Query 026014
Match_columns 244
No_of_seqs 151 out of 744
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230 Vacuolar assembly/sort 100.0 1.2E-53 2.7E-58 353.6 26.4 223 22-244 1-224 (224)
2 KOG3229 Vacuolar sorting prote 100.0 2.2E-45 4.7E-50 306.8 23.2 220 24-243 3-227 (227)
3 KOG3231 Predicted assembly/vac 100.0 1.6E-41 3.5E-46 275.1 22.4 207 23-243 2-208 (208)
4 KOG3232 Vacuolar assembly/sort 100.0 2.8E-39 6.1E-44 263.6 25.0 190 41-243 13-202 (203)
5 PF03357 Snf7: Snf7; InterPro 99.9 1.9E-25 4.2E-30 184.8 10.5 168 37-206 1-170 (171)
6 KOG1656 Protein involved in gl 99.9 3.5E-22 7.6E-27 167.3 20.6 181 21-209 3-198 (221)
7 PTZ00464 SNF-7-like protein; P 99.9 2.4E-21 5.1E-26 166.6 21.4 186 23-209 3-195 (211)
8 PTZ00446 vacuolar sorting prot 99.8 3.1E-18 6.8E-23 144.8 21.7 164 24-191 4-181 (191)
9 KOG2910 Uncharacterized conser 99.7 1E-14 2.2E-19 121.5 23.4 171 24-206 4-178 (209)
10 KOG1655 Protein involved in va 99.6 3.9E-13 8.5E-18 112.5 18.9 165 24-191 4-174 (218)
11 COG5491 VPS24 Conserved protei 99.5 1.1E-12 2.5E-17 111.7 16.8 188 49-243 5-201 (204)
12 KOG2911 Uncharacterized conser 99.2 1.5E-09 3.3E-14 100.7 20.0 169 35-205 231-400 (439)
13 PRK10698 phage shock protein P 98.1 0.0023 5E-08 55.8 21.7 133 24-156 18-175 (222)
14 KOG1656 Protein involved in gl 98.0 0.002 4.4E-08 54.9 18.6 152 43-201 20-180 (221)
15 PTZ00464 SNF-7-like protein; P 97.9 0.0067 1.5E-07 52.5 21.9 150 41-192 15-174 (211)
16 COG5491 VPS24 Conserved protei 97.9 0.00086 1.9E-08 57.6 15.8 85 108-192 66-153 (204)
17 KOG3229 Vacuolar sorting prote 97.8 0.0051 1.1E-07 52.6 18.2 166 31-205 8-183 (227)
18 KOG3230 Vacuolar assembly/sort 97.8 0.013 2.8E-07 49.8 19.9 157 31-196 17-179 (224)
19 PTZ00446 vacuolar sorting prot 97.7 0.0048 1.1E-07 52.6 16.4 142 42-190 25-176 (191)
20 TIGR02977 phageshock_pspA phag 97.6 0.036 7.8E-07 48.1 23.0 132 24-155 18-174 (219)
21 KOG3232 Vacuolar assembly/sort 97.6 0.019 4E-07 48.0 17.8 175 17-209 3-186 (203)
22 PF04012 PspA_IM30: PspA/IM30 97.3 0.093 2E-06 45.2 22.9 148 19-166 11-187 (221)
23 PF03357 Snf7: Snf7; InterPro 97.2 0.0035 7.5E-08 51.4 9.7 147 45-197 2-155 (171)
24 KOG3231 Predicted assembly/vac 96.6 0.15 3.2E-06 42.4 14.0 158 33-202 18-183 (208)
25 KOG2910 Uncharacterized conser 96.4 0.54 1.2E-05 40.0 18.1 138 41-190 13-164 (209)
26 COG1842 PspA Phage shock prote 96.3 0.65 1.4E-05 40.6 21.9 128 29-159 23-178 (225)
27 PF03398 Ist1: Regulator of Vp 95.7 0.1 2.2E-06 43.4 9.3 152 40-194 2-164 (165)
28 KOG1655 Protein involved in va 95.1 1.9 4.1E-05 36.9 18.4 96 42-137 17-116 (218)
29 KOG2911 Uncharacterized conser 88.2 17 0.00037 34.8 13.5 152 39-195 228-386 (439)
30 PRK13455 F0F1 ATP synthase sub 82.5 27 0.0006 29.1 18.2 50 22-71 43-92 (184)
31 COG1937 Uncharacterized protei 79.9 19 0.00042 26.9 8.2 48 89-136 8-55 (89)
32 PRK13428 F0F1 ATP synthase sub 76.6 74 0.0016 30.6 19.0 141 22-166 18-167 (445)
33 PF02583 Trns_repr_metal: Meta 76.5 27 0.0006 25.6 8.7 48 89-136 4-51 (85)
34 PRK15039 transcriptional repre 73.3 36 0.00079 25.5 8.5 48 89-136 8-55 (90)
35 PRK07352 F0F1 ATP synthase sub 71.0 58 0.0013 26.8 17.1 49 21-70 35-83 (174)
36 TIGR03321 alt_F1F0_F0_B altern 67.2 87 0.0019 27.4 16.9 134 22-159 22-163 (246)
37 cd04776 HTH_GnyR Helix-Turn-He 67.2 48 0.001 25.7 8.1 56 15-70 58-113 (118)
38 PRK06231 F0F1 ATP synthase sub 65.8 86 0.0019 26.8 16.5 49 21-70 64-112 (205)
39 PRK09343 prefoldin subunit bet 61.2 29 0.00063 27.2 5.9 57 20-76 55-117 (121)
40 PF12205 GIT1_C: G protein-cou 61.1 82 0.0018 25.0 8.4 43 12-55 45-87 (123)
41 PRK13460 F0F1 ATP synthase sub 58.7 1E+02 0.0022 25.4 16.1 45 22-67 33-77 (173)
42 PRK14474 F0F1 ATP synthase sub 58.4 1.3E+02 0.0028 26.5 16.4 134 22-159 22-163 (250)
43 PRK11352 regulator protein Frm 56.6 81 0.0018 23.5 8.7 48 89-136 8-55 (91)
44 TIGR01144 ATP_synt_b ATP synth 55.2 1E+02 0.0023 24.3 16.4 49 21-70 11-59 (147)
45 PRK05759 F0F1 ATP synthase sub 51.9 1.2E+02 0.0026 24.2 16.7 50 22-72 21-70 (156)
46 PRK13461 F0F1 ATP synthase sub 51.4 1.3E+02 0.0028 24.3 16.6 48 22-70 22-69 (159)
47 PF07361 Cytochrom_B562: Cytoc 50.8 1.1E+02 0.0023 23.3 8.2 33 65-97 70-102 (103)
48 PRK14472 F0F1 ATP synthase sub 50.4 1.4E+02 0.0031 24.5 17.3 48 22-70 35-82 (175)
49 CHL00019 atpF ATP synthase CF0 45.8 1.7E+02 0.0038 24.2 17.9 50 22-72 41-90 (184)
50 PRK14473 F0F1 ATP synthase sub 45.7 1.6E+02 0.0035 23.8 16.4 48 22-70 25-72 (164)
51 KOG2027 Spindle pole body prot 45.3 2.8E+02 0.006 26.4 13.3 136 57-196 14-162 (388)
52 PRK09720 cybC cytochrome b562; 45.0 1.4E+02 0.003 22.9 8.7 30 68-97 70-99 (100)
53 PF11068 YlqD: YlqD protein; 44.5 1.4E+02 0.003 23.9 7.3 31 38-68 21-51 (131)
54 PF10158 LOH1CR12: Tumour supp 42.8 1.7E+02 0.0038 23.3 13.7 82 48-140 39-120 (131)
55 PRK14471 F0F1 ATP synthase sub 42.0 1.9E+02 0.004 23.5 15.1 48 22-70 25-72 (164)
56 PRK05431 seryl-tRNA synthetase 41.2 3.2E+02 0.007 26.0 11.1 69 38-112 29-98 (425)
57 PF12269 zf-CpG_bind_C: CpG bi 41.0 1.3E+02 0.0029 26.5 7.3 63 10-72 1-64 (236)
58 PF08946 Osmo_CC: Osmosensory 39.4 73 0.0016 20.9 4.0 36 30-65 5-40 (46)
59 PRK13453 F0F1 ATP synthase sub 39.3 2.2E+02 0.0047 23.4 16.6 48 22-70 35-82 (173)
60 COG3783 CybC Soluble cytochrom 38.9 72 0.0016 24.3 4.5 30 66-95 68-97 (100)
61 PF09278 MerR-DNA-bind: MerR, 36.6 1.3E+02 0.0028 20.1 7.0 48 14-64 16-63 (65)
62 PF08569 Mo25: Mo25-like; Int 35.5 2.5E+02 0.0054 26.0 8.6 66 24-89 4-75 (335)
63 PF14584 DUF4446: Protein of u 32.6 2.5E+02 0.0053 23.0 7.2 60 13-73 23-82 (151)
64 PF14712 Snapin_Pallidin: Snap 31.8 2E+02 0.0043 20.8 11.6 71 19-97 6-77 (92)
65 PF02403 Seryl_tRNA_N: Seryl-t 30.0 2.3E+02 0.0051 21.1 10.7 67 40-112 32-99 (108)
66 PF01601 Corona_S2: Coronaviru 29.0 2.8E+02 0.0061 27.9 8.0 85 98-185 231-328 (610)
67 cd01282 HTH_MerR-like_sg3 Heli 27.4 2.1E+02 0.0045 21.7 5.7 26 39-64 83-108 (112)
68 TIGR00414 serS seryl-tRNA synt 27.2 5.5E+02 0.012 24.4 11.5 73 36-112 29-101 (418)
69 PF04799 Fzo_mitofusin: fzo-li 27.1 2.8E+02 0.006 23.3 6.7 32 31-62 114-145 (171)
70 PLN03086 PRLI-interacting fact 26.5 6.2E+02 0.013 25.4 10.0 65 49-119 5-69 (567)
71 PRK15058 cytochrome b562; Prov 25.7 1.5E+02 0.0033 23.6 4.7 85 12-97 26-127 (128)
72 PF08165 FerA: FerA (NUC095) d 24.8 1.8E+02 0.0039 20.3 4.5 26 176-201 8-33 (66)
73 PF12401 DUF3662: Protein of u 24.3 33 0.00072 26.7 0.7 38 12-49 5-44 (116)
74 smart00685 DM14 Repeats in fly 24.3 2.5E+02 0.0053 19.4 6.5 37 56-96 4-40 (59)
75 TIGR03752 conj_TIGR03752 integ 23.9 6.9E+02 0.015 24.4 10.3 38 35-72 57-94 (472)
76 COG1382 GimC Prefoldin, chaper 23.8 2.9E+02 0.0062 21.8 5.8 40 33-72 73-112 (119)
77 PF08653 DASH_Dam1: DASH compl 23.5 1.4E+02 0.0031 20.5 3.6 30 140-170 8-37 (58)
78 KOG2391 Vacuolar sorting prote 23.4 6.2E+02 0.014 23.7 10.0 61 11-71 220-280 (365)
79 PF04977 DivIC: Septum formati 22.9 2.6E+02 0.0057 19.2 7.6 42 41-84 21-62 (80)
80 PF05010 TACC: Transforming ac 21.7 5.3E+02 0.011 22.3 11.2 111 42-157 81-195 (207)
81 cd04779 HTH_MerR-like_sg4 Heli 21.5 4.2E+02 0.009 21.0 8.2 29 35-63 79-107 (134)
82 PF04508 Pox_A_type_inc: Viral 21.4 1.2E+02 0.0025 17.0 2.3 17 41-57 5-21 (23)
83 PF10234 Cluap1: Clusterin-ass 21.4 6E+02 0.013 22.8 11.8 41 32-72 164-204 (267)
84 COG0172 SerS Seryl-tRNA synthe 21.1 7.6E+02 0.016 23.8 10.5 69 38-111 30-99 (429)
85 KOG3478 Prefoldin subunit 6, K 21.0 4.2E+02 0.009 20.8 6.3 43 19-62 52-94 (120)
86 PF06305 DUF1049: Protein of u 20.6 1.7E+02 0.0036 19.8 3.6 20 42-61 46-65 (68)
87 PF09424 YqeY: Yqey-like prote 20.6 4.5E+02 0.0098 21.1 11.5 36 151-194 75-110 (143)
88 PRK07857 hypothetical protein; 20.5 3.9E+02 0.0085 20.6 5.9 37 39-75 30-66 (106)
89 PRK14475 F0F1 ATP synthase sub 20.2 4.8E+02 0.01 21.2 17.6 39 32-70 36-74 (167)
No 1
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-53 Score=353.60 Aligned_cols=223 Identities=49% Similarity=0.659 Sum_probs=202.1
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRA 101 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a 101 (244)
|++||++++|.|.+|+++|.|.+++|+|+|++.+++-++|++..+||+.+|.|+++++||+|++|||.|+|+.+|+.+++
T Consensus 1 m~lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka 80 (224)
T KOG3230|consen 1 MDLFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA 80 (224)
T ss_pred CCcccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHH
Q 026014 102 QIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETE 181 (244)
Q Consensus 102 ql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d 181 (244)
||.+|+.++|+.+++..++.+|+.++++|..||+.||+|+++++|.+|++|.+.|++.+|||+|++|++++++++|+|.|
T Consensus 81 qiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd 160 (224)
T KOG3230|consen 81 QIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETD 160 (224)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHhcchhhhhcccCCCCcccCCCCCc-cccCCCCCCCCCCCccHHHHHHHHHhhhCC
Q 026014 182 ELTNQVLDEIGVDIASQLSSAPKGRIASRNAPN-AVANAPKTNTSSESADVEDLEKRFASLRRI 244 (244)
Q Consensus 182 ~lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ddL~~RL~aLr~~ 244 (244)
++|+|||||+|++++.+|.++|++..+.|.+.. -...+++++.+.....+|||++||++||+.
