BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026014
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 361 bits (926), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 182/223 (81%), Positives = 206/223 (92%), Gaps = 1/223 (0%)
Query: 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
MNIF+KKTTPK+ALR SKR+MA ATRG+EREI +LQLEEK+LVAEIKKTAKTGNEAAT+I
Sbjct: 1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60
Query: 82 LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
LARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GM+GATKAMVAMN+QM P K
Sbjct: 61 LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120
Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
QAK+IK+FQKQSAQ+DMTIEMMSE+IDETLDKDEAEEETE+LTNQVLDEIGV +ASQLSS
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180
Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
APKGRIA++ A A+ TN +SES++V++LEKR ASLRRI
Sbjct: 181 APKGRIATKTA-APPASTAATNKNSESSEVDELEKRLASLRRI 222
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 307 bits (786), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 149/221 (67%), Positives = 183/221 (82%), Gaps = 11/221 (4%)
Query: 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
MNIF KK P+E LRESKR+M ATRG+E+EI +LQ EEKKLV EIK+TAK+GNE AT+I
Sbjct: 1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60
Query: 82 LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
LARQL+RLRQQI NLQGSRAQ+RG+ATHTQA++A TS++ GM+GATKAM AM++ M PAK
Sbjct: 61 LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120
Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
QAK+++EFQKQSAQMDMT EMMS+SID+ LD DEAE+ETE+LTNQVLDEIG+DIASQLSS
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180
Query: 202 APKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
APKG+I + A + S+ +++LEKR A+LR
Sbjct: 181 APKGKIGGKKAEDV-----------GSSGIDELEKRLAALR 210
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 134/197 (68%), Gaps = 3/197 (1%)
Query: 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI 81
M +F K+ TPKE LRE++R++ + R ++RE ALQ +EKK++ +IKK AK G + +I
Sbjct: 1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKI 60
Query: 82 LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAK 141
+A+ LVR R I + Q++ V+ Q L ++ +++ M+G TKAM+ MN+QM +
Sbjct: 61 MAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQ 120
Query: 142 QAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSS 201
K++ EF++QS +MDM EMM++++D+ +++D EE+++E+ NQVLDEIG+D+ASQL
Sbjct: 121 FTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVD 180
Query: 202 AP---KGRIASRNAPNA 215
AP +AS++ N+
Sbjct: 181 APTTVGTSVASKHQVNS 197
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
+IF K+ TP E LRE+KR + + R +ERE LQ +EKKL+ EIKKTAK G A +++
Sbjct: 4 SIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVM 63
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+ L+R R QI ++Q++GV+ Q L ++ ++ M+G TKAM MN+QM
Sbjct: 64 AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 123
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
K+++EF++Q+ +M+M E+M ++ID+ L+ DE EEETE+L +QVLDEIG+DI +L +A
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA 183
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRRI 244
P G +A A N V A T DL+ R +LR++
Sbjct: 184 PSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 139/219 (63%), Gaps = 10/219 (4%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + ++E +++ R + R+ AL+ +EK+L EIKK AKTGN A ++L
Sbjct: 3 SLFKKKTVD-DVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV++R+Q T +++ ++T T+ + + ++ M TK M A+N++M P K
Sbjct: 62 AKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++A+MDMT EMM++++DE + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 MQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHA 181
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
P A+R P+A A A S ED+E++ +L
Sbjct: 182 PS---AARKTPSA-ATAKADGISD-----EDIERQLKAL 211
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 129/195 (66%), Gaps = 4/195 (2%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + +RE +++ R + R+ AAL+ +EK+L EIKK AKTGN+ A R+L
Sbjct: 3 SLFKKKTVD-DIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV+LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D E EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 203 PKGRIASRNAPNAVA 217
P A++ P+ A
Sbjct: 182 PS---AAKGLPSTSA 193
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + ++E R++ R + R+ AAL+ +EK+L EIKK AK GN+ A R+L
