Query 026021
Match_columns 244
No_of_seqs 131 out of 1336
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3035 Isoamyl acetate-hydrol 100.0 1.1E-45 2.5E-50 275.4 17.5 234 1-243 5-241 (245)
2 cd01838 Isoamyl_acetate_hydrol 100.0 7.2E-34 1.6E-38 221.2 20.0 196 4-213 1-199 (199)
3 cd01839 SGNH_arylesterase_like 100.0 3.9E-32 8.5E-37 213.2 17.6 181 4-215 1-207 (208)
4 cd01821 Rhamnogalacturan_acety 100.0 1E-31 2.2E-36 209.2 18.3 183 3-213 1-198 (198)
5 cd01841 NnaC_like NnaC (CMP-Ne 100.0 1.8E-31 3.9E-36 203.6 16.7 173 3-213 1-174 (174)
6 cd01836 FeeA_FeeB_like SGNH_hy 100.0 3.7E-31 8E-36 204.9 17.6 178 4-214 4-190 (191)
7 cd01827 sialate_O-acetylestera 100.0 5.9E-31 1.3E-35 203.2 17.8 176 4-213 2-187 (188)
8 cd04501 SGNH_hydrolase_like_4 100.0 7.6E-31 1.6E-35 201.8 18.1 177 4-213 2-183 (183)
9 PRK10528 multifunctional acyl- 100.0 9E-30 1.9E-34 196.9 18.2 172 3-216 11-186 (191)
10 cd01835 SGNH_hydrolase_like_3 100.0 1E-29 2.2E-34 197.1 17.6 182 4-211 3-191 (193)
11 cd01832 SGNH_hydrolase_like_1 100.0 6.7E-30 1.4E-34 196.8 16.1 172 4-211 1-184 (185)
12 cd01825 SGNH_hydrolase_peri1 S 100.0 8E-30 1.7E-34 197.0 16.1 179 4-216 1-188 (189)
13 cd04502 SGNH_hydrolase_like_7 100.0 2E-29 4.4E-34 191.8 16.4 168 4-213 1-171 (171)
14 cd01828 sialate_O-acetylestera 100.0 3.3E-29 7.1E-34 190.3 17.3 166 5-213 2-168 (169)
15 cd01822 Lysophospholipase_L1_l 100.0 4.9E-29 1.1E-33 190.6 18.2 168 4-213 2-176 (177)
16 cd01834 SGNH_hydrolase_like_2 100.0 1.9E-29 4.1E-34 195.0 15.2 182 3-211 2-190 (191)
17 cd01820 PAF_acetylesterase_lik 100.0 4.8E-29 1E-33 196.4 16.7 179 3-216 33-213 (214)
18 cd01844 SGNH_hydrolase_like_6 100.0 1.8E-28 3.9E-33 187.6 15.3 171 4-213 1-177 (177)
19 cd01833 XynB_like SGNH_hydrola 100.0 7.3E-28 1.6E-32 180.7 13.8 151 4-213 2-157 (157)
20 cd04506 SGNH_hydrolase_YpmR_li 100.0 5.1E-28 1.1E-32 189.2 13.1 187 4-211 1-203 (204)
21 cd01830 XynE_like SGNH_hydrola 100.0 4.3E-27 9.3E-32 184.0 17.8 181 4-210 1-201 (204)
22 cd01829 SGNH_hydrolase_peri2 S 99.9 6.8E-26 1.5E-30 176.6 16.3 177 4-215 1-200 (200)
23 cd01831 Endoglucanase_E_like E 99.9 2.4E-24 5.2E-29 163.5 15.2 153 4-214 1-169 (169)
24 cd01823 SEST_like SEST_like. A 99.9 7.1E-25 1.5E-29 177.6 11.9 198 4-211 2-258 (259)
25 PF13472 Lipase_GDSL_2: GDSL-l 99.9 2.3E-24 5E-29 164.0 13.3 175 6-205 1-179 (179)
26 cd01840 SGNH_hydrolase_yrhL_li 99.9 7.3E-24 1.6E-28 157.7 14.8 149 4-213 1-150 (150)
27 PF14606 Lipase_GDSL_3: GDSL-l 99.9 3.2E-23 7E-28 154.7 10.3 168 3-214 2-178 (178)
28 cd00229 SGNH_hydrolase SGNH_hy 99.9 1.4E-21 3E-26 148.6 14.9 173 5-211 1-186 (187)
29 COG2755 TesA Lysophospholipase 99.9 2E-20 4.3E-25 147.6 15.5 184 4-217 10-212 (216)
30 PF00657 Lipase_GDSL: GDSL-lik 99.8 6.7E-21 1.5E-25 151.4 11.1 195 5-209 1-234 (234)