T Consensus 161 ~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk~ 224 (224)
T KOG3230|consen 161 DLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRKD 224 (224)
T ss_pred HHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhcC
Confidence 999999999999999999999995433332211 011122233334456789999999999974
No 2
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-45 Score=306.83 Aligned_cols=220 Identities=28% Similarity=0.435 Sum_probs=192.4
Q ss_pred HcCC--CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 24 IFRK--KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRA 101 (244)
Q Consensus 24 lFg~--k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a 101 (244)
+||+ +|||||++|+|++.||++.|+|||++..+++++++.+..||+++|+||+..|++||+++++.||++.+||..+|
T Consensus 3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4554 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHH
Q 026014 102 QIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETE 181 (244)
Q Consensus 102 ql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d 181 (244)
||+||.++|..+.++..++++|.+++.+|+.||+++.+|+|..||.+|+++|+++|+|+||++++|+++.|.++.++++|
T Consensus 83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d 162 (227)
T KOG3229|consen 83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD 162 (227)
T ss_pred HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHhcchhhhhcccCCCCcccCCCCCccccCCC---CCCCCCCCccHHHHHHHHHhhhC
Q 026014 182 ELTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAP---KTNTSSESADVEDLEKRFASLRR 243 (244)
Q Consensus 182 ~lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ddL~~RL~aLr~ 243 (244)
++|++||.+|+.+-.+.+|.+|.......+++.+.|.+. ...+.+.++++.+++.||++||+
T Consensus 163 eEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 163 EEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred HHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 999999999997777777766665422211122222111 11111224567899999999996
No 3
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-41 Score=275.11 Aligned_cols=207 Identities=39% Similarity=0.627 Sum_probs=193.0
Q ss_pred HHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQ 102 (244)
Q Consensus 23 ~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq 102 (244)
++|+++ ||+++.|++.|.||++.|.|+|++.+++++|++++.+||+.++.||.++||++|++||..|||..+-+..+++
T Consensus 2 niF~Kk-tvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~k 80 (208)
T KOG3231|consen 2 NIFKKK-TVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSK 80 (208)
T ss_pred CcccCC-CHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 689865 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHH
Q 026014 103 IRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEE 182 (244)
Q Consensus 103 l~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~ 182 (244)
+.+++.|-..+.++..++++|+..++.|+.||+.|+++++..+|.+|....++|++.+|||+|++|+.+|.+++++|.++
T Consensus 81 i~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~a 160 (208)
T KOG3231|consen 81 ITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQA 160 (208)
T ss_pred hhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhhhcccCCCCcccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014 183 LTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR 243 (244)
Q Consensus 183 lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~ 243 (244)
+|++|||||||++++++.++|+... .+...+ .....+|+.+.|++||+
T Consensus 161 iVNqVLDEIGIEisgKma~~P~a~s-~~~~st------------~kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 161 IVNQVLDEIGIEISGKMAKAPSARS-LPSAST------------SKATISDIERQLAALRS 208 (208)
T ss_pred HHHHHHHHhhhhhcchhccCCccCC-CCcccc------------CCCcHHHHHHHHHHhcC
Confidence 9999999999999999999997432 211110 12457889999999985
No 4
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-39 Score=263.57 Aligned_cols=190 Identities=24% Similarity=0.391 Sum_probs=168.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSIS 120 (244)
Q Consensus 41 ~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~ 120 (244)
.|+.+.++|.|+.++|+++||.++.++|+|+++||++.|||||.|+||+|++..+|+++++++|+|..++|+|.++.+++
T Consensus 13 ~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt 92 (203)
T KOG3232|consen 13 DLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVT 92 (203)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcchhhhhcc
Q 026014 121 TGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLS 200 (244)
Q Consensus 121 ~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~~~~~~L~ 200 (244)
++|.+++++|....+.||+++|+.+|+.|++||+++++..++|+++|++++..+.|+++||.|+++|+||+|++++..||
T Consensus 93 ~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp 172 (203)
T KOG3232|consen 93 KSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELP 172 (203)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCC
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999887
Q ss_pred cCCCCcccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014 201 SAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR 243 (244)
Q Consensus 201 ~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~ 243 (244)
.-..++++.+ .+. . .+++|+|.+||++||.
T Consensus 173 ~~~~~a~~~~--t~~----------~-~~e~d~L~qRLaaLR~ 202 (203)
T KOG3232|consen 173 QNVVPAISVK--TSA----------V-VDEEDDLTQRLAALRA 202 (203)
T ss_pred CCCCCCcCCC--Ccc----------c-cchhhHHHHHHHHHhc
Confidence 5322222221 000 1 2334999999999996
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.92 E-value=1.9e-25 Score=184.79 Aligned_cols=168 Identities=27% Similarity=0.401 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 37 ESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYAS 116 (244)
Q Consensus 37 ~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~ 116 (244)
++...|+.+++.|++++.+|+...+++..++++++++|++..|++|++..++.+++..+++....+|+++..+|+++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcchh-
Q 026014 117 TSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDI- 195 (244)
Q Consensus 117 ~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~~~- 195 (244)
..++.+|+.++++|+.+|+.+++++|..+|++|.++++.+++++++|++.++.. .+++++|++++++++++|++.+.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999988654 33457789999999999999888
Q ss_pred -hhhcccCCCCc
Q 026014 196 -ASQLSSAPKGR 206 (244)
Q Consensus 196 -~~~L~~aP~~~ 206 (244)
...||++|++.
T Consensus 159 ~~~~lp~~P~~~ 170 (171)
T PF03357_consen 159 EKQQLPSVPSTE 170 (171)
T ss_dssp -SS-SS---HH-
T ss_pred ccccCCcCCCCC
Confidence 88889888764
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.5e-22 Score=167.29 Aligned_cols=181 Identities=22% Similarity=0.302 Sum_probs=140.3
Q ss_pred HHH-HcCCC-----CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 026014 21 TMN-IFRKK-----TTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQIT 94 (244)
Q Consensus 21 ~~~-lFg~k-----~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~ 94 (244)
+|+ ||||. ++|++. ...||.+..-| +++-+..++++..++...+++.-.. .|..|.++++++|.+.
T Consensus 3 ~~~~~FG~~k~~~~~t~~ea----I~kLrEteemL---~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E 74 (221)
T KOG1656|consen 3 MFSRLFGGMKQEAKPTPQEA----IQKLRETEEML---EKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYE 74 (221)
T ss_pred HHHHHhCcccccCCCChHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 455 89884 455544 44567777777 4455555777777777744444333 4556777776666554
Q ss_pred -HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhc--
Q 026014 95 -NLQGSRAQIRGVATH---TQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESID-- 168 (244)
Q Consensus 95 -~l~~~~aql~sv~~q---l~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~-- 168 (244)
+|.+.-..+.++..| |++|+++..|..+|+.++++||.+++.||+++|+.+|+++.+|.+.+..|+++|+.+++
T Consensus 75 ~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~ 154 (221)
T KOG1656|consen 75 KQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFG 154 (221)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 455777777777777 67899999999999999999999999999999999999999999999999999999986
Q ss_pred cccchhhhHHHHHHHHHHHHHHhcchhhh---hcccCCCCcccC
Q 026014 169 ETLDKDEAEEETEELTNQVLDEIGVDIAS---QLSSAPKGRIAS 209 (244)
Q Consensus 169 ~~~d~~~~eeE~d~lv~qvldE~~~~~~~---~L~~aP~~~~~~ 209 (244)
..+|+++...|+|+|-+..++.-.+++.. .||++|++.+|.
T Consensus 155 a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lPa 198 (221)
T KOG1656|consen 155 ADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALPA 198 (221)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCc
Confidence 45898899999999999999987766553 467777766654
No 7
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.89 E-value=2.4e-21 Score=166.65 Aligned_cols=186 Identities=19% Similarity=0.278 Sum_probs=152.1
Q ss_pred HHcCCCC-ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----HH
Q 026014 23 NIFRKKT-TPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITN----LQ 97 (244)
Q Consensus 23 ~lFg~k~-~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~----l~ 97 (244)
.|||+++ .|+..++++...++.....|++.+.+++.+..+.+..+++....+ ..+.|..|..++|.||.+.+ ++
T Consensus 3 rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~-~~~~K~~Al~~LK~KK~~E~ql~~l~ 81 (211)
T PTZ00464 3 RLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMT-QSRHKQRAMQLLQQKRMYQNQQDMMM 81 (211)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888764 678889999999999999999999999988888777776554322 23468889999999997765 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhc--cccchhh
Q 026014 98 GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESID--ETLDKDE 175 (244)
Q Consensus 98 ~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~--~~~d~~~ 175 (244)
....+|+.+.+.|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++.++++..+.|+++|+.+++ +.+|+++
T Consensus 82 ~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdE 161 (211)
T PTZ00464 82 QQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDE 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 56677777788899999999999999999999999999999999999999999999999999999999774 4567777
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhcccCCCCcccC
Q 026014 176 AEEETEELTNQVLDEIGVDIASQLSSAPKGRIAS 209 (244)
Q Consensus 176 ~eeE~d~lv~qvldE~~~~~~~~L~~aP~~~~~~ 209 (244)
.++|++++..++..+......+..|++|+..+|.
