Query 026012
Match_columns 245
No_of_seqs 137 out of 676
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:40:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1.7E-82 3.7E-87 557.2 18.3 209 25-243 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 3.4E-80 7.5E-85 542.6 17.7 208 26-244 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 7.9E-79 1.7E-83 535.9 17.1 205 26-244 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 2.3E-76 5E-81 517.7 10.8 203 30-244 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 6.7E-58 1.5E-62 383.7 14.6 149 26-243 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 8.8E-53 1.9E-57 351.1 14.8 150 26-244 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 1.3E-49 2.9E-54 332.5 14.1 145 26-242 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.0 0.00011 2.4E-09 61.9 12.6 26 104-129 72-98 (155)
9 cd09216 GH64-LPHase-like glyco 95.9 0.053 1.1E-06 51.5 9.3 79 51-139 59-143 (353)
10 cd09220 GH64-GluB-like glycosi 95.5 0.11 2.4E-06 49.5 9.8 82 52-140 61-147 (369)
11 PF07172 GRP: Glycine rich pro 73.8 1.6 3.4E-05 34.0 1.0 26 1-26 1-28 (95)
12 cd09214 GH64-like glycosyl hyd 72.7 2.8 6.1E-05 39.4 2.5 33 107-140 124-156 (319)
13 cd09214 GH64-like glycosyl hyd 67.2 5.6 0.00012 37.4 3.3 22 205-226 276-299 (319)
14 TIGR00192 urease_beta urease, 66.5 16 0.00035 28.9 5.2 48 22-71 20-92 (101)
15 cd00407 Urease_beta Urease bet 65.7 17 0.00036 28.8 5.1 48 22-71 20-92 (101)
16 PRK13203 ureB urease subunit b 62.9 14 0.00031 29.2 4.3 48 22-71 20-92 (102)
17 PRK13202 ureB urease subunit b 61.5 22 0.00048 28.2 5.2 47 23-71 22-93 (104)
18 cd09220 GH64-GluB-like glycosi 56.0 13 0.00028 35.8 3.5 23 204-226 320-344 (369)
19 PRK13201 ureB urease subunit b 53.4 34 0.00073 28.4 5.1 49 22-72 20-93 (136)
20 cd09216 GH64-LPHase-like glyco 52.3 15 0.00032 35.2 3.3 22 205-226 310-333 (353)
21 PF00699 Urease_beta: Urease b 52.2 25 0.00054 27.8 4.0 48 22-71 19-91 (100)
22 PRK13204 ureB urease subunit b 51.9 35 0.00075 29.0 5.1 49 22-72 43-116 (159)
23 PRK13198 ureB urease subunit b 47.8 44 0.00095 28.4 5.1 48 22-71 48-120 (158)
24 PRK13205 ureB urease subunit b 45.3 36 0.00079 28.9 4.2 39 22-62 20-82 (162)
25 PRK13192 bifunctional urease s 44.1 49 0.0011 29.4 5.0 48 22-71 129-201 (208)
26 PRK13986 urease subunit alpha; 42.9 52 0.0011 29.5 5.0 49 22-72 125-198 (225)
27 PF13978 DUF4223: Protein of u 35.4 37 0.0008 23.8 2.3 36 1-37 1-36 (56)
28 PHA03094 dUTPase; Provisional 32.3 45 0.00098 27.5 2.9 28 47-76 36-69 (144)
29 PF05991 NYN_YacP: YacP-like N 25.9 22 0.00048 29.9 -0.1 10 125-134 2-11 (166)
30 COG0832 UreB Urea amidohydrola 24.6 1.8E+02 0.0039 23.1 4.8 50 22-73 20-94 (106)
31 PF06282 DUF1036: Protein of u 23.6 1.7E+02 0.0037 23.2 4.7 35 23-59 3-44 (115)
32 cd05468 pVHL von Hippel-Landau 23.0 1.9E+02 0.004 23.8 4.9 44 23-71 8-55 (141)
33 PF10633 NPCBM_assoc: NPCBM-as 22.9 1.5E+02 0.0033 21.2 3.9 16 22-37 7-22 (78)
34 PF11142 DUF2917: Protein of u 22.8 92 0.002 22.1 2.7 22 47-70 2-28 (63)
35 PF03621 MbtH: MbtH-like prote 20.1 69 0.0015 22.4 1.5 26 24-49 12-38 (54)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1.7e-82 Score=557.20 Aligned_cols=209 Identities=38% Similarity=0.832 Sum_probs=198.3
Q ss_pred EEEEEeCCCCceeceeec-------CCCCeeccCCCCceEEEEcCCCCceeEeeeeccCCCCCCccccccCccCCCcccc
Q 026012 25 ILNIENQCSYTVWLAASP-------SSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYFSCETGDCGTGQVDC 97 (245)
Q Consensus 25 t~tv~N~C~~tVwp~~~p-------~~~g~~L~~~~G~s~~~~vp~~WsGriwaRtgCs~~~~g~~~C~TGdCg~g~~~C 97 (245)
+|||+|+|+||||||+++ ..+||+| ++|++++|+||.+|+|||||||+|++|+.|++.|+||||+ |.|+|
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L--~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCg-g~l~C 77 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFEL--APGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCG-GGLEC 77 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEc--CCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCC-Ceeec
Confidence 599999999999999964 3589999 9999999999999999999999999999999999999999 99999
Q ss_pred CCCCCCCCceEEEEEec-CCCCceeeeeccCccCCCceeecCCCCcCCCCCCCCCcccccccccccCCcccccccCCCce
Q 026012 98 QGPMPRYPVTLLNLSIN-NKSEVSYEVSLNHGFNVPIRIRPDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSY 176 (245)
Q Consensus 98 ~g~~~~~paTlaEftl~-~~~~d~YDVSlVdGfNlP~~i~p~~~~~~~~~~~~C~~~~C~~dl~~~CP~~l~~~~~~g~~ 176 (245)
++.+++||+|||||||+ .+++|||||||||||||||+|+|+++. +.|+.++|.+|||..||.|||+++.+|++
T Consensus 78 ~g~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~------~~C~~~~C~~din~~CP~~L~v~~~~g~v 151 (219)
T cd09218 78 NGAGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGS------GGCRTAGCVADLNAVCPAELQVKNSGGRV 151 (219)
