BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026012
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 17/228 (7%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFS-------MPEPWTGSIWARTKCSNN 78
+ N C TVW +GD + + E+ S P PW+G W RT+CS +
Sbjct: 3 ITFTNNCPNTVWPGTL--TGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 79 ESFYFSCETGDCGTGQVDCQGPMPRYPVTLLNLSI-NNKSEVSYEVSLNHGFNVPIRIRP 137
+ F+CET DCG+GQV C G P TL+ ++I N + Y+VSL GFN+P+ + P
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 138 DGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCT-EN 196
GGT C C A+++ VC L +GS ++C S C A D+++CCT N
Sbjct: 121 QGGT------GECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPN 174
Query: 197 FSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
+ + C P +YS+ F++ C A++Y D+ T++C G Y +TFCP
Sbjct: 175 NTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 105/228 (46%), Gaps = 13/228 (5%)
Query: 24 VILNIENQCSYTVWLAA-----SPSSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNN 78
++ +N C Y VW P E A P PW G WART CS +
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 79 ESFYFSCETGDCGTGQVDCQGPMPRYPVTLLNLSI-NNKSEVSYEVSLNHGFNVPIRIRP 137
S F C T DC +GQV C G P TL +I + Y+VSL GFN+P+ + P
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 138 DGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCT-EN 196
GGT C C A+++ VC EL +GS VAC S C ++CCT
Sbjct: 121 QGGT------GDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQ 174
Query: 197 FSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
+ + C P YS+ F C A++Y D+ T++C G Y +TFCP
Sbjct: 175 NTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 106/222 (47%), Gaps = 23/222 (10%)
Query: 24 VILNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYF 83
I N+CSYTVW AA P G ++ T+ + + G IW RT CS + S
Sbjct: 1 ATFEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTT--GGRIWGRTGCSFDGSGRG 58
Query: 84 SCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSY-EVSLNHGFNVPIRIRPDGGTL 142
C+TGDCG G + C P TL ++N + + + ++SL GFNVP+ P G
Sbjct: 59 RCQTGDCG-GVLSCTA-YGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSG-- 114
Query: 143 VDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQAC 202
C + C AD++ C L A CN+PC + ++CC AC
Sbjct: 115 ------GCRGIRCAADINGQCPGALKAPG------GCNNPCTVFKTDQYCCNSG----AC 158
Query: 203 QPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
P YS+ FK+ C A++YP D+ T++C G Y V FCP
Sbjct: 159 SPTDYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 105/222 (47%), Gaps = 25/222 (11%)
Query: 24 VILNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYF 83
+I N+C+YTVW AASP G T+ + P IW RT C+ + +
Sbjct: 1 ATFDILNKCTYTVWAAASPGGGRRLDSGQSWTITV--NPGTTNARIWGRTSCTFDANGRG 58
Query: 84 SCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSY-EVSLNHGFNVPIRIRPDGGTL 142
CETGDC G ++CQG P TL ++N + + Y ++SL GFN+P+
Sbjct: 59 KCETGDC-NGLLECQG-YGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDF------- 109
Query: 143 VDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQAC 202
S C + C D++ C EL A CN+PC + +CCT+ +C
Sbjct: 110 -----SGCRGIQCSVDINGQCPSELKAPG------GCNNPCTVFKTNEYCCTDGPG--SC 156
Query: 203 QPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
P YSK FK C A++YP D+ ++C Y VTFCP
Sbjct: 157 GPTTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 22/224 (9%)
Query: 24 VILNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPE-PWTGSIWARTKCSNNESFY 82
+ + N C YTVW A++P G + G + + P +W RT C+ N +
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDR--GQTWVINAPRGTKMARVWGRTNCNFNAAGR 58
Query: 83 FSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSY-EVSLNHGFNVPIRIRPDGGT 141
+C+TGDCG G + C G + P TL +++ S + + ++SL GFN+P+ P
Sbjct: 59 GTCQTGDCG-GVLQCTG-WGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAP---- 112
Query: 142 LVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQA 201
+ SG C + C A+++ C EL CN+PC ++CCT+
