Query 026014
Match_columns 244
No_of_seqs 151 out of 744
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 2.6E-51 8.8E-56 352.3 12.2 211 28-243 5-218 (218)
2 2gd5_A Charged multivesicular 100.0 2.3E-44 7.9E-49 301.8 5.4 179 23-205 1-179 (179)
3 3eab_G CHMP1B; spastin, MIT, E 98.9 6.9E-11 2.4E-15 78.4 -2.0 49 180-243 2-50 (50)
4 3um3_B Charged multivesicular 98.8 2.2E-08 7.5E-13 76.0 9.0 74 136-209 2-81 (104)
5 3frt_A Charged multivesicular 98.4 1.8E-07 6.3E-12 79.9 4.7 153 30-191 3-164 (218)
6 2v6x_B DOA4-independent degrad 97.6 1.7E-05 5.8E-10 53.0 1.4 48 196-243 2-52 (54)
7 4abm_A Charged multivesicular 97.5 0.0032 1.1E-07 45.1 12.0 74 34-112 3-77 (79)
8 2gd5_A Charged multivesicular 97.4 7E-05 2.4E-09 61.8 3.2 148 41-191 11-164 (179)
9 3frr_A Uncharacterized protein 96.8 0.067 2.3E-06 44.4 15.7 166 24-196 3-180 (191)
10 2luh_B Vacuolar protein-sortin 96.0 0.0045 1.5E-07 41.7 2.9 54 137-190 1-54 (59)
11 3ggy_A Increased sodium tolera 94.8 1.3 4.3E-05 36.8 14.7 159 34-196 8-185 (193)
12 2xze_Q Charged multivesicular 93.4 0.0062 2.1E-07 37.9 -1.6 14 230-243 27-40 (40)
13 3ggz_E Vacuolar protein-sortin 93.4 0.06 2E-06 30.9 2.6 16 228-243 14-29 (29)
14 2lxm_B Charged multivesicular 87.4 0.36 1.2E-05 32.2 2.5 36 153-188 1-37 (57)
15 2hh7_A Hypothetical protein CS 76.7 16 0.00053 27.8 8.4 48 89-136 9-56 (119)
16 3twe_A Alpha4H; unknown functi 76.0 1.4 4.9E-05 24.0 1.7 14 230-243 9-22 (27)
17 3um3_B Charged multivesicular 72.3 27 0.00092 25.8 8.6 48 153-203 15-64 (104)
18 3aai_A Copper homeostasis oper 63.1 30 0.001 24.9 7.1 48 89-136 13-61 (94)
19 4adz_A CSOR; transcription, co 62.9 39 0.0013 26.2 8.0 49 88-136 50-98 (136)
20 3mq9_A Bone marrow stromal ant 51.3 1.4E+02 0.0047 26.9 14.4 36 17-52 356-392 (471)
21 1t3j_A Mitofusin 1; coiled coi 42.2 91 0.0031 22.6 6.7 35 31-65 41-75 (96)
22 2w6b_A RHO guanine nucleotide 34.4 95 0.0033 20.2 6.0 40 34-73 14-53 (56)
23 1z0k_B FYVE-finger-containing 29.9 1.3E+02 0.0045 20.4 6.8 40 57-96 26-65 (69)
24 2y6x_A PSB27, photosystem II 1 27.7 1.5E+02 0.0052 22.0 6.0 39 14-52 72-110 (113)
25 1gmj_A ATPase inhibitor; coile 27.4 1.5E+02 0.0051 21.0 5.6 39 31-69 38-76 (84)
26 1yzm_A FYVE-finger-containing 27.1 1.3E+02 0.0043 19.3 7.0 41 57-97 8-48 (51)
27 1gp8_A Protein (scaffolding pr 25.5 1.1E+02 0.0038 18.5 3.9 25 62-86 12-36 (40)
28 3n94_A Fusion protein of malto 25.5 1.4E+02 0.0046 26.7 6.6 46 17-62 344-390 (475)
29 2kmf_A Photosystem II 11 kDa p 20.2 2.1E+02 0.0071 21.4 5.5 36 14-49 76-111 (115)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-51 Score=352.30 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=140.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 28 KTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVA 107 (244)
Q Consensus 28 k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~ 107 (244)
++||+|++|+|++.||+++|+|+|++.+|++++++++.+||+++++||+++|||||+++||+|+++.+||.++++|++|+
T Consensus 5 ~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~ 84 (218)
T 3frt_A 5 EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVL 84 (218)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHH
Q 026014 108 THTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQV 187 (244)
Q Consensus 108 ~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qv 187 (244)
++|+++.++.+++++|++++++|+.+|++||+|+|+.+|++|++||+++|++++||+|+|++.++.+++++|+|++|++|
T Consensus 85 ~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kV 164 (218)
T 3frt_A 85 MGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (218)
T ss_dssp HHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888899999999999