T ss_pred CCCCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCC------CCCCCCcccCcccccCCHHHeeccCCCcE
Confidence 98888999999999998 668899999999999999999998653 37999999999999999999999888999
Q ss_pred eeecCCccccCCCCcccCC--CCCCCCCCCchhHHHHHhhccccccCCCCCCCCceeeCCCCceEEEec
Q 026012 177 VACNSPCDALRDARFCCTE--NFSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFC 243 (245)
Q Consensus 177 v~C~SaC~~~~~~~yCC~g--~~~~~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~~~~y~VtFC 243 (245)
|||||||.+|++|||||+| ++| ++|+|+.||++||++||+||+|||||++|+|+|+++++|+||||
T Consensus 152 v~C~SaC~~f~~~~~CC~g~~~~p-~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 152 VACKSACLAFNTDEYCCRGAYGTP-ETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred eeecCHHHhhCCccceecCCCCCC-CcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999999999999 677 89999999999999999999999999999999998899999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=3.4e-80 Score=542.55 Aligned_cols=208 Identities=41% Similarity=0.804 Sum_probs=195.9
Q ss_pred EEEEeCCCCceeceeec------CCCCeeccCCCCceEEEEcCCCCc-eeEeeeeccCCCCCCccccccCccCCCccccC
Q 026012 26 LNIENQCSYTVWLAASP------SSGDFNSEHAPGTLEIFSMPEPWT-GSIWARTKCSNNESFYFSCETGDCGTGQVDCQ 98 (245)
Q Consensus 26 ~tv~N~C~~tVwp~~~p------~~~g~~L~~~~G~s~~~~vp~~Ws-GriwaRtgCs~~~~g~~~C~TGdCg~g~~~C~ 98 (245)
|||+|+|+||||||+++ ..+||+| ++|++++|++|++|+ |||||||+|++|+.|++.|+||||+ |.|+|+
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L--~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCg-G~l~C~ 77 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFEL--NSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCG-GVLQCN 77 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEec--CCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCC-CeeecC
Confidence 79999999999999965 3689999 999999999999995 9999999999999999999999999 999999
Q ss_pred CCCCCCCceEEEEEec-CCCCceeeeeccCccCCCceeecCCCCcCCCCCCCCCcccccccccccCCcccccccCCCcee
Q 026012 99 GPMPRYPVTLLNLSIN-NKSEVSYEVSLNHGFNVPIRIRPDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYV 177 (245)
Q Consensus 99 g~~~~~paTlaEftl~-~~~~d~YDVSlVdGfNlP~~i~p~~~~~~~~~~~~C~~~~C~~dl~~~CP~~l~~~~~~g~~v 177 (245)
+.+++||+|||||||+ .+++|||||||||||||||+|.|+++.+ .|+..+|.+||+..||+|||++ .+|.||
T Consensus 78 g~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~------~C~~~~C~~d~~~~CP~~L~v~-~~g~vv 150 (218)
T smart00205 78 GWGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSG------DCKGAGCTADLNAQCPAELQVP-GGGSVV 150 (218)
T ss_pred CCCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCC------CcCCCcCCCcccccCCHHHccc-cCCccc
Confidence 8888999999999998 6788999999999999999999985433 6999999999999999999998 458899
Q ss_pred eecCCccccCCCCcccCC--CCCCCCCCCchhHHHHHhhccccccCCCCCCCCceeeCCCCceEEEecC
Q 026012 178 ACNSPCDALRDARFCCTE--NFSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244 (245)
Q Consensus 178 ~C~SaC~~~~~~~yCC~g--~~~~~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~~~~y~VtFCP 244 (245)
||+|+|.+|++|||||+| ++| ++|+|+.||++||++||+||+||+||++++|+|+++++|+|+|||
T Consensus 151 ~C~SaC~~f~~~~yCC~g~~~~~-~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 151 ACNSACTVFGTDQYCCTGGQNNP-ETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred ccccHhhccCCCcceecCCCCCC-CCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 999999999999999999 566 899999999999999999999999999999999988999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=7.9e-79 Score=535.90 Aligned_cols=205 Identities=34% Similarity=0.748 Sum_probs=188.7
Q ss_pred EEEEeCCCCceeceeec----------CCCCeeccCCCCceEEEEcCCCCc-eeEeeeeccCCC-CCCccccccCccCCC
Q 026012 26 LNIENQCSYTVWLAASP----------SSGDFNSEHAPGTLEIFSMPEPWT-GSIWARTKCSNN-ESFYFSCETGDCGTG 93 (245)
Q Consensus 26 ~tv~N~C~~tVwp~~~p----------~~~g~~L~~~~G~s~~~~vp~~Ws-GriwaRtgCs~~-~~g~~~C~TGdCg~g 93 (245)
|||+|+|+||||||+++ ..+||+| ++|++++|+||++|+ |||||||||+|| ..|+++|+||||+ |
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L--~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCg-g 77 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEA--AAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCG-G 77 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEec--CCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCC-c
Confidence 79999999999999954 2479999 999999999999996 999999999999 4699999999999 9
Q ss_pred ccccCCCCCCCCceEEEEEecCCCCceeeeeccCccCCCceeecCCCCcCCCCCCCCCcccccccccccCCcccccc-cC
Q 026012 94 QVDCQGPMPRYPVTLLNLSINNKSEVSYEVSLNHGFNVPIRIRPDGGTLVDRSGSSCPVVDCIADLSNVCAPELVAT-NK 172 (245)
Q Consensus 94 ~~~C~g~~~~~paTlaEftl~~~~~d~YDVSlVdGfNlP~~i~p~~~~~~~~~~~~C~~~~C~~dl~~~CP~~l~~~-~~ 172 (245)
.|+|++ ++.||+|||||+|+..++|||||||||||||||+|.|. . .|+.++|.+|||..||.|||++ +.
