Query 026013
Match_columns 244
No_of_seqs 118 out of 158
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 02:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 99.7 2.6E-16 5.7E-21 117.4 8.1 81 122-207 1-92 (92)
2 KOG0710 Molecular chaperone (s 99.6 2.1E-16 4.5E-21 134.8 6.1 92 114-210 78-182 (196)
3 cd06497 ACD_alphaA-crystallin_ 99.6 5.3E-15 1.1E-19 111.6 6.8 76 124-207 4-86 (86)
4 cd06471 ACD_LpsHSP_like Group 99.5 2E-14 4.2E-19 106.8 7.7 79 122-207 2-93 (93)
5 cd06478 ACD_HspB4-5-6 Alpha-cr 99.5 4.1E-14 8.9E-19 105.7 6.6 77 125-207 2-83 (83)
6 COG0071 IbpA Molecular chapero 99.5 1.3E-13 2.9E-18 111.1 9.1 98 107-210 24-135 (146)
7 PF00011 HSP20: Hsp20/alpha cr 99.5 1.2E-13 2.7E-18 102.7 8.1 81 124-210 1-90 (102)
8 cd06479 ACD_HspB7_like Alpha c 99.5 7.1E-14 1.5E-18 105.5 6.0 77 124-207 2-81 (81)
9 PRK10743 heat shock protein Ib 99.5 1.8E-13 3.9E-18 111.9 8.2 87 116-210 30-126 (137)
10 cd06498 ACD_alphaB-crystallin_ 99.4 3.9E-13 8.4E-18 101.2 7.0 75 125-208 2-84 (84)
11 cd06475 ACD_HspB1_like Alpha c 99.4 3.8E-13 8.2E-18 101.5 6.5 78 123-206 3-85 (86)
12 PRK11597 heat shock chaperone 99.4 6.4E-13 1.4E-17 109.9 7.2 81 122-210 34-124 (142)
13 cd06464 ACD_sHsps-like Alpha-c 99.4 1E-12 2.2E-17 93.0 6.9 78 124-207 1-88 (88)
14 cd06470 ACD_IbpA-B_like Alpha- 99.4 1.5E-12 3.2E-17 97.8 7.8 78 122-207 2-90 (90)
15 cd06476 ACD_HspB2_like Alpha c 99.3 2.4E-12 5.2E-17 97.1 6.3 77 125-207 2-83 (83)
16 cd06526 metazoan_ACD Alpha-cry 99.3 2E-12 4.3E-17 95.2 5.5 72 130-207 7-83 (83)
17 cd06477 ACD_HspB3_Like Alpha c 99.3 4.6E-12 9.9E-17 96.2 6.2 76 125-206 2-82 (83)
18 cd06481 ACD_HspB9_like Alpha c 99.3 1.2E-11 2.7E-16 93.5 6.4 76 126-207 3-87 (87)
19 cd06482 ACD_HspB10 Alpha cryst 98.9 2.1E-09 4.6E-14 82.5 6.4 72 129-206 7-86 (87)
20 cd00298 ACD_sHsps_p23-like Thi 98.8 1.7E-08 3.6E-13 67.8 7.4 77 125-207 1-80 (80)
21 cd06480 ACD_HspB8_like Alpha-c 98.6 1.1E-07 2.4E-12 73.9 6.4 74 128-207 13-91 (91)
22 cd06469 p23_DYX1C1_like p23_li 98.1 3.3E-05 7.2E-10 55.0 8.3 69 125-210 1-71 (78)
23 KOG3591 Alpha crystallins [Pos 98.0 2E-05 4.4E-10 67.4 7.6 85 119-211 61-152 (173)
24 cd06463 p23_like Proteins cont 97.5 0.0012 2.6E-08 45.8 8.6 74 125-210 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 97.3 0.0016 3.6E-08 56.9 9.0 74 122-210 93-170 (177)
26 cd06466 p23_CS_SGT1_like p23_l 96.5 0.021 4.5E-07 40.9 7.5 75 124-210 1-77 (84)
27 PF04969 CS: CS domain; Inter 94.4 0.65 1.4E-05 32.0 8.9 74 122-207 2-79 (79)
28 PF08190 PIH1: pre-RNA process 92.5 0.7 1.5E-05 40.8 8.0 65 127-206 258-327 (328)
29 cd06467 p23_NUDC_like p23_like 82.5 14 0.0003 26.5 8.0 72 124-210 2-77 (85)
30 cd06465 p23_hB-ind1_like p23_l 80.6 14 0.00031 28.3 7.9 77 122-209 2-78 (108)
31 cd06489 p23_CS_hSgt1_like p23_ 55.0 79 0.0017 22.9 7.8 75 124-210 1-77 (84)
32 cd06468 p23_CacyBP p23_like do 39.2 1.5E+02 0.0033 21.6 8.4 76 121-210 2-85 (92)
33 PRK09965 3-phenylpropionate di 38.2 56 0.0012 25.0 4.0 32 178-209 66-105 (106)
34 cd06493 p23_NUDCD1_like p23_NU 32.8 2E+02 0.0043 21.1 8.1 72 124-210 2-77 (85)
35 cd03474 Rieske_T4moC Toluene-4 32.1 75 0.0016 24.0 3.8 33 178-210 65-104 (108)
36 PF14913 DPCD: DPCD protein fa 31.4 1.8E+02 0.0039 26.4 6.6 75 126-207 92-168 (194)
37 cd06494 p23_NUDCD2_like p23-li 27.6 1.2E+02 0.0026 23.5 4.3 26 180-205 20-45 (93)
38 PF01954 DUF104: Protein of un 27.3 49 0.0011 24.4 2.0 13 190-202 3-15 (60)
39 cd06494 p23_NUDCD2_like p23-li 25.5 3.2E+02 0.007 21.2 8.1 73 122-210 7-83 (93)
40 PF13570 PQQ_3: PQQ-like domai 24.7 1E+02 0.0022 19.5 2.9 25 177-204 3-27 (40)
41 COG4744 Uncharacterized conser 23.0 1.2E+02 0.0027 25.7 3.8 64 180-244 46-113 (121)
42 PF13854 Kelch_5: Kelch motif 22.4 1.2E+02 0.0026 19.6 3.0 27 157-186 16-42 (42)
43 PF13598 DUF4139: Domain of un 21.8 2.8E+02 0.0061 24.6 6.1 87 104-190 200-306 (317)
44 PF07908 D-aminoacyl_C: D-amin 21.4 1.1E+02 0.0023 21.3 2.7 19 185-203 13-31 (48)
45 KOG2465 Uncharacterized conser 20.8 37 0.00079 33.3 0.3 22 107-128 91-113 (390)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.66 E-value=2.6e-16 Score=117.42 Aligned_cols=81 Identities=28% Similarity=0.417 Sum_probs=65.6
Q ss_pred ccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc---------cccccCCeeeeeCCCCCCcc
Q 026013 122 DVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS---------LDELELDMWRFRLPESTRPE 190 (244)
Q Consensus 122 dVDVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d---------ede~e~D~WRFRLPENA~~E 190 (244)
+|||.||.++|...+|+|| ++++++++ +++ ++|.++|++..... |........+|+||++++++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v---~~~--~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~ 75 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEV---EDG--RVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADAD 75 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEE---eCC--CEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHH
Confidence 5899999999999999999 89999995 654 57888887643210 11122334489999999999
Q ss_pred ceeeEeeCCeEEEEeeC
Q 026013 191 LASAVFEDGELIVTVPK 207 (244)
Q Consensus 191 ~VsA~~eDGVLtVTVPK 207 (244)
.|+|.|+||+|+||+||
T Consensus 76 ~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 76 EVKAFLENGVLTVTVPK 92 (92)
T ss_pred HCEEEEECCEEEEEecC
Confidence 99999999999999998
No 2
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-16 Score=134.83 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=72.8
Q ss_pred cccCCCCCccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-----------cccccCCeee
Q 026013 114 ELPFRSDADVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-----------LDELELDMWR 180 (244)
Q Consensus 114 ELPf~AdTdVDVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d-----------ede~e~D~WR 180 (244)
+.+-.+..+.+++|++++|.|.+|+|| ++++|+++ +++ ++++++|++...++ ++..+.++.+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~---~~~--~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~ 152 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEV---EDE--KVLTISGERKKEEEESGSGKKWKRVERKLGKFKRR 152 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEe---ccC--cEEEEecccccccccccCCccceeehhcccceEee
Confidence 344444555556999999999999999 89999996 886 68999999865321 1112222339
Q ss_pred eeCCCCCCccceeeEeeCCeEEEEeeCCCC
Q 026013 181 FRLPESTRPELASAVFEDGELIVTVPKGGG 210 (244)
Q Consensus 181 FRLPENA~~E~VsA~~eDGVLtVTVPK~~~ 210 (244)
|+||+|++.|.|+|.|+||||+|||||..+
