccCCCcEEEEEe
Confidence 4566666543332 4555776666443
No 279
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.10 E-value=52 Score=27.01 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=26.5
Q ss_pred ccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244 (245)
Q Consensus 206 ~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~ 244 (245)
.|..+|++++ +|++ ...|..+++.+...|+++++
T Consensus 181 gI~gVP~fv~---d~~~--~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 181 GIRGVPTFVF---DGKY--AVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred CCccCceEEE---cCcE--eecCCCCHHHHHHHHHHHHh
Confidence 5888897555 5665 56788899999999999875
No 280
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=37.89 E-value=1.3e+02 Score=22.66 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=26.0
Q ss_pred CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (245)
Q Consensus 108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs 148 (245)
.++-++.+|-..|+.|.....-|.+.- .+..+++..+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D---~~~~i~f~~~q 43 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRD---QGGRIRFAALQ 43 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhc---cCCcEEEEecc
Confidence 456677788999999998766665432 23346777764
No 281
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=37.45 E-value=39 Score=26.15 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=21.0
Q ss_pred cccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240 (245)
Q Consensus 207 i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~ 240 (245)
|.++|+++| +|+ +.+.|....+.+++.|+
T Consensus 165 v~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 165 VFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp CSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred CcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 666798777 666 56678778888888764
No 282
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=37.39 E-value=2.3e+02 Score=23.18 Aligned_cols=36 Identities=11% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 134 YEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 134 ~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
.++++++|+.|+-.+-- ....+..++ ++.++..+++
T Consensus 29 i~~~~~~G~~~~iaTGR--------~~~~~~~~~-~~l~~~~~~I 64 (272)
T PRK10530 29 LARAREAGYKVIIVTGR--------HHVAIHPFY-QALALDTPAI 64 (272)
T ss_pred HHHHHHCCCEEEEEcCC--------ChHHHHHHH-HhcCCCCCEE
Confidence 34455678887777633 455566666 6666554443
No 283
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=37.27 E-value=2.3e+02 Score=23.11 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=23.5
Q ss_pred HHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 133 LYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 133 l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
..+++.++|+.++-.+-. +...+.+.. ++.+...+++
T Consensus 24 ~i~~l~~~G~~~~iaTGR--------~~~~~~~~~-~~~~~~~~~I 60 (256)
T TIGR00099 24 ALAKLREKGIKVVLATGR--------PYKEVKNIL-KELGLDTPFI 60 (256)
T ss_pred HHHHHHHCCCeEEEEeCC--------CHHHHHHHH-HHcCCCCCEE
Confidence 334455678888888754 566777776 6666654443
No 284
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=37.10 E-value=1.5e+02 Score=23.07 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=25.0
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEE
Q 026011 114 VNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAF 147 (245)
Q Consensus 114 ~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~V 147 (245)
+|+-.-||.|-...+.|.++.++++. .+++|.-.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~ 37 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWR 37 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEe
Confidence 34567899999999999999999853 13555433
No 285
>PRK06184 hypothetical protein; Provisional
Probab=36.38 E-value=2.6e+02 Score=25.63 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=26.5
Q ss_pred ccccCcccCeEEEcCCCCeeecCC-CC-CCEEEEEEe
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLSK-FK-GKVLLIVNV 116 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~-~~-gk~vll~F~ 116 (245)
..+|..+|+..+.+.+|+.+++-| +. ++.+||.|-
T Consensus 386 ~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~ 422 (502)
T PRK06184 386 LRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFG 422 (502)
T ss_pred CCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEec
Confidence 457999999999877787776655 44 578888764
No 286
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=35.82 E-value=1e+02 Score=19.99 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHH
Q 026011 96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSEL 130 (245)
Q Consensus 96 ~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l 130 (245)
.+|..+.+-++++..+.|.|. --|..|....-.+
T Consensus 14 ~dGGdv~lv~v~~~~V~V~l~-GaC~gC~~s~~Tl 47 (68)
T PF01106_consen 14 SDGGDVELVDVDDGVVYVRLT-GACSGCPSSDMTL 47 (68)
T ss_dssp HTTEEEEEEEEETTEEEEEEE-SSCCSSCCHHHHH
T ss_pred hcCCcEEEEEecCCEEEEEEE-eCCCCCCCHHHHH
Confidence 367788888888877777774 4566676554445
No 287
>PRK06756 flavodoxin; Provisional
Probab=35.25 E-value=1.1e+02 Score=22.81 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=17.8
Q ss_pred CCCCCEEEEEEecCCCC--CChHHHHHHHHHHHHhhhCCcEEEE
Q 026011 105 KFKGKVLLIVNVASRCG--LTPSNYSELSHLYEKYKTQGFEILA 146 (245)
Q Consensus 105 ~~~gk~vll~F~~t~C~--~C~~~~~~l~~l~~~~~~~g~~vv~ 146 (245)
+++||++.++-.+.+.. .|. .+.++.+.+.+.|+++++
T Consensus 80 ~l~~k~~~~fgt~~~~y~~~~~----a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 80 DLTGKKAAVFGSCDSAYPKYGV----AVDILIEKLQERGAAVVL 119 (148)
T ss_pred CCCCCEEEEEeCCCCchHHHHH----HHHHHHHHHHHCCCEEcC
Confidence 45677765533333321 233 234444455555655544
No 288
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.35 E-value=89 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=18.6
Q ss_pred CCChHH-HHHHHHHHHHhhhCCcEEEEEec
Q 026011 121 GLTPSN-YSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 121 ~~C~~~-~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
++|..+ ...+.+..+++++.|++++....
T Consensus 33 GPCsie~~~~~~~~A~~lk~~g~~~~r~~~ 62 (266)
T PRK13398 33 GPCAVESEEQMVKVAEKLKELGVHMLRGGA 62 (266)
T ss_pred eCCcCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 466543 34556666777777777777763
No 289
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=34.26 E-value=1.2e+02 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.298 Sum_probs=31.8
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCc--EEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGF--EILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~--~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
-.|+.+.|..|+....-|+ +.|+ +++-+.-+ +-+.+++.+|+ +..+..+
T Consensus 4 tiy~~p~C~t~rka~~~L~-------~~gi~~~~~~y~~~------~~s~~eL~~~l-~~~g~~~ 54 (117)
T COG1393 4 TIYGNPNCSTCRKALAWLE-------EHGIEYTFIDYLKT------PPSREELKKIL-SKLGDGV 54 (117)
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCCcEEEEeecC------CCCHHHHHHHH-HHcCccH
Confidence 3466899999997765553 3444 44555433 44889999998 6655443
No 290
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.24 E-value=1.6e+02 Score=20.30 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=11.8
Q ss_pred eEEEECCCCcEEEec
Q 026011 212 EKFLVDKNGKVIERY 226 (245)
Q Consensus 212 ~~~liD~~G~i~~~~ 226 (245)
..++.|++|.++..+
T Consensus 110 ~~~~~DP~G~~iEl~ 124 (125)
T cd08352 110 FTFFYDPDGLPLELY 124 (125)
T ss_pred EEEEECCCCCEEEec
Confidence 468899999987653
No 291
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=34.10 E-value=2.6e+02 Score=28.01 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=31.7
Q ss_pred EEEEEEecCCCCCChHH----HHHHHHHHHHhhhCCcEEEEEecCC
Q 026011 110 VLLIVNVASRCGLTPSN----YSELSHLYEKYKTQGFEILAFPCNQ 151 (245)
Q Consensus 110 ~vll~F~~t~C~~C~~~----~~~l~~l~~~~~~~g~~vv~Vs~D~ 151 (245)
.....+-..+|+.|... +..|.++.++-+++|+.||++-+.+
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ig~~~p~ 831 (912)
T TIGR02171 786 WPVANFDATISDPGQQIINENMNSLKAFIDETAKKGVKVIGTIFPQ 831 (912)
T ss_pred cccccccccccCccHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 34455666778888544 5778888888889999999997753
No 292
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=33.90 E-value=1.8e+02 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=12.7
Q ss_pred eeEEEECCCCcEEEec
Q 026011 211 FEKFLVDKNGKVIERY 226 (245)
Q Consensus 211 P~~~liD~~G~i~~~~ 226 (245)
...|+-|++|.++...