T Consensus 78 ~l~C~~-~g~pP~TlaEftL~~~~~D~YdVSlVDGfNlP~~i~P~-~--------~C~~~~C~~dln~~CP~~L~v~~~~ 147 (229)
T cd09219 78 GLTCEN-SDQPPASLAEFTLIGGKEDNYDISLVDGFNIPLNITNN-I--------TCPQPQCQVDLNVLCPALLRGPLDQ 147 (229)
T ss_pred eeecCC-CCCCCcceeeEEecCCCCceeEEEEecccccceEeccC-C--------CCCCCcccCCCcccCCHHHccccCC
Confidence 999996 78899999999998337899999999999999999992 1 5999999999999999999998 45
Q ss_pred CCceeeecCCccc-cCC--CCcccCC--CCCCCCCCC--chhHHHHHhhccccccCCCCCCC--CceeeCC--CCceEEE
Q 026012 173 NGSYVACNSPCDA-LRD--ARFCCTE--NFSGQACQP--NQYSKKFKQLCGLAHTYPADNNP--PTYSCGG--ANRYNVT 241 (245)
Q Consensus 173 ~g~~v~C~SaC~~-~~~--~~yCC~g--~~~~~~C~~--t~ys~~fK~~CP~AYsya~DD~t--stftC~~--~~~y~Vt 241 (245)
+|++|||||+|.+ |+. |||||+| ++| ++|+| ++||++||++||+||||||||++ |+|||++ +++|+||
T Consensus 148 ~g~~vaC~SaC~a~~~~~~~~yCC~g~~~~p-~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~It 226 (229)
T cd09219 148 KGVNLGCISPCNRDKNHDDSPSCCTGSHNKP-ETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVT 226 (229)
T ss_pred CCccceecCHhhhhccCCCCcccccCCCCCc-CCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEE
Confidence 7899999999999 655 9999999 667 99999 88999999999999999999999 6799997 6999999
Q ss_pred ecC
Q 026012 242 FCP 244 (245)
Q Consensus 242 FCP 244 (245)
|||
T Consensus 227 FCP 229 (229)
T cd09219 227 FCP 229 (229)
T ss_pred eCC
Confidence 998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=2.3e-76 Score=517.73 Aligned_cols=203 Identities=41% Similarity=0.889 Sum_probs=166.8
Q ss_pred eCCCCceeceeec-------CCCCeeccCCCCceEEEEcCCCCceeEeeeeccCCCCCCccccccCccCCCccccCCCCC
Q 026012 30 NQCSYTVWLAASP-------SSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYFSCETGDCGTGQVDCQGPMP 102 (245)
Q Consensus 30 N~C~~tVwp~~~p-------~~~g~~L~~~~G~s~~~~vp~~WsGriwaRtgCs~~~~g~~~C~TGdCg~g~~~C~g~~~ 102 (245)
|+|+|||||++++ ..+||+| ++|+++++.+|++|+|||||||+|++++.|.++|+||||+ |.++|++.++
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l--~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCg-g~~~C~~~~~ 77 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRL--DPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCG-GRLECNGAGG 77 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE---TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-ST-TBSSSSS---
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEc--CCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCC-cccccccccC
Confidence 9999999999976 2368999 9999999999999999999999999999999999999999 9999998788
Q ss_pred CCCceEEEEEec-CCCCceeeeeccCccCCCceeecCCCCcCCCCCCCCCcccccccccccCCcccccccCCCceeeecC
Q 026012 103 RYPVTLLNLSIN-NKSEVSYEVSLNHGFNVPIRIRPDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNS 181 (245)
Q Consensus 103 ~~paTlaEftl~-~~~~d~YDVSlVdGfNlP~~i~p~~~~~~~~~~~~C~~~~C~~dl~~~CP~~l~~~~~~g~~v~C~S 181 (245)
++|+|||||+|+ .+++|||||||||||||||+|+|.++ +.|+.++|.+||+..||.|||++..++ +|+|+|
T Consensus 78 ~~P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~-------~~C~~~~C~~di~~~CP~~l~v~~~~~-vv~C~S 149 (213)
T PF00314_consen 78 SPPATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGG-------SNCRSPGCPADINSWCPSELQVKNSDG-VVGCKS 149 (213)
T ss_dssp -SS--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSS-------SSSSSEEE-S-HHHHE-CCCEEETTSS-TTEE--
T ss_pred cccceeEEEEeccCCCcceEEEEeeeeecCChhhccCCC-------CccccccCccccccccchhheeeccCc-eeeecc
Confidence 999999999997 78899999999999999999999953 379999999999999999999987776 999999
Q ss_pred CccccCCCCcccCC--CCCCCCCCCchhHHHHHhhccccccCCCCCCCCceeeCCCCceEEEecC
Q 026012 182 PCDALRDARFCCTE--NFSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244 (245)
Q Consensus 182 aC~~~~~~~yCC~g--~~~~~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~~~~y~VtFCP 244 (245)
+|.++++++|||+| +.+ ++|++++|+++||++||+||+|||||++|+|+|+++++|+|||||