Sbjct: 113 -TNPSGGKCHAIHCTANINGECPRELRVPG------GCNNPCTTFGGQQYCCTQG----P 161
Query: 202 CQPNQYSKKFKQLCGLAHTYPADNNPPTYSC-GGANRYNVTFCP 244
C P +SK FKQ C A++YP D+ T++C GG+ Y V FCP
Sbjct: 162 CGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSE----HAPGTLEIFSMPEPWTGSIWARTKCSNNESF 81
I N+CSYTVW AAS ++ ++ + I P G IWART C ++S
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
Query: 82 YFSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIRPDGGT 141
C TGDCG G + C+ R P TL S+N + ++S GFNVP+ P
Sbjct: 63 RGICRTGDCG-GLLQCK-RFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSP---- 116
Query: 142 LVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQA 201
+ C V C AD+ C +L A CN C + + +CCT
Sbjct: 117 ----TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----K 163
Query: 202 CQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
C P +YS+ FK+LC A +Y D P T +C G++ Y VTFCP
Sbjct: 164 CGPTEYSRFFKRLCPDAFSYVLD-KPTTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSE----HAPGTLEIFSMPEPWTGSIWARTKCSNNESF 81
I N+CSYTVW AAS ++ ++ + I P G IWART C ++S
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
Query: 82 YFSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIRPDGGT 141
C+TGDCG G + C+ R P TL S+N + ++S GFNVP+ P
Sbjct: 63 SGICKTGDCG-GLLRCK-RFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSP---- 116
Query: 142 LVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQA 201
+ C V C AD+ C +L A CN C + + +CCT
Sbjct: 117 ----TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----K 163
Query: 202 CQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
C P +YS+ FK+LC A +Y D P T +C G++ Y VTFCP
Sbjct: 164 CGPTEYSRFFKRLCPDAFSYVLD-KPTTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 108/228 (47%), Gaps = 34/228 (14%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWT---------GSIWARTKCS 76
I N+CSYTVW AAS ++ G ++ S E WT G IWART C
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDA----GGRQLNSG-ESWTINVEPGTNGGKIWARTDCY 57
Query: 77 NNESFYFSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIR 136
++S C+TGDCG G + C+ R P TL S+N + ++S GFNVP+
Sbjct: 58 FDDSGSGICKTGDCG-GLLRCK-RFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFS 115
Query: 137 PDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTEN 196
P + C V C AD+ C +L A CN C + + +CCT
Sbjct: 116 P--------TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG 162
Query: 197 FSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
C P +YS+ FK+LC A +Y D P T +C G++ Y VTFCP
Sbjct: 163 ----KCGPTEYSRFFKRLCPDAFSYVLD-KPTTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 108/228 (47%), Gaps = 34/228 (14%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWT---------GSIWARTKCS 76
I N+CSYTVW AAS ++ G ++ S E WT G IWART C
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDA----GGRQLNSG-ESWTINVEPGTNGGKIWARTDCY 57
Query: 77 NNESFYFSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIR 136
++S C+TGDCG G + C+ R P TL S+N + ++S GFNVP+
Sbjct: 58 FDDSGSGICKTGDCG-GLLRCK-RFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFS 115
Query: 137 PDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTEN 196
P + C V C AD+ C +L A CN C + + +CCT
Sbjct: 116 P--------TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG 162
Query: 197 FSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
C P +YS+ FK+LC A +Y D P T +C G++ Y VTFCP
Sbjct: 163 ----KCGPTEYSRFFKRLCPDAFSYVLD-KPTTVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 108/228 (47%), Gaps = 34/228 (14%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWT---------GSIWARTKCS 76
I N+CSYTVW AAS ++ G ++ S E WT G IWART C
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDA----GGRQLNSG-ESWTINVEPGTNGGKIWARTDCY 57
Query: 77 NNESFYFSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIR 136
++S C+TGDCG G + C+ R P TL S+N + ++S GFNVP+
Sbjct: 58 FDDSGSGICKTGDCG-GLLRCK-RFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFS 115