T Consensus 124 r~~~~~DPdG~~iEl~ 139 (142)
T cd08353 124 RLCYIRGPEGILIELA 139 (142)
T ss_pred EEEEEECCCCCEEEee
Confidence 5678999999987643
No 293
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=32.93 E-value=1.7e+02 Score=20.21 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=15.2
Q ss_pred eEEEECCCCcEEEecCCC
Q 026011 212 EKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 212 ~~~liD~~G~i~~~~~g~ 229 (245)
..++.|++|..+..+.|.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 478999999999888764
No 294
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=32.54 E-value=2.2e+02 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011 125 SNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFAC 168 (245)
Q Consensus 125 ~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~ 168 (245)
.+..+|.+..+++.++ +.+|+.|.++. -..+.+++|+.
T Consensus 46 ~e~~~Leq~l~~L~~kt~~QiaVv~vpS------t~g~~IE~ya~ 84 (271)
T COG1512 46 AERGALEQQLADLEQKTGAQIAVVTVPS------TGGETIEQYAT 84 (271)
T ss_pred hhHHHHHHHHHHHHhccCCeEEEEEecC------CCCCCHHHHHH
Confidence 3445555555554433 45555554442 13466777773
No 295
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=31.94 E-value=1.1e+02 Score=24.79 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011 128 SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (245)
Q Consensus 128 ~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
|-+.++...++.+|.+++-||- .-..+.+++..+.++++
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSG---------GF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISG---------GFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcC---------ChHHHHHHHHHHhCCcH
Confidence 5566777888889999999973 45677777777777765
No 296
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=31.87 E-value=56 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=24.5
Q ss_pred EEEecCCCCCChH-------HHHHHHHHHHHhhhCCcEEEEE
Q 026011 113 IVNVASRCGLTPS-------NYSELSHLYEKYKTQGFEILAF 147 (245)
Q Consensus 113 l~F~~t~C~~C~~-------~~~~l~~l~~~~~~~g~~vv~V 147 (245)
|.|-+|-|..|.. .-.++.++.++|...++.||-=
T Consensus 34 vvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllG 75 (154)
T PRK13265 34 VVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILG 75 (154)
T ss_pred EEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEec
Confidence 4588999999963 3467777888887766554433
No 297
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=31.79 E-value=52 Score=28.32 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=13.7
Q ss_pred cCCCCCChHHHHHHHHHHHHhhh
Q 026011 117 ASRCGLTPSNYSELSHLYEKYKT 139 (245)
Q Consensus 117 ~t~C~~C~~~~~~l~~l~~~~~~ 139 (245)
.+|||.|- ....++.+.+.+.+
T Consensus 18 ~~~CpGCg-~~~i~~~i~~al~~ 39 (301)
T PRK05778 18 TTWCPGCG-NFGILNAIIQALAE 39 (301)
T ss_pred CCCCCCCC-ChHHHHHHHHHHHH
Confidence 56999997 33455555555544
No 298
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=31.72 E-value=1.5e+02 Score=24.51 Aligned_cols=37 Identities=11% Similarity=0.324 Sum_probs=27.5
Q ss_pred HHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC-ccee
Q 026011 133 LYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF 178 (245)
Q Consensus 133 l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~-~p~~ 178 (245)
++.++++.|+.||.+|.- +..++..+. +..+++ -|++
T Consensus 31 v~~el~d~G~~Vi~~SSK--------T~aE~~~l~-~~l~v~~~p~i 68 (274)
T COG3769 31 VLLELKDAGVPVILCSSK--------TRAEMLYLQ-KSLGVQGLPLI 68 (274)
T ss_pred HHHHHHHcCCeEEEeccc--------hHHHHHHHH-HhcCCCCCcee
Confidence 345667789999999865 777777776 777876 6666
No 299
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=31.58 E-value=2.4e+02 Score=21.68 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=15.7
Q ss_pred EEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 213 KFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 213 ~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
=++.|.+| -+.-..+.+++++.|
T Consensus 135 gV~l~~~g----C~~T~Vd~~~v~~~i 157 (158)
T PF01976_consen 135 GVLLDRPG----CINTDVDWEKVEEAI 157 (158)
T ss_pred EEEeCCCC----cCCCcccHHHHHHHh
Confidence 36788888 455555777777765
No 300
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=31.36 E-value=4.3e+02 Score=24.51 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=25.8
Q ss_pred ccccCcccCeEEEcCCCCeeecCCCCC-CEEEEEEec
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVA 117 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~g-k~vll~F~~ 117 (245)
..+|..+|+..+. .+|+.+.|.|+-| +.+||.|-.
T Consensus 427 ~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~ 462 (547)
T PRK08132 427 PVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGD 462 (547)
T ss_pred CCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecC
Confidence 4579999999887 4677778877645 588887653
No 301
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=30.76 E-value=1e+02 Score=22.91 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=28.7
Q ss_pred HHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026011 132 HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (245)
Q Consensus 132 ~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 179 (245)
++.++++++ ++|++++.. .+.+.+.+.+ ++|+..|-.+.