T Consensus 150 aC~~~~~~~~CC~g~~~~~-~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 150 ACDAFNTDEYCCRGAYNTP-DTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHHHH-SHHHHTTCCS-TT-SCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred cceeccCCccccccccCCC-cccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 99999999999999 566 899999999999999999999999999999999988999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=6.7e-58 Score=383.68 Aligned_cols=149 Identities=39% Similarity=0.829 Sum_probs=135.1
Q ss_pred EEEEeCCCCceeceeec------CCCCeeccCCCCceEEEEcCCCCceeEeeeeccCCCC-CCccccccCccCCCccccC
Q 026012 26 LNIENQCSYTVWLAASP------SSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNE-SFYFSCETGDCGTGQVDCQ 98 (245)
Q Consensus 26 ~tv~N~C~~tVwp~~~p------~~~g~~L~~~~G~s~~~~vp~~WsGriwaRtgCs~~~-~g~~~C~TGdCg~g~~~C~ 98 (245)
|||+|+|+||||||+++ ..+||+| ++|+++++.+|++|+|||||||+|++++ .|++.|+||||+ |+++|+
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L--~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCg-g~l~C~ 77 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFEL--NPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCN-GGLNCQ 77 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEec--CCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCC-ceeecC
Confidence 79999999999999965 4689999 9999999999999999999999999998 799999999999 999999
Q ss_pred CCCCCCCceEEEEEec-CCCCceeeeeccCccCCCceeecCCCCcCCCCCCCCCcccccccccccCCcccccccCCCcee
Q 026012 99 GPMPRYPVTLLNLSIN-NKSEVSYEVSLNHGFNVPIRIRPDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYV 177 (245)
Q Consensus 99 g~~~~~paTlaEftl~-~~~~d~YDVSlVdGfNlP~~i~p~~~~~~~~~~~~C~~~~C~~dl~~~CP~~l~~~~~~g~~v 177 (245)
+ ++.||+|||||||+ .+++|||||||||||||||+|+|+.+ .|+..+|
T Consensus 78 g-~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~--------~C~~~~C---------------------- 126 (157)
T cd09215 78 G-TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPG--------ECPTPIC---------------------- 126 (157)
T ss_pred C-CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCC--------CCCCCcc----------------------
Confidence 8 67799999999998 66889999999999999999999742 3443333
Q ss_pred eecCCccccCCCCcccCCCCCCCCCCCchhHHHHHhhccccccCCCCCCCCceeeCCCCceEEEec
Q 026012 178 ACNSPCDALRDARFCCTENFSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFC 243 (245)
Q Consensus 178 ~C~SaC~~~~~~~yCC~g~~~~~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~~~~y~VtFC 243 (245)
.. ||+||+|||||++|+|+|+++++|+|+||
T Consensus 127 -------------------------~~----------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 127 -------------------------AA----------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred -------------------------cc----------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 31 99999999999999999998899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=8.8e-53 Score=351.08 Aligned_cols=150 Identities=41% Similarity=0.857 Sum_probs=135.4
Q ss_pred EEEEeCCCCceeceeecCCCCeeccCCCCceEEEEcCCC-CceeEeeeeccCCCCCCccccccCccCCCccccCCCCCCC
Q 026012 26 LNIENQCSYTVWLAASPSSGDFNSEHAPGTLEIFSMPEP-WTGSIWARTKCSNNESFYFSCETGDCGTGQVDCQGPMPRY 104 (245)
Q Consensus 26 ~tv~N~C~~tVwp~~~p~~~g~~L~~~~G~s~~~~vp~~-WsGriwaRtgCs~~~~g~~~C~TGdCg~g~~~C~g~~~~~ 104 (245)
|||+|||+||||||++|..+||+| ++|+++++++|++ |+|||||||+|++++.|++.|+||||+ |+++|++ ++.|
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L--~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCg-g~l~C~~-~g~p 76 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQL--NPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCG-GVLSCTG-SGKP 76 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeC--CCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCC-CeeecCC-CCCC
Confidence 799999999999999998899999 9999999999998 999999999999999999999999999 9999996 7789
Q ss_pred CceEEEEEecCCCCceeeeeccCccCCCceeecCCCCcCCCCCCCCCcccccccccccCCcccccccCCCceeeecCCcc
Q 026012 105 PVTLLNLSINNKSEVSYEVSLNHGFNVPIRIRPDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYVACNSPCD 184 (245)
Q Consensus 105 paTlaEftl~~~~~d~YDVSlVdGfNlP~~i~p~~~~~~~~~~~~C~~~~C~~dl~~~CP~~l~~~~~~g~~v~C~SaC~ 184 (245)
|+||+||+|+.+++||||||+||||||||.|+|++. .|+.++|..