T Consensus 153 ~~lPenv~~d~ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 153 FELPENVDVDEIKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred ecCCccccHHHHHHHhhCCeEEEEEecccc
Confidence 999999999999999999999999999877
No 3
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.57 E-value=5.3e-15 Score=111.55 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=61.6
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccccc----CCeeeeeCCCCCCccceeeEe-
Q 026013 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELE----LDMWRFRLPESTRPELASAVF- 196 (244)
Q Consensus 124 DVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e----~D~WRFRLPENA~~E~VsA~~- 196 (244)
+++|++++|...+|+|| +++++|++ ++ +.|.++|++... +++.. ...++|+||+++++|.|+|.|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v---~~---~~L~I~g~~~~~--~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKV---LD---DYVEIHGKHSER--QDDHGYISREFHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEE---EC---CEEEEEEEEcce--eCCCCEEEEEEEEEEECCCCCChHHeEEEeC
Confidence 58999999999999999 89999996 66 468888865321 11111 145599999999999999999
Q ss_pred eCCeEEEEeeC
Q 026013 197 EDGELIVTVPK 207 (244)
Q Consensus 197 eDGVLtVTVPK 207 (244)
+||+|+||+||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 4
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.54 E-value=2e-14 Score=106.80 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=62.3
Q ss_pred ccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccc-----------cccCCeeeeeCCCCCC
Q 026013 122 DVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLD-----------ELELDMWRFRLPESTR 188 (244)
Q Consensus 122 dVDVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~ded-----------e~e~D~WRFRLPENA~ 188 (244)
.+||.|+.++|++.+|+|| ++++++++ ++ +.|.++|++....++. .......+|+|| ++.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~---~~---~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~ 74 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDY---KD---GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVD 74 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEE---EC---CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCC
Confidence 5899999999999999999 89999985 65 4688888764321111 112234478998 799
Q ss_pred ccceeeEeeCCeEEEEeeC
Q 026013 189 PELASAVFEDGELIVTVPK 207 (244)
Q Consensus 189 ~E~VsA~~eDGVLtVTVPK 207 (244)
++.++|.|.||+|+||+||
T Consensus 75 ~~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 75 EEEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHHCEEEEECCEEEEEEcC
Confidence 9999999999999999998
No 5
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.50 E-value=4.1e-14 Score=105.71 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=59.8
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc--ccCCeeeeeCCCCCCccceeeEe-eCC
Q 026013 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE--LELDMWRFRLPESTRPELASAVF-EDG 199 (244)
Q Consensus 125 VkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede--~e~D~WRFRLPENA~~E~VsA~~-eDG 199 (244)
++++.++|...+|+|| +++++|++ ++ +.|.++|++....++.. ......+|+||++++++.|+|.| .||
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v---~~---~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dG 75 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKV---LG---DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADG 75 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEE---EC---CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCC
Confidence 6799999999999999 89999996 65 35777776432101000 01145599999999999999999 799
Q ss_pred eEEEEeeC
Q 026013 200 ELIVTVPK 207 (244)
Q Consensus 200 VLtVTVPK 207 (244)
+|+||+||
T Consensus 76 vL~I~~PK 83 (83)
T cd06478 76 VLTISGPR 83 (83)
T ss_pred EEEEEecC
Confidence 99999998
No 6
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-13 Score=111.11 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=74.6
Q ss_pred chhhhhhcccCC---CCCccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc---------cc
Q 026013 107 HIFTRVLELPFR---SDADVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS---------LD 172 (244)
Q Consensus 107 HvFsrVLELPf~---AdTdVDVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d---------ed 172 (244)
++|.-...++.. ..-+||+.|+.+.|+.++|+|| +++|.+++ +++ .|.+.|++...+. +.
T Consensus 24 ~~~~~~~~~~~~~~~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~---~~~---~l~I~g~~~~~~~~~~~~~~~~e~ 97 (146)
T COG0071 24 RLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGVDKEDIEITV---EGN---TLTIRGEREEEEEEEEEGYLRRER 97 (146)
T ss_pred hhhhhhhcccccccCCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEE---ECC---EEEEEEEecccccccCCceEEEEE
Confidence 344444444444 3457999999999999999999 89999995 774 5888887754210 11
Q ss_pred cccCCeeeeeCCCCCCccceeeEeeCCeEEEEeeCCCC
Q 026013 173 ELELDMWRFRLPESTRPELASAVFEDGELIVTVPKGGG 210 (244)
Q Consensus 173 e~e~D~WRFRLPENA~~E~VsA~~eDGVLtVTVPK~~~ 210 (244)
.......+|+||+..+++.++|.|.||+|+||+||.++
T Consensus 98 ~~~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 98 AYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred EeeeEEEEEECcccccccceeeEeeCcEEEEEEecccc
Confidence 12333449999999999999999999999999999877
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.49 E-value=1.2e-13 Score=102.71 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=61.3
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-------cccccCCeeeeeCCCCCCccceee
Q 026013 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-------LDELELDMWRFRLPESTRPELASA 194 (244)
Q Consensus 124 DVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d-------ede~e~D~WRFRLPENA~~E~VsA 194 (244)
||.|+.++|...+|+|| ++++++++ +++ .|+++|.+..... +.......++|+||++++++.++|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~---~~~---~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a 74 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKV---DDN---KLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKA 74 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEE---ETT---EEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEE---ecC---ccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEE
Confidence 79999999999999999 89999995 664 4777776651100 112234456999999999999999
Q ss_pred EeeCCeEEEEeeCCCC
Q 026013 195 VFEDGELIVTVPKGGG 210 (244)
Q Consensus 195 ~~eDGVLtVTVPK~~~ 210 (244)
.|+||+|+|++||.+.