T Consensus 16 dVi~~~~d~-f~v~~Lsa~-------~n~~~L~~q~-~~f~p~~v~i~ 54 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAG-------SNIEKLAEQA-REFKPKYVVIA 54 (129)
T ss_dssp HHHHHCTTT-EEEEEEEES-------STHHHHHHHH-HHHT-SEEEES
T ss_pred HHHHhCCCc-eEEEEEEcC-------CCHHHHHHHH-HHhCCCEEEEc
Confidence 455666766 999999986 3778888887 78888877764
No 302
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=30.74 E-value=95 Score=27.13 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.4
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
.||||++.|-...=+.+...+..+++..++..-.|+-+|++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 6899988776654566777788888888776666788888864
No 303
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=30.73 E-value=1.3e+02 Score=20.97 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=21.3
Q ss_pred eeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 211 FEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
|.+-|.+++|++.|.. .++++..+.+++.+
T Consensus 49 PlV~V~~p~g~v~Y~~---V~~edv~~Iv~~~~ 78 (92)
T cd03063 49 PLVEVETPGGRVAYGP---VTPADVASLLDAGA 78 (92)
T ss_pred CEEEEEeCCCcEEEEe---CCHHHHHHHHHHHh
Confidence 7666777888765544 47888888777754
No 304
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=30.61 E-value=1e+02 Score=26.99 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHhhhC--------CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchh
Q 026011 120 CGLTPSNYSELSHLYEKYKTQ--------GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPV 191 (245)
Q Consensus 120 C~~C~~~~~~l~~l~~~~~~~--------g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~ 191 (245)
||.|-...-.+-+..++..++ .+.|.+--+| .+-+.+. .++++..+--
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVN--------GPGEak~---AdiGia~~~~------------- 319 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVN--------GPGEAKH---ADIGIAGGGK------------- 319 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEec--------CCcchhc---cceeeecCCC-------------
Q ss_pred hhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011 192 YQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 245 (245)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 245 (245)
|.-.++ .+|+++.+..+..-.|++.+.+++..++
T Consensus 320 -------------------~~~~~f-~~g~~~~~~~~~~~~eel~~~i~~~~~~ 353 (361)
T COG0821 320 -------------------GSGPVF-VKGEIIKKLPEEDIVEELEALIEAYAEE 353 (361)
T ss_pred -------------------CeeEEE-ECCeEEEecChhhHHHHHHHHHHHHHHH
No 305
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=30.21 E-value=2.3e+02 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhCCcEEEEEecCC
Q 026011 127 YSELSHLYEKYKTQGFEILAFPCNQ 151 (245)
Q Consensus 127 ~~~l~~l~~~~~~~g~~vv~Vs~D~ 151 (245)
...|.++..++.+.|+.|++|.+|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4566778888999999999999994
No 306
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=29.96 E-value=3e+02 Score=24.86 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCC-----CCCChHHHHHHHHHhcCCCcceeec
Q 026011 141 GFEILAFPCNQFGGQ-----EPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 141 g~~vv~Vs~D~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
|++++.++.+..+.. .+...+++.+.+ ++.+.++-+..|
T Consensus 195 G~~v~~~n~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~D 238 (443)
T PRK10887 195 GAEVIAIGCEPNGLNINDECGATDPEALQAAV-LAEKADLGIAFD 238 (443)
T ss_pred CCeEEEEeccCCCCCCCCCCCCCCHHHHHHHH-HhcCCCeeeEEC
Confidence 577777765422211 123456677776 556666666643
No 307
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=29.85 E-value=54 Score=25.60 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=24.7
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (245)
Q Consensus 114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V 147 (245)
.|.-+.|+.|-..-|.+.++..+++++ +++-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEE
Confidence 477899999999999999999999876 554443
No 308
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=29.41 E-value=1e+02 Score=21.81 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=28.4
Q ss_pred EecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcc
Q 026011 115 NVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP 176 (245)
Q Consensus 115 F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p 176 (245)
|....|..|+..+.-|. +.|+++..+.+- .++-+.+++.+++ +..+..+.
T Consensus 1 Y~~~~C~t~rka~~~L~-------~~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~~ 50 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLE-------ENGIEYEFIDYK----KEPLSREELRELL-SKLGNGPD 50 (110)
T ss_dssp EE-TT-HHHHHHHHHHH-------HTT--EEEEETT----TS---HHHHHHHH-HHHTSSGG
T ss_pred CcCCCCHHHHHHHHHHH-------HcCCCeEeehhh----hCCCCHHHHHHHH-HHhcccHH
Confidence 34567888886665553 356777777764 3345889999998 67665443
No 309
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.25 E-value=2.3e+02 Score=21.10 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.9
Q ss_pred EecCCCCCChHHHHHHHHHHHHhh
Q 026011 115 NVASRCGLTPSNYSELSHLYEKYK 138 (245)
Q Consensus 115 F~~t~C~~C~~~~~~l~~l~~~~~ 138 (245)
|++.-| .|..++..|+++.+.+.
T Consensus 54 i~Y~p~-~~~~~v~~L~~l~~~~~ 76 (130)
T PF11303_consen 54 ITYDPC-LPPDQVAKLKALAKSCL 76 (130)
T ss_pred EEECCC-CCHHHHHHHHHHHhccC
Confidence 344556 89999999999998854
No 310
>PF01295 Adenylate_cycl: Adenylate cyclase, class-I; InterPro: IPR000274 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria.; GO: 0004016 adenylate cyclase activity, 0006171 cAMP biosynthetic process
Probab=28.51 E-value=2.1e+02 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=26.6
Q ss_pred eeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 211 FEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
-.+||+|..|.+........+.+++.+.+....
T Consensus 529 ~~vYILDE~n~l~~y~~~~~~~~~lv~~i~~fy 561 (604)
T PF01295_consen 529 FNVYILDEKNSLEHYQQCDGSKEELVREINRFY 561 (604)
T ss_pred eEEEEEcCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 568999999999776666668888888887664
No 311
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.17 E-value=2e+02 Score=23.61 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=37.1
Q ss_pred CEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011 109 KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 109 k~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+.+-|++| -.-||.|-.--+.|.+...++... .+++..=+........+. ..+.+++..++|+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~-g~~~~~~l~~k~g 68 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPE-GLDRKEYLAQKYG 68 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcc-cccHHHHHHHHhC
Confidence 34556666 568999998899999999988743 345554444322222222 2234444445555
No 312
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=28.00 E-value=67 Score=27.43 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=9.7
Q ss_pred ChHHHHHHHHHHhh
Q 026011 231 SPFQIEKDIQKLVV 244 (245)
Q Consensus 231 ~~~~l~~~l~~ll~ 244 (245)
+++++.+.|++.++
T Consensus 161 ~~~eL~~ai~~Al~ 174 (287)
T TIGR02177 161 DVAHLKEIIKEAIN 174 (287)
T ss_pred CHHHHHHHHHHHHh
Confidence 56777777777654
No 313
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=27.94 E-value=2.5e+02 Score=26.64 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=42.7
Q ss_pred ccCcccCeEEEcCCCCeeecCCCCC--CEEEEEEecCCCCCChHHHHHHHHHHHHh-hhCCcEEEEEecC
Q 026011 84 TEKSLYDFTVKDIDGKDVPLSKFKG--KVLLIVNVASRCGLTPSNYSELSHLYEKY-KTQGFEILAFPCN 150 (245)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~g--k~vll~F~~t~C~~C~~~~~~l~~l~~~~-~~~g~~vv~Vs~D 150 (245)
.|.++-...+.|-+..-..-.-.++ ...+|.|.++.-=.-+..+|.|-+++..- -.+++.||++.-.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~ 130 (573)
T PLN02640 61 NGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYART 130 (573)
T ss_pred CCCcccceecccccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 4555555566553332222122333 36778888887767788999999998642 2246999999865
No 314
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=27.47 E-value=1.7e+02 Score=21.31 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=18.2
Q ss_pred eeEEEECCCCcEEEecCCCCCh
Q 026011 211 FEKFLVDKNGKVIERYPPTTSP 232 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~~~~ 232 (245)
...++.|++|.++....|....
