BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026014
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150)
Length = 152
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PKE + E + R V+R+I +Q EE+K+ +K AK G +
Sbjct: 3 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC 62
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
+LA++++R R+ ++ L S+A + V + A ++ ++ +T+ M AM +K
Sbjct: 63 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 122
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESI 167
P QA + +E K+ + + EM+ ++
Sbjct: 123 PEIQATM-RELSKEMMKAGIIEEMLEDTF 150
>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222).
pdb|3FRT|B Chain B, The Structure Of Human Chmp3 (Residues 8 - 222)
Length = 218
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 5/174 (2%)
Query: 31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLR 90
PKE + E + R V+R+I +Q EE+K+ +K AK G + +LA++++R R
Sbjct: 8 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR 67
Query: 91 QQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK-PAKQAKLIKEF 149
+ ++ L S+A + V + A ++ ++ +T+ M AM +K P QA + +E
Sbjct: 68 KAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM-REL 126
Query: 150 QKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
K+ + + EM+ ++ +++L EI A L AP
Sbjct: 127 SKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI---TAGALGKAP 177
>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3
pdb|2GD5|B Chain B, Structural Basis For Budding By The Escrtiii Factor Chmp3
pdb|2GD5|C Chain C, Structural Basis For Budding By The Escrtiii Factor Chmp3
pdb|2GD5|D Chain D, Structural Basis For Budding By The Escrtiii Factor Chmp3
Length = 179
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLR 90
PKE + E + R V+R+I +Q EE+K+ +K AK G + +LA++ +R R
Sbjct: 8 PKELVNEWSLKIRKEXRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEXIRSR 67
Query: 91 QQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK-PAKQAKLIKEF 149
+ ++ L S+A V + A ++ ++ +T+ A +K P QA +E
Sbjct: 68 KAVSKLYASKAHXNSVLXGXKNQLAVLRVAGSLQKSTEVXKAXQSLVKIPEIQA-TXREL 126
Query: 150 QKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 203
K+ + + EM+ ++ +++L EI A L AP
Sbjct: 127 SKEXXKAGIIEEMLEDTFESMDDQEEXEEEAEXEIDRILFEI---TAGALGKAP 177
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 49 VEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNL 96
+ ++A+ Q E+ KL AE+ K +GN+ +LA+Q+ + ++T+
Sbjct: 603 IAEQVASFQEEKSKLDAEVSKWDDSGNDII--VLAKQMCMIMMEMTDF 648
>pdb|2AU1|A Chain A, Crystal Structure Of Group A Streptococcus Mac-1
Orthorhombic Form
Length = 292
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 87 VRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLI 146
VR+ I NL G+ G + +A+Y + S S G K V +N K A AK I
Sbjct: 211 VRINHVI-NLWGADFDSNG---NLKAIYVTDSDSNASIGMKKYFVGVNSAGKVAISAKEI 266
Query: 147 KE 148
KE
Sbjct: 267 KE 268
>pdb|2AVW|A Chain A, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|B Chain B, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|C Chain C, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|D Chain D, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|E Chain E, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|F Chain F, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
Length = 311
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 87 VRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLI 146
VR+ I NL G+ G + +A+Y + S S G K V +N K A AK I
Sbjct: 230 VRINHVI-NLWGADFDSNG---NLKAIYVTDSDSNASIGMKKYFVGVNSAGKVAISAKEI 285
Query: 147 KE 148
KE
Sbjct: 286 KE 287
>pdb|1Y08|A Chain A, Structure Of The Streptococcal Endopeptidase Ides, A Novel
Cysteine Proteinase With Strict Specificity For Igg
Length = 323
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 87 VRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLI 146
VR+ I NL G+ G + +A+Y + S S G K V +N K A AK I
Sbjct: 242 VRINHVI-NLWGADFDSNG---NLKAIYVTDSDSNASIGMKKYFVGVNSAGKVAISAKEI 297
Query: 147 KE 148
KE
Sbjct: 298 KE 299
>pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
Length = 225
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSR 100
DM T +G+ + + +KL E + GN T + +L + QQI L GS
Sbjct: 115 DMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSG 174
Query: 101 AQIRGVATHTQALYASTSISTGMRGATKAMVAMN 134
A + + + ++ T + K + A N
Sbjct: 175 AS--NIEIADKLFVSENTVKTHLHNVFKKINAKN 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.121 0.302
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,534,905
Number of Sequences: 62578
Number of extensions: 128742
Number of successful extensions: 362
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 25
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)