31 cd01824 Phospholipase_B_like P 99.8 1.2E-19 2.5E-24 148.2 16.2 179 34-215 82-285 (288)
32 cd01826 acyloxyacyl_hydrolase_ 99.8 6.1E-19 1.3E-23 141.4 15.4 166 36-211 94-304 (305)
33 cd01846 fatty_acyltransferase_ 99.8 4.2E-17 9.1E-22 132.9 16.5 197 4-211 1-269 (270)
34 COG2845 Uncharacterized protei 99.7 5.6E-17 1.2E-21 129.0 14.4 179 4-216 118-320 (354)
35 cd01842 SGNH_hydrolase_like_5 99.7 5.9E-16 1.3E-20 114.2 13.2 134 70-213 48-182 (183)
36 cd01837 SGNH_plant_lipase_like 99.5 6E-13 1.3E-17 110.8 12.6 208 3-211 1-313 (315)
37 cd01847 Triacylglycerol_lipase 99.5 9.2E-13 2E-17 108.0 12.4 199 3-213 2-281 (281)
38 KOG3670 Phospholipase [Lipid t 99.4 6.6E-12 1.4E-16 103.4 13.9 179 36-216 149-353 (397)
39 PRK15381 pathogenicity island 99.4 7.4E-12 1.6E-16 106.2 13.7 189 3-216 143-404 (408)
40 PF04311 DUF459: Protein of un 99.0 1.7E-09 3.7E-14 88.7 8.6 176 4-216 39-240 (327)
41 PLN03156 GDSL esterase/lipase; 99.0 9.6E-09 2.1E-13 86.6 12.2 143 73-216 158-349 (351)
42 PF13839 PC-Esterase: GDSL/SGN 98.9 3.1E-08 6.8E-13 80.2 13.3 141 72-213 100-261 (263)
43 PF07611 DUF1574: Protein of u 98.6 2.8E-06 6E-11 70.5 15.3 177 3-213 64-343 (345)
44 PF04914 DltD_C: DltD C-termin 98.2 2.3E-05 5.1E-10 56.1 9.2 94 104-215 36-129 (130)
45 COG3240 Phospholipase/lecithin 98.0 4E-05 8.7E-10 63.5 9.0 130 78-216 167-336 (370)
46 PF08885 GSCFA: GSCFA family; 97.8 0.00017 3.6E-09 57.7 9.4 129 70-207 99-249 (251)
47 PF03629 DUF303: Domain of unk 97.5 0.0034 7.3E-08 50.7 12.7 151 22-215 74-254 (255)
48 COG3966 DltD Protein involved 94.4 0.3 6.5E-06 40.7 8.1 94 104-216 295-390 (415)
49 PF14286 DHHW: DHHW protein 92.9 0.85 1.8E-05 39.1 8.8 100 104-213 154-253 (378)
50 PF13380 CoA_binding_2: CoA bi 90.6 2.8 6E-05 29.4 8.0 105 4-175 2-107 (116)
51 PRK15180 Vi polysaccharide bio 86.0 5.2 0.00011 35.3 8.0 65 151-215 206-273 (831)
52 PF07745 Glyco_hydro_53: Glyco 83.3 19 0.00041 30.4 10.1 144 70-216 123-283 (332)
53 COG5426 Uncharacterized membra 81.6 0.79 1.7E-05 34.9 1.2 74 1-89 1-87 (254)
54 cd02067 B12-binding B12 bindin 80.7 16 0.00035 25.3 9.0 44 70-130 48-92 (119)
55 COG2333 ComEC Predicted hydrol 79.2 12 0.00026 30.9 7.5 62 4-87 184-247 (293)
56 KOG2599 Pyridoxal/pyridoxine/p 78.4 35 0.00077 27.8 9.6 100 3-133 10-124 (308)
57 KOG0078 GTP-binding protein SE 77.8 9 0.00019 29.8 5.9 57 100-177 97-155 (207)
58 PRK08156 type III secretion sy 77.3 40 0.00088 28.8 10.2 125 103-238 229-358 (361)
59 PF05872 DUF853: Bacterial pro 77.0 31 0.00067 30.5 9.5 93 70-182 252-351 (502)
60 TIGR02717 AcCoA-syn-alpha acet 76.5 19 0.00041 31.8 8.4 20 157-176 108-127 (447)
61 TIGR02171 Fb_sc_TIGR02171 Fibr 74.9 83 0.0018 30.4 14.6 103 103-215 807-910 (912)