T Consensus 162 Le~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~ 195 (211)
T PTZ00464 162 MLGELDALDFDMEKEADASYLADALAVPGTKLPD 195 (211)
T ss_pred HHHHHHHHHHHHhccccchhhhccccCCCCCCCC
Confidence 7777777777665555444456677888877665
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.82 E-value=3.1e-18 Score=144.77 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=135.8
Q ss_pred HcCCCC-Ch---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 026014 24 IFRKKT-TP---------KEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQI 93 (244)
Q Consensus 24 lFg~k~-~~---------ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~ 93 (244)
|||++. .| +..+.+++..|+.++..|++...+|+..-.++...+|+++++|+.. .|..++|+||.+
T Consensus 4 ~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~----~Al~~LkrKK~~ 79 (191)
T PTZ00446 4 WFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMS----NAKILLKRKKLY 79 (191)
T ss_pred ccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHH
Confidence 799853 33 1247888888999999999999999888888888889999988854 467889999977
Q ss_pred HHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhcc
Q 026014 94 TNL-QGSRAQIRGVA---THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDE 169 (244)
Q Consensus 94 ~~l-~~~~aql~sv~---~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~ 169 (244)
.+. .++.+++..++ ..|+++..+..+..+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++++.++.+
T Consensus 80 E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~ 159 (191)
T PTZ00446 80 EQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLN 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 663 36666666665 45788999999999999999999999999999999999999999999999999999987545
Q ss_pred ccchhhhHHHHHHHHHHHHHHh
Q 026014 170 TLDKDEAEEETEELTNQVLDEI 191 (244)
Q Consensus 170 ~~d~~~~eeE~d~lv~qvldE~ 191 (244)
..|+++.++|++++.++-+++-
T Consensus 160 ~~DEdELe~ELe~Le~e~l~~~ 181 (191)
T PTZ00446 160 NVDDDEIDKELDLLKEQTMEEK 181 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5777778888888777666654
No 9
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.71 E-value=1e-14 Score=121.48 Aligned_cols=171 Identities=13% Similarity=0.213 Sum_probs=140.4
Q ss_pred HcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 026014 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQ-GSRAQ 102 (244)
Q Consensus 24 lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aq 102 (244)
+|++++..-+ ...++..|...-+.|-+..+++++........++++++.|..+.|+ -++++++++..|+ ++..|
T Consensus 4 lfsK~~~Itd-~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAl----llLKkKryQE~Ll~qt~~q 78 (209)
T KOG2910|consen 4 LFSKKSRITD-QDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRAL----LLLKKKRYQEELLTQTDNQ 78 (209)
T ss_pred cccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 8987533222 2345666777777888888888888888899999999999977665 5699999999977 67777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHH
Q 026014 103 IRGVA---THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEE 179 (244)
Q Consensus 103 l~sv~---~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE 179 (244)
|..++ +.|+.+....+|..+++.++.+++++|+.|+++.|+.+|++-.+.++..+.|++++++.|.. .|+++..+|
T Consensus 79 L~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~E 157 (209)
T KOG2910|consen 79 LINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAE 157 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHH
Confidence 77665 55677888899999999999999999999999999999999999999999999999999985 465666777
Q ss_pred HHHHHHHHHHHhcchhhhhcccCCCCc
Q 026014 180 TEELTNQVLDEIGVDIASQLSSAPKGR 206 (244)
Q Consensus 180 ~d~lv~qvldE~~~~~~~~L~~aP~~~ 206 (244)
+|++......+ .++|.+|+..
T Consensus 158 ldaLese~~~e------~e~PevPs~e 178 (209)
T KOG2910|consen 158 LDALESELEVE------AELPEVPSTE 178 (209)
T ss_pred HHHHHHHhhhh------hhcCCCCCCC
Confidence 77777766665 6789999885
No 10
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.9e-13 Score=112.47 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=142.1
Q ss_pred HcCCC--CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----HH
Q 026014 24 IFRKK--TTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITN----LQ 97 (244)
Q Consensus 24 lFg~k--~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~----l~ 97 (244)
+||.+ +.|-+.+.++.-.+++..-.++..|.+|+.+--+++.+|++.-...-..+.|.-|-.+++.||.+++ |+
T Consensus 4 iFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~ 83 (218)
T KOG1655|consen 4 IFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLD 83 (218)
T ss_pred cccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 3588899999999999999999999999999999999999986555567888889999999997755 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhH
Q 026014 98 GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAE 177 (244)
Q Consensus 98 ~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~e 177 (244)
.....|+.+.+..++.+.+..++.+|+.+++.|+...+.+|+++|..+=+++..-|+..++++|+++...+..- .++
T Consensus 84 ~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide 160 (218)
T KOG1655|consen 84 QQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDE 160 (218)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCH
Confidence 77888999999999999999999999999999999999999999999999999999999999999998876421 234
Q ss_pred HHHHHHHHHHHHHh
Q 026014 178 EETEELTNQVLDEI 191 (244)
Q Consensus 178 eE~d~lv~qvldE~ 191 (244)
++++.+++.+.+|.
T Consensus 161 ~dL~aELdaL~~E~ 174 (218)
T KOG1655|consen 161 ADLDAELDALGQEL 174 (218)
T ss_pred HHHHHHHHHHHhHh
Confidence 55555555554443
No 11
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.51 E-value=1.1e-12 Score=111.73 Aligned_cols=188 Identities=23% Similarity=0.262 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 49 VEREIAALQLEEKKLVAEIKKTAKTG--NEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGA 126 (244)
Q Consensus 49 Lere~~klek~ekkl~~~iKka~kkg--~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~ 126 (244)
+++++.++-.+.+...+......++- .....+++++.+++.++++.+|...+ ++|++..++....-+|..+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~-------sRLqs~~~~~~e~~~m~~v 77 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASI-------SRLQSLDTMLFEKVVMRQV 77 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555555444422 44556677777776666655555555 5555555555555666677
Q ss_pred HHHHHHHHhhCC-HHHHHHHHHHHHHHHHHhhhHH---HHhhhhhccccc--hhhhHHHHHHHHHHHHHHhcchhhhhcc
Q 026014 127 TKAMVAMNQQMK-PAKQAKLIKEFQKQSAQMDMTI---EMMSESIDETLD--KDEAEEETEELTNQVLDEIGVDIASQLS 200 (244)
Q Consensus 127 ~~~Mk~~n~~m~-l~~i~~~M~ef~ke~e~~~~~~---e~m~d~~~~~~d--~~~~eeE~d~lv~qvldE~~~~~~~~L~ 200 (244)
+..|..++..|| ++.|..+|+.|+.++..++... +.|.+.++...+ ..++.+++|++++.|++|+|+++.....
T Consensus 78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 777777788888 9999999999999999998888 666666665553 4467889999999999999999995555
Q ss_pred cCCCCcccCC-CCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014 201 SAPKGRIASR-NAPNAVANAPKTNTSSESADVEDLEKRFASLRR 243 (244)
Q Consensus 201 ~aP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~ 243 (244)
++|....... .+...+|.+.....+.+...++.|++||..|++
T Consensus 158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA 201 (204)
T ss_pred cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence 5554211110 000000001111111223557899999999984
No 12
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.5e-09 Score=100.73 Aligned_cols=169 Identities=12% Similarity=0.141 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 35 LRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALY 114 (244)
Q Consensus 35 ~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~ 114 (244)
+.-....|..+.-.|.+++..|+++-++...+++.+.+.|....|..|++.--+.-|-..++.....+|++|-.+|.++.
T Consensus 231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~ 310 (439)
T KOG2911|consen 231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQ 310 (439)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34467788999999999999999999999999999999999888888877766666677778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcc
Q 026014 115 ASTSISTGMRGATKAMVAMNQ-QMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGV 193 (244)
Q Consensus 115 ~~~~~~~am~~~~~~Mk~~n~-~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~ 193 (244)
++.-+..|++.++.+|+.++. ...+++|..+|+++..-++....++++|+...-+..|. ++++++.+++++..+..-
T Consensus 311 ~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~--~de~lEkEL~~L~~D~~k 388 (439)
T KOG2911|consen 311 TNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDF--EDEDLEKELEDLEADEKK 388 (439)
T ss_pred ccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCcc--chHHHHHHHHHHHhcccc
Confidence 999999999999999999999 56889999999999999999999999999877553332 244555555555544332
Q ss_pred hhhhhcccCCCC
Q 026014 194 DIASQLSSAPKG 205 (244)
Q Consensus 194 ~~~~~L~~aP~~ 205 (244)
.-.-.+|..|..
T Consensus 389 ~e~~~lp~~~~s 400 (439)
T KOG2911|consen 389 NEDLVLPLNSVS 400 (439)
T ss_pred CCccCCCCCCch
Confidence 222234444443
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=98.07 E-value=0.0023 Score=55.80 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=93.9
Q ss_pred HcCCCCChHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-------H
Q 026014 24 IFRKKTTPKEALRESKRDMATA--------------TRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRI-------L 82 (244)
Q Consensus 24 lFg~k~~~ke~~r~~~~~lr~~--------------~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari-------~ 82 (244)
++.+-.+|...++...+.++.. .+.++|+...++....+...+...|+.+|+-+-||. |
T Consensus 18 ~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~ 97 (222)
T PRK10698 18 LLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKL 97 (222)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666678887777776666644 566788888888888888999999999999998887 6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHh
Q 026014 83 ARQLVRLRQQITN----LQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQM 156 (244)
Q Consensus 83 Ak~lvr~rk~~~~----l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~ 156 (244)
+..+-..+.++.. ...+..++..+...|..+.+-..+..+=..++.+..++|..+.--.....|..|++--++.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki 175 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRI 175 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 6666666665544 3345666666777777777777777777777777777777765555555565554443333
No 14
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.002 Score=54.89 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=106.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 43 ATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILAR----QLVRLRQQITNLQGSRAQIRGVATHTQALYASTS 118 (244)
Q Consensus 43 r~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~ 118 (244)
..++-.|.--..-|++.+.-++.+|-.-... .|+.|.. -++..=|...+|.+.-+||+++.+.|+.+..+.+
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456666666666666666677777666554 2555543 4777778888899999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHH---hhhhhccccch--hhhHHHHHHHHHHHHHHhcc
Q 026014 119 ISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEM---MSESIDETLDK--DEAEEETEELTNQVLDEIGV 193 (244)
Q Consensus 119 ~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~---m~d~~~~~~d~--~~~eeE~d~lv~qvldE~~~ 193 (244)
-++.=..+-.+|+..-+.|..-.-.--+|+...-|+......++ |++++..-+.. +.+|+|+..+++.+.+|..