Q ss_pred HHHhcchhhhhcccCCCC---cccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014 188 LDEIGVDIASQLSSAPKG---RIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR 243 (244)
Q Consensus 188 ldE~~~~~~~~L~~aP~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~ 243 (244)
|+|+|. ++|+.+|++ .+|.+. +..+.++....+++++++++|++||++||+
T Consensus 165 ldEi~~---~~l~~~p~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 165 LFEITA---GALGKAPSKVTDALPEPE--PPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp HHTC-------------------------------------------------------
T ss_pred HHHHhH---hHhhcCCCCCCCCCCCcc--ccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 999994 456666654 333211 110011111123344667899999999995
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=2.3e-44 Score=301.81 Aligned_cols=179 Identities=26% Similarity=0.395 Sum_probs=141.7
Q ss_pred HHcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 23 NIFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQ 102 (244)
Q Consensus 23 ~lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq 102 (244)
++|+ +|||+|++|+|++.||+++|+|+|++.+|++++++++.+||+++++||+++||+||+++||+|+++.+|+.++++
T Consensus 1 ~~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~ 79 (179)
T 2gd5_A 1 GAMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAH 79 (179)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHH
Q 026014 103 IRGVATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEE 182 (244)
Q Consensus 103 l~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~ 182 (244)
|++|+++|+++.++..++++|+.++++|+.+|+.||+|+|+++|++|+++++++|+++|+|+++|+++++++++++++|+
T Consensus 80 l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~ 159 (179)
T 2gd5_A 80 MNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEM 159 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhcchhhhhcccCCCC
Q 026014 183 LTNQVLDEIGVDIASQLSSAPKG 205 (244)
Q Consensus 183 lv~qvldE~~~~~~~~L~~aP~~ 205 (244)
+|++|++|+|+ ++||.+|++
T Consensus 160 ~v~kVl~E~~~---~~l~~~P~~ 179 (179)
T 2gd5_A 160 EIDRILFEITA---GALGKAPSK 179 (179)
T ss_dssp HHHHTTCCC--------------
T ss_pred HHHHHHHHhhH---hhcccCCCC
Confidence 99999999995 478887753
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=98.89 E-value=6.9e-11 Score=78.35 Aligned_cols=49 Identities=29% Similarity=0.546 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcchhhhhcccCCCCcccCCCCCccccCCCCCCCCCCCccHHHHHHHHHhhhC
Q 026014 180 TEELTNQVLDEIGVDIASQLSSAPKGRIASRNAPNAVANAPKTNTSSESADVEDLEKRFASLRR 243 (244)
Q Consensus 180 ~d~lv~qvldE~~~~~~~~L~~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddL~~RL~aLr~ 243 (244)
||++|+||+||+|++++.+|+.+|.+.++.+ . ...++|+|.+||++||+
T Consensus 2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~----~-----------~~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS----V-----------ASAEQDELSQRLARLRD 50 (50)
T ss_dssp CCHHHHHHHHHTTCC---------CHHHHHH----H-----------HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchHHhhcccccccccCCC----C-----------CcccHHHHHHHHHHHhC
Confidence 6899999999999999999999987654321 0 12468999999999995
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=98.80 E-value=2.2e-08 Score=76.03 Aligned_cols=74 Identities=26% Similarity=0.360 Sum_probs=61.5
Q ss_pred hCCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhc--cccchhhhHHHHHHHHHHHHHHhcchhh----hhcccCCCCcccC
Q 026014 136 QMKPAKQAKLIKEFQKQSAQMDMTIEMMSESID--ETLDKDEAEEETEELTNQVLDEIGVDIA----SQLSSAPKGRIAS 209 (244)
Q Consensus 136 ~m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~--~~~d~~~~eeE~d~lv~qvldE~~~~~~----~~L~~aP~~~~~~ 209 (244)
.||+++|.++|+++..+++..+.|+++|+.+++ ..+|+++.++|++++.++.+++-.+++. ..||++|++.+|.