Sbjct: 3 SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
P A+R+ P+A +TS + E++E++ +L
Sbjct: 182 PS---AARSLPSA-------STSKSTISDEEIERQLKAL 210
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + ++E R++ R + R+ AAL+ +EK+L EIKK AK GN+ A R+L
Sbjct: 3 SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
P A+R+ P+A +TS + E++E++ +L
Sbjct: 182 PS---AARSLPSA-------STSKATISDEEIERQLKAL 210
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + ++E R++ R + R+ AAL+ +EK+L EIKK AK GN+ A ++L
Sbjct: 3 SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
P A+R+ P+A +TS + E++E++ +L
Sbjct: 182 PS---AARSLPSA-------STSKATISDEEIERQLKAL 210
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 140/219 (63%), Gaps = 11/219 (5%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + ++E R++ R + R+ AAL+ +EK+L EIKK AK GN+ A ++L
Sbjct: 3 SLFKKKTVD-DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
P A+R+ P+A +TS + E++E++ +L
Sbjct: 182 PS---AARSLPSA-------STSKATISDEEIERQLKAL 210
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 134 bits (336), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 138/220 (62%), Gaps = 12/220 (5%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + +RE +++ R + R+ AAL+ +EK+L EIKK AK GN+ A R+L
Sbjct: 3 SLFKKKTVD-DIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV+LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D + EEE++++ NQVLDEIG++I+
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEIS------ 175
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESA-DVEDLEKRFASL 241
G++A AP+A P T+ S S E++E++ +L
Sbjct: 176 --GKMA--KAPSAAKGLPSTSASKSSGISDEEIERQLKAL 211
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 142/219 (64%), Gaps = 10/219 (4%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + ++E R++ R + R+ AAL+ +E++L EIKK AKTGN+ A ++L
Sbjct: 3 SLFKKKTVD-DIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV+LR+Q +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D + EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
P A+R P+ A+ K +T S+ E++E++ +L
Sbjct: 182 PS---AARGLPS--ASTSKASTISD----EEIERQLKAL 211
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 140/222 (63%), Gaps = 6/222 (2%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F ++ TP+E LR+++R + A R ++RE L+ +EKK++A+IKK AK G A +I+
Sbjct: 3 SLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIM 62
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K +
Sbjct: 63 AKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQI 122
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
K++ EF++QS MDM EMM+++ID+ + ++ EEE++ + +QVLDE+G+ ++ +LS+
Sbjct: 123 QKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNL 182
Query: 203 PKGRIASRNAPNAVANAPKTNTSSESADVE-DLEKRFASLRR 243
P + +VA K AD + DLE+R +LRR
Sbjct: 183 P-----ATGGSLSVAAGKKAEPQPTLADADADLEERLNNLRR 219
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 129/196 (65%), Gaps = 4/196 (2%)
Query: 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRIL 82
++F+KKT + +++ +++ R + R+ AL+ +EK+L EIKK AK GN+ A ++L
Sbjct: 3 SLFKKKTVD-DIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVL 61
Query: 83 ARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQ 142
A+QLV+LR+Q T +++ ++T T+ + + ++ M K M A+N++M P K
Sbjct: 62 AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121
Query: 143 AKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
+ ++ FQK++ +M+MT EM+++++D+ D E EEE++++ NQVLDEIG++I+ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKA 181
Query: 203 PKGRIASRNAPNAVAN 218
P A++ P+A A+
Sbjct: 182 PS---AAKGLPSASAS 194
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 139/221 (62%), Gaps = 6/221 (2%)
Query: 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
+F ++ TP+E LR+++R + A R ++RE L+ +EKK++A+IKK AK G A +I+A
Sbjct: 4 LFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMA 63
Query: 84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K +
Sbjct: 64 KDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQ 123
Query: 144 KLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAP 203
K++ EF+KQS MDM EMM+++ID+ + ++ EEE++ + +QVLDE+G+ + +LS+ P
Sbjct: 124 KIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP 183
Query: 204 KGRIASRNAPNAVANAPKTNTS-SESADVEDLEKRFASLRR 243
S +VA A K S + + DLE+R +LRR
Sbjct: 184 -----STGGSLSVAGAKKGEPSAALADADADLEERLNNLRR 219
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 121/180 (67%)