T Consensus 75 ~~~~GvL~I~~pk~~~ 90 (102)
T PF00011_consen 75 SYENGVLTITIPKKEE 90 (102)
T ss_dssp EETTSEEEEEEEBSSS
T ss_pred EecCCEEEEEEEcccc
Confidence 9999999999999877
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.47 E-value=7.1e-14 Score=105.51 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=63.8
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEe-eCCe
Q 026013 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVF-EDGE 200 (244)
Q Consensus 124 DVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~-eDGV 200 (244)
|+.|++++|.+.+|+|| +++++|+| +++ .|.++|+++.. +....+.+.++|.||++.++|.|+|.| +||+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v---~~~---~L~I~ger~~~-~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~Gv 74 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTT---SNN---QIEVHAEKLAS-DGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGT 74 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEecc-CCCEEEEEEEEEECCCCcCHHHeEEEecCCCE
Confidence 68899999999999999 89999985 664 68888876532 122334556799999999999999997 9999
Q ss_pred EEEEeeC
Q 026013 201 LIVTVPK 207 (244)
Q Consensus 201 LtVTVPK 207 (244)
|+||+++
T Consensus 75 L~I~~~~ 81 (81)
T cd06479 75 LTIKARR 81 (81)
T ss_pred EEEEecC
Confidence 9999985
No 9
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.46 E-value=1.8e-13 Score=111.91 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=66.0
Q ss_pred cCCCCCcccee-ecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-------cccccCCeeeeeCCC
Q 026013 116 PFRSDADVAVE-ESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-------LDELELDMWRFRLPE 185 (244)
Q Consensus 116 Pf~AdTdVDVk-EtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d-------ede~e~D~WRFRLPE 185 (244)
++.+-.++|+. |+.++|+..||+|| +++|.|++ ++| +|.++|++...++ |........+|+||+
T Consensus 30 ~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v---~~~---~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~ 103 (137)
T PRK10743 30 SNGGYPPYNVELVDENHYRIAIAVAGFAESELEITA---QDN---LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAE 103 (137)
T ss_pred ccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEECccccCCcEEEEEEECCEEEEEEECCC
Confidence 33333569999 58999999999999 89999995 664 6888887643211 111233445999999
Q ss_pred CCCccceeeEeeCCeEEEEeeCCCC
Q 026013 186 STRPELASAVFEDGELIVTVPKGGG 210 (244)
Q Consensus 186 NA~~E~VsA~~eDGVLtVTVPK~~~ 210 (244)
+++.| +|.|+||+|+||+||..+
T Consensus 104 ~Vd~~--~A~~~dGVL~I~lPK~~~ 126 (137)
T PRK10743 104 NIHVR--GANLVNGLLYIDLERVIP 126 (137)
T ss_pred CcccC--cCEEeCCEEEEEEeCCCc
Confidence 99999 599999999999999643
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.42 E-value=3.9e-13 Score=101.23 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=59.7
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccC-----CeeeeeCCCCCCccceeeEee
Q 026013 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELEL-----DMWRFRLPESTRPELASAVFE 197 (244)
Q Consensus 125 VkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~-----D~WRFRLPENA~~E~VsA~~e 197 (244)
..++.++|...+|+|| +++++|++ ++ +.|.++|++... + +.+. +..+|+||+++++|.|+|.|.
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v---~~---~~L~I~g~~~~~--~-~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~ 72 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKV---LG---DFIEIHGKHEER--Q-DEHGFISREFQRKYRIPADVDPLTITSSLS 72 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEE---EC---CEEEEEEEEcce--e-CCCCEEEEEEEEEEECCCCCChHHcEEEeC
Confidence 4678999999999999 89999995 65 467777764321 1 1111 455999999999999999995
Q ss_pred -CCeEEEEeeCC
Q 026013 198 -DGELIVTVPKG 208 (244)
Q Consensus 198 -DGVLtVTVPK~ 208 (244)
||+|+||+||.
T Consensus 73 ~dGvL~I~lPk~ 84 (84)
T cd06498 73 PDGVLTVCGPRK 84 (84)
T ss_pred CCCEEEEEEeCC
Confidence 99999999994
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.42 E-value=3.8e-13 Score=101.49 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=61.2
Q ss_pred cceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc--ccCCeeeeeCCCCCCccceeeEee-
Q 026013 123 VAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE--LELDMWRFRLPESTRPELASAVFE- 197 (244)
Q Consensus 123 VDVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede--~e~D~WRFRLPENA~~E~VsA~~e- 197 (244)
-||.|+++.|...+|+|| ++++++++ +++ .|.+.|++...+++.. .....++|+||++.++|+|+|.|.
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v---~~~---~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~ 76 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKT---KDG---VVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSP 76 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEE---ECC---EEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECC
Confidence 379999999999999999 89999996 664 5777776543211100 112345999999999999999997
Q ss_pred CCeEEEEee
Q 026013 198 DGELIVTVP 206 (244)
Q Consensus 198 DGVLtVTVP 206 (244)
||+|+|++|
T Consensus 77 dGvL~I~lP 85 (86)
T cd06475 77 DGILTVEAP 85 (86)
T ss_pred CCeEEEEec
Confidence 999999998
No 12
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.40 E-value=6.4e-13 Score=109.88 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=63.0
Q ss_pred ccceeec-CCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-------cccccCCeeeeeCCCCCCccc
Q 026013 122 DVAVEES-PDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-------LDELELDMWRFRLPESTRPEL 191 (244)
Q Consensus 122 dVDVkEt-PeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d-------ede~e~D~WRFRLPENA~~E~ 191 (244)
++|+.|+ .++|++.||+|| +++|.++| ++ +.|.++|++...++ |........+|+||++++.+
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v---~~---~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQL---EG---TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEE---EC---CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 5999985 689999999999 89999985 66 46888887643211 11223345589999999998
Q ss_pred eeeEeeCCeEEEEeeCCCC
Q 026013 192 ASAVFEDGELIVTVPKGGG 210 (244)
Q Consensus 192 VsA~~eDGVLtVTVPK~~~ 210 (244)
+|.|+||||+||+||..+
T Consensus 107 -~A~~~nGVL~I~lPK~~~ 124 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNEP 124 (142)
T ss_pred -cCEEcCCEEEEEEeccCc
Confidence 799999999999999643
No 13
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.39 E-value=1e-12 Score=93.04 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=62.8
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc--------cccccCCeeeeeCCCCCCcccee