T Consensus 102 ~~~~~~DPdGn~iEl~~~~~~~ 123 (139)
T PRK04101 102 KSIYFTDPDGHKFEFHTGTLQD 123 (139)
T ss_pred eEEEEECCCCCEEEEEeCCHHH
Confidence 5689999999999988886633
No 315
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=27.27 E-value=3.4e+02 Score=24.61 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=23.7
Q ss_pred CCcEEEEEecCCCCC-----CCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011 140 QGFEILAFPCNQFGG-----QEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (245)
Q Consensus 140 ~g~~vv~Vs~D~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~d~d 182 (245)
.|++++.++.+..+. +.+...+.+.+.+ .+.+.++-+..|.|
T Consensus 198 lG~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v-~~~~adlGia~DgD 244 (446)
T PRK14324 198 LGADVIVINDEPNGFNINENCGALHPENLAQEV-KRYRADIGFAFDGD 244 (446)
T ss_pred cCCeEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HhCCCCEEEEECCC
Confidence 467888776552211 1223566777776 56666666664433
No 316
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=26.93 E-value=31 Score=26.81 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=16.1
Q ss_pred ee-EEEECCCCcEEEecCCCCChHHHHHHH
Q 026011 211 FE-KFLVDKNGKVIERYPPTTSPFQIEKDI 239 (245)
Q Consensus 211 P~-~~liD~~G~i~~~~~g~~~~~~l~~~l 239 (245)
|+ .+|+|++|+++++.. +..++++.|
T Consensus 74 ptL~~IYD~~G~lLW~qr---~vP~l~~~I 100 (180)
T PF08918_consen 74 PTLVLIYDENGKLLWRQR---DVPELEKRI 100 (180)
T ss_dssp SEEEEEEETTS-EEEESS-----HHHHCCS
T ss_pred CeEEEEEcCCCcEEEecC---ccHHHHHhc
Confidence 44 578999999998875 333455444
No 317
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=26.73 E-value=61 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=19.0
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
.|...||+.|....-.|.+ ++..++++-|..
T Consensus 3 ly~~~~~p~~~rv~~~L~~-----~gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-----AGITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-----cCCCcEEEEeCC
Confidence 3567899999866555533 233356666643
No 318
>PRK11478 putative lyase; Provisional
Probab=26.66 E-value=2.3e+02 Score=19.84 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=12.6
Q ss_pred eeEEEECCCCcEEEec
Q 026011 211 FEKFLVDKNGKVIERY 226 (245)
Q Consensus 211 P~~~liD~~G~i~~~~ 226 (245)
...|+.|++|.++..+
T Consensus 112 ~~~~~~DPdG~~iEl~ 127 (129)
T PRK11478 112 RFTFFNDPDGLPLELY 127 (129)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4578999999987654
No 319
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=26.63 E-value=1.1e+02 Score=21.88 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=15.2
Q ss_pred eeEEEECCCCcEEEecCCCCCh
Q 026011 211 FEKFLVDKNGKVIERYPPTTSP 232 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~~~~ 232 (245)
|+++++ ++|+.+....|..+-
T Consensus 84 PaLvf~-R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 84 PALVFF-RDGRYLGAIEGIRDW 104 (107)
T ss_dssp SEEEEE-ETTEEEEEEESSSTH
T ss_pred CeEEEE-ECCEEEEEecCeecc
Confidence 877777 788888777665543
No 320
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=26.10 E-value=2.1e+02 Score=24.14 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCcccc
Q 026011 130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKW 209 (245)
Q Consensus 130 l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~ 209 (245)
...+..+|.++|..+|-|+-++. .+-..+-+.+ +...-.|.++.| |..-..-...|+.++....|. |..
T Consensus 102 VKA~~~e~~~~glrLVEV~k~dl-----~~Lp~l~~~L-r~~~~kFIlFcD-DLSFe~gd~~yK~LKs~LeG~----ve~ 170 (287)
T COG2607 102 VKALLNEYADEGLRLVEVDKEDL-----ATLPDLVELL-RARPEKFILFCD-DLSFEEGDDAYKALKSALEGG----VEG 170 (287)
T ss_pred HHHHHHHHHhcCCeEEEEcHHHH-----hhHHHHHHHH-hcCCceEEEEec-CCCCCCCchHHHHHHHHhcCC----ccc
Confidence 34455677778889888864410 1122233333 333445666643 222222344577666543322 555
Q ss_pred ceeEEEECCC
Q 026011 210 NFEKFLVDKN 219 (245)
Q Consensus 210 ~P~~~liD~~ 219 (245)
.|..+|+-..
T Consensus 171 rP~NVl~YAT 180 (287)
T COG2607 171 RPANVLFYAT 180 (287)
T ss_pred CCCeEEEEEe
Confidence 5777766543
No 321
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.09 E-value=2.5e+02 Score=23.66 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=10.3
Q ss_pred HHHHhhhCCcEEEEEec
Q 026011 133 LYEKYKTQGFEILAFPC 149 (245)
Q Consensus 133 l~~~~~~~g~~vv~Vs~ 149 (245)
+.+++.++|..+|-|.-
T Consensus 22 ~A~~lA~~g~~liLvaR 38 (265)
T COG0300 22 LAKQLARRGYNLILVAR 38 (265)
T ss_pred HHHHHHHCCCEEEEEeC
Confidence 44455566677777753
No 322
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.80 E-value=2.5e+02 Score=20.00 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=31.1
Q ss_pred CCCEEEEEEe----cCCCCCChHHHHHHHHHHHHhhhCC-cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 107 KGKVLLIVNV----ASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 107 ~gk~vll~F~----~t~C~~C~~~~~~l~~l~~~~~~~g-~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
+.++|+|+-= .+-|++.......|.. .| +++..|++= ..+++++-+ ++|. +||.+
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~-------~g~v~~~~vnVL--------~d~eiR~~l-k~~s-~WPT~ 72 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSA-------CGVVDFAYVDVL--------QDPEIRQGL-KEYS-NWPTF 72 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHH-------cCCcceeEEeec--------cCHHHHhcc-Hhhc-CCCCC
Confidence 4567766443 4567777766655543 34 567777664 335666665 4433 34444
No 323
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.30 E-value=2e+02 Score=19.30 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=10.4
Q ss_pred eeEEEECCCCcEEEe
Q 026011 211 FEKFLVDKNGKVIER 225 (245)
Q Consensus 211 P~~~liD~~G~i~~~ 225 (245)
...++.|++|.++..
T Consensus 93 ~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 678999999998653
No 324
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=25.07 E-value=2.4e+02 Score=19.56 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.2
Q ss_pred CCcEEEecCCCCChHHHHHHHHH
Q 026011 219 NGKVIERYPPTTSPFQIEKDIQK 241 (245)
Q Consensus 219 ~G~i~~~~~g~~~~~~l~~~l~~ 241 (245)
++.+ .|.|..+.+.|.++|+.