Query: 137 PDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTEN 196
P + C V C AD+ C +L A CN C + + +CCT
Sbjct: 116 P--------TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG 162
Query: 197 FSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
C P +YS+ FK+LC A +Y D P T +C G++ Y VTFCP
Sbjct: 163 ----KCGPTEYSRFFKRLCPDAFSYVLD-KPTTVTCPGSSNYRVTFCP 205
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Query: 24 VILNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYF 83
+ + NQC +TVW A+ P G + I + IWART C + S
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGE-SWRITAPAGTTAARIWARTGCKFDASGRG 59
Query: 84 SCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSY-EVSLNHGFNVPIRIRPDGGTL 142
SC TGDCG G + C G R P TL ++ + + + ++SL GFNVP+ PDGG+
Sbjct: 60 SCRTGDCG-GVLQCTG-YGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSG 117
Query: 143 VDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQAC 202
R G C V D++ C EL ++G CN+ C + +CC + + C
Sbjct: 118 CSR-GPRCAV-----DVNARCPAEL---RQDG---VCNNACPVFKKDEYCCVGS-AANDC 164
Query: 203 QPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
P YS+ FK C A++YP D+ T++C Y V FCP
Sbjct: 165 HPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 24 VILNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPE-PWTGSIWARTKCSNNESFY 82
+ + N C YTVW A++P G G + + P IW RT C+ N +
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNR--GQTWVINAPRGTKMARIWGRTGCNFNAAGR 58
Query: 83 FSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSY-EVSLNHGFNVPIRIRPDGGT 141
+C+TGDCG G + C G + P TL +++ S + + ++SL GFN+P+ P
Sbjct: 59 GTCQTGDCG-GVLQCTG-WGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAP---- 112
Query: 142 LVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQA 201
SG C + C A+++ C L CN+PC ++CCT+
Sbjct: 113 -TKPSGGKCHAIHCTANINGECPRALKVPG------GCNNPCTTFGGQQYCCTQG----P 161
Query: 202 CQPNQYSKKFKQLCGLAHTYPADNNPPTYSC-GGANRYNVTFCP 244
C P + SK FK+ C A++YP D+ T++C GG+ Y V FCP
Sbjct: 162 CGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWT---------GSIWARTKCS 76
I N+CSYTVW AAS ++ G ++ S E WT G IWART C
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDA----GGRQLNSG-ESWTINVEPGTNGGKIWARTDCX 57
Query: 77 NNESFYFSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIR 136
++S C+TGDCG G + C+ R P TL S+N + ++S GFNVP+
Sbjct: 58 FDDSGSGICKTGDCG-GLLRCK-RFGRPPTTLAEFSLNQXGKDYIDISNIKGFNVPMNFS 115
Query: 137 PDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTEN 196
P + C V C AD+ C +L A CN C + + +CCT
Sbjct: 116 P--------TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG 162
Query: 197 FSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
C P + S+ FK+LC A +Y D P T +C G++ Y VTFCP
Sbjct: 163 ----KCGPTEXSRFFKRLCPDAFSYVLD-KPTTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 26 LNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWT---------GSIWARTKCS 76
I N+CS TVW AAS ++ G ++ S E WT G IWART C
Sbjct: 3 FEIVNRCSXTVWAAASKGDAALDA----GGRQLNSG-ESWTINVEPGTNGGKIWARTDCX 57
Query: 77 NNESFYFSCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIR 136
++S C+TGDCG G + C+ R P TL S+N + ++S GFNVP+
Sbjct: 58 FDDSGSGICKTGDCG-GLLRCK-RFGRPPTTLAEFSLNQXGKDXIDISNIKGFNVPMNFS 115
Query: 137 PDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTEN 196
P + C V C AD+ C +L A CN C + + +CCT
Sbjct: 116 P--------TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG 162
Query: 197 FSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244
C P + S+ FK+LC A +Y D P T +C G++ Y VTFCP
Sbjct: 163 ----KCGPTEXSRFFKRLCPDAFSYVLD-KPTTVTCPGSSNYRVTFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 25 ILNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYFS 84
+ + N C YTVW AA+P G E + ++ P IW RT C+ + +
Sbjct: 3 VFEVHNNCPYTVWAAATPVGGGRRLERGQ-SWWFWAPPGTKMARIWGRTNCNFDGAGRGW 61
Query: 85 CETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVS-YEVSLNHGFNVPIRIRPDGGTLV 143