T Consensus 77 p~Tl~E~tl~~~~~d~YdISlVdG~NlP~~i~P~~~--------~C~~~~C~~--------------------------- 121 (151)
T cd09217 77 PATLAEYTLNQSGQDFYDISLVDGFNVPMDFSPTGG--------GCHAIPCAA--------------------------- 121 (151)
T ss_pred CceeEEEEecCCCCccEEEEeecccccceEEecCCC--------CCCCCcCCC---------------------------
Confidence 999999999744779999999999999999999732 354333332
Q ss_pred ccCCCCcccCCCCCCCCCCCchhHHHHHhhccccccCCCCCCCCceeeCCCCceEEEecC
Q 026012 185 ALRDARFCCTENFSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTFCP 244 (245)
Q Consensus 185 ~~~~~~yCC~g~~~~~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~~~~y~VtFCP 244 (245)
+ ||+||+|++|| .++|+|+.+++|+|+|||
T Consensus 122 ---------------d--------------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------------N--------------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------------C--------------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999995 799999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=1.3e-49 Score=332.51 Aligned_cols=145 Identities=34% Similarity=0.600 Sum_probs=129.6
Q ss_pred EEEEeCCCCceeceeec-------CCCCeeccCCCCceEEEEcCCCCceeEeeeeccCCCCCCccccccCccCCCccccC
Q 026012 26 LNIENQCSYTVWLAASP-------SSGDFNSEHAPGTLEIFSMPEPWTGSIWARTKCSNNESFYFSCETGDCGTGQVDCQ 98 (245)
Q Consensus 26 ~tv~N~C~~tVwp~~~p-------~~~g~~L~~~~G~s~~~~vp~~WsGriwaRtgCs~~~~g~~~C~TGdCg~g~~~C~ 98 (245)
|||+|+|+|||||++++ ..+||+| ++|++++|+||.+|+||||+||+|+++..+++.|+||||+ + +.|.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L--~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcg-g-~~c~ 76 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGL--APGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPG-V-VNPT 76 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCccccc--CCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCC-C-cccC
Confidence 79999999999999965 2479999 9999999999999999999999999998899999999998 6 6888
Q ss_pred CCCCCCCceEEEEEec-CCCCceeeeeccCccCCCceeecCCCCcCCCCCCCCCcccccccccccCCcccccccCCCcee
Q 026012 99 GPMPRYPVTLLNLSIN-NKSEVSYEVSLNHGFNVPIRIRPDGGTLVDRSGSSCPVVDCIADLSNVCAPELVATNKNGSYV 177 (245)
Q Consensus 99 g~~~~~paTlaEftl~-~~~~d~YDVSlVdGfNlP~~i~p~~~~~~~~~~~~C~~~~C~~dl~~~CP~~l~~~~~~g~~v 177 (245)
+.++.||+|||||||+ .+++||||||+||||||||.|+|+.+.+
T Consensus 77 g~~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g----------------------------------- 121 (153)
T cd08961 77 DPNRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDG----------------------------------- 121 (153)
T ss_pred CCCCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCC-----------------------------------
Confidence 7788999999999998 5688999999999999999999975421
Q ss_pred eecCCccccCCCCcccCCCCCCCCCCCchhHHHHHhhccccccCCCCCCCCceeeCCCCceEEEe
Q 026012 178 ACNSPCDALRDARFCCTENFSGQACQPNQYSKKFKQLCGLAHTYPADNNPPTYSCGGANRYNVTF 242 (245)
Q Consensus 178 ~C~SaC~~~~~~~yCC~g~~~~~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~~~~y~VtF 242 (245)
.|++.. |||+|||||..++|+|+.+.+|.|+|
T Consensus 122 -----------------------~C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 122 -----------------------TCLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred -----------------------Cccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 133211 99999999988999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.05 E-value=0.00011 Score=61.91 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCceEEEEEec-CCCCceeeeeccCcc
Q 026012 104 YPVTLLNLSIN-NKSEVSYEVSLNHGF 129 (245)
Q Consensus 104 ~paTlaEftl~-~~~~d~YDVSlVdGf 129 (245)
.|.|..|++|. .+.+.|||+|.|.|.
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGd 98 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGD 98 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCC
Confidence 68999999998 567899999999997
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.89 E-value=0.053 Score=51.49 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=48.5
Q ss_pred CCCCceEEEEcCCCCceeEeeeeccCCCCCCccccccCccCCCccccC-CCC-CCCCc----eEEEEEecCCCCceeeee
Q 026012 51 HAPGTLEIFSMPEPWTGSIWARTKCSNNESFYFSCETGDCGTGQVDCQ-GPM-PRYPV----TLLNLSINNKSEVSYEVS 124 (245)
Q Consensus 51 ~~~G~s~~~~vp~~WsGriwaRtgCs~~~~g~~~C~TGdCg~g~~~C~-g~~-~~~pa----TlaEftl~~~~~d~YDVS 124 (245)
..+|++.++.+|. ++||||=..+=. -.|. ..+ + ..+.-. ... .-|-. ..+|||++ +.+-|=++|
T Consensus 59 ~~~G~~~tvtiP~-~sgRiyfS~g~~----L~F~-~~~--~-~~lv~Ps~~NpsDpN~~~~~~f~EfT~n-~~gl~~N~T 128 (353)
T cd09216 59 PSPGDTTTVLPPR-MSGRIYFSLGSK----LRFK-VVT--N-PALVQPAGWNPSDPNFNILHDWVEFTFN-DAGLFCNTT 128 (353)
T ss_pred CCCCCceEEcccc-cCcEEEEEcCCe----eEEE-ecC--C-CcccCCCCCCCCCCCccceEEEEEEEec-CCceEeccc
Confidence 3678889999998 999999433210 0111 011 1 112111 111 11111 34899998 455789999
Q ss_pred ccCccCCCceeecCC
Q 026012 125 LNHGFNVPIRIRPDG 139 (245)
Q Consensus 125 lVdGfNlP~~i~p~~ 139 (245)
.||-|.+||.|+-.+
T Consensus 129 ~VD~~~~P~~l~l~~ 143 (353)
T cd09216 129 QVDMFSAPLAIGLRG 143 (353)
T ss_pred ceeeeccceEEEEec
Confidence 999999999998665
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=95.47 E-value=0.11 Score=49.55 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=49.6
Q ss_pred CCCceEEEEcCCCCceeEeeeeccCCCCCCccccccCccCCCccccCCCC-CCCC----ceEEEEEecCCCCceeeeecc
Q 026012 52 APGTLEIFSMPEPWTGSIWARTKCSNNESFYFSCETGDCGTGQVDCQGPM-PRYP----VTLLNLSINNKSEVSYEVSLN 126 (245)
Q Consensus 52 ~~G~s~~~~vp~~WsGriwaRtgCs~~~~g~~~C~TGdCg~g~~~C~g~~-~~~p----aTlaEftl~~~~~d~YDVSlV 126 (245)
.+|++.+++||.-++||||=..+=. -.|- ...+ +.+.++=.... .-|- -..+|||++ ..+-|=++|.|
T Consensus 61 ~~G~~~titiP~i~sgRIyfS~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n-~~~l~~N~S~V 133 (369)
T cd09220 61 APGSTTTVTIPILAGGRIWFSVDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYN-SGQLYANISYV 133 (369)
T ss_pred CCCCceeEEcccccceEEEEEcCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEec-CCceEecccce
Confidence 4688999999998999999432210 0111 1111 21111111110 1111 134899998 45678999999
Q ss_pred CccCCCceeecCCC
Q 026012 127 HGFNVPIRIRPDGG 140 (245)
Q Consensus 127 dGfNlP~~i~p~~~ 140 (245)
|-|.+||.|+-.+.