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~ 81 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS 81 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence 589999999999999999999999999999874 4577778888888888888877555443 3588899887764
No 5
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.40 E-value=1.8e-07 Score=79.89 Aligned_cols=153 Identities=10% Similarity=0.196 Sum_probs=79.3
Q ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 026014 30 TPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIK---KTAKTGNEAATRILARQLVRLR-QQITNLQGSRAQIRG 105 (244)
Q Consensus 30 ~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iK---ka~kkg~~~~ari~Ak~lvr~r-k~~~~l~~~~aql~s 105 (244)
+|+.-+++. +|...|.|.+..+.|+++-.+++.+=| ..+|+- ++--=.+..|.- +...+.-+...++-.
T Consensus 3 ~~~~~p~e~---~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKka----akkg~~~~arilAkelVR~Rk~~~rl~~ 75 (218)
T 3frt_A 3 MQEKPPKEL---VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA----AKKGQKDVCIVLAKEMIRSRKAVSKLYA 75 (218)
T ss_dssp -----CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556554 556666777777777777766655544 344432 221111222211 233344466777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHhhh---HHHHhhhhhccccchhhhHHHH
Q 026014 106 VATHTQALYASTSISTGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQMDM---TIEMMSESIDETLDKDEAEEET 180 (244)
Q Consensus 106 v~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~~~---~~e~m~d~~~~~~d~~~~eeE~ 180 (244)
+.++|++.....+...++..++.+|+.+.+. ...+...| .++..-|..+.- .-+++++.|++++|+....++.
T Consensus 76 ~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~ 153 (218)
T 3frt_A 76 SKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEM 153 (218)
T ss_dssp HHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCc
Confidence 8899999888888888888888888888877 55666666 777777777632 2235677888888765545555
Q ss_pred HHHHHHHHHHh
Q 026014 181 EELTNQVLDEI 191 (244)
Q Consensus 181 d~lv~qvldE~ 191 (244)
++.++.+.+.+
T Consensus 154 eee~d~~v~kV 164 (218)
T 3frt_A 154 EEEAEMEIDRI 164 (218)
T ss_dssp TTSTTTHHHHH
T ss_pred hHHHHHHHHHH
Confidence 66666666654
No 6
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=97.59 E-value=1.7e-05 Score=53.04 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=24.0
Q ss_pred hhhcccCCCCcccCCCCCcc-ccCCCCCCCCCC--CccHHHHHHHHHhhhC
Q 026014 196 ASQLSSAPKGRIASRNAPNA-VANAPKTNTSSE--SADVEDLEKRFASLRR 243 (244)
Q Consensus 196 ~~~L~~aP~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ddL~~RL~aLr~ 243 (244)
+.+|.++|++....+..... ..++++.+...+ ...+||||+||++||+
T Consensus 2 ~~qL~~aP~~~~~~~~~~~~~~~va~a~g~~~~~~~~~ddDLQARLdsLRR 52 (54)
T 2v6x_B 2 SHMLQSTPQNLVSNAPIAETAMGIAEPIGAGSEFHGNPDDDLQARLNTLKK 52 (54)
T ss_dssp -CCCCCCCHHHHTTCCCGGGGSSSSCC----------CCHHHHHHHHHHHC
T ss_pred cchhhhccccccccccccccccccccccccCCCCCCCchHHHHHHHHHhcc
Confidence 45688888764433222111 001222211111 3468999999999997
No 7
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.46 E-value=0.0032 Score=45.14 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 026014 34 ALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQ-GSRAQIRGVATHTQA 112 (244)