T Consensus 96 nA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeel- 174 (221)
T KOG1656|consen 96 NANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEEL- 174 (221)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHH-
Confidence 77777777788888888855444444445566666666555544 77788887763 4678899999988887753
Q ss_pred hhhhhccc
Q 026014 194 DIASQLSS 201 (244)
Q Consensus 194 ~~~~~L~~ 201 (244)
..++-.
T Consensus 175 --d~~ll~ 180 (221)
T KOG1656|consen 175 --DKELLD 180 (221)
T ss_pred --HHHHhc
Confidence 444443
No 15
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.94 E-value=0.0067 Score=52.53 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=100.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 41 DMATATRGVEREIAALQLEEKKLVAEI---KKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYAST 117 (244)
Q Consensus 41 ~lr~~~r~Lere~~klek~ekkl~~~i---Kka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~ 117 (244)
.++-++..|+.....+++..+++..++ |+.++++.-.+-.-.-+.+++.=|....|.....++.+....|+....+.
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888777653 44455554322222344566666666667777888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHh---hhHHHHhhhhhccccc--hhhhHHHHHHHHHHHHHH
Q 026014 118 SISTGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQM---DMTIEMMSESIDETLD--KDEAEEETEELTNQVLDE 190 (244)
Q Consensus 118 ~~~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~---~~~~e~m~d~~~~~~d--~~~~eeE~d~lv~qvldE 190 (244)
.....=..+..+|+..++. +..+.+-| ++++.-++.+ -..++=|+++|...++ .+.+|+|++++++.+..|
T Consensus 95 e~a~~~~~vv~amk~g~ka--LK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e 172 (211)
T PTZ00464 95 ESVKDTKVQVDAMKQAAKT--LKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFD 172 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 7777777888889888888 44554433 3333333333 2333346667777664 346789999999999988
Q ss_pred hc
Q 026014 191 IG 192 (244)
Q Consensus 191 ~~ 192 (244)
..
T Consensus 173 ~~ 174 (211)
T PTZ00464 173 ME 174 (211)
T ss_pred Hh
Confidence 64
No 16
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=97.92 E-value=0.00086 Score=57.60 Aligned_cols=85 Identities=13% Similarity=0.045 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH-HhhhHHHHhhhhhc-cc-cchhhhHHHHHHHH
Q 026014 108 THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSA-QMDMTIEMMSESID-ET-LDKDEAEEETEELT 184 (244)
Q Consensus 108 ~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e-~~~~~~e~m~d~~~-~~-~d~~~~eeE~d~lv 184 (244)
..+.....|..+.+-|..++..|..+.....+++.-.++...-+... .++.+.+.++...+ .. .+..+.++.+..++
T Consensus 66 ~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~ 145 (204)
T COG5491 66 TMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVL 145 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhc
Confidence 55666778888999999999999988888888888877774333333 45788888777764 33 44456777888777
Q ss_pred HHHHHHhc
Q 026014 185 NQVLDEIG 192 (244)
Q Consensus 185 ~qvldE~~ 192 (244)
.++--+..
T Consensus 146 pEi~lel~ 153 (204)
T COG5491 146 PEIGLELD 153 (204)
T ss_pred hhhhhhhh
Confidence 66654443
No 17
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0051 Score=52.62 Aligned_cols=166 Identities=16% Similarity=0.242 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHT 110 (244)
Q Consensus 31 ~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql 110 (244)
|++-+++..|.+++-+|.=-|++.+.=+.-...+.++++++|..-..+=+.-++-+. |.+-+-.+.-.+|-.=..+|
T Consensus 8 ~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLA---KEiv~srk~v~Rly~sKAql 84 (227)
T KOG3229|consen 8 PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILA---KEIVQSRKAVKRLYESKAQL 84 (227)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHHhHHHH
Confidence 566788888999998888888888888888888888888888643333222222222 22222223333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH------HHH---HHHHhhhHHHHhhhhhccccchhhhHHHHH
Q 026014 111 QALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKE------FQK---QSAQMDMTIEMMSESIDETLDKDEAEEETE 181 (244)
Q Consensus 111 ~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~e------f~k---e~e~~~~~~e~m~d~~~~~~d~~~~eeE~d 181 (244)
.+... .|+..-..+.-+++.-+-..|-+.|+. +.. ++.+==+...+|+..+++.++.-++.+|.+
T Consensus 85 nSv~M------~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eeme 158 (227)
T KOG3229|consen 85 NSVSM------QLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEME 158 (227)
T ss_pred hhHHH------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 33322 222222222222222222233333322 222 222333556678888888888777778888
Q ss_pred HHHHHHHHHhcchhh-hhcccCCCC
Q 026014 182 ELTNQVLDEIGVDIA-SQLSSAPKG 205 (244)
Q Consensus 182 ~lv~qvldE~~~~~~-~~L~~aP~~ 205 (244)
+.++.-.|.+.-.+. ..++++|..
T Consensus 159 Ee~deEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 159 EEADEEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred HHHHHHHHHHHHHHhccccccCCcc
Confidence 999998888876665 335555544
No 18
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.013 Score=49.82 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVAE-----IKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRG 105 (244)
Q Consensus 31 ~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~-----iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~s 105 (244)
.+-.+..+.|.|.++...|+-+-++|=.+-|+.-.. +|-.++ +.-..|.|.+.+...|- ++...+-++.+
T Consensus 17 nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAk--dLvRtR~~i~kf~~~ka---qiqaVSl~iQt 91 (224)
T KOG3230|consen 17 NQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAK--DLVRTRRYIKKFQNMKA---QIQAVSLRIQT 91 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344566677888888888888888887766665322 222222 24456778777775554 56667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH-hhhHHHHhhhhhccccchhhhHHHHHHHH
Q 026014 106 VATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQ-MDMTIEMMSESIDETLDKDEAEEETEELT 184 (244)
Q Consensus 106 v~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~-~~~~~e~m~d~~~~~~d~~~~eeE~d~lv 184 (244)
+-+.-..+.+|.-++++|...++-|.-- .+.+|..-...-+..|+- -.++++.|+|+|++.-|+++-++=++.++
T Consensus 92 lkss~sma~aMkGaTkam~~MNrqmnlp----q~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVL 167 (224)
T KOG3230|consen 92 LKSSTSMAQAMKGATKAMAGMNRQMNLP----QIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVL 167 (224)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhccChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 8888888999999999998877766432 244554444444444443 36788999999988777777788889999
Q ss_pred HHHHHHhcchhh
Q 026014 185 NQVLDEIGVDIA 196 (244)
Q Consensus 185 ~qvldE~~~~~~ 196 (244)
+++-=.++-++.
T Consensus 168 DEiGvdl~~qL~ 179 (224)
T KOG3230|consen 168 DEIGVDLASQLS 179 (224)
T ss_pred HHHcccHHHHhc
Confidence 998877775554
No 19
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=97.67 E-value=0.0048 Score=52.57 Aligned_cols=142 Identities=11% Similarity=0.055 Sum_probs=96.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 42 MATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILAR-----QLVRLRQQITNLQGSRAQIRGVATHTQALYAS 116 (244)
Q Consensus 42 lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak-----~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~ 116 (244)
..++|-.|..++..|++.++++..+|.+.-. .||.+.+ .+++.=+....|.....++++....|+.+..+
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~ 99 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999998876543 2333322 24444455555667777777777778888887
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHhhh---HHHHhhhhhccccchhhhHHHHHHHHHHHHHH
Q 026014 117 TSISTGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQMDM---TIEMMSESIDETLDKDEAEEETEELTNQVLDE 190 (244)
Q Consensus 117 ~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~~~---~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE 190 (244)
...+..=..+..+|+..++. +..+.+-| ++++.-++.+.. .++-|+++|+.....+.+|+|++++++.+..|
T Consensus 100 iE~a~~~~ev~~aLk~g~~a--LK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e 176 (191)
T PTZ00446 100 LENMHLHKIAVNALSYAANT--HKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 77777777788888888887 45555433 344444444433 33346677775543456788999988887764
No 20
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.63 E-value=0.036 Score=48.08 Aligned_cols=132 Identities=13% Similarity=0.226 Sum_probs=77.6
Q ss_pred HcCCCCChHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 026014 24 IFRKKTTPKEALRESKRDMATAT--------------RGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVR- 88 (244)
Q Consensus 24 lFg~k~~~ke~~r~~~~~lr~~~--------------r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr- 88 (244)
++.+-.+|...++...++++..+ +.+++++..++....+...++..|+++|+-+-||-.+..-..
T Consensus 18 ~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~ 97 (219)
T TIGR02977 18 LLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKA 97 (219)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555788877766666666544 456777788888888888889999999998876654332111
Q ss_pred ------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 026014 89 ------LRQQI----TNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQ 155 (244)
Q Consensus 89 ------~rk~~----~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~ 155 (244)
...++ ..+..+..+|..+..+|+.+.+...+..+=...+.+...+|..+.--.+...+..|++--++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 11111 11224444555555556666666555544455566665666555333344445554444333
No 21
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.019 Score=48.02 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=98.7
Q ss_pred HHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHH
Q 026014 17 ILKKTMN-IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEE-KKLVAEIKKT---AKTGNEAATRILARQLVRLRQ 91 (244)
Q Consensus 17 ~m~~~~~-lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~e-kkl~~~iKka---~kkg~~~~ari~Ak~lvr~rk 91 (244)
++.++++ +|..|++.|++.|.++. +.+=|+.| .+++.-|.+- +.+=.-+.|-..=.+.++.=+
T Consensus 3 s~~~le~~lf~LkF~sk~L~r~a~k------------ceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~Lr 70 (203)
T KOG3232|consen 3 STDKLENHLFDLKFTSKQLQRQAKK------------CEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLR 70 (203)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777 89999999999887765 22222222 2334444430 110001111111123344446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHhhhHHHHhhhhhc
Q 026014 92 QITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK---PAKQAKLIKEFQKQSAQMDMTIEMMSESID 168 (244)
Q Consensus 92 ~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~---l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~ 168 (244)
...++....+++++....-.--.+|..++++|.. +|+.+|=..= .+++... |+.---..+..+.+|+++-.
T Consensus 71 lssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~---alktmNLekis~~MDkFE~q---Fedldvqt~~me~~m~~st~ 144 (203)
T KOG3232|consen 71 LSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDS---ALKTMNLEKISQLMDKFEKQ---FEDLDVQTEVMEKAMSGSTA 144 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHH---hhhhhhHHHHHHHhccCccc
Confidence 6777888888888877766667777778888774 4444443321 3344444 44444445666788887644
Q ss_pred cccchhhhHHHHHHHHHHHHHHhcchhhhhc-ccCCCCcccC
Q 026014 169 ETLDKDEAEEETEELTNQVLDEIGVDIASQL-SSAPKGRIAS 209 (244)
Q Consensus 169 ~~~d~~~~eeE~d~lv~qvldE~~~~~~~~L-~~aP~~~~~~ 209 (244)
-..+.++.+.=....-++---|+..++...+ |.+|.+....