T Consensus 134 D~~~~P~~l~l~~~ 147 (369)
T cd09220 134 DFVGLPLGLSLTTT 147 (369)
T ss_pred eeeccCeEEEEEcc
Confidence 99999999986643
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.77 E-value=1.6 Score=34.02 Aligned_cols=26 Identities=38% Similarity=0.316 Sum_probs=14.0
Q ss_pred CCCcchhHHH-HH-HHHHHhhcccceEE
Q 026012 1 MENKASISSL-LL-LLLIISGGQSEVIL 26 (245)
Q Consensus 1 ~~~~~~~~~~-~~-~~~~~~~~~~~~t~ 26 (245)
|+||+.+-.. || +|||+++..+++.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 9999865422 22 44455554445544
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=72.66 E-value=2.8 Score=39.40 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=28.2
Q ss_pred eEEEEEecCCCCceeeeeccCccCCCceeecCCC
Q 026012 107 TLLNLSINNKSEVSYEVSLNHGFNVPIRIRPDGG 140 (245)
Q Consensus 107 TlaEftl~~~~~d~YDVSlVdGfNlP~~i~p~~~ 140 (245)
..+|||++ ..+-|-++|.||-|.|||.|+-.+.
T Consensus 124 df~EFT~n-~~~l~~N~T~VD~~~lPl~l~l~~~ 156 (319)
T cd09214 124 DFIEFTYN-ATGLWGNTTRVDAFGIPLTLRLIGK 156 (319)
T ss_pred EEEEEEec-CCceEecccceeeeccCeEEEEEcC
Confidence 34899998 5778999999999999999987653
No 13
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=67.18 E-value=5.6 Score=37.39 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred chhHHHHHhhcc--ccccCCCCCC
Q 026012 205 NQYSKKFKQLCG--LAHTYPADNN 226 (245)
Q Consensus 205 t~ys~~fK~~CP--~AYsya~DD~ 226 (245)
+.|++++++.-. .||.|||||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 589999999997 7899999995
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=66.53 E-value=16 Score=28.90 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=34.0
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWA 71 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwa 71 (245)
...+|+|+|.-.-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF--EPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 20 KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF--EPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred cEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE--CCCCeEEEEEEEccCceEEEc
Confidence 46899999999999999972 34444566 888888888532 22345554
No 15
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=65.66 E-value=17 Score=28.78 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=33.9
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWA 71 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwa 71 (245)
...+|+|+|.-.-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|
T Consensus 20 ~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF--EPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 20 EAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF--EPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred CEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE--CCCCeEEEEEEEccCceEEEc
Confidence 36899999999999999972 34445566 888888888532 22344554
No 16
>PRK13203 ureB urease subunit beta; Reviewed
Probab=62.88 E-value=14 Score=29.25 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=33.4
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWA 71 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwa 71 (245)
...+|+|+|...-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|
T Consensus 20 ~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF--EPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 20 ETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF--EPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred CEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE--CCCCeEEEEEEEccCceEEEc
Confidence 36899999999999999972 34445566 788888887532 22334554
No 17
>PRK13202 ureB urease subunit beta; Reviewed
Probab=61.54 E-value=22 Score=28.22 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEee
Q 026012 23 EVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWA 71 (245)
Q Consensus 23 ~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwa 71 (245)
..+|+|+|...-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|
T Consensus 22 ~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF--EPG~~k~V~LV~~gG~r~v~G 93 (104)
T PRK13202 22 RLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF--EPGIPQIVGLVPLGGRREVPG 93 (104)
T ss_pred eEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE--CCCCeEEEEEEEccCCeEEEc
Confidence 5799999999999999972 34444566 788888887532 22344554
No 18
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=55.97 E-value=13 Score=35.79 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred CchhHHHHHhhcc--ccccCCCCCC
Q 026012 204 PNQYSKKFKQLCG--LAHTYPADNN 226 (245)
Q Consensus 204 ~t~ys~~fK~~CP--~AYsya~DD~ 226 (245)
-+.|+++++..-+ .+|.|||||-
T Consensus 320 tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 320 TNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred chHHHHHHHHhccCCCeeccccccc
Confidence 3589999999987 7899999996
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=53.40 E-value=34 Score=28.44 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=34.7
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEeee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWAR 72 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwaR 72 (245)
...+|+|+|.-.-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|-
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF--EPG~~k~V~LV~igG~r~V~Gf 93 (136)
T PRK13201 20 PETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF--EPGDKKEVQLVEYAGKRKIFGF 93 (136)
T ss_pred CEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE--CCCCeEEEEEEEccCceEEEcc
Confidence 36899999999999999972 34445566 888888888533 224456543
No 20