Q Consensus 34 ~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aql~sv~~ql~~ 112 (244)
.+.+++..|+.+...|+.....|+..-.......|+++ .+| +..|..++|+||++++.+ ++.+++++++.++.+
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566667777888888888888777777777777777 555 346788999999887755 899999999888765
No 8
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.42 E-value=7e-05 Score=61.83 Aligned_cols=148 Identities=11% Similarity=0.187 Sum_probs=84.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 41 DMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLR-QQITNLQGSRAQIRGVATHTQALYASTSI 119 (244)
Q Consensus 41 ~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~r-k~~~~l~~~~aql~sv~~ql~~a~~~~~~ 119 (244)
.||...+.|.+.++.|+++-.+++.+-|+....= ..+++--..+..|.. +...+.-+...+|....++|++.....+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998887776553321 112221111222211 22333345677778888999999988888
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHhhhHHH---HhhhhhccccchhhhHHHHHHHHHHHHHHh
Q 026014 120 STGMRGATKAMVAMNQQMKPAKQAKLI--KEFQKQSAQMDMTIE---MMSESIDETLDKDEAEEETEELTNQVLDEI 191 (244)
Q Consensus 120 ~~am~~~~~~Mk~~n~~m~l~~i~~~M--~ef~ke~e~~~~~~e---~m~d~~~~~~d~~~~eeE~d~lv~qvldE~ 191 (244)
..++..++.+|+.+.+. +..+.+.| +++..-|+.+..-.+ ++++.|++.+++..++++.+++++.+++.+
T Consensus 90 ~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp HHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 88888888888888777 44555555 566666666644444 457888888876655556666666666654
No 9
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=96.83 E-value=0.067 Score=44.44 Aligned_cols=166 Identities=8% Similarity=0.076 Sum_probs=106.5
Q ss_pred HcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 24 IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQI 103 (244)
Q Consensus 24 lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql 103 (244)
+||+++.+ -+.+..|+-++..|.=-.++-....++...+|-+.++.|..+.||+-+.++||-.+...=|.-+.--.
T Consensus 3 mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyC 78 (191)
T 3frr_A 3 MLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYC 78 (191)
T ss_dssp -CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58877653 35666677777777777777777888889999999999999999999999999999887776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CCHHHHHHHHH----HHHHHHHHh------hhHHHHhhhhhcccc
Q 026014 104 RGVATHTQALYASTSISTGMRGATK-AMVAMNQQ-MKPAKQAKLIK----EFQKQSAQM------DMTIEMMSESIDETL 171 (244)
Q Consensus 104 ~sv~~ql~~a~~~~~~~~am~~~~~-~Mk~~n~~-m~l~~i~~~M~----ef~ke~e~~------~~~~e~m~d~~~~~~ 171 (244)
+-+..++.....+...-..++.+.. .+=...+. -++|.+..+=+ .|-++|... +-++..+-.-+....
T Consensus 79 elL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~~~ 158 (191)
T 3frr_A 79 DLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEA 158 (191)
T ss_dssp HHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCCSC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCCCC
Confidence 6666665554443333333433333 33344443 67888875543 344444432 112222222222111
Q ss_pred chhhhHHHHHHHHHHHHHHhcchhh
Q 026014 172 DKDEAEEETEELTNQVLDEIGVDIA 196 (244)
Q Consensus 172 d~~~~eeE~d~lv~qvldE~~~~~~ 196 (244)
-+.+-++..+.+|+.++|++..