Q 026013 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS--------LDELELDMWRFRLPESTRPELAS 193 (244)
Q Consensus 124 DVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d--------ede~e~D~WRFRLPENA~~E~Vs 193 (244)
|+.|+.+.|.+.+|+|| +++++|++ ++ +.|.+.|.+..... +.......++|.||++++++.++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v---~~---~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEV---ED---GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEE---EC---CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 57899999999999999 78999986 55 35666665543211 12245567799999999999999
Q ss_pred eEeeCCeEEEEeeC
Q 026013 194 AVFEDGELIVTVPK 207 (244)
Q Consensus 194 A~~eDGVLtVTVPK 207 (244)
|.|.||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999998
No 14
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.38 E-value=1.5e-12 Score=97.84 Aligned_cols=78 Identities=10% Similarity=0.172 Sum_probs=60.4
Q ss_pred ccceeecC-CeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc--------cccccCCeeeeeCCCCCCcc
Q 026013 122 DVAVEESP-DYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS--------LDELELDMWRFRLPESTRPE 190 (244)
Q Consensus 122 dVDVkEtP-eA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d--------ede~e~D~WRFRLPENA~~E 190 (244)
++|+.|+. ++|++.+|+|| ++++++++ ++ +.|.++|++..... |........+|.||++++.+
T Consensus 2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~~---~~---~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~ 75 (90)
T cd06470 2 PYNIEKTGENNYRITLAVAGFSEDDLEIEV---EN---NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK 75 (90)
T ss_pred CeeeEEcCCCeEEEEEECCCCCHHHeEEEE---EC---CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC
Confidence 57899985 99999999999 89999985 65 36888887754311 01123334599999998764
Q ss_pred ceeeEeeCCeEEEEeeC
Q 026013 191 LASAVFEDGELIVTVPK 207 (244)
Q Consensus 191 ~VsA~~eDGVLtVTVPK 207 (244)
+|.|+||+|+||+|+
T Consensus 76 --~A~~~~GvL~I~l~~ 90 (90)
T cd06470 76 --GAELENGLLTIDLER 90 (90)
T ss_pred --eeEEeCCEEEEEEEC
Confidence 999999999999986
No 15
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.33 E-value=2.4e-12 Score=97.13 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=58.8
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccc--ccccCCeeeeeCCCCCCccceeeEee-CC
Q 026013 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSL--DELELDMWRFRLPESTRPELASAVFE-DG 199 (244)
Q Consensus 125 VkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~de--de~e~D~WRFRLPENA~~E~VsA~~e-DG 199 (244)
++-..++|...+|+|| +++++|.+ +++ .|.++|++....++ --...+.++|.||++++++.|+|.|. ||
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v---~~~---~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dG 75 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRT---VDN---LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDG 75 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEE---ECC---EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCC
Confidence 3445899999999999 89999996 664 58888875321110 00111355999999999999999996 99
Q ss_pred eEEEEeeC
Q 026013 200 ELIVTVPK 207 (244)
Q Consensus 200 VLtVTVPK 207 (244)
+|+||+||
T Consensus 76 vL~I~~Pr 83 (83)
T cd06476 76 ILCIQAPR 83 (83)
T ss_pred EEEEEecC
Confidence 99999997
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.33 E-value=2e-12 Score=95.19 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=57.4
Q ss_pred CeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc--cccccCCeeeeeCCCCCCccceeeEeeC-CeEEEE
Q 026013 130 DYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS--LDELELDMWRFRLPESTRPELASAVFED-GELIVT 204 (244)
Q Consensus 130 eA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d--ede~e~D~WRFRLPENA~~E~VsA~~eD-GVLtVT 204 (244)
++|...+|+|| +++|+|++ ++ +.|.++|++...++ .-......++|+||++++++.++|.|.| |+|+|+
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v---~~---~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKV---SD---NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEE---EC---CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEE
Confidence 69999999999 89999996 65 46888887654211 1112334559999999999999999998 999999
Q ss_pred eeC
Q 026013 205 VPK 207 (244)
Q Consensus 205 VPK 207 (244)
+||
T Consensus 81 ~Pk 83 (83)
T cd06526 81 APK 83 (83)
T ss_pred ecC
Confidence 998
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.30 E-value=4.6e-12 Score=96.25 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=60.0
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc--ccCCeeeeeCCCCCCccceeeEe-eCC
Q 026013 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE--LELDMWRFRLPESTRPELASAVF-EDG 199 (244)
Q Consensus 125 VkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede--~e~D~WRFRLPENA~~E~VsA~~-eDG 199 (244)
-.|+.+.|+..+|+|| +++++|++ +++ .|.++|++....++.. ...+.++|+||++.+++.|+|.| +||
T Consensus 2 ~~e~~~~~~v~~dlpG~~~edI~V~v---~~~---~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dG 75 (83)
T cd06477 2 QEEGKPMFQILLDVVQFRPEDIIIQV---FEG---WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDG 75 (83)
T ss_pred cccCCceEEEEEEcCCCCHHHeEEEE---ECC---EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCC
Confidence 4689999999999999 89999995 764 6888887644211111 11335599999999999999997 899
Q ss_pred eEEEEee
Q 026013 200 ELIVTVP 206 (244)
Q Consensus 200 VLtVTVP 206 (244)
+|+|+.|
T Consensus 76 vL~I~~~ 82 (83)
T cd06477 76 ILVVETK 82 (83)
T ss_pred EEEEEec
Confidence 9999976
No 18
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.25 E-value=1.2e-11 Score=93.47 Aligned_cols=76 Identities=14% Similarity=0.287 Sum_probs=59.8
Q ss_pred eecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccc------cccCCeeeeeCCCCCCccceeeEe-
Q 026013 126 EESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLD------ELELDMWRFRLPESTRPELASAVF- 196 (244)
Q Consensus 126 kEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~ded------e~e~D~WRFRLPENA~~E~VsA~~- 196 (244)
+|..++|...+|+|| +++|+|++ ++ +.|+++|.+...+.++ .......+|+||++.+++.|+|.|
T Consensus 3 ~~~~d~~~v~~dlpG~~~edI~V~v---~~---~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~ 76 (87)
T cd06481 3 KDGKEGFSLKLDVRGFSPEDLSVRV---DG---RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLS 76 (87)
T ss_pred CCccceEEEEEECCCCChHHeEEEE---EC---CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeC
Confidence 567899999999999 89999995 66 4688888764321110 113345599999999999999999
Q ss_pred eCCeEEEEeeC
Q 026013 197 EDGELIVTVPK 207 (244)
Q Consensus 197 eDGVLtVTVPK 207 (244)
+||+|+|++|.