62 PF04311 DUF459: Protein of un 73.4 0.34 7.5E-06 40.4 -2.9 112 4-130 115-238 (327)
63 PF06935 DUF1284: Protein of u 71.4 8.4 0.00018 26.4 4.0 32 99-131 3-34 (103)
64 cd07182 RNaseH_typeII_bacteria 70.0 31 0.00068 26.2 7.3 46 171-216 92-141 (179)
65 PF00056 Ldh_1_N: lactate/mala 69.6 11 0.00024 27.3 4.6 51 70-128 67-120 (141)
66 PF02310 B12-binding: B12 bind 68.3 21 0.00046 24.6 5.8 42 71-129 50-91 (121)
67 KOG1388 Attractin and platelet 67.3 0.4 8.6E-06 37.1 -3.5 149 34-216 51-201 (217)
68 PF04321 RmlD_sub_bind: RmlD s 66.8 11 0.00024 30.9 4.6 100 3-130 1-104 (286)
69 PF00072 Response_reg: Respons 65.6 37 0.0008 22.6 8.2 39 71-128 42-80 (112)
70 PRK12468 flhB flagellar biosyn 65.6 91 0.002 27.0 10.6 104 103-214 241-349 (386)
71 PRK03670 competence damage-ind 64.8 23 0.00051 28.6 5.9 66 1-81 1-69 (252)
72 PRK05086 malate dehydrogenase; 63.5 25 0.00053 29.4 6.1 51 70-128 67-120 (312)
73 cd02070 corrinoid_protein_B12- 63.5 67 0.0015 24.8 8.9 42 70-128 131-174 (201)
74 PF12683 DUF3798: Protein of u 61.6 67 0.0015 26.2 7.8 108 34-179 65-172 (275)
75 PF03618 Kinase-PPPase: Kinase 61.2 34 0.00074 27.7 6.2 52 103-183 39-90 (255)
76 PF14587 Glyco_hydr_30_2: O-Gl 60.5 92 0.002 26.9 8.9 114 104-221 104-221 (384)
77 PRK13109 flhB flagellar biosyn 60.3 21 0.00045 30.5 5.1 104 102-213 242-350 (358)
78 PRK08154 anaerobic benzoate ca 59.9 52 0.0011 27.4 7.4 55 103-183 117-171 (309)
79 PF05141 DIT1_PvcA: Pyoverdine 59.5 27 0.00059 28.7 5.5 66 101-179 40-109 (278)
80 PLN00135 malate dehydrogenase 59.0 28 0.00061 29.1 5.6 51 70-128 56-110 (309)
81 cd00300 LDH_like L-lactate deh 58.9 24 0.00053 29.2 5.3 51 70-128 64-117 (300)
82 KOG0257 Kynurenine aminotransf 58.5 49 0.0011 28.7 6.9 19 157-175 192-210 (420)
83 COG0796 MurI Glutamate racemas 58.3 1E+02 0.0022 25.2 9.7 69 33-127 7-75 (269)
84 TIGR01772 MDH_euk_gproteo mala 58.0 32 0.00069 28.8 5.8 52 70-129 65-119 (312)
85 cd06533 Glyco_transf_WecG_TagA 58.0 34 0.00073 25.7 5.5 12 70-81 97-108 (171)
86 PRK12721 secretion system appa 57.6 25 0.00055 29.9 5.2 103 103-213 234-341 (349)
87 PTZ00325 malate dehydrogenase; 57.1 35 0.00076 28.7 5.9 51 70-128 74-127 (321)
88 PF03808 Glyco_tran_WecB: Glyc 56.6 35 0.00075 25.7 5.4 61 4-81 50-110 (172)
89 TIGR01771 L-LDH-NAD L-lactate 56.4 27 0.00059 28.9 5.1 51 70-128 62-115 (299)
90 cd01337 MDH_glyoxysomal_mitoch 56.3 32 0.00069 28.8 5.5 52 70-129 66-120 (310)
91 PRK00066 ldh L-lactate dehydro 56.2 31 0.00068 28.8 5.5 51 70-128 71-124 (315)
92 PRK06298 type III secretion sy 56.0 29 0.00063 29.6 5.3 91 116-214 253-343 (356)
93 TIGR01763 MalateDH_bact malate 55.4 32 0.0007 28.6 5.4 51 70-128 67-120 (305)
94 PRK12773 flhB flagellar biosyn 55.1 19 0.00042 32.8 4.2 89 116-212 551-639 (646)