T Consensus 145 l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~~~t~~~ 186 (203)
T KOG3232|consen 145 LSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAISVKTSAV 186 (203)
T ss_pred ccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcCCCCccc
Confidence 3344555555555555565666776777665 6677776544
No 22
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.30 E-value=0.093 Score=45.22 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=88.6
Q ss_pred HHHHH-HcCCCCChHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026014 19 KKTMN-IFRKKTTPKEALRESKRDMATAT--------------RGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILA 83 (244)
Q Consensus 19 ~~~~~-lFg~k~~~ke~~r~~~~~lr~~~--------------r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~A 83 (244)
.+.++ ++.+-.+|...++...+.+...+ +.+++++..++....+...++..|+++|+-+.|+.++
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al 90 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL 90 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444 55545678877766666665554 4566667777777777788888999999999888877
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHH
Q 026014 84 RQLVRLRQQITNLQ-----------GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ---MKPAKQAKLIKEF 149 (244)
Q Consensus 84 k~lvr~rk~~~~l~-----------~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~---m~l~~i~~~M~ef 149 (244)
........+...|. .++.+|..+..+|.....-..+..+-..++++-..++.. +++......++.+
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~ 170 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERM 170 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 76665555443332 333444444555555555555555555555555555544 3455555555555
Q ss_pred HHHHHHhhhHHHHhhhh
Q 026014 150 QKQSAQMDMTIEMMSES 166 (244)
Q Consensus 150 ~ke~e~~~~~~e~m~d~ 166 (244)
+...+.+.-..+.+.+.
T Consensus 171 e~ki~~~ea~a~a~~el 187 (221)
T PF04012_consen 171 EEKIEEMEARAEASAEL 187 (221)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555555555443
No 23
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.20 E-value=0.0035 Score=51.41 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=88.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 45 ATRGVEREIAALQLEEKKLVAEIKKT---AKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSIST 121 (244)
Q Consensus 45 ~~r~Lere~~klek~ekkl~~~iKka---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~ 121 (244)
++..|...+..|++..+++..+|++. +++--..+-+..|+.+++.++.+.+ ...++.....+|+........+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k---~~~~~~~~~~~l~~~~~~ie~a~ 78 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEK---QLEKLLNQLSNLESVLLQIETAQ 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998864 3444445667888888888876544 45666777788888888888888
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHhhhHHHHhhhhhccccchhhh--HHHHHHHHHHHHHHhcchhhh
Q 026014 122 GMRGATKAMVAMNQQMKPAKQAKLIK--EFQKQSAQMDMTIEMMSESIDETLDKDEA--EEETEELTNQVLDEIGVDIAS 197 (244)
Q Consensus 122 am~~~~~~Mk~~n~~m~l~~i~~~M~--ef~ke~e~~~~~~e~m~d~~~~~~d~~~~--eeE~d~lv~qvldE~~~~~~~ 197 (244)
....+..+|+..++. +.++...|+ ++..-++.+....+.++. +++.+..... .+.-|+.++..++++.-+...
T Consensus 79 ~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~d~~~e~~e~~~e-i~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~ 155 (171)
T PF03357_consen 79 SNQQVVKALKQSSKA--LKKINKQINLDKVEKLMDDFQEEMEDQDE-ISEALSDSMDQVDDVDDEELEEELEQLEDEIEE 155 (171)
T ss_dssp HHHHHSSS----SHH--HHHHHHSTTSCCHHHHHHHHHHHHHHHTS-----------------TTSTTCHHHHHHHCCCT
T ss_pred HHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHccccCCCCCCHHHHHHHHHHHHHHHhh
Confidence 899999999988887 445555443 444444444333222221 2222222221 455566677777776554443
No 24
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.15 Score=42.43 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 33 EALRESKRDMATATRGVEREIAALQLEEKKLVAE-----IKKTAKTG---NEAATRILARQLVRLRQQITNLQGSRAQIR 104 (244)
Q Consensus 33 e~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~-----iKka~kkg---~~~~ari~Ak~lvr~rk~~~~l~~~~aql~ 104 (244)
--+|...|.|-+.-|.++++-++||.+-++.-.. ++-.+|+= .....|.|| ...++..+..|=-
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a--------~s~ki~s~~~QnK 89 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFA--------VSSKITSMSTQNK 89 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhh--------hhhhhhhhHHHHH
Confidence 3478888888888899999999998888877322 22222210 011123332 2233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHH
Q 026014 105 GVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELT 184 (244)
Q Consensus 105 sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv 184 (244)
.+.+++..+.+|..++..|+..++.|.----.-+.-.++..=.. .++. -.+|++.++|.|+..-|+++.++-|+.++
T Consensus 90 ~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmK--MemT-eEMiNDTLDdild~sgDeeEs~aiVNqVL 166 (208)
T KOG3231|consen 90 VMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMK--MEMT-EEMINDTLDDILDGSGDEEESQAIVNQVL 166 (208)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHH--hhhH-HHHHHhhHHHHhcCCCcHHHHHHHHHHHH
Confidence 56677777777777788888887777533222223333322111 1111 24678999999998888888899999999
Q ss_pred HHHHHHhcchhhhhcccC
Q 026014 185 NQVLDEIGVDIASQLSSA 202 (244)
Q Consensus 185 ~qvldE~~~~~~~~L~~a 202 (244)
+++-=|+..-+. ..|++
T Consensus 167 DEIGIEisgKma-~~P~a 183 (208)
T KOG3231|consen 167 DEIGIEISGKMA-KAPSA 183 (208)
T ss_pred HHhhhhhcchhc-cCCcc
Confidence 999999987665 45644
No 25
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=96.36 E-value=0.54 Score=40.01 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=91.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHH-------HH-HHHHHHHHHHHHHH
Q 026014 41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQ-QITN-------LQ-GSRAQIRGVATHTQ 111 (244)
Q Consensus 41 ~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk-~~~~-------l~-~~~aql~sv~~ql~ 111 (244)
.-.++|=.|.+++.+|-+..+++.+.+- .=|.+|+.+||... .... |+ .+-.|-+.--..|+
T Consensus 13 d~DrAIL~lK~QRdkl~qyqkR~e~~le---------~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlE 83 (209)
T KOG2910|consen 13 DQDRAILSLKTQRDKLKQYQKRLEKQLE---------AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLE 83 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888877776653 34678889998533 2222 22 23333333334467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH--HHHHHHHhhhHHHH---hhhhhccccchhhhHHHHHHHHHH
Q 026014 112 ALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKE--FQKQSAQMDMTIEM---MSESIDETLDKDEAEEETEELTNQ 186 (244)
Q Consensus 112 ~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~e--f~ke~e~~~~~~e~---m~d~~~~~~d~~~~eeE~d~lv~q 186 (244)
.+.+....+.--+.+..+++.-|.. +.+++..|+- ..+-|+.....-++ |+++++..+.. ++++++.++++.
T Consensus 84 qmvsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~Elda 160 (209)
T KOG2910|consen 84 QMVSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAELDA 160 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHH
Confidence 7788888888888899999999988 7778776654 77777666554444 55566666663 456677777766
Q ss_pred HHHH
Q 026014 187 VLDE 190 (244)
Q Consensus 187 vldE 190 (244)
+..|
T Consensus 161 Lese 164 (209)
T KOG2910|consen 161 LESE 164 (209)
T ss_pred HHHH
Confidence 6544
No 26
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.33 E-value=0.65 Score=40.63 Aligned_cols=128 Identities=16% Similarity=0.237 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---
Q 026014 29 TTPKEALRESKRDMAT--------------ATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQ--- 91 (244)
Q Consensus 29 ~~~ke~~r~~~~~lr~--------------~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk--- 91 (244)
.+|+..+....++... ..+.++++...+.....+++.+...|+.+||-+-|+-.+...-..-+
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~ 102 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAK 102 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788766555544433 45778889999999999999999999999997766544332222111
Q ss_pred ----H----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhH
Q 026014 92 ----Q----ITNLQGSRAQIRGVATHTQALYAST---SISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMT 159 (244)
Q Consensus 92 ----~----~~~l~~~~aql~sv~~ql~~a~~~~---~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~ 159 (244)
+ .....+++.++..+..+|....+-. ....+...++..|..+...++. ...|..|++--++....
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kiee~ 178 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIEER 178 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHHHH
Confidence 1 1113344445555555554444433 3344455555555555556666 45555555554444433
No 27
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=95.67 E-value=0.1 Score=43.41 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=93.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 40 RDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 119 (244)
Q Consensus 40 ~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~ 119 (244)
..|+-++..|.-..++.....++...+|-..++.|+.+.||+-+..+|+-.+...-|.-+.--.+-+..++.........
T Consensus 2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~ 81 (165)
T PF03398_consen 2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC 81 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 45666777777778888888889999999999999999999999999999998888887777777777776655544333
Q ss_pred HHHHHHHHHHHHHH-HhhCCHHHHHHHHHH----HHHHHHHh------hhHHHHhhhhhccccchhhhHHHHHHHHHHHH
Q 026014 120 STGMRGATKAMVAM-NQQMKPAKQAKLIKE----FQKQSAQM------DMTIEMMSESIDETLDKDEAEEETEELTNQVL 188 (244)
Q Consensus 120 ~~am~~~~~~Mk~~-n~~m~l~~i~~~M~e----f~ke~e~~------~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvl 188 (244)
-..++.+...+=-+ .+.-++|.+..+=.- |-++|... +.++.-+-.-+.... -.++.++..+.+|+
T Consensus 82 p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~---p~~~~v~~~L~eIA 158 (165)
T PF03398_consen 82 PPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKP---PSEELVEKYLKEIA 158 (165)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S------CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCC---cCHHHHHHHHHHHH
Confidence 33333333333233 333466666543322 34444221 111111111122110 12457888888888
Q ss_pred HHhcch
Q 026014 189 DEIGVD 194 (244)
Q Consensus 189 dE~~~~ 194 (244)
.++|++
T Consensus 159 ~e~~i~ 164 (165)
T PF03398_consen 159 KEYGIP 164 (165)
T ss_dssp HHCT-S
T ss_pred HHcCCC
Confidence 888865
No 28
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=1.9 Score=36.90 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 42 MATATRGVEREIAALQLEEKKLVAEIKKT---AKTGNEAATRIL-ARQLVRLRQQITNLQGSRAQIRGVATHTQALYAST 117 (244)
Q Consensus 42 lr~~~r~Lere~~klek~ekkl~~~iKka---~kkg~~~~ari~-Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~ 117 (244)
|.-.+-.++.-...++..-.+|..++.+. +++=...-++-. =+.++|.=|+...|...+-+|++-++-+..+.-+.
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44455566666666666666666655543 333333333332 22355555666666666666666666665554444
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 026014 118 SISTGMRGATKAMVAMNQQM 137 (244)
Q Consensus 118 ~~~~am~~~~~~Mk~~n~~m 137 (244)
+-.+--.....+|+..|+.|
T Consensus 97 e~LKdtq~Tv~AmK~~~k~m 116 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEM 116 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334455666666554
No 29
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.16 E-value=17 Score=34.77 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=90.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 39 KRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGN---EAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYA 115 (244)
Q Consensus 39 ~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~---~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~ 115 (244)
...+.-.+-.|-+-..+|.++-..+..+|+++-.+-+ .++-|..|...+|.|+...+ -..++.+...+|++..+
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK---~~er~~~~l~~l~~vl~ 304 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEK---DLERKVSSLNNLETVLS 304 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888887755433 34567788888888886554 22344444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhh--hccccchhh--hHHHHHHHHHHHHHHh
Q 026014 116 STSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSES--IDETLDKDE--AEEETEELTNQVLDEI 191 (244)
Q Consensus 116 ~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~--~~~~~d~~~--~eeE~d~lv~qvldE~ 191 (244)
+..-+..=+-+-.+++.-+..++.-.. .+-..++--+-++.+.+.++.. +++.+.... ..+.-|+.+++-|+++
T Consensus 305 ~Id~s~~nkvvl~AyksGs~alK~il~--~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L 382 (439)
T KOG2911|consen 305 QIDNSQTNKVVLQAYKSGSEALKAILA--QGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDL 382 (439)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHHHh--ccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHH
Confidence 555555566677777777766433322 2333444444444444444331 122221111 2366777888888887
Q ss_pred cchh
Q 026014 192 GVDI 195 (244)
Q Consensus 192 ~~~~ 195 (244)
..|.