T Consensus 77 ~dGvL~I~~P~ 87 (87)
T cd06481 77 PSGHLHIRAPR 87 (87)
T ss_pred CCceEEEEcCC
Confidence 99999999994
No 19
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.94 E-value=2.1e-09 Score=82.47 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=56.3
Q ss_pred CCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-----cccccCCeeeeeCCCCCCccceeeEeeCC-e
Q 026013 129 PDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-----LDELELDMWRFRLPESTRPELASAVFEDG-E 200 (244)
Q Consensus 129 PeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~d-----ede~e~D~WRFRLPENA~~E~VsA~~eDG-V 200 (244)
-++|+..||+|| +++|+|++ ++| .|.++|++....+ +.......++|+||++.+.|+|+|.|.|| +
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v---~~~---~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKV---KDG---KVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 478999999999 89999995 764 5888888754211 11223345599999999999999999999 9
Q ss_pred EEEEee
Q 026013 201 LIVTVP 206 (244)
Q Consensus 201 LtVTVP 206 (244)
|++.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 998765
No 20
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.84 E-value=1.7e-08 Score=67.75 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=59.5
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccc-ccccccCCeeeeeCCCCCCccceeeEeeCCeE
Q 026013 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELS-SLDELELDMWRFRLPESTRPELASAVFEDGEL 201 (244)
Q Consensus 125 VkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~-dede~e~D~WRFRLPENA~~E~VsA~~eDGVL 201 (244)
|.|+.+.|.+.+++|| +++++|++ .++ . |.+.+.....+ .+.......|+|.||....++.++|.|.+|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~---~~~--~-l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l 74 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEV---EDN--V-LTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVL 74 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEE---ECC--E-EEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEE
Confidence 7899999999999999 68999985 553 3 44444332110 12234556889999999999999999999999
Q ss_pred EEEeeC
Q 026013 202 IVTVPK 207 (244)
Q Consensus 202 tVTVPK 207 (244)
+|++||
T Consensus 75 ~i~l~K 80 (80)
T cd00298 75 EITLPK 80 (80)
T ss_pred EEEEcC
Confidence 999998
No 21
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.60 E-value=1.1e-07 Score=73.88 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=55.9
Q ss_pred cCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccc--cccCCeeeeeCCCCCCccceeeEee-CCeEE
Q 026013 128 SPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLD--ELELDMWRFRLPESTRPELASAVFE-DGELI 202 (244)
Q Consensus 128 tPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~ded--e~e~D~WRFRLPENA~~E~VsA~~e-DGVLt 202 (244)
+.+.|....|+-| .+|++|.+ .+ +.|+++|.....+++. -...+..+|+||++.+++.|+|.+. ||+|+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv---~~---~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~ 86 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKT---KD---GFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLI 86 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEE---EC---CEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEE
Confidence 5678999999999 79999996 55 3577777654321110 0122344999999999999999999 99999
Q ss_pred EEeeC
Q 026013 203 VTVPK 207 (244)
Q Consensus 203 VTVPK 207 (244)
|+.|.
T Consensus 87 IeaP~ 91 (91)
T cd06480 87 IEAPQ 91 (91)
T ss_pred EEcCC
Confidence 99983
No 22
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.06 E-value=3.3e-05 Score=54.98 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=55.3
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeCCeEE
Q 026013 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELI 202 (244)
Q Consensus 125 VkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eDGVLt 202 (244)
|.++++.....+++|| ++++++++ ++. .+.+.+ +...-.++||...++|.++|.+.+|.|.
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~---~~~---~l~i~~-----------~~~~~~~~l~~~I~~e~~~~~~~~~~l~ 63 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFC---SDL---YLKVNF-----------PPYLFELDLAAPIDDEKSSAKIGNGVLV 63 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEE---ecC---EEEEcC-----------CCEEEEEeCcccccccccEEEEeCCEEE
Confidence 7889999999999999 67888774 553 344444 1123467999999999999999999999
Q ss_pred EEeeCCCC
Q 026013 203 VTVPKGGG 210 (244)
Q Consensus 203 VTVPK~~~ 210 (244)
|++||.++
T Consensus 64 i~L~K~~~ 71 (78)
T cd06469 64 FTLVKKEP 71 (78)
T ss_pred EEEEeCCC
Confidence 99999655
No 23
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2e-05 Score=67.39 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=62.9
Q ss_pred CCCccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc----ccCCeeeeeCCCCCCccce
Q 026013 119 SDADVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE----LELDMWRFRLPESTRPELA 192 (244)
Q Consensus 119 AdTdVDVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede----~e~D~WRFRLPENA~~E~V 192 (244)
+.....+..+.+-|....|+-. .+|++|.+ .+ +.|++.|..-+. +++ ...+..||.||++.+++.|
T Consensus 61 ~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~---~~---~~l~V~gkHeer--~d~~G~v~R~F~R~y~LP~~vdp~~V 132 (173)
T KOG3591|consen 61 SSGASEIVNDKDKFEVNLDVHQFKPEELKVKT---DD---NTLEVEGKHEEK--EDEHGYVSRSFVRKYLLPEDVDPTSV 132 (173)
T ss_pred cccccccccCCCcEEEEEEcccCcccceEEEe---CC---CEEEEEeeeccc--cCCCCeEEEEEEEEecCCCCCChhhe
Confidence 3445677788899999999988 79999996 44 456666643221 121 2223569999999999999
Q ss_pred eeE-eeCCeEEEEeeCCCCC
Q 026013 193 SAV-FEDGELIVTVPKGGGL 211 (244)
Q Consensus 193 sA~-~eDGVLtVTVPK~~~~ 211 (244)
++. ..||+|||++||.+..
T Consensus 133 ~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 133 TSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEeeCCCceEEEEccCCCCc
Confidence 885 5799999999997763
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.50 E-value=0.0012 Score=45.81 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=56.7
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeCCeEE
Q 026013 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELI 202 (244)
Q Consensus 125 VkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eDGVLt 202 (244)
|.++.+.....+++|| ++++.|.+ .+. .+-+..-.. +.....+.+.|+...+++.+++.+.+|.|.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~---~~~--~l~i~~~~~-------~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~ 68 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEF---TPK--SLTVSVKGG-------GGKEYLLEGELFGPIDPEESKWTVEDRKIE 68 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEE---ecC--EEEEEeeCC-------CCCceEEeeEccCccchhhcEEEEeCCEEE
Confidence 7789999999999999 58888874 553 333322111 013347789999999999999999999999
Q ss_pred EEeeCCCC
Q 026013 203 VTVPKGGG 210 (244)
Q Consensus 203 VTVPK~~~ 210 (244)
|+++|..+
T Consensus 69 i~L~K~~~ 76 (84)
T cd06463 69 ITLKKKEP 76 (84)
T ss_pred EEEEECCC
Confidence 99999765
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.30 E-value=0.0016 Score=56.88 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=54.0
Q ss_pred ccceeecCC-eeeEEEecCC--CCc-eEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEee
Q 026013 122 DVAVEESPD-YFKFVAETDG--MGE-VRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFE 197 (244)
Q Consensus 122 dVDVkEtPe-A~vFvADlPG--keE-VKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~e 197 (244)
.|++.|+-+ -.+-+||||| +++ ++|++ +.....+++..+++. .-|--||.. .++..+|.|.
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l---~~d~~~L~i~~~~~~-----------~krv~L~~~-~~e~~~~t~n 157 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTL---DDDEGALTIRVGEKY-----------LKRVALPWP-DPEITSATFN 157 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEe---ecCCceEEEecCCce-----------EeeEecCCC-ccceeeEEEe
Confidence 478888877 5999999999 567 88884 765433333323221 226778844 6899999999
Q ss_pred CCeEEEEeeCCCC
Q 026013 198 DGELIVTVPKGGG 210 (244)
Q Consensus 198 DGVLtVTVPK~~~ 210 (244)
||+|.|-+-|.++
T Consensus 158 NgILEIri~~~~~ 170 (177)
T PF05455_consen 158 NGILEIRIRRTEE 170 (177)
T ss_pred CceEEEEEeecCC
Confidence 9999999988766
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=96.45 E-value=0.021 Score=40.90 Aligned_cols=75 Identities=8% Similarity=-0.015 Sum_probs=57.3
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeCCeE
Q 026013 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGEL 201 (244)
Q Consensus 124 DVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eDGVL 201 (244)
||-+|.+.....+.+|| +++++|+. ++. ++.+..-.. . .+...+.+.|+....+|..++.+.+|.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~---~~~--~l~i~~~~~-~------~~~~~~~~~L~~~I~~~~s~~~~~~~~v 68 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEF---NEQ--SLSVSIILP-G------GSEYQLELDLFGPIDPEQSKVSVLPTKV 68 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---ecC--EEEEEEECC-C------CCeEEEecccccccCchhcEEEEeCeEE
Confidence 79999999888899999 68999984 652 433321110 0 1123567889999999999999999999
Q ss_pred EEEeeCCCC
Q 026013 202 IVTVPKGGG 210 (244)
Q Consensus 202 tVTVPK~~~ 210 (244)
.++..|..+
T Consensus 69 ei~L~K~~~ 77 (84)
T cd06466 69 EITLKKAEP 77 (84)
T ss_pred EEEEEcCCC
Confidence 999999665
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=94.40 E-value=0.65 Score=32.00 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=54.3
Q ss_pred ccceeecCCeeeEEEecCC----CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEee
Q 026013 122 DVAVEESPDYFKFVAETDG----MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFE 197 (244)
Q Consensus 122 dVDVkEtPeA~vFvADlPG----keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~e 197 (244)
+.+|.+|++.-.....+++ +++++|++ .+. .+.+..... ++ ....|...|....+++..+..+.