T Consensus 82 e~~~--~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 82 DSSV--KFDGDLDSSKIKKFIRE 102 (104)
T ss_pred cccc--cccCcCCHHHHHHHHHh
Confidence 4444 46777777788888764
No 325
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.97 E-value=5.3e+02 Score=23.45 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCCeeecCCCCCCEEEEEEecCC----CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011 97 DGKDVPLSKFKGKVLLIVNVASR----CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 97 ~G~~v~l~~~~gk~vll~F~~t~----C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+...-.+.--++|+.||.|.+-. ...|.... -.|+++|+.+.-|.-|.|.. .--++++.++ ++-+
T Consensus 88 dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA-------~y~kkkG~K~~LvcaDTFRa---gAfDQLkqnA-~k~~ 156 (483)
T KOG0780|consen 88 DPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLA-------YYYKKKGYKVALVCADTFRA---GAFDQLKQNA-TKAR 156 (483)
T ss_pred CCCCcccccccCCCcEEEEEeccCCCcceeHHHHH-------HHHHhcCCceeEEeeccccc---chHHHHHHHh-HhhC
Confidence 33333444457899888888432 22555333 34456889999998886533 2456777776 5545
Q ss_pred CC
Q 026011 173 AE 174 (245)
Q Consensus 173 ~~ 174 (245)
++
T Consensus 157 iP 158 (483)
T KOG0780|consen 157 VP 158 (483)
T ss_pred Ce
Confidence 43
No 326
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=24.84 E-value=1.5e+02 Score=20.23 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=21.1
Q ss_pred eeEEEECCCCcEEEec-CCCCC-hHHHHHHHHHHhh
Q 026011 211 FEKFLVDKNGKVIERY-PPTTS-PFQIEKDIQKLVV 244 (245)
Q Consensus 211 P~~~liD~~G~i~~~~-~g~~~-~~~l~~~l~~ll~ 244 (245)
|.++++|++|+-+--. .|..- ..++.+.|.++|.
T Consensus 39 PaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 39 PAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp -EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 9999999999876443 33333 6788888888764
No 327
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=24.59 E-value=2.6e+02 Score=19.78 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.1
Q ss_pred eeEEEECCCCcEEEecCCC
Q 026011 211 FEKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~ 229 (245)
-..++.|++|..+..+...
T Consensus 103 ~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 103 WSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eEEEEECCCCCEEEEEEcC
Confidence 4578999999998877544
No 328
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.46 E-value=1.2e+02 Score=24.24 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=27.3
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (245)
Q Consensus 113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs 148 (245)
+.||...|+.-...+..+.++..-.++.|+.|+.-.
T Consensus 43 v~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 43 VSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 456677777666777888888888888898887653
No 329
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=24.43 E-value=1.4e+02 Score=21.48 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCC---CCCCChHHHHHHHHHhcC
Q 026011 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG---QEPGSNPEIKEFACTRFK 172 (245)
Q Consensus 119 ~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~---~~~~~~~~~~~~~~~~~~ 172 (245)
.|+.-...+..++..+++| |+++++|+.|...- ..+.+.++..+++.+.|.
T Consensus 25 ~~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~ 78 (111)
T PF14062_consen 25 YCPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEHYA 78 (111)
T ss_pred CCCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555556666677777766 57888887763211 223356888888855544
No 330
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=24.24 E-value=1.1e+02 Score=23.59 Aligned_cols=44 Identities=18% Similarity=0.423 Sum_probs=29.7
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
-|+-+=.++.|+.|......-.+++++ ++ +..++++++.++|+-
T Consensus 104 ~Vvwd~Hg~~C~vCl~ia~~a~~~~~~--Gk------------------s~~eIR~~ID~kYk~ 147 (158)
T PF13798_consen 104 SVVWDDHGTRCGVCLDIAVQAVQMYQE--GK------------------SPKEIRQYIDEKYKE 147 (158)
T ss_pred ceeecccccccHHHHHHHHHHHHHHHc--CC------------------CHHHHHHHHHHHHHh
Confidence 344455589999999776555555543 22 778999999666653
No 331
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=24.09 E-value=3e+02 Score=20.36 Aligned_cols=31 Identities=6% Similarity=0.040 Sum_probs=16.7
Q ss_pred eeEEEECCCC--cEEEecCCCCChHHHHHHHHH
Q 026011 211 FEKFLVDKNG--KVIERYPPTTSPFQIEKDIQK 241 (245)
Q Consensus 211 P~~~liD~~G--~i~~~~~g~~~~~~l~~~l~~ 241 (245)
|.++|+-.+. -|.+-..+..+.+.|.+.+..
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKS 117 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHH
T ss_pred CEEEEecCCCCCCccCCccCCccHHHHHHHHHh
Confidence 5555554433 343333777788888887764
No 332
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.95 E-value=2.5e+02 Score=19.42 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=13.6
Q ss_pred eeEEEECCCCcEEEecC
Q 026011 211 FEKFLVDKNGKVIERYP 227 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~ 227 (245)
...|+.|++|..+..+.
T Consensus 102 ~~~~~~DPdG~~iEi~~ 118 (125)
T cd07255 102 EALYLSDPEGNGIEIYA 118 (125)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 45789999999987654
No 333
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=23.54 E-value=4.6e+02 Score=23.72 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCC-----CCCCChHHHHHHHHHhcCCCcceeecc
Q 026011 140 QGFEILAFPCNQFGG-----QEPGSNPEIKEFACTRFKAEFPIFDKV 181 (245)
Q Consensus 140 ~g~~vv~Vs~D~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~d~ 181 (245)
.|++++.++....+. +.+...+++.+.+ .+.+.++-+..|.
T Consensus 199 lG~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~Dg 244 (448)
T PRK14315 199 LGAEVITIGVEPNGFNINEECGSTHPEALAKKV-REVRADIGIALDG 244 (448)
T ss_pred cCCeEEEeccCCCCCCCCCCCCCCCHHHHHHHH-HHcCCCEEEEEcC
Confidence 356777776542111 1113456667776 5666666666443
No 334
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=23.36 E-value=1.5e+02 Score=24.44 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=21.3
Q ss_pred EEEEEEec--CCCC---CChHHH-HHHHHHHHHhhhCC
Q 026011 110 VLLIVNVA--SRCG---LTPSNY-SELSHLYEKYKTQG 141 (245)
Q Consensus 110 ~vll~F~~--t~C~---~C~~~~-~~l~~l~~~~~~~g 141 (245)
|..|.||+ -.|+ .|.+++ -.+.++|.+--++|
T Consensus 105 Pf~V~FyGa~~regdvwIcME~M~tSldkfy~~v~~~g 142 (282)
T KOG0984|consen 105 PFTVHFYGALFREGDVWICMELMDTSLDKFYRKVLKKG 142 (282)
T ss_pred CeEEEeehhhhccccEEEeHHHhhhhHHHHHHHHHhcC
Confidence 77888884 3566 788765 45667776655554
No 335
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.33 E-value=4.3e+02 Score=23.72 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCC---C--CCCChHHHHHHHHHhcCCCcceeec
Q 026011 141 GFEILAFPCNQFGG---Q--EPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 141 g~~vv~Vs~D~~~~---~--~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
|++++.++.+..+. + .++..+++.+.+ ++.+..+-+..|
T Consensus 193 g~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v-~~~~adlGia~D 236 (434)
T cd05802 193 GAEVIVINNAPDGLNINVNCGSTHPESLQKAV-LENGADLGIAFD 236 (434)
T ss_pred CCeEEEecCCCCCCCCCCCCCccCHHHHHHHH-HhcCCCEEEEEc
Confidence 67777776542111 1 123556666666 555555555533
No 336
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=23.23 E-value=1.2e+02 Score=21.99 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=21.7
Q ss_pred eecCCCCCCEEEEEEecCCCCCChHHHHH
Q 026011 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSE 129 (245)
Q Consensus 101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~ 129 (245)
+.+.+..|..++|.=-+.=|+.|+-.+..