T Consensus 159 ---P~~~lv~~yL~EIA~~y~V~w~ 180 (191)
T 3frr_A 159 ---PPKILVERYLIEIAKNYNVPYE 180 (191)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCCC
T ss_pred ---cCHHHHHHHHHHHHHHcCCCCC
Confidence 1256788889999999987763
No 10
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0045 Score=41.70 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHhhhhhccccchhhhHHHHHHHHHHHHHH
Q 026014 137 MKPAKQAKLIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDE 190 (244)
Q Consensus 137 m~l~~i~~~M~ef~ke~e~~~~~~e~m~d~~~~~~d~~~~eeE~d~lv~qvldE 190 (244)
+|+++|..+++++...++..+.|+++++.+.+-...++.++++++++++.+.+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 578999999999999999999999999998764321233466777777766655
No 11
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=94.80 E-value=1.3 Score=36.76 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026014 34 ALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQAL 113 (244)
Q Consensus 34 ~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~ql~~a 113 (244)
..-+.+..|+-++..|.=-.++-...-+....+|-+.++.|..+.||+-+.++||-.+...=|.-+.--.+-+..++...
T Consensus 8 ~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll 87 (193)
T 3ggy_A 8 FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVI 87 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888889999999999999999999999999999998877665555555555555443
Q ss_pred HH--------HHHHHHHHHHHHHH-HHHHHhhCCHHHHHHHH----HHHHHHHHH------hhhHHHHhhhhhccccchh
Q 026014 114 YA--------STSISTGMRGATKA-MVAMNQQMKPAKQAKLI----KEFQKQSAQ------MDMTIEMMSESIDETLDKD 174 (244)
Q Consensus 114 ~~--------~~~~~~am~~~~~~-Mk~~n~~m~l~~i~~~M----~ef~ke~e~------~~~~~e~m~d~~~~~~d~~ 174 (244)
.. ....-..++.+... +=...+..++|.+..+= ..|-++|.. .|+-..++.- +....
T Consensus 88 ~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~~~--- 163 (193)
T 3ggy_A 88 NDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSPSV--- 163 (193)
T ss_dssp TTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSCCC---
T ss_pred HhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCCCC---
Confidence 33 22222334433333 33344446888886443 334444433 2322222222 22111
Q ss_pred hhHHHHHHHHHHHHHHhcchhh
Q 026014 175 EAEEETEELTNQVLDEIGVDIA 196 (244)
Q Consensus 175 ~~eeE~d~lv~qvldE~~~~~~ 196 (244)
-+.+-++..+.+|+.++|++..
T Consensus 164 P~~elv~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 164 PKEELVDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCC
Confidence 1256788999999999998765
No 12
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=93.39 E-value=0.0062 Score=37.86 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=11.6
Q ss_pred cHHHHHHHHHhhhC
Q 026014 230 DVEDLEKRFASLRR 243 (244)
Q Consensus 230 ~~ddL~~RL~aLr~ 243 (244)
+...|+.||++||+
T Consensus 27 di~~MqsRLaALRS 40 (40)
T 2xze_Q 27 ALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 34679999999996
No 13
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.06 Score=30.90 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.1
Q ss_pred CccHHHHHHHHHhhhC
Q 026014 228 SADVEDLEKRFASLRR 243 (244)
Q Consensus 228 ~~~~ddL~~RL~aLr~ 243 (244)
++.+|.|.+||++||.