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~---~~~--~l~v~~~~~------~~-~~~~~~~~L~~~I~~~~s~~~~~ 69 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDF---TDT--SLSVSIKSG------DG-KEYLLEGELFGEIDPDESTWKVK 69 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEE---ETT--EEEEEEEET------TS-CEEEEEEEBSS-BECCCEEEEEE
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEE---Eee--EEEEEEEcc------CC-ceEEEEEEEeeeEcchhcEEEEE
Confidence 4689999999888889944 58999985 663 444432100 01 33467888999999999999999
Q ss_pred CCeEEEEeeC
Q 026013 198 DGELIVTVPK 207 (244)
Q Consensus 198 DGVLtVTVPK 207 (244)
++.|.||+.|
T Consensus 70 ~~~i~i~L~K 79 (79)
T PF04969_consen 70 DNKIEITLKK 79 (79)
T ss_dssp TTEEEEEEEB
T ss_pred CCEEEEEEEC
Confidence 9999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=92.48 E-value=0.7 Score=40.82 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=49.7
Q ss_pred ecCCeeeEEEecCC---CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeC--CeE
Q 026013 127 ESPDYFKFVAETDG---MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFED--GEL 201 (244)
Q Consensus 127 EtPeA~vFvADlPG---keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eD--GVL 201 (244)
..|+..+..+++|| ..++..+| ++ +++.+.+... .......||-..+.+.++|.+.- ++|
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV---~~--~~l~l~~~~~----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L 322 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDV---SE--DRLSLSSPKP----------KYRLDLPLPYPVDEDNGKAKFDKKTKTL 322 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEE---eC--CEEEEEeCCC----------ceEEEccCCCcccCCCceEEEccCCCEE
Confidence 44899999999999 56777764 55 3555544321 33567899999999999998876 999
Q ss_pred EEEee
Q 026013 202 IVTVP 206 (244)
Q Consensus 202 tVTVP 206 (244)
+||+|
T Consensus 323 ~vtlp 327 (328)
T PF08190_consen 323 TVTLP 327 (328)
T ss_pred EEEEE
Confidence 99998
No 29
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=82.47 E-value=14 Score=26.49 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=52.1
Q ss_pred ceeecCCeeeEEEecCC---CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeC-C
Q 026013 124 AVEESPDYFKFVAETDG---MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFED-G 199 (244)
Q Consensus 124 DVkEtPeA~vFvADlPG---keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eD-G 199 (244)
+|.++.+.-.....+|. +++|++.+ .+ +.+-+...+. + ...--+|....++|..+-.+.+ .
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~---~~--~~l~v~~~~~-----~-----~~l~~~L~~~I~~~~s~w~~~~~~ 66 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEI---TP--KHLKVGVKGG-----E-----PLLDGELYAKVKVDESTWTLEDGK 66 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEE---Ec--CEEEEEECCC-----C-----ceEcCcccCceeEcCCEEEEeCCC
Confidence 68899887777778875 68999985 55 3554433210 1 1122368899999999999999 9
Q ss_pred eEEEEeeCCCC
Q 026013 200 ELIVTVPKGGG 210 (244)
Q Consensus 200 VLtVTVPK~~~ 210 (244)
.|.|+.+|.++
T Consensus 67 ~v~i~L~K~~~ 77 (85)
T cd06467 67 LLEITLEKRNE 77 (85)
T ss_pred EEEEEEEECCC
Confidence 99999999765
No 30
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=80.56 E-value=14 Score=28.29 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=56.6
Q ss_pred ccceeecCCeeeEEEecCCCCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeCCeE
Q 026013 122 DVAVEESPDYFKFVAETDGMGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGEL 201 (244)
Q Consensus 122 dVDVkEtPeA~vFvADlPGkeEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eDGVL 201 (244)
.++|-.|++.-...+.+||.++++|.+ .+ +++.+..-+... .+.-..-..|.....+|..+..+.++.+
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~~~~~V~~---~~--~~l~v~~~~~~~------~~~y~~~~~L~~~I~pe~s~~~v~~~kv 70 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDAKDPKIKL---EP--TSLSFKAKGGGG------GKKYEFDLEFYKEIDPEESKYKVTGRQI 70 (108)
T ss_pred ceeeeECCCEEEEEEEeCCCCCcEEEE---EC--CEEEEEEEcCCC------CeeEEEEeEhhhhccccccEEEecCCeE
Confidence 579999999888889999977888874 55 354443211110 0111234489999999999999999999
Q ss_pred EEEeeCCC
Q 026013 202 IVTVPKGG 209 (244)
Q Consensus 202 tVTVPK~~ 209 (244)
.|+..|..
T Consensus 71 eI~L~K~~ 78 (108)
T cd06465 71 EFVLRKKE 78 (108)
T ss_pred EEEEEECC
Confidence 99999976
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=55.04 E-value=79 Score=22.94 Aligned_cols=75 Identities=8% Similarity=-0.008 Sum_probs=50.4
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeCCeE
Q 026013 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGEL 201 (244)
Q Consensus 124 DVkEtPeA~vFvADlPG--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eDGVL 201 (244)
||-.+.+.-.....++| +++++|+. ++. .+-+..-. .. . +.-..-+.|-...+||..+....++-+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~---~~~--~l~~~~~~-~~---~---~~y~~~~~L~~~I~p~~s~~~v~~~ki 68 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEF---EKR--ELSATVKL-PS---G---NDYSLKLHLLHPIVPEQSSYKILSTKI 68 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---eCC--EEEEEEEC-CC---C---CcEEEeeecCceecchhcEEEEeCcEE
Confidence 67788776555566777 58888874 663 33332211 11 0 112335588899999999999999999
Q ss_pred EEEeeCCCC
Q 026013 202 IVTVPKGGG 210 (244)
Q Consensus 202 tVTVPK~~~ 210 (244)
.|+..|.++
T Consensus 69 ei~L~K~~~ 77 (84)
T cd06489 69 EIKLKKTEA 77 (84)
T ss_pred EEEEEcCCC
Confidence 999999654
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=39.15 E-value=1.5e+02 Score=21.61 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=52.6
Q ss_pred CccceeecCCeeeEEEecCC--C---CceEEEEEEecCCceeEEEecCCcccccccccccCCeeee---eCCCCCCccce
Q 026013 121 ADVAVEESPDYFKFVAETDG--M---GEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRF---RLPESTRPELA 192 (244)
Q Consensus 121 TdVDVkEtPeA~vFvADlPG--k---eEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRF---RLPENA~~E~V 192 (244)
+.-+|-.|.+.-.-.+++|+ . ++++|. +.+. .+-+.... .+.+.+.| +|-...++|..