T Consensus 59 l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~ 87 (118)
T PF14427_consen 59 LPLNQVPGDRMLIDGQYPPCNSCKGKMRR 87 (118)
T ss_pred cCccccCCceEEEeeecCCCchhHHHHHH
Confidence 44555669999998888999999955433
No 337
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.16 E-value=5.9e+02 Score=23.34 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=33.4
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
..+|.+|.+.+-.-..=......|...+++ +|..++-|++|.+ -+.-.++++... ++.++ |++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~---RpAA~eQL~~La-~q~~v--~~f 159 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTY---RPAAIEQLKQLA-EQVGV--PFF 159 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccC---ChHHHHHHHHHH-HHcCC--cee
Confidence 456777766644333333344455555554 5678899998842 112234444444 45444 444
No 338
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.10 E-value=3.7e+02 Score=20.96 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=33.0
Q ss_pred cccCeEEEcCCCCeeecCCC--CC-CEEEEEEecCCCCCCh-HHHHHHHHHHHHhhhCCc--EEEEEec
Q 026011 87 SLYDFTVKDIDGKDVPLSKF--KG-KVLLIVNVASRCGLTP-SNYSELSHLYEKYKTQGF--EILAFPC 149 (245)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~--~g-k~vll~F~~t~C~~C~-~~~~~l~~l~~~~~~~g~--~vv~Vs~ 149 (245)
-.|+..++++..=++....+ .| |.+++++=.+-+++=. ..-+++.+..+++++.+. .|+-||-
T Consensus 17 ~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSN 85 (168)
T PF09419_consen 17 LLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSN 85 (168)
T ss_pred cCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 46777777765433332113 34 5788888766665332 223455555555544432 3555554
No 339
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=23.08 E-value=36 Score=22.12 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=11.6
Q ss_pred eeEEEECCCCcEEEe
Q 026011 211 FEKFLVDKNGKVIER 225 (245)
Q Consensus 211 P~~~liD~~G~i~~~ 225 (245)
--.|.||+||++...
T Consensus 19 ~v~~~I~~~G~v~~~ 33 (79)
T PF03544_consen 19 VVEFTIDPDGRVSDV 33 (79)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred EEEEEEeCCCCEEEE
Confidence 346899999999753
No 340
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=23.00 E-value=4.2e+02 Score=21.62 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=35.9
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (245)
Q Consensus 111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (245)
+.++.=+|.+..=...-+...+..++.+++|+.++-++-. ....+.+++ ++.++..+++
T Consensus 6 i~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR--------~~~~~~~~~-~~l~~~~~~I 64 (264)
T COG0561 6 LAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGR--------PLPDVLSIL-EELGLDGPLI 64 (264)
T ss_pred EEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCC--------ChHHHHHHH-HHcCCCccEE
Confidence 3334444544433334455566666777889999888744 556777777 6766655444
No 341
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=22.98 E-value=6.2e+02 Score=23.58 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=38.7
Q ss_pred cCeEEEcCCCCe---eecCC---CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 89 YDFTVKDIDGKD---VPLSK---FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 89 pdf~l~~~~G~~---v~l~~---~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
|+-.+.++...+ |.+.. .+.|.++++ =+.--....+...|-++..+++++|+-+|.||.
T Consensus 139 ~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD--EPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH 203 (500)
T COG1129 139 PDTLVGDLSIAQRQMVEIARALSFDARVLILD--EPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203 (500)
T ss_pred hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc--CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 666666654432 22211 144555444 344446788999999999999999999999985
No 342
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=22.94 E-value=1e+02 Score=20.42 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=13.5
Q ss_pred eeEEEECCCCcEEEe
Q 026011 211 FEKFLVDKNGKVIER 225 (245)
Q Consensus 211 P~~~liD~~G~i~~~ 225 (245)
-..+|+|+||.++..
T Consensus 16 ~~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 16 RGAVLVDKDGLVIAS 30 (91)
T ss_dssp EEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCEEEE
Confidence 568999999999988
No 343
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=22.82 E-value=1.1e+02 Score=19.37 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=11.7
Q ss_pred eeEEEECCCCcEEEe
Q 026011 211 FEKFLVDKNGKVIER 225 (245)
Q Consensus 211 P~~~liD~~G~i~~~ 225 (245)
--.|.||++|++...
T Consensus 13 ~v~~~i~~~G~v~~~ 27 (74)
T TIGR01352 13 VVRFTVDADGRVTSV 27 (74)
T ss_pred EEEEEECCCCCEEEE
Confidence 346899999999754
No 344
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=22.81 E-value=76 Score=20.49 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred ccccCcccCeEEEcCCCCeeecCC
Q 026011 82 AATEKSLYDFTVKDIDGKDVPLSK 105 (245)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~ 105 (245)
-.+|+++.+.+++|..|+.++++.
T Consensus 30 gNvgQP~ENWElkDe~G~vlD~~k 53 (76)
T PF10790_consen 30 GNVGQPPENWELKDESGQVLDVNK 53 (76)
T ss_pred cccCCCcccceeeccCCcEeeccc
Confidence 357889999999999999888765
No 345
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=22.77 E-value=3.3e+02 Score=20.36 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011 128 SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (245)
Q Consensus 128 ~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
+.+.++.+.++++|+.++-||.. ....++..+ +++++
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~--------~~~~i~~~~-~~~g~ 112 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGG--------FDFFVEPVA-EKLGI 112 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCC--------cHHHHHHHH-HHcCC
Confidence 45566666777778888877643 344455555 55554
No 346
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=22.71 E-value=3.8e+02 Score=21.04 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCC
Q 026011 122 LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG 201 (245)
Q Consensus 122 ~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~ 201 (245)
........|++++ ++|+.++..+-. +...+..+. .+++...+++.. +|
T Consensus 16 i~~~~~~al~~l~----~~g~~~~i~TGR--------~~~~~~~~~-~~~~~~~~~I~~---nG---------------- 63 (254)
T PF08282_consen 16 ISPETIEALKELQ----EKGIKLVIATGR--------SYSSIKRLL-KELGIDDYFICS---NG---------------- 63 (254)
T ss_dssp SCHHHHHHHHHHH----HTTCEEEEECSS--------THHHHHHHH-HHTTHCSEEEEG---GG----------------
T ss_pred eCHHHHHHHHhhc----ccceEEEEEccC--------ccccccccc-ccccchhhhccc---cc----------------
Confidence 4455556665544 467887777643 677888887 676665344310 11
Q ss_pred CCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011 202 FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243 (245)
Q Consensus 202 ~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll 243 (245)
.++.+.+|++++... .+.+.+.+.++.+.
T Consensus 64 -----------a~i~~~~~~~l~~~~--i~~~~~~~i~~~~~ 92 (254)
T PF08282_consen 64 -----------ALIDDPKGKILYEKP--IDSDDVKKILKYLK 92 (254)
T ss_dssp -----------TEEEETTTEEEEEES--B-HHHHHHHHHHHH
T ss_pred -----------ceeeecccccchhhh--eeccchhheeehhh
Confidence 123678888876553 35655655555443
No 347
>PRK09267 flavodoxin FldA; Validated
Probab=22.56 E-value=2.4e+02 Score=21.45 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=7.7
Q ss_pred ChHHHHHHHHHHh
Q 026011 231 SPFQIEKDIQKLV 243 (245)
Q Consensus 231 ~~~~l~~~l~~ll 243 (245)
+.+.+.++++.+.