T Consensus 14 eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 14 DEKEDKLAQRLRALRG 29 (29)
T ss_pred chhhHHHHHHHHHHcC
Confidence 5778999999999994
No 14
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=87.43 E-value=0.36 Score=32.17 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=11.2
Q ss_pred HHHhhhHHHHhhhhhcc-ccchhhhHHHHHHHHHHHH
Q 026014 153 SAQMDMTIEMMSESIDE-TLDKDEAEEETEELTNQVL 188 (244)
Q Consensus 153 ~e~~~~~~e~m~d~~~~-~~d~~~~eeE~d~lv~qvl 188 (244)
++..+.|+++|+.+++. .+|+++.+.|++++-+..+
T Consensus 1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~ 37 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELL 37 (57)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 35567889999987653 3565555556665555443
No 15
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=76.75 E-value=16 Score=27.82 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026014 89 LRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ 136 (244)
Q Consensus 89 ~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~ 136 (244)
+++...+|-+...|+.+|..=|+.-.-+..+...+..+..++..++..
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~ 56 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRV 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999988888778888888888888888877654
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=76.04 E-value=1.4 Score=23.99 Aligned_cols=14 Identities=43% Similarity=0.888 Sum_probs=12.0
Q ss_pred cHHHHHHHHHhhhC
Q 026014 230 DVEDLEKRFASLRR 243 (244)
Q Consensus 230 ~~ddL~~RL~aLr~ 243 (244)
+.+||+.||..||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999984
No 17
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=72.27 E-value=27 Score=25.81 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHhhhHHHHhhhhhccccc--hhhhHHHHHHHHHHHHHHhcchhhhhcccCC
Q 026014 153 SAQMDMTIEMMSESIDETLD--KDEAEEETEELTNQVLDEIGVDIASQLSSAP 203 (244)
Q Consensus 153 ~e~~~~~~e~m~d~~~~~~d--~~~~eeE~d~lv~qvldE~~~~~~~~L~~aP 203 (244)
+...-..++=|+++|+..++ .+.+++|++++++.+..+. +..++..++
T Consensus 15 i~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~---l~~~~l~~~ 64 (104)
T 3um3_B 15 IADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEE---LDKNLLEIS 64 (104)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH---HHHHhhccC
Confidence 33333444557788888774 3457899999999988875 355555443
No 18
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=63.15 E-value=30 Score=24.93 Aligned_cols=48 Identities=6% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 026014 89 LRQQITNLQGSRAQIRGVATHTQALY-ASTSISTGMRGATKAMVAMNQQ 136 (244)
Q Consensus 89 ~rk~~~~l~~~~aql~sv~~ql~~a~-~~~~~~~am~~~~~~Mk~~n~~ 136 (244)
+++...+|-+...|+.+|..=|+.-. -...+...+..+..++..++..
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~ 61 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEM 61 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999998888877 7888888888888888877654
No 19
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=62.92 E-value=39 Score=26.17 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026014 88 RLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMRGATKAMVAMNQQ 136 (244)
Q Consensus 88 r~rk~~~~l~~~~aql~sv~~ql~~a~~~~~~~~am~~~~~~Mk~~n~~ 136 (244)
.+++...+|-+...|+.+|..=|+.-.-...+...+..+..++..++..
T Consensus 50 ~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ 98 (136)
T 4adz_A 50 QKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQ 98 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888999999999988888777888888888888888777755
No 20
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.27 E-value=1.4e+02 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhhHHHH
Q 026014 17 ILKKTMN-IFRKKTTPKEALRESKRDMATATRGVERE 52 (244)
Q Consensus 17 ~m~~~~~-lFg~k~~~ke~~r~~~~~lr~~~r~Lere 52 (244)
.|...+. ++.++.+|++.+.++...++..+.++..+
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~ 392 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAV 392 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 3434444 44445699999999888777776665333
No 21
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=42.16 E-value=91 Score=22.62 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 026014 31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVA 65 (244)
Q Consensus 31 ~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~ 65 (244)
...++.....+|..++.+|++++..+|.-....+.