C+TGDCG G ++C+G + P TL ++N S + +++S+ GFN+P+ P
Sbjct: 62 CQTGDCG-GVLECKG-WGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGP-----T 114
Query: 144 DRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQACQ 203
C + C A+++ C L CN+PC ++CCT+ C
Sbjct: 115 KPGPGKCHGIQCTANINGECPGSLRVPG------GCNNPCTTFGGQQYCCTQG----PCG 164
Query: 204 PNQYSKKFKQLCGLAHTYPADNNPPTYSC-GGANRYNVTFCP 244
P + S+ FKQ C A++YP D+ T++C Y V FCP
Sbjct: 165 PTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 26 LNIENQCSYTVW--LAASPSSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYF 83
L I N+C +TVW +A + G +E PG P + IW RT CS + +
Sbjct: 3 LTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRAGKG 62
Query: 84 SCETGDCGTGQVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIRPDGGTLV 143
C+TGDCG + C G P P T+ +S+ + S GFNVP+ ++ G +
Sbjct: 63 RCQTGDCGGSSLTCGG-NPAVPTTMAEVSVLQGNYTYGVTSTLKGFNVPMNLKCSSGDAL 121
Query: 144 DRSGSSCPVVD 154
+ C VV
Sbjct: 122 PCRKAGCDVVQ 132
>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|C Chain C, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|E Chain E, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|G Chain G, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|I Chain I, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|K Chain K, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|M Chain M, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|O Chain O, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 421
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 108 LLNLS-INNKSEVSYEVSLNHGFNVPIRIRP----DGGTLVDRSGSSCPVVDCI 156
+L L+ + +K V V FNVP+R+R D GTL+ S PV + +
Sbjct: 201 MLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDPGTLIAGSMEDIPVEEAV 254
>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|E Chain E, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|G Chain G, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|I Chain I, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|K Chain K, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|M Chain M, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|O Chain O, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 421
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 108 LLNLS-INNKSEVSYEVSLNHGFNVPIRIRP----DGGTLVDRSGSSCPVVDCI 156
+L L+ + +K V V FNVP+R+R D GTL+ S PV + +
Sbjct: 201 MLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDPGTLIAGSMEDIPVEEAV 254
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 19 GGQSEVILNIENQ-----CSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWTGSIWART 73
GG+S ++ + + CS ++ G FN ++ +I SM P +I A
Sbjct: 47 GGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAE 106
Query: 74 KCSNNESFYFSCETGDCGTGQVDCQGPMPRYPV--TLLNLSINNKSEVS 120
+ ++ E TG G +P V T LN ++VS
Sbjct: 107 LAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVS 155
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 19 GGQSEVILNIENQ-----CSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEPWTGSIWART 73
GG+S ++ + + CS ++ G FN ++ +I SM P +I A
Sbjct: 53 GGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAE 112
Query: 74 KCSNNESFYFSCETGDCGTGQVDCQGPMPRYPV--TLLNLSINNKSEVS 120
+ ++ E TG G +P V T LN ++VS
Sbjct: 113 LAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVS 161
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 162 VCAPELVATNKNGSYVACNSPCDALRDARFCCTENFSGQACQPNQYSKKFKQLCGLAHTY 221
V P +++ N +G V + P D CC E+ + P+ + FKQ LAHTY
Sbjct: 206 VSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLT-----PD--DRVFKQ---LAHTY 255
Query: 222 PADNNP 227
+DN+P
Sbjct: 256 -SDNHP 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,923,039
Number of Sequences: 62578
Number of extensions: 329399
Number of successful extensions: 623
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 21
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)