Query: 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
+F ++ TP+E LR+++R + A R ++RE L+ +EKK++A+IKK AK G A +I+A
Sbjct: 4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMA 63
Query: 84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K +
Sbjct: 64 KDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQ 123
Query: 144 KLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAP 203
K++ EF+KQS MDM EMM+++ID+ + ++ EEE++ + +QVLDE+G+ + +LS+ P
Sbjct: 124 KIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP 183
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 121/180 (67%)
Query: 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
+F ++ TP+E LR+++R + A R ++RE L+ +EKK++A+IKK AK G A RI+A
Sbjct: 4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63
Query: 84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K +
Sbjct: 64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123
Query: 144 KLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAP 203
K++ EF++Q+ MDM EMM+++ID+ + +E EEE++ + +QVLDE+G+ + +LS+ P
Sbjct: 124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 121/180 (67%)
Query: 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
+F ++ TP+E LR+++R + A R ++RE L+ +EKK++A+IKK AK G A RI+A
Sbjct: 4 LFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMA 63
Query: 84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
+ LVR R+ + RA I+ V+ Q L ++ S++ M+G TKAM MN+Q+K +
Sbjct: 64 KDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQ 123
Query: 144 KLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAP 203
K++ EF++Q+ MDM EMM+++ID+ + +E EEE++ + +QVLDE+G+ + +LS+ P
Sbjct: 124 KIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 10/203 (4%)
Query: 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
+F K TP+E L++++R + R +ERE L+L++KKLV+EIKK+AK G AA ++ A
Sbjct: 7 VFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQA 66
Query: 84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
+ LVR R I +AQ++ ++ QA+ +S ++ M AT + MN+ M +
Sbjct: 67 KDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQ 126
Query: 144 KLIKEFQKQSAQMDMTIEMMSESIDETLD-KDEAEEETEELTNQVLDEIGVDIASQLSSA 202
++ EF+KQS M E M E+ID + + + +EE +E+ N+VLDEIGVD+ SQL S
Sbjct: 127 RISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQST 186
Query: 203 PKGRIASRNAPNAVANAPKTNTS 225
P+ N V+NAP T+
Sbjct: 187 PQ---------NLVSNAPIAETA 200
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 121/180 (67%)
Query: 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
+F ++ TP+E LR+++R + A R ++RE L+ +EKK++ +IKK AK G A +I+A
Sbjct: 4 LFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMA 63
Query: 84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
+ LVR R+ + RA ++ V+ Q L ++ S++ M+G TKAM MN+Q+K +
Sbjct: 64 KDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLPQIQ 123
Query: 144 KLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAP 203
K++ EF+KQ+ MDM E+M+++ID+ + ++ EEE++ + +QVLDE+G+++ +L++ P
Sbjct: 124 KIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLP 183
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 1/179 (0%)
Query: 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83
+F +P+E LR +R + A R ++RE L E+ L+ EIK +AK GN A RI A
Sbjct: 7 LFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQA 66
Query: 84 RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQA 143
R L+RLR + ++ Q++ ++ Q + S + MRGAT+ + MN+ M A
Sbjct: 67 RDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMA 126
Query: 144 KLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSA 202
++ ++F++++ M+ EM+ E++D+ L++D+ EE E + N+VLDEIGVD++ L A
Sbjct: 127 RITQQFERENEIMEQRQEMIDENMDDALEEDDEEEADELV-NKVLDEIGVDLSQGLPDA 184
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 128/221 (57%), Gaps = 16/221 (7%)
Query: 22 MNIFR-KKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATR 80
M+ F K TP++ L++SKR+++ R ++RE+ L++ E++ + +IK+ AK G +
Sbjct: 1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAK 60
Query: 81 ILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPA 140
+A LV+LR Q+ ++ ++ + V+T T + A+ +++ M ATKAM MN+Q
Sbjct: 61 RMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLV 120
Query: 141 KQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLS 200
+ K + E++KQ+ +++MT EMM + ++ E +EE +++ ++V+DE+ +D ++
Sbjct: 121 QLQKTMMEYEKQTQRVEMTEEMMQDMFEDD----EVDEEADDILSKVVDEVCLDNYQKMP 176