T Consensus 152 td~~i~~w~~~i~ 164 (169)
T PRK09267 152 TDERIEAWVKQIK 164 (169)
T ss_pred hHHHHHHHHHHHH
Confidence 3456666666654
No 348
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=22.39 E-value=85 Score=21.19 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=12.0
Q ss_pred eEEEECCCCcEEEecCCC
Q 026011 212 EKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 212 ~~~liD~~G~i~~~~~g~ 229 (245)
.+.|.|++|+.++++...
T Consensus 27 D~~v~d~~g~~vwrwS~~ 44 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSDG 44 (82)
T ss_dssp EEEEE-TT--EEEETTTT
T ss_pred EEEEECCCCCEEEEecCC
Confidence 467889999999999744
No 349
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=22.21 E-value=2.7e+02 Score=25.53 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=34.7
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (245)
-|||.+|.. .+.-|.......--.++.++| ++.|+.++++++ ..+++...+ ++--..||+
T Consensus 179 igKPFvill-Ns~~P~s~et~~L~~eL~ekY---~vpVlpvnc~~l------~~~DI~~Il-~~vLyEFPV 238 (492)
T PF09547_consen 179 IGKPFVILL-NSTKPYSEETQELAEELEEKY---DVPVLPVNCEQL------REEDITRIL-EEVLYEFPV 238 (492)
T ss_pred hCCCEEEEE-eCCCCCCHHHHHHHHHHHHHh---CCcEEEeehHHc------CHHHHHHHH-HHHHhcCCc
Confidence 478765544 333444443333333444454 489999999864 677777776 454445554
No 350
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=22.20 E-value=4.9e+02 Score=23.51 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCC-----CCCCChHHHHHHHHHhcCCCcceeec
Q 026011 141 GFEILAFPCNQFGG-----QEPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 141 g~~vv~Vs~D~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
|++++.++.+..+. +.+...+++.+.+ .+.+.++-+..|
T Consensus 197 g~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v-~~~~adlGia~D 240 (448)
T PRK14316 197 GADVTVIGTSPDGLNINDGVGSTHPEALQELV-VEKGADLGLAFD 240 (448)
T ss_pred CCeEEEEccCCCCCCCCCCCCCCCHHHHHHHH-hhcCCCEEEEEc
Confidence 56777776542211 1123456666666 555555555543
No 351
>PRK05370 argininosuccinate synthase; Validated
Probab=21.94 E-value=1.9e+02 Score=26.36 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=34.8
Q ss_pred ecCCC-CCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011 102 PLSKF-KGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (245)
Q Consensus 102 ~l~~~-~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
.|+++ +|+.|+|.|-+ -....|.. -|+ ++|++|+++..| .+.+..++-+.+++-+ .+.|..
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~---wL~-------e~~~eVia~~aD-vGQ~~~ed~~~i~~kA-~~~GA~ 66 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALL---WMR-------QKGAVPYAYTAN-LGQPDEDDYDAIPRRA-MEYGAE 66 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHH---HHH-------hcCCeEEEEEEE-CCCCCccchHHHHHHH-HHhCCC
Confidence 35676 88877787764 34334442 222 226889999988 2222123445666665 555653
No 352
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.93 E-value=3.9e+02 Score=20.79 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=56.0
Q ss_pred ccCeEEEcCCCCeeecCCCCC-CEEEEEEecCCCC-------CChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011 88 LYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCG-------LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (245)
Q Consensus 88 ~pdf~l~~~~G~~v~l~~~~g-k~vll~F~~t~C~-------~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~ 159 (245)
.|..++++...-++...+++| |.|+++ -+.|- .-..+++.+++++..|.++++-++.=|.. ..+-|.
T Consensus 22 ~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG---~~~~D~ 96 (190)
T KOG2961|consen 22 LPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAG---LTEYDH 96 (190)
T ss_pred ccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcC---ccccCC
Confidence 455555555555556666555 444443 34443 44678899999999999887777665542 223333
Q ss_pred hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhh
Q 026011 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQF 194 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~ 194 (245)
.....+..+++.+ .|++.-......-..+.+.+
T Consensus 97 d~s~Ak~le~k~g--IpVlRHs~kKP~ct~E~~~y 129 (190)
T KOG2961|consen 97 DDSKAKALEAKIG--IPVLRHSVKKPACTAEEVEY 129 (190)
T ss_pred chHHHHHHHHhhC--CceEeecccCCCccHHHHHH
Confidence 4444444435544 56664333333334555554
No 353
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=21.88 E-value=2.7e+02 Score=23.53 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=20.5
Q ss_pred CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (245)
Q Consensus 107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~ 149 (245)
.|+.||+.|=+-.--.=- ..+..+.+.+.-+|++|+++..
T Consensus 71 ~~~~vvivfEGrDAAGKg---G~Ikri~~~lNPR~~rvval~a 110 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKG---GAIKRITEALNPRGARVVALPA 110 (270)
T ss_pred cCCeEEEEEecccccCCC---chhHHHhhhcCCceeEEeecCC
Confidence 456666666522111100 1234445566667788888743
No 354
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.73 E-value=3.8e+02 Score=23.31 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=18.9
Q ss_pred CcEEEEEecCCCCC-----CCC---CChHHHHHHHHHhcCCCcceeec
Q 026011 141 GFEILAFPCNQFGG-----QEP---GSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 141 g~~vv~Vs~D~~~~-----~~~---~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
|++++.++.+..+. +++ ...+.+.+.+ +..+..+-+..|
T Consensus 136 g~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v-~~~~adlG~a~D 182 (355)
T cd03084 136 GAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVV-KAEKADFGVAFD 182 (355)
T ss_pred CCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHH-HhcCCCEEEEEc
Confidence 57787777642221 111 2334455555 445555555533
No 355
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=21.56 E-value=50 Score=18.14 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.0
Q ss_pred EEEcCCCCeeecCC
Q 026011 92 TVKDIDGKDVPLSK 105 (245)
Q Consensus 92 ~l~~~~G~~v~l~~ 105 (245)
++.|.+|+++.|.+
T Consensus 14 ~l~Dv~G~~Inl~~ 27 (32)
T PF10813_consen 14 PLKDVKGNPINLYK 27 (32)
T ss_pred cccccCCCEEechh
Confidence 46778888887743
No 356
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=21.53 E-value=4.7e+02 Score=23.59 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=20.5
Q ss_pred CCcEEEEEecCCCCC-----CCCCChHHHHHHHHHhcCCCcceeec
Q 026011 140 QGFEILAFPCNQFGG-----QEPGSNPEIKEFACTRFKAEFPIFDK 180 (245)
Q Consensus 140 ~g~~vv~Vs~D~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~d 180 (245)
.|++++.++.+..+. +.+...+++.+.+ .+.+..+-+..|
T Consensus 196 lG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~D 240 (440)
T PRK14323 196 AGADVFALFNTPDGRNINRGCGSTHPEALQRFV-VEGGLDLGVAFD 240 (440)
T ss_pred cCCcEEEEeccCCCCcCCCCCCCCCHHHHHHHH-hccCCCEEEEeC
Confidence 356777776552211 1123555666666 555555555533
No 357
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=21.44 E-value=2.2e+02 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHhcCC
Q 026011 158 GSNPEIKEFACTRFKA 173 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~ 173 (245)
.+++++.+|..++||-
T Consensus 74 ~sd~eI~~~~v~RYG~ 89 (126)
T PRK10144 74 KSEVEIIGWMTERYGD 89 (126)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 4889999999888884
No 358
>PRK10200 putative racemase; Provisional
Probab=21.39 E-value=2e+02 Score=23.55 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026011 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (245)
Q Consensus 125 ~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 179 (245)
.-.+.|.+..+.+.+.|+++|.|.++ +.....+.+++.+ +.|++.