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~---~~~~--~l~v~~~~---------~~~~~~~~~~~~L~~~I~~e~s 67 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVE---FTER--SFELKVHD---------LNGKNYRFTINRLLKKIDPEKS 67 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEE---ecCC--EEEEEEEC---------CCCcEEEEEehHhhCccCcccc
Confidence 35688899888777778887 3 667776 3553 44443311 01122333 57889999999
Q ss_pred eeEeeCCeEEEEeeCCCC
Q 026013 193 SAVFEDGELIVTVPKGGG 210 (244)
Q Consensus 193 sA~~eDGVLtVTVPK~~~ 210 (244)
+-.+.++.+.++..|..+
T Consensus 68 ~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 68 SFKVKTDRIVITLAKKKE 85 (92)
T ss_pred EEEEeCCEEEEEEEeCCC
Confidence 999999999999999765
No 33
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=38.21 E-value=56 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=24.3
Q ss_pred eeeeeC--------CCCCCccceeeEeeCCeEEEEeeCCC
Q 026013 178 MWRFRL--------PESTRPELASAVFEDGELIVTVPKGG 209 (244)
Q Consensus 178 ~WRFRL--------PENA~~E~VsA~~eDGVLtVTVPK~~ 209 (244)
.|+|.| |....+.......+||.+.|.+|+..
T Consensus 66 g~~Fd~~tG~~~~~p~~~~l~~y~v~v~~g~v~v~~~~~~ 105 (106)
T PRK09965 66 AASFCLRTGKALCLPATDPLRTYPVHVEGGDIFIDLPEAQ 105 (106)
T ss_pred CCEEEcCCCCeeCCCCCCCcceEeEEEECCEEEEEccCCC
Confidence 568877 33455677788889999999999754
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=32.81 E-value=2e+02 Score=21.13 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=50.1
Q ss_pred ceeecCCeeeEEEecC-C--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeCC-
Q 026013 124 AVEESPDYFKFVAETD-G--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDG- 199 (244)
Q Consensus 124 DVkEtPeA~vFvADlP-G--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eDG- 199 (244)
+|-.|++.-.....+| | +.+++|++ ++. ++.+...+. ..-.+ -.|....++|..+=..++|
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~---~~~--~l~v~~~~~-----~~~~~-----g~L~~~I~~d~Stw~i~~~~ 66 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKF---LPD--HISIALKDQ-----APLLE-----GKLYSSIDHESSTWIIKENK 66 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEE---ecC--EEEEEeCCC-----CeEEe-----CcccCcccccCcEEEEeCCC
Confidence 5888887777777785 6 68999985 663 555533211 00111 1688888899988888877
Q ss_pred eEEEEeeCCCC
Q 026013 200 ELIVTVPKGGG 210 (244)
Q Consensus 200 VLtVTVPK~~~ 210 (244)
.|.|+..|.++
T Consensus 67 ~l~i~L~K~~~ 77 (85)
T cd06493 67 SLEVSLIKKDE 77 (85)
T ss_pred EEEEEEEECCC
Confidence 59999999765
No 35
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=32.13 E-value=75 Score=24.01 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=27.3
Q ss_pred eeeeeC-------CCCCCccceeeEeeCCeEEEEeeCCCC
Q 026013 178 MWRFRL-------PESTRPELASAVFEDGELIVTVPKGGG 210 (244)
Q Consensus 178 ~WRFRL-------PENA~~E~VsA~~eDGVLtVTVPK~~~ 210 (244)
-|+|.| |+...+.......+||.+.|.++..++
T Consensus 65 g~~Fdl~~G~~~~~~~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 65 LWQFDADTGEGLNPRDCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred CCEEECCCccccCCCCCccceEeEEEECCEEEEeCCCcCc
Confidence 468887 777788888889999999999987554
No 36
>PF14913 DPCD: DPCD protein family
Probab=31.43 E-value=1.8e+02 Score=26.42 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=49.2
Q ss_pred eecCCeeeEEEe-cCC-CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeCCeEEE
Q 026013 126 EESPDYFKFVAE-TDG-MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELIV 203 (244)
Q Consensus 126 kEtPeA~vFvAD-lPG-keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eDGVLtV 203 (244)
+-|..+|.|.+- +|- ++-..|.| +++.-.|||+.....=- .+=.--|+=|+.||. ..+.++-..+|..|+|
T Consensus 92 ~dTk~~fqWRIRNLPYP~dvYsVtv---d~~~r~ivvRTtNKKYy--Kk~~IPDl~R~~l~l--~~~~ls~~h~nNTLII 164 (194)
T PF14913_consen 92 RDTKTSFQWRIRNLPYPKDVYSVTV---DEDERCIVVRTTNKKYY--KKFSIPDLDRCGLPL--EQSALSFAHQNNTLII 164 (194)
T ss_pred EcCccceEEEEccCCCCccceEEEE---cCCCcEEEEECcCccce--eEecCCcHHhhCCCc--chhhceeeeecCeEEE
Confidence 467889999874 688 66666664 66533477776543211 111223344666664 4577899999999999
Q ss_pred EeeC
Q 026013 204 TVPK 207 (244)
Q Consensus 204 TVPK 207 (244)
|-.|
T Consensus 165 sYkK 168 (194)
T PF14913_consen 165 SYKK 168 (194)
T ss_pred EecC
Confidence 9988
No 37
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=27.63 E-value=1.2e+02 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=14.1
Q ss_pred eeeCCCCCCccceeeEeeCCeEEEEe
Q 026013 180 RFRLPESTRPELASAVFEDGELIVTV 205 (244)
Q Consensus 180 RFRLPENA~~E~VsA~~eDGVLtVTV 205 (244)
+|.||++++...+...+...-|+|.+
T Consensus 20 ~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 20 EVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEECCCCCceeeEEEEEEcCEEEEEE
Confidence 45555555555555555555555554
No 38
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=27.34 E-value=49 Score=24.35 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=10.2
Q ss_pred cceeeEeeCCeEE
Q 026013 190 ELASAVFEDGELI 202 (244)
Q Consensus 190 E~VsA~~eDGVLt 202 (244)
..|.|.|+||||.