T Consensus 383 ~~D~ 386 (439)
T KOG2911|consen 383 EADE 386 (439)
T ss_pred Hhcc
Confidence 6444
No 30
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=82.48 E-value=27 Score=29.09 Aligned_cols=50 Identities=6% Similarity=-0.021 Sum_probs=33.2
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTA 71 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~ 71 (244)
+++|+|+|.....+.+=+..+...+..-++.....+......+.++..+-
T Consensus 43 L~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~ 92 (184)
T PRK13455 43 LVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQ 92 (184)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677765557778777777777777777666666666666666555543
No 31
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.87 E-value=19 Score=26.93 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026014 89 LRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ 136 (244)
Q Consensus 89 ~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~ 136 (244)
+++...+|-+...|+.+|..-|+.-.-...+...+..+..++..+...
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~ 55 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE 55 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888999999999999988888888888888888888777654
No 32
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=76.64 E-value=74 Score=30.59 Aligned_cols=141 Identities=10% Similarity=0.105 Sum_probs=68.9
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKT-------GNEAATRILARQLVRLRQQIT 94 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kk-------g~~~~ari~Ak~lvr~rk~~~ 94 (244)
+++|.|+| ....+.+=+..|...+.+.+.-...++....+.+..+..+-.. ...++.+++.+-+-..++...
T Consensus 18 L~kfl~~P-i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~ 96 (445)
T PRK13428 18 VWRFVVPP-VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAE 96 (445)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666653 4556666666666666666655555555555544444443332 222222222222333333343
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q 026014 95 NLQ-GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMK-PAKQAKLIKEFQKQSAQMDMTIEMMSES 166 (244)
Q Consensus 95 ~l~-~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~-l~~i~~~M~ef~ke~e~~~~~~e~m~d~ 166 (244)
++. ....++..-..+........-..-++..+.+.++ +.++ ...-.+++++|-+++..+.-....++.+
T Consensus 97 ~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~---~~l~d~~~~~~lId~~i~~l~~~~~~~~~~~~~ 167 (445)
T PRK13428 97 RIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVR---NHVADPAQQSATVDRFLDELDAMAPSTADVDYP 167 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHhhccCCCchhhcCc
Confidence 333 3333333333332222222222334454444443 3453 3444688999998888876655555544
No 33
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=76.47 E-value=27 Score=25.58 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026014 89 LRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ 136 (244)
Q Consensus 89 ~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~ 136 (244)
+++-..+|.+...|+.+|..=++.-.....+...+..+-.+|..+...
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~ 51 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999988888888888888888888888877765
No 34
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=73.28 E-value=36 Score=25.47 Aligned_cols=48 Identities=4% Similarity=0.030 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026014 89 LRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ 136 (244)
Q Consensus 89 ~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~ 136 (244)
+++...+|-+...|+.+|..=++.-.....+...+..+-.++..+...
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~ 55 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMRE 55 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999988888777888888888777777766655
No 35
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=70.99 E-value=58 Score=26.85 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 21 TMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 21 ~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
++++|.|+| ....+.+-+..+...+...+......+......+.++..+
T Consensus 35 lL~~fl~kp-I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a 83 (174)
T PRK07352 35 LLYYFGRGF-LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQA 83 (174)
T ss_pred HHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677664 4455555555555555555544444444444444444443
No 36
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=67.25 E-value=87 Score=27.41 Aligned_cols=134 Identities=10% Similarity=0.131 Sum_probs=63.2
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKT-------GNEAATRILARQLVRLRQQIT 94 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kk-------g~~~~ari~Ak~lvr~rk~~~ 94 (244)
+++|.|+| ....+.+=+..+.......++.....+......+.++..+-+. ...++.+....-+-.-+.+..
T Consensus 22 L~kfl~kP-i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~ 100 (246)
T TIGR03321 22 LKRFLYRP-ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEAD 100 (246)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666653 4455555555555555555555555555555444444443221 111222222222223333333
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhH
Q 026014 95 NLQ-GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMT 159 (244)
Q Consensus 95 ~l~-~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~ 159 (244)
++. .....+..=..+........-+.-++..+.+.++ +.+|...-..++++|-..+..+..-
T Consensus 101 ~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~---~~~d~~~~~~lid~~i~~l~~l~~~ 163 (246)
T TIGR03321 101 EIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLT---DLADTDLEERMVDVFVQRLRTLDPD 163 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHhhcCCHH
Confidence 332 2222222222221112222223345555555554 5567777789999999888877443
No 37
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=67.17 E-value=48 Score=25.70 Aligned_cols=56 Identities=7% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 15 MKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 15 ~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
|+.+..++.++.....+...++++...+...+..|+.++..++.....+...+..+
T Consensus 58 L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 58 LEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666654433344555667777788888888888888888887777777654
No 38
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=65.84 E-value=86 Score=26.83 Aligned_cols=49 Identities=8% Similarity=-0.075 Sum_probs=23.8
Q ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 21 TMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 21 ~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
++++|.|+| ....+.+-+..+...+...+......+......+.++..+
T Consensus 64 lL~k~l~kP-i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 64 LGIFLFWKP-TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666653 3445555445555555555444444444444444444433
No 39
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.20 E-value=29 Score=27.19 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHcCCC--CCh----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 026014 20 KTMNIFRKK--TTP----KEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNE 76 (244)
Q Consensus 20 ~~~~lFg~k--~~~----ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~ 76 (244)
.+|..+|.= +.| +.-+.+-.--+...+..|+++...+++.-+.+...++.++..|..
T Consensus 55 ~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 55 PIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred hhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666641 122 233445555566777777777777777777777777777777654
No 40
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=61.06 E-value=82 Score=24.99 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHH
Q 026014 12 ERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAA 55 (244)
Q Consensus 12 ~~~~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~k 55 (244)
+|--.+...|.++|...+ ..+.+|.+.+.|..+...|..+-.+
T Consensus 45 e~I~~aV~~m~~LfP~~~-~~e~vr~~L~~L~~~~~~Lq~eC~~ 87 (123)
T PF12205_consen 45 ERIRSAVTEMAALFPKDP-RSETVRSSLRQLTSSAYRLQAECQK 87 (123)
T ss_dssp HHHHHHHHHHHHTS-SSB---HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCcc-CChHHHHHHHHHHHHHHHHHHHhcc
Confidence 555667788999997653 4567777766666666555444433
No 41
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=58.68 E-value=1e+02 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=19.6
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEI 67 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~i 67 (244)
+++|.|+| ....+.+=+..+...+...+.-....+......+.++
T Consensus 33 L~~~~~kp-i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 77 (173)
T PRK13460 33 LKKFAWDV-ILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77 (173)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566642 3444444444444444444443333333333333333
No 42
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.43 E-value=1.3e+02 Score=26.52 Aligned_cols=134 Identities=10% Similarity=0.096 Sum_probs=63.4
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK-------TGNEAATRILARQLVRLRQQIT 94 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k-------kg~~~~ari~Ak~lvr~rk~~~ 94 (244)
++.|.|+| ....+.+=+..+.......+.-....+......+.++..+-+ ....++.+...+-+-.-|.+..
T Consensus 22 L~~fl~kP-i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~ 100 (250)
T PRK14474 22 LRRFLYKP-IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVA 100 (250)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666653 345555555555555555555555554444444444443322 2222222333333333344444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhH
Q 026014 95 NLQ-GSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMT 159 (244)
Q Consensus 95 ~l~-~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~ 159 (244)
++. .....+..=..+........-..-++..+.++++ +.+|...-..+++.|-..+..++.-
T Consensus 101 ~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~---~~~d~~~~~~lid~~i~~l~~l~~~ 163 (250)
T PRK14474 101 TARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALA---DLANATLEQQIVGIFIARLEHLSEA 163 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHhcccCHH
Confidence 333 2222222222221122222222334555555554 4557777789999999888888544
No 43
>PRK11352 regulator protein FrmR; Provisional
Probab=56.60 E-value=81 Score=23.55 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026014 89 LRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ 136 (244)
Q Consensus 89 ~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~ 136 (244)
+++-..+|.+...|+.+|..-|+.-.....+...+..+..++..+...
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~ 55 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAE 55 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888999999999999988888888888888888887766644
No 44
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=55.16 E-value=1e+02 Score=24.33 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=26.3
Q ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 21 TMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 21 ~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
++++|.|+ +....+.+=+..+...+...+......+......+..+..+
T Consensus 11 il~~~~~~-pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A 59 (147)
T TIGR01144 11 FCMKYVWP-PLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEA 59 (147)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665 34555655555556665555555555555544444444443
No 45
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=51.86 E-value=1.2e+02 Score=24.15 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK 72 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k 72 (244)
++.|.++ +....+.+-+..+...+...+......+......+.++..+-.
T Consensus 21 l~~~~~~-pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ 70 (156)
T PRK05759 21 IMKFVWP-PIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARA 70 (156)
T ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456554 3455566666666666666666666666666655555555433
No 46
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=51.39 E-value=1.3e+02 Score=24.29 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
+++|.|+ +....+.+=+..+...+...+......+......+.++..+
T Consensus 22 L~~f~~k-pi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a 69 (159)
T PRK13461 22 LKHFFFD-KIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNA 69 (159)
T ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466665 34555666555566666665555555555555555555444
No 47
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=50.78 E-value=1.1e+02 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 026014 65 AEIKKTAKTGNEAATRILARQLVRLRQQITNLQ 97 (244)
Q Consensus 65 ~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~ 97 (244)
..+..++..|+.+.|+..++.+--.|+.+-+.+
T Consensus 70 d~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 70 DKAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 345678899999999999999999999887654
No 48
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=50.43 E-value=1.4e+02 Score=24.51 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=25.5
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
+++|.|+ +....+.+=+..+.......+......+......+.++..+
T Consensus 35 L~~~l~k-pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a 82 (175)
T PRK14472 35 LKKIAWG-PILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKA 82 (175)
T ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456654 34555555555556666555555555555555555444444
No 49
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.82 E-value=1.7e+02 Score=24.22 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK 72 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k 72 (244)
+.+|+|+| ....+.+-+..+.......++.....+......+.++..+-+
T Consensus 41 L~~fl~kP-I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ 90 (184)
T CHL00019 41 LIYFGKGV-LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAEL 90 (184)
T ss_pred HHHHhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777763 455666666666666666666666665555555555554433
No 50
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=45.74 E-value=1.6e+02 Score=23.82 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=26.2
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
+++|.|+ +....+.+=+..+...+...+......+......+..+..+
T Consensus 25 L~~fl~k-pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A 72 (164)
T PRK14473 25 LRTFLYR-PVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKA 72 (164)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466665 24555555555556666555555555555555555555444
No 51
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=45.34 E-value=2.8e+02 Score=26.39 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 026014 57 QLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGAT-KAMVAMNQ 135 (244)
Q Consensus 57 ek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~-~~Mk~~n~ 135 (244)
+..-+++..+|-..++.|..+.|++-+..+||--+...-|.-+--=.+-|..++.....+...-..++.+. ..|=.+-+
T Consensus 14 ~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifAA~R 93 (388)
T KOG2027|consen 14 EALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFAAPR 93 (388)
T ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHHhcc
Confidence 44567788889999999999999999999999999888777666666667777766666655555554433 33444444
Q ss_pred hCCHHHHHHHHHHHHH----HHHHh--------hhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcchhh
Q 026014 136 QMKPAKQAKLIKEFQK----QSAQM--------DMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIA 196 (244)
Q Consensus 136 ~m~l~~i~~~M~ef~k----e~e~~--------~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~~~~ 196 (244)
.-+++.+..+=+-|-. +|... ++...+|.. |.... -+.+-+..++-+|+.++++...