Query: 201 SAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASL 241
S +A ++ P + + TS+ + E+L K SL
Sbjct: 177 S-----VAQKDLPYS------SKTSTFKTEDEELNKLLQSL 206
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 101/185 (54%)
Query: 18 LKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEA 77
+++ MNI + K PK+ LR+ +R + R +ER+I +Q EE+ + IK+ AK +
Sbjct: 1 MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60
Query: 78 ATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQM 137
+ + LA+++V R+ + L ++AQ+ ++ H A + + + M +N M
Sbjct: 61 SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120
Query: 138 KPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIAS 197
K + A ++EF K+ + + E ++E+ID LD ++ EEE +E ++VL I + A+
Sbjct: 121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAA 180
Query: 198 QLSSA 202
+L A
Sbjct: 181 ELPVA 185
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 101/179 (56%), Gaps = 3/179 (1%)
Query: 25 FRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILAR 84
F KK TP+E +++ KR++ RG++ ++ A+ ++EKK V IK+ K G++ + + LA+
Sbjct: 4 FLKKPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAK 63
Query: 85 QLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAK 144
++V R+ + ++AQ+ V+ Q+ A T + + +T+ M MN +K + K
Sbjct: 64 EIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNK 123
Query: 145 LIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAP 203
++ + + + EM+S+ D + ++ EEE E N+++DEI V Q+SSAP
Sbjct: 124 VMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEMEVNKIMDEILVS-GPQVSSAP 179
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 98/185 (52%), Gaps = 7/185 (3%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PK+ + E + R ++R+I +Q E++K+ IK++AK GN A
Sbjct: 1 MGLFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREAC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
ILA+++V+ ++ + L S+A + V + A +S ++ +T+ M AM +K
Sbjct: 61 VILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKL 120
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ 198
P QA + +E K+ + + EM+ ++ + D+DE EE+ E +++L E+ A
Sbjct: 121 PEIQATM-RELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEV---TAGA 176
Query: 199 LSSAP 203
L AP
Sbjct: 177 LGKAP 181
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PK+ + E + R ++R+I +Q E++K+ IK++AK GN A
Sbjct: 1 MGLFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREAC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
ILA+++V ++ + L S+A + V + A +S ++ +T+ M AM +K
Sbjct: 61 VILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKI 120
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ 198
P QA + ++ K+ + + EM+ ++ + D+DE EE+ E +++L EI A
Sbjct: 121 PEIQATM-RDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEI---TAGA 176
Query: 199 LSSAP 203
L AP
Sbjct: 177 LGKAP 181
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 7/185 (3%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PKE + E + R V+R+I +Q EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
+LA++++R R+ ++ L S+A + V + A ++ ++ +T+ M AM +K
Sbjct: 61 VVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 120
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ 198
P QA + +E K+ + + EM+ ++ + D++E EE E +++L EI A
Sbjct: 121 PEIQATM-RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGA 176
Query: 199 LSSAP 203
L AP
Sbjct: 177 LGKAP 181
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 7/185 (3%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PKE + E + R V+R+I +Q EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
+LA++++R R+ ++ L S+A + V + A ++ ++ +T+ M AM +K
Sbjct: 61 VVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 120
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ 198
P QA + +E K+ + + EM+ ++ + D++E EE E +++L EI A
Sbjct: 121 PEIQATM-RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGA 176
Query: 199 LSSAP 203
L AP
Sbjct: 177 LGKAP 181
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 7/185 (3%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PKE + E + R V+R+I +Q EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
+LA++++R R+ ++ L S+A + V + A ++ ++ +T+ M AM +K
Sbjct: 61 VVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 120
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ 198
P QA + +E K+ + + EM+ ++ + D++E EE E +++L EI A
Sbjct: 121 PEIQATM-RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGA 176
Query: 199 LSSAP 203
L AP
Sbjct: 177 LGKAP 181