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=52.35 E-value=15 Score=35.16 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred chhHHHHHhhcc--ccccCCCCCC
Q 026012 205 NQYSKKFKQLCG--LAHTYPADNN 226 (245)
Q Consensus 205 t~ys~~fK~~CP--~AYsya~DD~ 226 (245)
+.|+++++..-. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 489999999987 6899999995
No 21
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=52.18 E-value=25 Score=27.77 Aligned_cols=48 Identities=10% Similarity=0.239 Sum_probs=28.8
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWA 71 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwa 71 (245)
...+|+|+|.-.-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|
T Consensus 19 ~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRF--EPG~~k~V~LV~~gG~r~v~G 91 (100)
T PF00699_consen 19 ERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRF--EPGDTKEVELVPIGGNRRVYG 91 (100)
T ss_dssp EEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE---TT-EEEEEEEE-STT-EE-S
T ss_pred cEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEE--CCCCcEEEEEEEccCCeEEEc
Confidence 36889999999999999972 34555666 888888888532 22344554
No 22
>PRK13204 ureB urease subunit beta; Reviewed
Probab=51.95 E-value=35 Score=29.02 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=35.0
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEeee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWAR 72 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwaR 72 (245)
...+|+|+|.-.-+|++|.+ |.++..+. +||+++++.+-. +=..+|+|-
T Consensus 43 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF--EPG~~k~V~LV~~gG~r~V~Gf 116 (159)
T PRK13204 43 PRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRF--EPGDEKEVTLVPFAGKRFIFGF 116 (159)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE--CCCCeeEEEEEEccCceEEEcc
Confidence 46899999999999999972 34445566 888888888533 234456653
No 23
>PRK13198 ureB urease subunit beta; Reviewed
Probab=47.80 E-value=44 Score=28.40 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=34.1
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWA 71 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwa 71 (245)
...+|+|+|.-.-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|
T Consensus 48 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF--EPG~~k~V~LV~~gG~r~V~G 120 (158)
T PRK13198 48 PVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRF--EPGDETEVPLIPFGGKQTLYG 120 (158)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEee--CCCCeeEEEEEEccCceEEEc
Confidence 46899999999999999972 34445566 788888887532 22345665
No 24
>PRK13205 ureB urease subunit beta; Reviewed
Probab=45.33 E-value=36 Score=28.90 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.1
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcC
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMP 62 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp 62 (245)
...+|+|+|.-.-+|++|.+ |.++..+. +||+++++.+-
T Consensus 20 ~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF--EPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL--EPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE--CCCCeEEEEEE
Confidence 46899999999999999972 34444566 78888888753
No 25
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=44.08 E-value=49 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=33.7
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWA 71 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwa 71 (245)
...+++|+|.-.-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|
T Consensus 129 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRF--EPG~~k~V~LV~~gG~r~v~G 201 (208)
T PRK13192 129 PAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRF--EPGETKEVRLVPIGGARVVIG 201 (208)
T ss_pred CEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeE--CCCCeeEEEEEEccCceEEEc
Confidence 36899999999999999972 34445566 788888887532 22345554
No 26
>PRK13986 urease subunit alpha; Provisional
Probab=42.92 E-value=52 Score=29.55 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=35.5
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEcCC-CCceeEeee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSMPE-PWTGSIWAR 72 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~vp~-~WsGriwaR 72 (245)
...+++|+|.-.-+|++|.+ |.++..+. +||+++++.+-+ +=..+|+|-
T Consensus 125 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRF--EPG~~k~V~LV~~gG~r~v~G~ 198 (225)
T PRK13986 125 KAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRF--EPGEEKSVELIDIGGNRRIFGF 198 (225)
T ss_pred cEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeE--CCCCeeEEEEEEccCceEEecC
Confidence 46899999999999999972 34555666 888888888532 334456653
No 27
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=35.39 E-value=37 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCCcchhHHHHHHHHHHhhcccceEEEEEeCCCCcee
Q 026012 1 MENKASISSLLLLLLIISGGQSEVILNIENQCSYTVW 37 (245)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~t~tv~N~C~~tVw 37 (245)
|.+-++++.+-.+|..+.+.. +...+=.|+|+|+--
T Consensus 1 M~~~~K~~~~a~vl~~Lt~CT-G~v~Nk~knCsYDYl 36 (56)
T PF13978_consen 1 MKKFIKIAVVAAVLATLTACT-GHVENKEKNCSYDYL 36 (56)
T ss_pred ChhHHHHHHHHHHHHHHhhcc-ceeeccCCCCcceee
Confidence 555555554333444444433 778888899998743
No 28
>PHA03094 dUTPase; Provisional
Probab=32.33 E-value=45 Score=27.49 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=22.4
Q ss_pred eeccCCCCceEE------EEcCCCCceeEeeeeccC
Q 026012 47 FNSEHAPGTLEI------FSMPEPWTGSIWARTKCS 76 (245)
Q Consensus 47 ~~L~~~~G~s~~------~~vp~~WsGriwaRtgCs 76 (245)
+.| .|++... +.+|.+|.|.|++|.+-.