T Consensus 94 ~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiek-Ls~~~---P~~e~k~k~lkEIA~ey~v~~~ 162 (388)
T KOG2027|consen 94 LSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEK-LSVEA---PPKELKEKYLKEIAKEYNVNWE 162 (388)
T ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHH-hcCCC---CcHHHHHHHHHHHHHHhCCCcc
Confidence 4568888766555443 33222 122222222 11100 1233468888899999886653
No 52
>PRK09720 cybC cytochrome b562; Provisional
Probab=45.03 E-value=1.4e+02 Score=22.87 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 026014 68 KKTAKTGNEAATRILARQLVRLRQQITNLQ 97 (244)
Q Consensus 68 Kka~kkg~~~~ari~Ak~lvr~rk~~~~l~ 97 (244)
...+..|+.+.|+..|+++...|+++-+-|
T Consensus 70 ~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 70 LKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999886644
No 53
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=44.50 E-value=1.4e+02 Score=23.91 Aligned_cols=31 Identities=19% Similarity=0.485 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 026014 38 SKRDMATATRGVEREIAALQLEEKKLVAEIK 68 (244)
Q Consensus 38 ~~~~lr~~~r~Lere~~klek~ekkl~~~iK 68 (244)
....+...+..+|++...|+.+.++...+++
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888999999999888887766644
No 54
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=42.84 E-value=1.7e+02 Score=23.33 Aligned_cols=82 Identities=10% Similarity=0.249 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 48 GVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGAT 127 (244)
Q Consensus 48 ~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~ 127 (244)
-|..-...+-.++..+-+.||.. +...++++. ++...++...+|..--.+++.+..+|...+. .+..+.
T Consensus 39 HL~~cA~~Va~~Q~~L~~riKev----d~~~~~l~~-~~~erqk~~~k~ae~L~kv~els~~L~~~~~------lL~~~v 107 (131)
T PF10158_consen 39 HLNQCAEAVAFDQNALAKRIKEV----DQEIAKLLQ-QMVERQKRFAKFAEQLEKVNELSQQLSRCQS------LLNQTV 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 34444444455555555555543 344566553 4455555566666666677777777766544 677777
Q ss_pred HHHHHHHhhCCHH
Q 026014 128 KAMVAMNQQMKPA 140 (244)
Q Consensus 128 ~~Mk~~n~~m~l~ 140 (244)
..|..+|..+..+
T Consensus 108 ~~ie~LN~~LP~~ 120 (131)
T PF10158_consen 108 PSIETLNEILPEE 120 (131)
T ss_pred HHHHHHHhhCChh
Confidence 7888888776543
No 55
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=41.96 E-value=1.9e+02 Score=23.45 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
++.|.|+| ....+.+-+..+.......++.....+......+..+..+
T Consensus 25 l~~~l~~p-i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A 72 (164)
T PRK14471 25 LAKFAWKP-ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEA 72 (164)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455542 4555665555566666555555555555555555544443
No 56
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=41.25 E-value=3.2e+02 Score=26.01 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 38 SKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTG-NEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQA 112 (244)
Q Consensus 38 ~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg-~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~ 112 (244)
....+...-|++..++..|..+.+.+-++|++..+.+ +.+..+. +.+.-..++..+..++..+..++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIA------EVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777888888889999999999999998866655 3332222 2222233344455555555555433
No 57
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=41.05 E-value=1.3e+02 Score=26.51 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=47.6
Q ss_pred HHHHHHHHH-HHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 10 ARERTMKIL-KKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK 72 (244)
Q Consensus 10 ~~~~~~~~m-~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k 72 (244)
|+.|-..++ .++=.||.-++...+..|...-.|++.+.........|++..+.+..-|.++-.
T Consensus 1 A~~RI~eILPqRIQEw~~~p~~A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 1 ATNRIYEILPQRIQEWQLSPCVAEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred CchHHHHHChHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777 555567776666677777777788888888888888888888888888776543
No 58
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=39.39 E-value=73 Score=20.86 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 026014 30 TPKEALRESKRDMATATRGVEREIAALQLEEKKLVA 65 (244)
Q Consensus 30 ~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~ 65 (244)
..|+.+++.--.+-..+..|+.+|..|+.....|..
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 357778887778888888999999888877655543
No 59
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=39.29 E-value=2.2e+02 Score=23.45 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 22 MNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 22 ~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
++.|.|+ +....+.+=+..+...+...+......+......+.++..+
T Consensus 35 L~~~l~~-pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 82 (173)
T PRK13453 35 LKKFAWG-PLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKET 82 (173)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355553 34555555555555555555555555555555555544444
No 60
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=38.87 E-value=72 Score=24.32 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 026014 66 EIKKTAKTGNEAATRILARQLVRLRQQITN 95 (244)
Q Consensus 66 ~iKka~kkg~~~~ari~Ak~lvr~rk~~~~ 95 (244)
++.+.+..||.+.|+.-|+.+.-.|+.+-+
T Consensus 68 ~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 68 KADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999998754
No 61
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=36.60 E-value=1.3e+02 Score=20.07 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026014 14 TMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLV 64 (244)
Q Consensus 14 ~~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~ 64 (244)
+|+-+..++.++.. +.....++...+.....++++++..++.-...+.
T Consensus 16 sL~eI~~~l~l~~~---~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 16 SLEEIRELLELYDQ---GDPPCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp -HHHHHHHHHHCCS---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777776553 3333455556777888888888888887766554
No 62
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=35.47 E-value=2.5e+02 Score=25.99 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=29.5
Q ss_pred HcCCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-cC----CHHHHHHHHHHHHHH
Q 026014 24 IFRKK-TTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK-TG----NEAATRILARQLVRL 89 (244)
Q Consensus 24 lFg~k-~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k-kg----~~~~ari~Ak~lvr~ 89 (244)
|||++ .+|.|.+|..+-.|.+-...-+....+...+-.+.-.++|..+- .+ +.+.+-.+|.++.+.
T Consensus 4 lF~k~~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 4 LFKKKPKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp --------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 78864 58999888655433322111134444444444555555565544 22 233456677777754
No 63
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=32.61 E-value=2.5e+02 Score=22.98 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026014 13 RTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKT 73 (244)
Q Consensus 13 ~~~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kk 73 (244)
+.+..+.+-+..|-++.+.+ -+.+........++.+..+...++++-..++...+.+..+
T Consensus 23 ~kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k 82 (151)
T PF14584_consen 23 IKLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQK 82 (151)
T ss_pred HHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 45666777777443333333 2333334455666777777777777777777777776653
No 64
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=31.76 E-value=2e+02 Score=20.79 Aligned_cols=71 Identities=13% Similarity=0.301 Sum_probs=35.2
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHH
Q 026014 19 KKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTG-NEAATRILARQLVRLRQQITNLQ 97 (244)
Q Consensus 19 ~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg-~~~~ari~Ak~lvr~rk~~~~l~ 97 (244)
++++++|.. +=+.+......++.....|--.+.++..+ +. .+.....-. .++.+. |+.-+++.|+....+.
T Consensus 6 ~Gl~~~l~P---~l~~~~~~l~el~~sQ~~L~~~i~~~~~~---L~-~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~ 77 (92)
T PF14712_consen 6 EGLLSLLEP---DLDRLDQQLQELRQSQEELLQQIDRLNEK---LK-ELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLH 77 (92)
T ss_pred HHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHH
Confidence 467777762 44555666666666666664444333322 11 111111111 134455 7777777776554443
No 65
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=30.02 E-value=2.3e+02 Score=21.05 Aligned_cols=67 Identities=16% Similarity=0.316 Sum_probs=43.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 40 RDMATATRGVEREIAALQLEEKKLVAEIKKTAKTG-NEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQA 112 (244)
Q Consensus 40 ~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg-~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~ 112 (244)
..+...-|.+..++..+..+.+.+-.+|.++.+.| +.+..+.- .+.-...+..+..++..+..++..
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e------~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAE------VKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888888999999999999999999987 44333322 222233344455555555555443
No 66
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=29.00 E-value=2.8e+02 Score=27.93 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH-------HHHHHH-HhhhHHHHhh
Q 026014 98 GSRAQIRGVATHTQALYA-----STSISTGMRGATKAMVAMNQQMKPAKQAKLIKE-------FQKQSA-QMDMTIEMMS 164 (244)
Q Consensus 98 ~~~aql~sv~~ql~~a~~-----~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~e-------f~ke~e-~~~~~~e~m~ 164 (244)
.+.++|+.|..+.+--.- .....++|..++.+...++.. +.||+.+.+. +-.|.. +.+-|+..|.
T Consensus 231 ~vQ~RlN~val~t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~A--l~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~ 308 (610)
T PF01601_consen 231 AVQARLNYVALQTDVLQENQKIIANSFNKAIGNIQLGFTTTASA--LNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQ 308 (610)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHhcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344566665554322111 112334455555555555555 5555544433 333333 3477777777
Q ss_pred hhhccccchhhhHHHHHHHHH
Q 026014 165 ESIDETLDKDEAEEETEELTN 185 (244)
Q Consensus 165 d~~~~~~d~~~~eeE~d~lv~ 185 (244)
|.... +|.-+.+.++|.||.
T Consensus 309 dIy~R-Ld~leAdaQVDRLIt 328 (610)
T PF01601_consen 309 DIYNR-LDQLEADAQVDRLIT 328 (610)
T ss_dssp HHHHH-HHHHHHH--------
T ss_pred HHHHH-HHHHhhccccccccc
Confidence 76554 454455666666654
No 67
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.44 E-value=2.1e+02 Score=21.74 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=14.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026014 39 KRDMATATRGVEREIAALQLEEKKLV 64 (244)
Q Consensus 39 ~~~lr~~~r~Lere~~klek~ekkl~ 64 (244)
...+......|+.++..++.....+.
