BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026021
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MIL|A Chain A, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
pdb|3MIL|B Chain B, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
Length = 240
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 27/222 (12%)
Query: 4 KIYLFGDSITESSFTYG---------GWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVME 54
K LFGDSITE +F GA+L + ++R +D++ RG+ GY +RWA+K++
Sbjct: 5 KFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILP 64
Query: 55 RVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLK 114
+L + + + +F GANDAC Q VPL E+ N+ +VS +K
Sbjct: 65 EIL----------KHESNIVMATIFLGANDAC----SAGPQSVPLPEFIDNIRQMVSLMK 110
Query: 115 NRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVV 174
+ + ++I P +D E K E G RTNE Y+ A ++A E +P V
Sbjct: 111 SY--HIRPIIIGPGLVDREKWEKEKSEEIALGYF-RTNENFAIYSDALAKLANEEKVPFV 167
Query: 175 DLWTKMQQL-ADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215
L QQ D L+DGLH + G ++ +E++ ++T
Sbjct: 168 ALNKAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDELLKVIET 209
>pdb|1YZF|A Chain A, Crystal Structure Of The LipaseACYLHYDROLASE FROM
ENTEROCOCCUS Faecalis
Length = 195
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 38/217 (17%)
Query: 4 KIYLFGDSITESSFTYGGWGASLAHHFSRT-VDVVLRGYSGYNTRWAVKVMERVLPAANG 62
KI LFGDSIT G+ L S VD+V R + V V+ +P
Sbjct: 3 KIVLFGDSIT------AGY---LDEAVSPVLVDLVKRDIAAMGLEE-VAVINAGMPGDTT 52
Query: 63 ESESERERVSTIA-----VAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRW 117
E +R + V +FFGANDA L DR ++ + ++ NL +++ + +
Sbjct: 53 EDGLKRLNKEVLIEKPDEVVIFFGANDASL-DR-----NITVATFRENLETMIHEIGSEK 106
Query: 118 PNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177
V+LITPP D R PER K EV LPV+DL+
Sbjct: 107 ----VILITPPYADSGRR------------PERPQTRIKELVKVAQEVGAAHNLPVIDLY 150
Query: 178 TKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLK 214
M +DGLH ++ G ++ +V ++K
Sbjct: 151 KAMTVYPGTDEFLQADGLHFSQVGYELLGALIVREIK 187
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 42/206 (20%)
Query: 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAA 60
+ P I GDSI E L F + +V RG GY T ++ ++ L
Sbjct: 33 VEPNILFIGDSIVEYY--------PLQELFGTSKTIVNRGIRGYQTGLLLENLDAHLYGG 84
Query: 61 NGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNT 120
+ + + G ND + VP++E +NL +I+ + +P T
Sbjct: 85 -----------AVDKIFLLIGTNDIG--------KDVPVNEALNNLEAIIQSVARDYPLT 125
Query: 121 LVLLITPPPIDEEARLKHP-YVENPTGLPERTNEAAGAYAKACIEVAGECG----LPVVD 175
+ L++ P++E + Y+ R+NE + +A E+A +PV D
Sbjct: 126 EIKLLSILPVNEREEYQQAVYI--------RSNEKIQNWNQAYQELASAYXQVEFVPVFD 177
Query: 176 LWTKMQQLADWKTAYLSDGLHLNETG 201
T Q K Y +DGLHL+ G
Sbjct: 178 CLTD--QAGQLKKEYTTDGLHLSIAG 201
>pdb|3DC7|A Chain A, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109.
pdb|3DC7|B Chain B, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109.
pdb|3DC7|C Chain C, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109
Length = 232
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 76 VAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEAR 135
+AVF G ND G + + L +++ L+ WP L I+ I +
Sbjct: 86 IAVFGGVNDYGRDQPLGQYGDCDXTTFYGALXXLLTGLQTNWPTVPKLFISAIHIGSDFG 145
Query: 136 LKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQ---QLADWKTAYLS 192
V N GL R ++ Y A + + G+P + L+ + Y
Sbjct: 146 GSFSAVTN--GLGYRQSD----YEAAIAQXTADYGVPHLSLYRDAGXTFAIPAQAAIYSV 199
Query: 193 DGLHLNETGNRVVFEEVVMKLKTEGL 218
D LH N G+RV+ ++ L + L
Sbjct: 200 DTLHPNNAGHRVIARKLQSFLDSHFL 225
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w.
pdb|3KHD|B Chain B, Crystal Structure Of Pff1300w.
pdb|3KHD|C Chain C, Crystal Structure Of Pff1300w.
pdb|3KHD|D Chain D, Crystal Structure Of Pff1300w
Length = 520
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 216 EGLSLENLPVDLPMISEIDPNDPL 239
+ ++L N+ VDLP+ISE D ND L
Sbjct: 200 KNMNLPNVKVDLPIISEKDKNDIL 223
>pdb|4G1G|A Chain A, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1G|B Chain B, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1L|A Chain A, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1L|B Chain B, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1O|A Chain A, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1O|B Chain B, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
Length = 364
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 213 LKTEGLSLENLPVDLPMISEIDPNDPL 239
LK G SL NL +++ + E+DP PL
Sbjct: 194 LKVSGSSLYNLALNVTIDVEVDPKSPL 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,751,903
Number of Sequences: 62578
Number of extensions: 316005
Number of successful extensions: 766
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 6
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)