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PKE + E + R V+R+I +Q EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKP 139
+LA++++R R+ ++ L S+A + V + A ++ ++ +T+ M AM +K
Sbjct: 61 VVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 120
Query: 140 AKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQL 199
+ ++E K+ + + EM+ ++ + D++E EE E +++L EI A L
Sbjct: 121 PEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEI---TAGAL 177
Query: 200 SSAP 203
AP
Sbjct: 178 GKAP 181
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PK+ + E + R ++R+I +Q EE+K+ IK AK G +
Sbjct: 1 MGLFGKTQEKPPKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKP 139
ILA+++++ ++ I L S+AQ+ V + + ++ ++ +T+ M AM
Sbjct: 61 IILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQS---- 116
Query: 140 AKQAKLIKEFQKQSAQMDMTIEMMS-----ESIDETLDKDEAEEETEELTNQVLDEIGVD 194
L+K + Q+ D++ EMM E +++TL+ + EEE EE +D+I +
Sbjct: 117 -----LVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFE 171
Query: 195 I-ASQLSSAPKGRIASRNAPNAV-ANAPKTNTSSESADVEDLEKRFASLR 242
I A L AP ++ P A+ A A S E ++E+++ R A+LR
Sbjct: 172 ITAGALGKAP-SKVTDLPDPVAIGATAAPEEESEEEEEIEEMQSRLAALR 220
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 8/225 (3%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PKE + E + R V+R+I +Q EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
+LA++++R R+ ++ L S+A + V + A ++ ++ +T+ M AM +K
Sbjct: 61 VVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 120
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ 198
P QA + +E K+ + + EM+ ++ + D++E EEE E +++L EI A
Sbjct: 121 PEIQATM-RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI---TAGA 176
Query: 199 LSSAPKGRIASRNAPNAVANAPKTNTSSESADVED-LEKRFASLR 242
L AP + P + E + + ++ R A+LR
Sbjct: 177 LGKAPSKVTDALPEPEPSGAMAASEDEEEEEEALEAMQSRLATLR 221
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 8/225 (3%)
Query: 22 MNIFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAAT 79
M +F K + PKE + E + R V+R+I +Q EE+K+ +K AK G +
Sbjct: 1 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC 60
Query: 80 RILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK- 138
+LA++++R R+ ++ L S+A + V + A ++ ++ +T+ M AM +K
Sbjct: 61 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 120
Query: 139 PAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQ 198
P QA + +E K+ + + EM+ ++ + D++E EEE E +++L EI A
Sbjct: 121 PEIQATM-RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI---TAGA 176
Query: 199 LSSAPKGRIASRNAPNAVANAPKTNTSSESADVED-LEKRFASLR 242
L AP + P + E + + ++ R A+LR
Sbjct: 177 LGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLR 221
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 15/169 (8%)
Query: 74 GNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAM 133
GN RI A +R + Q N A++ VA Q ++ M G K+M A
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 134 NQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGV 193
+ M K + L+ +F+ Q +D+ + M +++ T + + + L +++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 194 DIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
D++ +L P+G+ S TS S + ++L +R A LR
Sbjct: 163 DLSMEL---PQGQTGS------------VGTSVASTEQDELSQRLARLR 196
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 71 AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAM 130
+ GN RI A +R + Q N A++ VA Q ++ M G K+M
Sbjct: 40 IQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 131 VAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190
A + M K + L+ +F+ Q +D+ + M ++ T + + + L ++ DE
Sbjct: 100 DATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADE 159
Query: 191 IGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
G+D+ +L P+G+ S TS SA+ ++L +R A LR
Sbjct: 160 AGLDLNMEL---PQGQTGS------------VGTSVASAEQDELSQRLARLR 196
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 74 GNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAM 133
GN RI A +R + Q N A++ VA Q ++ M G K M A
Sbjct: 43 GNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDAT 102
Query: 134 NQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGV 193
+ M K + L+++F++Q +D+ M +S+ T + + + L ++ DE G+
Sbjct: 103 LKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGL 162
Query: 194 DIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
D+ +L P+G+ S TS SA+ ++L +R A LR
Sbjct: 163 DLNMEL---PQGQTGS------------VGTSVASAEQDELSQRLAKLR 196