T Consensus 3 ~~I~aiYe~Gvlk 15 (60)
T PF01954_consen 3 KVIEAIYENGVLK 15 (60)
T ss_dssp --EEEEEETTEEE
T ss_pred ceEEEEEECCEEE
Confidence 4589999999985
No 39
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=25.50 E-value=3.2e+02 Score=21.18 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=53.3
Q ss_pred ccceeecCCeeeEEEecC-C--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeeCCCCCCccceeeEeeC
Q 026013 122 DVAVEESPDYFKFVAETD-G--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFED 198 (244)
Q Consensus 122 dVDVkEtPeA~vFvADlP-G--keEVKVeVvEIEpGvtKVVVisger~~~~dede~e~D~WRFRLPENA~~E~VsA~~eD 198 (244)
.-+|..|.+.-...+.+| | +.+++|.+ .+. ++-|...++. -.+. .|....++|..+=.++|
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i---~~~--~l~V~~~g~~------~l~G-----~L~~~I~~destWtled 70 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKL---GSR--DISLAVKGQE------VLKG-----KLFDSVVADECTWTLED 70 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEE---EcC--EEEEEECCEE------EEcC-----cccCccCcccCEEEEEC
Confidence 367899988888888787 4 78999984 774 5555432211 1111 58899999999999999
Q ss_pred Ce-EEEEeeCCCC
Q 026013 199 GE-LIVTVPKGGG 210 (244)
Q Consensus 199 GV-LtVTVPK~~~ 210 (244)
|. |.|++.|...
T Consensus 71 ~k~l~I~L~K~~~ 83 (93)
T cd06494 71 RKLIRIVLTKSNR 83 (93)
T ss_pred CcEEEEEEEeCCC
Confidence 97 7999999765
No 40
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.71 E-value=1e+02 Score=19.53 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=14.0
Q ss_pred CeeeeeCCCCCCccceeeEeeCCeEEEE
Q 026013 177 DMWRFRLPESTRPELASAVFEDGELIVT 204 (244)
Q Consensus 177 D~WRFRLPENA~~E~VsA~~eDGVLtVT 204 (244)
-.|+++++.... .+.++.||.|.|.
T Consensus 3 ~~W~~~~~~~~~---~~~~v~~g~vyv~ 27 (40)
T PF13570_consen 3 VLWSYDTGGPIW---SSPAVAGGRVYVG 27 (40)
T ss_dssp EEEEEE-SS------S--EECTSEEEEE
T ss_pred eeEEEECCCCcC---cCCEEECCEEEEE
Confidence 379999986332 3446778877664
No 41
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=23.01 E-value=1.2e+02 Score=25.71 Aligned_cols=64 Identities=27% Similarity=0.313 Sum_probs=40.7
Q ss_pred eeeCCCCCCccc----eeeEeeCCeEEEEeeCCCCCCCCcccCCCCCCCCCCCcceeecCCCceEEEeC
Q 026013 180 RFRLPESTRPEL----ASAVFEDGELIVTVPKGGGLEGLEERDGGGGGDGSENGEFRGGMGNNRLVLVQ 244 (244)
Q Consensus 180 RFRLPENA~~E~----VsA~~eDGVLtVTVPK~~~~e~~~e~~g~~~~d~~~~~~~~~g~g~~~lv~vq 244 (244)
.|.||++.-+++ +.--.+-+--+|++-++.+.|-..+-+.++|+.|.+-|+.-. --++|++.||
T Consensus 46 Sy~lp~~lss~~~~~~v~np~ea~mk~v~k~~Gqele~~~~t~~iggg~g~~lGt~yR-~adgr~I~Vp 113 (121)
T COG4744 46 SYHLPELLSSNEDITIVKNPGEADMKIVIKDYGQELEVLNMTARIGGGTGEALGTAYR-LADGRVIYVP 113 (121)
T ss_pred hcCCccccCCCCCceEEecCcccceeeeehhcCcchhhhhccccccCcccceeeeEEe-cCCCeEEEec
Confidence 678887766655 444455677888888888878777766665554343232222 2267888776
No 42
>PF13854 Kelch_5: Kelch motif
Probab=22.40 E-value=1.2e+02 Score=19.63 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=17.7
Q ss_pred eEEEecCCcccccccccccCCeeeeeCCCC
Q 026013 157 KIVIRPNGCVELSSLDELELDMWRFRLPES 186 (244)
Q Consensus 157 KVVVisger~~~~dede~e~D~WRFRLPEN 186 (244)
++.+.+|.... ....-+|.|++.|+.+
T Consensus 16 ~iyi~GG~~~~---~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 16 NIYIFGGYSGN---NNSYSNDLYVLDLPSF 42 (42)
T ss_pred EEEEEcCccCC---CCCEECcEEEEECCCC
Confidence 66666665431 3345688999999853
No 43
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=21.79 E-value=2.8e+02 Score=24.64 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=44.8
Q ss_pred cCcchhh-hhhcccCCCCCccceeecCCe---------------eeEEEecCC--CCceEEEEEEecC--CceeEEEecC
Q 026013 104 RLPHIFT-RVLELPFRSDADVAVEESPDY---------------FKFVAETDG--MGEVRAHMVEIHP--GVTKIVIRPN 163 (244)
Q Consensus 104 RLPHvFs-rVLELPf~AdTdVDVkEtPeA---------------~vFvADlPG--keEVKVeVvEIEp--GvtKVVVisg 163 (244)
+|+|+-. --++|+|-.|-+|.++-.... |.+...+-+ ...++|+|.+=-| +..+|-|..-
T Consensus 200 ~l~~~~~ge~~~l~~G~d~~v~v~r~~~~~~~~~g~~~~~~~~~~~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~ 279 (317)
T PF13598_consen 200 RLPHTAPGEEFELSFGVDPDVRVERKLLKKEEERGFFGKSQRRTYEYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELL 279 (317)
T ss_pred ecCCCCCCCEEEEEcccCCCEEEEEEecceecccccccccEEEEEEEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEc
Confidence 4555432 245688888888776544322 333334433 5677777644322 2223333222
Q ss_pred CcccccccccccCCeeeeeCCCCCCcc
Q 026013 164 GCVELSSLDELELDMWRFRLPESTRPE 190 (244)
Q Consensus 164 er~~~~dede~e~D~WRFRLPENA~~E 190 (244)
+-.....++..+.-.|++.||++...+
T Consensus 280 ~~~~~~~~~~~g~~~W~~~l~~g~~~~ 306 (317)
T PF13598_consen 280 EPPEPNEDEKDGILEWKVTLPPGESRT 306 (317)
T ss_pred CCCCCcccCCCCEEEEEEEECCCCEEE
Confidence 211110123345559999999987544
No 44
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=21.39 E-value=1.1e+02 Score=21.26 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=14.1
Q ss_pred CCCCccceeeEeeCCeEEE
Q 026013 185 ESTRPELASAVFEDGELIV 203 (244)
Q Consensus 185 ENA~~E~VsA~~eDGVLtV 203 (244)
++..++-|..+++||+++|
T Consensus 13 p~~~~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 13 PNQPAEGIDYVFVNGQIVV 31 (48)
T ss_dssp TT---BSEEEEEETTEEEE
T ss_pred ccccCCCEEEEEECCEEEE
Confidence 3455688999999999998
No 45
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.80 E-value=37 Score=33.31 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=17.7
Q ss_pred chhhh-hhcccCCCCCccceeec
Q 026013 107 HIFTR-VLELPFRSDADVAVEES 128 (244)
Q Consensus 107 HvFsr-VLELPf~AdTdVDVkEt 128 (244)
.+|.+ .-|||-.++++|||+||
T Consensus 91 ~vfr~~s~~lp~~~d~~vdWeet 113 (390)
T KOG2465|consen 91 RVFRPKSDELPGESDAEVDWEET 113 (390)
T ss_pred HhhcchhhcCCCCCCcccChhhh
Confidence 34544 45899999999999998
Done!