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCN--------Tah~~~~~l~~~~--~iPii~ 103 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTN--------TMHKVADAIESRC--SLPFLH 103 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCc--------hHHHHHHHHHHhC--CCCEee
Confidence 35678888888888889999999998 5555555554444 456653
No 359
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=21.29 E-value=3.7e+02 Score=21.92 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=19.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (245)
Q Consensus 119 ~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~ 167 (245)
.||.|+. .|..++.+ +.-+.|-.|.+. ..++..++..
T Consensus 20 dcpf~qr---~~m~L~~k--~~~f~vttVd~~-------~kp~~f~~~s 56 (221)
T KOG1422|consen 20 DCPFCQR---LFMTLELK--GVPFKVTTVDLS-------RKPEWFLDIS 56 (221)
T ss_pred CChhHHH---HHHHHHHc--CCCceEEEeecC-------CCcHHHHhhC
Confidence 3555554 44555533 334677777664 3555555554
No 360
>PF14903 WG_beta_rep: WG containing repeat
Probab=21.16 E-value=64 Score=17.13 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.3
Q ss_pred EECCCCcEEE
Q 026011 215 LVDKNGKVIE 224 (245)
Q Consensus 215 liD~~G~i~~ 224 (245)
+||.+|+++.
T Consensus 3 ~id~~G~~vi 12 (35)
T PF14903_consen 3 YIDKNGKIVI 12 (35)
T ss_pred EEeCCCCEEE
Confidence 6899999874
No 361
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.15 E-value=6.1e+02 Score=22.87 Aligned_cols=11 Identities=45% Similarity=0.685 Sum_probs=6.5
Q ss_pred EEEECCCCcEE
Q 026011 213 KFLVDKNGKVI 223 (245)
Q Consensus 213 ~~liD~~G~i~ 223 (245)
..++|++|+++
T Consensus 247 ~~ivd~~G~~i 257 (445)
T cd05803 247 LALVDEDGRPI 257 (445)
T ss_pred EEEECCCCCCc
Confidence 45567766653
No 362
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=21.13 E-value=76 Score=27.06 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=14.0
Q ss_pred cCCCCCChHHHHHHHHHHHHhh
Q 026011 117 ASRCGLTPSNYSELSHLYEKYK 138 (245)
Q Consensus 117 ~t~C~~C~~~~~~l~~l~~~~~ 138 (245)
-+|||.|-... .++.+.+.+.
T Consensus 17 ~~~CpGCg~~~-il~~l~~al~ 37 (286)
T PRK11867 17 PRWCPGCGDGS-ILAALQRALA 37 (286)
T ss_pred CCcCCCCCCHH-HHHHHHHHHH
Confidence 45999998544 6666666553
No 363
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=21.12 E-value=3.1e+02 Score=19.58 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC--hHHHHHHHHHhcCCCc
Q 026011 127 YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS--NPEIKEFACTRFKAEF 175 (245)
Q Consensus 127 ~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~--~~~~~~~~~~~~~~~~ 175 (245)
.+...++.+.++++|+.++.+|-..-. .... .+.+.+.+ +.+++.+
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~--~~~~~~~~~~~~~l-~~~~l~~ 74 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQSGI--GRGKFSSGRVARRL-EELGVPI 74 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCccc--cccHHHHHHHHHHH-HHCCCCE
Confidence 355666667777788998888754000 0000 44566666 6667653
No 364
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=21.06 E-value=2.9e+02 Score=19.02 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=30.9
Q ss_pred EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011 110 VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (245)
Q Consensus 110 ~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D 150 (245)
.|.|.|. +.-|+.-..-...|+-++..+.+.|.+|+-.-++
T Consensus 6 ~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~ 47 (88)
T PF15092_consen 6 YVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIE 47 (88)
T ss_pred EEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEec
Confidence 3444443 6778875666788999999999999998888654
No 365
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=21.05 E-value=1.9e+02 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026011 126 NYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (245)
Q Consensus 126 ~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (245)
.+..|.++.+++.+.|..++.+.-+ ..+.+.+++ +++++.--+
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~-~~~~~~~V~ 93 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGD--------PEEVLPELA-KEYGATAVY 93 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESS--------HHHHHHHHH-HHHTESEEE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecc--------hHHHHHHHH-HhcCcCeeE
Confidence 4577888999999999999988755 567777777 777765433
No 366
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.93 E-value=2.8e+02 Score=19.86 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.2
Q ss_pred eeEEEECCCCcEEEecCCC
Q 026011 211 FEKFLVDKNGKVIERYPPT 229 (245)
Q Consensus 211 P~~~liD~~G~i~~~~~g~ 229 (245)
-..|+.|++|..+..+.|.
T Consensus 105 ~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 105 RSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred eEEEEECCCCCEEEEecCC
Confidence 4689999999999888764
No 367
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.32 E-value=2.3e+02 Score=20.97 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHhcCC
Q 026011 158 GSNPEIKEFACTRFKA 173 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~ 173 (245)
.+++++.+|..++||-
T Consensus 74 ~Sd~eI~~~~v~RYG~ 89 (126)
T TIGR03147 74 KSNQQIIDFMTARFGD 89 (126)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 4889999999888884
No 368
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=20.08 E-value=5.8e+02 Score=23.03 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=18.3
Q ss_pred CcEEEEEecCCCCCC-----CCCChHHHHHHHHHhcCCCcceee
Q 026011 141 GFEILAFPCNQFGGQ-----EPGSNPEIKEFACTRFKAEFPIFD 179 (245)
Q Consensus 141 g~~vv~Vs~D~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~ 179 (245)
|++++.++.+..+.. .+...+.+.+.+ .+.+.++-+..
T Consensus 196 g~~v~~in~~~d~~~~~~~~~~~~l~~l~~~v-~~~~adlGia~ 238 (443)
T TIGR01455 196 GAEVIAIGVEPDGLNINDGCGSTHLDALQKAV-REHGADLGIAF 238 (443)
T ss_pred CCEEEEEccCCCCCCCCCCCCCCCHHHHHHHH-hhcCCCEEEEE
Confidence 566666665422111 013445555555 45555555553
No 369
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=20.08 E-value=1.2e+02 Score=26.82 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=24.8
Q ss_pred EEEECCCCcEEEecCCCC-----ChHHHHHHHHHHhh
Q 026011 213 KFLVDKNGKVIERYPPTT-----SPFQIEKDIQKLVV 244 (245)
Q Consensus 213 ~~liD~~G~i~~~~~g~~-----~~~~l~~~l~~ll~ 244 (245)
-+.||+||.|-.-+.|.. +++++++.|++.|+
T Consensus 104 ~~~V~~dG~I~~P~vG~V~vaG~T~~q~~~~I~~~L~ 140 (355)
T PRK15175 104 NILVTDSNTVQVPYAGTIPVSGLDVTQLADEIKKRLS 140 (355)
T ss_pred CeEECCCCeEEecccceEEECCCCHHHHHHHHHHHHH
Confidence 478999999987666653 78888888887664
Done!