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 71 AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAM 130
+ GN RI A +R + Q N A++ VA Q ++ M G K+M
Sbjct: 40 IQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 131 VAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190
A + M K + L+ +F+ Q +D+ + M +++ T + + + L ++ DE
Sbjct: 100 DATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADE 159
Query: 191 IGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
G+D+ +L P+G+ S TS SA+ ++L +R A LR
Sbjct: 160 AGLDLNMEL---PQGQTGS------------VGTSVASAEQDELSQRLARLR 196
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 71 AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAM 130
+ GN RI A +R + Q N A++ VA Q ++ M G K+M
Sbjct: 40 IQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 131 VAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190
A + M K + L+ +F+ Q +D+ + M +++ T + + + L ++ DE
Sbjct: 100 DATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADE 159
Query: 191 IGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
G+D+ +L P+G+ S TS SA+ ++L +R A LR
Sbjct: 160 AGLDLNMEL---PQGQTGS------------VGTSVASAEQDELSQRLARLR 196
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 71 AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAM 130
+ GN RI A +R + Q N A++ VA Q ++ M G K+M
Sbjct: 40 IQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 131 VAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190
+ M K + L+ +F+ Q +D+ + M +++ T + + + L +++ DE
Sbjct: 100 DTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADE 159
Query: 191 IGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
G+D+ +L P+G+ S TS S + ++L +R A LR
Sbjct: 160 AGLDLNMEL---PQGQTGS------------VGTSVASTEQDELSQRLARLR 196
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 71 AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAM 130
+ GN RI A +R + Q N A++ VA Q ++ M G K+M
Sbjct: 40 IQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 131 VAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190
A + M K + L+ +F+ Q +D+ + M +++ T + + + L ++ DE
Sbjct: 100 DATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADE 159
Query: 191 IGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
G+D+ +L P+G+ S TS SA+ ++L +R A LR
Sbjct: 160 AGLDLNMEL---PQGQTGS------------VGTSVASAEQDELSQRLARLR 196
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%)
Query: 67 IKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGA 126
+KK + GN RI A+ +R + Q N ++I VA+ + S++ M
Sbjct: 33 LKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANI 92
Query: 127 TKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQ 186
K+M + M K +++ +F++Q +D+ + ++++T ++ + L +Q
Sbjct: 93 VKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQ 152
Query: 187 VLDEIGVDIASQLSSAPKGRI 207
V DE G+++ Q+ SAP ++
Sbjct: 153 VADEHGLNVGMQMGSAPSEKV 173
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 13/178 (7%)
Query: 65 AEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMR 124
A++KK + N R+ A +R + + N +++ VA+ Q ++ M
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 125 GATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELT 184
TKA+ M K + ++ F++Q +D+ +M +S+ +E+ + L
Sbjct: 91 QVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLI 150
Query: 185 NQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
Q+ +E G+++ QLS P+G A SS + + L +R A+LR
Sbjct: 151 VQIAEENGLEVLDQLSQLPEG-------------ASAVGESSVRSQEDQLSRRLAALR 195
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 71 AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAM 130
+ GN RI A +R + Q N A++ VA Q ++ M G K+M
Sbjct: 40 IQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 131 VAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190
A + M K + L+ +F+ Q +D+ + M +++ T + + + L ++ DE
Sbjct: 100 DATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADE 159
Query: 191 IGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
G+D+ +L P+G+ S A S S + ++L +R A LR
Sbjct: 160 AGLDLNMEL---PQGQTGSVGA------------SVASTEQDELSQRLARLR 196
>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A
PE=2 SV=1
Length = 196
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Query: 65 AEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMR 124
A++KK N R+ A +R + + N +++ VA+ Q ++ M
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 125 GATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELT 184
TKA+ M K + ++ F++Q +D+ +M +S+ +E+ + L