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (112)
T cd01282 83 LAVLRRELARIDRQIADLTRSRDRLD 108 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666655554443
No 68
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.16 E-value=5.5e+02 Score=24.39 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 36 RESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQA 112 (244)
Q Consensus 36 r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~ 112 (244)
-+....+...-|++..++..|..+.+.+-.+|+...+.++..... -..+.+.-..++..+..++..+..++..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~----l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEE----IKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888889999999999999998866555311111 1112333334455555555555555443
No 69
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.06 E-value=2.8e+02 Score=23.32 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026014 31 PKEALRESKRDMATATRGVEREIAALQLEEKK 62 (244)
Q Consensus 31 ~ke~~r~~~~~lr~~~r~Lere~~klek~ekk 62 (244)
...++....++|..++++|++++.+++.-..+
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~ 145 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSK 145 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544433
No 70
>PLN03086 PRLI-interacting factor K; Provisional
Probab=26.47 E-value=6.2e+02 Score=25.40 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 49 VEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 119 (244)
Q Consensus 49 Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~ 119 (244)
|.+-+.+++++.++=+.+.|.-+.+- |..-.++.+.|-.+....+ .-+|++++.++.....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 69 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLERE-----RKAKEEAAKQREAIEAAQR-SRRLDAIEAQIKADQQMQES 69 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444332221 1111233344444444433 34777777777655444443
No 71
>PRK15058 cytochrome b562; Provisional
Probab=25.74 E-value=1.5e+02 Score=23.64 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHH--------------HHHHHHHHHHHHHHHHH---HHHHcC
Q 026014 12 ERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVER--------------EIAALQLEEKKLVAEIK---KTAKTG 74 (244)
Q Consensus 12 ~~~~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Ler--------------e~~klek~ekkl~~~iK---ka~kkg 74 (244)
+-.|..|..=|+.|..-.++.+ +...-..+|...-+-.+ +.+.-+.--.++..+|. ..+..|
T Consensus 26 ~~~M~~m~~~~k~~~~A~~a~~-~k~al~~mr~aa~~Ak~~~P~kl~~k~~ds~e~K~Y~~G~d~Li~qID~a~~la~~G 104 (128)
T PRK15058 26 EDNMETLNDNLKVVEKTDNAAE-VKDALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEG 104 (128)
T ss_pred HHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHhccCCchhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456777777777776544443 33333333333222111 11111111233444444 457799
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 026014 75 NEAATRILARQLVRLRQQITNLQ 97 (244)
Q Consensus 75 ~~~~ari~Ak~lvr~rk~~~~l~ 97 (244)
+.+.||..++++...|+++-+-|
T Consensus 105 kL~eAK~~a~~l~~lR~eYHkky 127 (128)
T PRK15058 105 KVKEAQAAAEQLKTTRNAYHKKY 127 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999886543
No 72
>PF08165 FerA: FerA (NUC095) domain; InterPro: IPR012560 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain A in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=24.82 E-value=1.8e+02 Score=20.32 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhccc
Q 026014 176 AEEETEELTNQVLDEIGVDIASQLSS 201 (244)
Q Consensus 176 ~eeE~d~lv~qvldE~~~~~~~~L~~ 201 (244)
+++++.++.-+++|++--|.+..||.
T Consensus 8 ~~~~l~~~~~~lLdqlIeD~~~pLP~ 33 (66)
T PF08165_consen 8 SEEELAELWLKLLDQLIEDCSKPLPS 33 (66)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 56788999999999988888777764
No 73
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=24.32 E-value=33 Score=26.69 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=22.1
Q ss_pred HHHHHHH-HHHHH-HcCCCCChHHHHHHHHHHHHHHHhhH
Q 026014 12 ERTMKIL-KKTMN-IFRKKTTPKEALRESKRDMATATRGV 49 (244)
Q Consensus 12 ~~~~~~m-~~~~~-lFg~k~~~ke~~r~~~~~lr~~~r~L 49 (244)
|+.|+.. +++|+ .|+....|-|..+..+|.+....+.+
T Consensus 5 E~~lE~~v~g~Far~F~~~vqPvEIa~~L~remd~~a~~~ 44 (116)
T PF12401_consen 5 ERRLERAVEGAFARVFRSEVQPVEIAKALRREMDDQARVV 44 (116)
T ss_dssp ----SS--STHHHHHHTTSS-THHHHHHHHHHHHHT-B--
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhCCeec
Confidence 3444443 56777 78888889999998887776665444
No 74
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=24.26 E-value=2.5e+02 Score=19.37 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Q 026014 56 LQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNL 96 (244)
Q Consensus 56 lek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l 96 (244)
|+...++.+.-...|-..||.+.||.| +|.=|++...
T Consensus 4 L~~R~~~yk~Aa~~AK~~gd~~kAr~~----~R~~K~~~~~ 40 (59)
T smart00685 4 LQQRQEQYKQAALQAKRAGDEEKARRH----LRIAKQFDDA 40 (59)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHhhHHHH
Confidence 566667777777888889999988877 5544544443
No 75
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.91 E-value=6.9e+02 Score=24.44 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 35 LRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK 72 (244)
Q Consensus 35 ~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k 72 (244)
+++..|.|--..|++++++..+..+-+.++.+-...-+
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777777766665443
No 76
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.78 E-value=2.9e+02 Score=21.84 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 33 EALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK 72 (244)
Q Consensus 33 e~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k 72 (244)
+.+.+-.-.|...++.|+++..+++.+-+.++..|.++..
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444455555555555555555555555554443
No 77
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.50 E-value=1.4e+02 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhhhccc
Q 026014 140 AKQAKLIKEFQKQSAQMDMTIEMMSESIDET 170 (244)
Q Consensus 140 ~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~ 170 (244)
..+.+-|.++...++.+..+.+.+.+ ++.+
T Consensus 8 ~eL~D~~~~L~~n~~~L~~ihesL~~-FNES 37 (58)
T PF08653_consen 8 AELSDSMETLDKNMEQLNQIHESLSD-FNES 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45566777777777777777777776 4433
No 78
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.40 E-value=6.2e+02 Score=23.74 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 11 RERTMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTA 71 (244)
Q Consensus 11 ~~~~~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~ 71 (244)
|.|.=+.|++...+-..=...+|-++.-+.+|+.....||++...+++.-.-+..++..++
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4455555655555322212466778888888888888888888888888888888887743
No 79
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.90 E-value=2.6e+02 Score=19.18 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026014 41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILAR 84 (244)
Q Consensus 41 ~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak 84 (244)
.++..+..|++++..+..+-..++.+++..- ++.+...-+|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~--~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLK--NDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 4556666777777777777777766666542 24444444444
No 80
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.69 E-value=5.3e+02 Score=22.26 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 026014 42 MATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQ-LVRLRQQITNLQGSRAQIRGVATHTQALYAST-SI 119 (244)
Q Consensus 42 lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~-lvr~rk~~~~l~~~~aql~sv~~ql~~a~~~~-~~ 119 (244)
+......+++....+-+.-.+.+.-|-...+ |-+..+-.+.+ .-|.++...+|..++++.. .+|+.|+... .+
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~--NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v 155 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKK--NEETLKKCIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQV 155 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444445555555555544444444333222 23333333332 4455556666666665544 2333322211 12
Q ss_pred HHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHhh
Q 026014 120 STGMRGATKAMVAMNQ--QMKPAKQAKLIKEFQKQSAQMD 157 (244)
Q Consensus 120 ~~am~~~~~~Mk~~n~--~m~l~~i~~~M~ef~ke~e~~~ 157 (244)
-..-..=..++....+ .|.+..+...+..-.++++.+-
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 3567777777777777776663
No 81
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.54 E-value=4.2e+02 Score=21.03 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 026014 35 LRESKRDMATATRGVEREIAALQLEEKKL 63 (244)
Q Consensus 35 ~r~~~~~lr~~~r~Lere~~klek~ekkl 63 (244)
+......+...++.|+..+..+..-...+
T Consensus 79 ~~~~~~~l~~~i~~Le~~l~~L~~~~~~l 107 (134)
T cd04779 79 VAQEVQLVCDQIDGLEHRLKQLKPIASQT 107 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555544444444
No 82
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.43 E-value=1.2e+02 Score=16.99 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHHHHHH
Q 026014 41 DMATATRGVEREIAALQ 57 (244)
Q Consensus 41 ~lr~~~r~Lere~~kle 57 (244)
.+|..|+.|+++...|-
T Consensus 5 rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 5 RLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46677778887777663
No 83
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.41 E-value=6e+02 Score=22.85 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 32 KEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAK 72 (244)
Q Consensus 32 ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~k 72 (244)
...++.+...+...+.++.+.+..+...++.+..+|++--.
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ 204 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQ 204 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888999999999999999999999976433
No 84
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.05 E-value=7.6e+02 Score=23.84 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 026014 38 SKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLR-QQITNLQGSRAQIRGVATHTQ 111 (244)
Q Consensus 38 ~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~r-k~~~~l~~~~aql~sv~~ql~ 111 (244)
-...|....|.+-++...|..+.+.+-.+|.++.++|.. ++..++..- .-..++..+...++.+...++
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-----~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-----DAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345677777888888888888888888889877777653 333344332 222334444555555544443
No 85
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=20.97 E-value=4.2e+02 Score=20.80 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026014 19 KKTMNIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKK 62 (244)
Q Consensus 19 ~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekk 62 (244)
..+|.+||. .=.++-+.+++...++.+.=|+.++++++..-+.
T Consensus 52 ~~VYKliGp-vLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d 94 (120)
T KOG3478|consen 52 SNVYKLIGP-VLVKQELEEARTNVGKRLEFISKEIKRLENQIRD 94 (120)
T ss_pred chHHHHhcc-hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888883 3456777888888888777777777777655433
No 86
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.59 E-value=1.7e+02 Score=19.78 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=11.3
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 026014 42 MATATRGVEREIAALQLEEK 61 (244)
Q Consensus 42 lr~~~r~Lere~~klek~ek 61 (244)
++.+.|.+.+++++++++-.
T Consensus 46 ~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655543
No 87
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=20.58 E-value=4.5e+02 Score=21.08 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=20.8
Q ss_pred HHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHHhcch
Q 026014 151 KQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVD 194 (244)
Q Consensus 151 ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE~~~~ 194 (244)
++.....++++++= ..++ ++|++..|.+++.++|..
T Consensus 75 ~e~~Ei~iL~~yLP----~~ls----eeEi~~~v~~~i~e~ga~ 110 (143)
T PF09424_consen 75 KEQAEIEILEEYLP----KQLS----EEEIEAIVEEAIAELGAS 110 (143)
T ss_dssp HHHHHHHHHGGGS-------------HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhCc----CCCC----HHHHHHHHHHHHHHhCCC
Confidence 34444555555543 3333 678999999999998744
No 88
>PRK07857 hypothetical protein; Provisional
Probab=20.49 E-value=3.9e+02 Score=20.61 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=30.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026014 39 KRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGN 75 (244)
Q Consensus 39 ~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~ 75 (244)
...+|..|.+||+++-+|=.+--.+-.+|-+..+..+
T Consensus 30 L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g 66 (106)
T PRK07857 30 IDELREEIDRLDAEILALVKRRTEVSQAIGKARMASG 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3458899999999999999988888888877766554
No 89
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.18 E-value=4.8e+02 Score=21.19 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026014 32 KEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKT 70 (244)
Q Consensus 32 ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka 70 (244)
...+.+=+..+...+...++-....+......+.++..+
T Consensus 36 ~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A 74 (167)
T PRK14475 36 AGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEA 74 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666655555555555555555544
Done!