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55667777777777777777777777766554443
No 22
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=34.36 E-value=95 Score=20.16 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026014 34 ALRESKRDMATATRGVEREIAALQLEEKKLVAEIKKTAKT 73 (244)
Q Consensus 34 ~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKka~kk 73 (244)
++|+-...|+...+.|.+-...=++-.+.++.-+++.++.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~ 53 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555555555555555555555566666666666654
No 23
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=29.93 E-value=1.3e+02 Score=20.43 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Q 026014 57 QLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNL 96 (244)
Q Consensus 57 ek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l 96 (244)
..+...++.-|+.|.+.|..+-+.++..|+=....++.++
T Consensus 26 ~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 26 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3345556777999999999999999999887777766654
No 24
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=27.75 E-value=1.5e+02 Score=22.04 Aligned_cols=39 Identities=10% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhHHHH
Q 026014 14 TMKILKKTMNIFRKKTTPKEALRESKRDMATATRGVERE 52 (244)
Q Consensus 14 ~~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~Lere 52 (244)
-|.++.+.|+-||..|=|+........++..+.+-|.|.
T Consensus 72 AlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~al~Rg 110 (113)
T 2y6x_A 72 ALNSLAGHYSSYPNRPLPEKLKARLEQEFKQVELALDRE 110 (113)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 356778889999977878777665555555555544443
No 25
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.41 E-value=1.5e+02 Score=20.97 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026014 31 PKEALRESKRDMATATRGVEREIAALQLEEKKLVAEIKK 69 (244)
Q Consensus 31 ~ke~~r~~~~~lr~~~r~Lere~~klek~ekkl~~~iKk 69 (244)
-++++.+.+..|-..+..-..+|..++..-.+.+..|+.
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565554443222333333333333333333444443
No 26
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.05 E-value=1.3e+02 Score=19.28 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 026014 57 QLEEKKLVAEIKKTAKTGNEAATRILARQLVRLRQQITNLQ 97 (244)
Q Consensus 57 ek~ekkl~~~iKka~kkg~~~~ari~Ak~lvr~rk~~~~l~ 97 (244)
..+...++.-|+.|.+.|..+-+.++..|+=....++.++.
T Consensus 8 ~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 8 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677889999999999999999998877777666543
No 27
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=25.55 E-value=1.1e+02 Score=18.47 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026014 62 KLVAEIKKTAKTGNEAATRILARQL 86 (244)
Q Consensus 62 kl~~~iKka~kkg~~~~ari~Ak~l 86 (244)
.++.+|--|...||.+.++.+-.++
T Consensus 12 aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3556688899999999998875554
No 28
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=25.53 E-value=1.4e+02 Score=26.69 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026014 17 ILKKTMN-IFRKKTTPKEALRESKRDMATATRGVEREIAALQLEEKK 62 (244)
Q Consensus 17 ~m~~~~~-lFg~k~~~ke~~r~~~~~lr~~~r~Lere~~klek~ekk 62 (244)
.+...+. ++.++.+|++.+++....+++.+..|.++..+|...-+.
T Consensus 344 ~~~~~~~~~~~G~~t~eeal~~~~~~~~~~l~~l~~e~~~C~~~~~~ 390 (475)
T 3n94_A 344 AVRTAVINAASGRQTVDEALKDAQTNAAAEFAIFKKEQAMCLEKIQR 390 (475)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3433343 444466999999999999999999998888888766444
No 29
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=20.19 E-value=2.1e+02 Score=21.36 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhhH
Q 026014 14 TMKILKKTMNIFRKKTTPKEALRESKRDMATATRGV 49 (244)
Q Consensus 14 ~~~~m~~~~~lFg~k~~~ke~~r~~~~~lr~~~r~L 49 (244)
-|.++.+.|+-||..|=|+........++..+.+-|
T Consensus 76 AlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~al 111 (115)
T 2kmf_A 76 ALNSLAGYYTSYGARPIPEKLKKRLQLEFTQAERSI 111 (115)
T ss_dssp HHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356778899999977778776655444444443333
Done!