Sbjct: 91 QVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLI 150
Query: 185 NQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
Q+ +E G+++ QLS P+G A SS + + L +R A+LR
Sbjct: 151 MQIAEENGLEVLDQLSQLPEG-------------ASAVGESSVRSQEDQLSRRLAALR 195
>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A
PE=1 SV=1
Length = 196
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Query: 65 AEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMR 124
A++KK N R+ A +R + + N +++ VA+ Q ++ M
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 125 GATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELT 184
TKA+ M K + ++ F++Q +D+ +M +S+ +E+ + L
Sbjct: 91 QVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLI 150
Query: 185 NQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLR 242
Q+ +E G+++ QLS P+G A SS + + L +R A+LR
Sbjct: 151 MQIAEENGLEVLDQLSQLPEG-------------ASAVGESSVRSQEDQLSRRLAALR 195
>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2
OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1
Length = 200
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 76/147 (51%)
Query: 56 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYA 115
++ EE+ + IK + K + + LAR++V R+ + L ++AQ+ ++ H A
Sbjct: 10 IEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIA 69
Query: 116 STSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDE 175
+ + + + M +N MK + A ++ F K+ + + E +S+++D LD ++
Sbjct: 70 TAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSED 129
Query: 176 AEEETEELTNQVLDEIGVDIASQLSSA 202
EEE EE ++VL I + A++L A
Sbjct: 130 IEEEIEEEVDKVLTAIAGETAAELPEA 156
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 67 IKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM--- 123
+KK GN RI A +R +Q+ NL ++I V++ Q ++S M
Sbjct: 36 VKKAITKGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGV 95
Query: 124 -RGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEE 182
RG +AM MN +M ++++ +F+ Q +++ M++++ D +E+ +
Sbjct: 96 VRGMDRAMKTMNLEMI----SQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDL 151
Query: 183 LTNQVLDEIGVDIASQLS---SAPKGRIASRNAP 213
L V DE G++ ++ S P + + AP
Sbjct: 152 LMQTVADEAGLEFNQNMNNNLSVPAASVPTPAAP 185
>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a
PE=2 SV=1
Length = 198
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 65 AEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMR 124
A++KK + N R+ A +R + + N +++ VA+ Q ++ M
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMT 90
Query: 125 GATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELT 184
TKA+ M K + ++ +F+ Q +D+ +M +S+ +++ ++L
Sbjct: 91 QVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLI 150
Query: 185 NQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVED-LEKRFASLR 242
Q+ +E G+++ QLS P G +A+ TS+ + + ED L +R A+LR
Sbjct: 151 LQIAEESGLEVEDQLSQLPAG-------ASALG-----ETSARAQEKEDQLSRRLAALR 197
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Query: 31 PKEALRESKRDMATATRGVE---REIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLV 87
PKE R + + R +E RE+ LQ + ++L IKK+AK + R+ A++L
Sbjct: 13 PKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQL---IKKSAKKNDVRTVRLYAKELY 69
Query: 88 RLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIK 147
++ +Q + SRAQ+ V ++S M + M +N ++ + +
Sbjct: 70 QINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMI 129
Query: 148 EFQKQSAQMDMTIEMMSESIDETLD-KDEAEEETEELTNQVLDEIGVDIASQLSSAPKGR 206
E +K+ + + EM+ ++++ D +E +E +E N+++++ + + P
Sbjct: 130 ELEKELMKSGIISEMVDDTMESVGDVGEEMDEAVDEEVNKIVEQYTNEKFKNVDQVPTVE 189
Query: 207 IAS 209
+A+
Sbjct: 190 LAA 192
>sp|A1D5Z0|GUF1_NEOFI Translation factor guf1, mitochondrial OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=guf1 PE=3 SV=1
Length = 683
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 195 IASQLSSAPKGRIASRN-APNAVANAPKTNTSSESA---------DVEDLEKRFASL 241
+A LS+APKG AS AP +ANAP+ TSS S V DLE R A++
Sbjct: 7 LARWLSAAPKGTAASLTRAPFVLANAPRFFTSSASHAGSRSTATKPVSDLENRIAAI 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.120 0.299
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,981,999
Number of Sequences: 539616
Number of extensions: 2368662
Number of successful extensions: 15535
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 403
Number of HSP's that attempted gapping in prelim test: 15115
Number of HSP's gapped (non-prelim): 792
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)