T Consensus 36 ~~i--~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla 69 (144)
T PHA03094 36 YTV--PPKERILVKTDISLSIPKFCYGRIAPRSGLS 69 (144)
T ss_pred eEE--CCCCEEEEEcCeEEEcCCCEEEEEEcccccc
Confidence 456 8888776 678999999999997543
No 29
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=25.88 E-value=22 Score=29.92 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=7.9
Q ss_pred ccCccCCCce
Q 026012 125 LNHGFNVPIR 134 (245)
Q Consensus 125 lVdGfNlP~~ 134 (245)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998555
No 30
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=24.64 E-value=1.8e+02 Score=23.15 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=34.7
Q ss_pred cceEEEEEeCCCCceeceee------------------------cCCCCeeccCCCCceEEEEc-CCCCceeEeeee
Q 026012 22 SEVILNIENQCSYTVWLAAS------------------------PSSGDFNSEHAPGTLEIFSM-PEPWTGSIWART 73 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVwp~~~------------------------p~~~g~~L~~~~G~s~~~~v-p~~WsGriwaRt 73 (245)
..++++|.|.=.-+|.+|.+ |.++-.+. +||+.+++++ |-+=.-+|||-.
T Consensus 20 ~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRF--EPG~~k~V~LV~~~G~r~v~Gf~ 94 (106)
T COG0832 20 PTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRF--EPGDEKEVELVPLGGKREVYGFN 94 (106)
T ss_pred cceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEee--CCCCccEEEEEEccCceEEeccc
Confidence 36889999999999999972 23444556 7888888875 333344567643
No 31
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.57 E-value=1.7e+02 Score=23.18 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=25.9
Q ss_pred ceEEEEEeCCCCceeceee-cCCC-----C-eeccCCCCceEEE
Q 026012 23 EVILNIENQCSYTVWLAAS-PSSG-----D-FNSEHAPGTLEIF 59 (245)
Q Consensus 23 ~~t~tv~N~C~~tVwp~~~-p~~~-----g-~~L~~~~G~s~~~ 59 (245)
.+-|+|-|+-++.|++++. .... | ++| +||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i--~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRI--DPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEe--CCCceEEe
Confidence 3568999999999999982 2122 3 577 88887666
No 32
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=22.97 E-value=1.9e+02 Score=23.78 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=31.9
Q ss_pred ceEEEEEeCCCCceeceeecCCCC----eeccCCCCceEEEEcCCCCceeEee
Q 026012 23 EVILNIENQCSYTVWLAASPSSGD----FNSEHAPGTLEIFSMPEPWTGSIWA 71 (245)
Q Consensus 23 ~~t~tv~N~C~~tVwp~~~p~~~g----~~L~~~~G~s~~~~vp~~WsGriwa 71 (245)
...|+|+|+.+.+|-+-+.-..|. ..| +||+...++ .+.|..|=
T Consensus 8 ~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l--~pg~~~~~~---Ty~~H~W~ 55 (141)
T cd05468 8 PSTVRFVNRTDRPVELYWIDYDGKPVSYGTL--QPGETVRQN---TYVGHPWL 55 (141)
T ss_pred eEEEEEEeCCCCeEEEEEECCCCCEEEeeee--CCCCEEeec---ccCCCcEE
Confidence 478999999999999888543332 367 999986553 46677773
No 33
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=22.87 E-value=1.5e+02 Score=21.16 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=9.9
Q ss_pred cceEEEEEeCCCCcee
Q 026012 22 SEVILNIENQCSYTVW 37 (245)
Q Consensus 22 ~~~t~tv~N~C~~tVw 37 (245)
...+++|.|....++-
T Consensus 7 ~~~~~tv~N~g~~~~~ 22 (78)
T PF10633_consen 7 VTVTLTVTNTGTAPLT 22 (78)
T ss_dssp EEEEEEEE--SSS-BS
T ss_pred EEEEEEEEECCCCcee
Confidence 4578999999987654
No 34
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=22.76 E-value=92 Score=22.11 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=17.2
Q ss_pred eeccCCCCceEEEEcCCCC-----ceeEe
Q 026012 47 FNSEHAPGTLEIFSMPEPW-----TGSIW 70 (245)
Q Consensus 47 ~~L~~~~G~s~~~~vp~~W-----sGriw 70 (245)
|+| .+|+..++.+..+. +|++|
T Consensus 2 ~~L--~~g~~~~lr~~~~~~l~v~~G~vW 28 (63)
T PF11142_consen 2 FEL--APGETLSLRAAAGQRLRVESGRVW 28 (63)
T ss_pred EEe--CCCceEEeEcCCCcEEEEccccEE
Confidence 678 88998888887763 58888
No 35
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=20.11 E-value=69 Score=22.38 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=16.0
Q ss_pred eEEEEEeCCC-CceeceeecCCCCeec
Q 026012 24 VILNIENQCS-YTVWLAASPSSGDFNS 49 (245)
Q Consensus 24 ~t~tv~N~C~-~tVwp~~~p~~~g~~L 49 (245)
.=+.|+|.-. |.|||...+.+.|++.
T Consensus 12 ~f~VlvN~e~QySlWP~~~~vP~GW~~ 38 (54)
T PF03621_consen 12 TFLVLVNDEGQYSLWPAFRPVPAGWRA 38 (54)
T ss_dssp -EEEEEETT-SEEEEETTS---TTEEE
T ss_pred eEEEEEcCCCCeeeCcCCCCCCCCcce
Confidence 3456778776 7999998766667765
Done!