95 COG1377 FlhB Flagellar biosynt 55.0 36 0.00079 29.0 5.6 93 114-214 257-349 (363)
96 PRK05395 3-dehydroquinate dehy 54.6 73 0.0016 23.4 6.4 85 121-216 3-92 (146)
97 PF00994 MoCF_biosynth: Probab 54.5 30 0.00064 25.0 4.6 64 5-82 2-66 (144)
98 PRK09108 type III secretion sy 54.5 31 0.00068 29.4 5.2 103 103-215 236-344 (353)
99 TIGR02026 BchE magnesium-proto 54.2 1.5E+02 0.0032 26.6 9.7 41 71-129 62-102 (497)
100 cd02068 radical_SAM_B12_BD B12 54.0 36 0.00078 23.9 4.9 42 71-130 38-79 (127)
101 PRK12772 bifunctional flagella 53.7 31 0.00066 31.8 5.4 104 102-213 496-604 (609)
102 PRK13602 putative ribosomal pr 53.5 42 0.00091 21.8 4.7 48 104-178 14-61 (82)
103 KOG0084 GTPase Rab1/YPT1, smal 53.4 72 0.0016 24.8 6.4 98 4-127 11-122 (205)
104 PLN02629 powdery mildew resist 53.3 7.2 0.00016 33.5 1.3 61 71-131 204-276 (387)
105 cd02071 MM_CoA_mut_B12_BD meth 53.0 77 0.0017 22.2 8.8 40 71-127 49-89 (122)
106 PRK13015 3-dehydroquinate dehy 52.8 90 0.0019 22.9 6.7 86 120-216 2-92 (146)
107 TIGR00696 wecB_tagA_cpsF bacte 52.8 37 0.00081 25.8 5.0 12 70-81 98-109 (177)
108 KOG1615 Phosphoserine phosphat 52.5 13 0.00028 28.7 2.4 73 101-204 88-160 (227)
109 PLN02199 shikimate kinase 52.2 77 0.0017 26.4 6.9 52 106-183 89-140 (303)
110 TIGR01404 FlhB_rel_III type II 52.2 33 0.00071 29.1 5.0 102 102-211 232-338 (342)
111 PLN02602 lactate dehydrogenase 52.1 45 0.00098 28.4 5.8 51 70-128 103-156 (350)
112 TIGR01088 aroQ 3-dehydroquinat 51.4 75 0.0016 23.1 6.0 62 154-216 25-90 (141)
113 COG2240 PdxK Pyridoxal/pyridox 50.4 1.4E+02 0.0031 24.5 9.7 102 3-131 1-114 (281)
114 PRK13601 putative L7Ae-like ri 50.2 45 0.00098 21.8 4.4 47 105-178 12-58 (82)
115 cd04121 Rab40 Rab40 subfamily. 49.7 47 0.001 25.3 5.2 42 71-127 77-118 (189)
116 TIGR00328 flhB flagellar biosy 49.7 41 0.00089 28.6 5.2 102 103-212 234-340 (347)
117 cd05291 HicDH_like L-2-hydroxy 49.2 45 0.00097 27.7 5.4 51 70-128 66-119 (306)
118 PTZ00344 pyridoxal kinase; Pro 49.0 1.5E+02 0.0033 24.4 9.6 17 1-18 3-19 (296)
119 cd05293 LDH_1 A subgroup of L- 48.8 43 0.00092 28.0 5.1 51 70-128 69-122 (312)
120 TIGR00067 glut_race glutamate 48.7 1.4E+02 0.0031 24.0 9.3 67 35-127 2-69 (251)
121 PRK00015 rnhB ribonuclease HII 47.7 1E+02 0.0022 23.9 6.7 42 171-212 111-152 (197)
122 cd00466 DHQase_II Dehydroquina 47.3 1E+02 0.0023 22.4 6.2 63 153-216 24-90 (140)
123 PRK04940 hypothetical protein; 47.2 69 0.0015 24.4 5.6 34 3-42 60-93 (180)
124 TIGR01759 MalateDH-SF1 malate 47.1 56 0.0012 27.5 5.6 51 70-128 77-131 (323)
125 cd00650 LDH_MDH_like NAD-depen 46.9 54 0.0012 26.4 5.4 54 70-128 68-121 (263)
126 PRK15029 arginine decarboxylas 46.8 1.5E+02 0.0032 28.3 8.7 44 71-129 52-95 (755)
127 PF12891 Glyco_hydro_44: Glyco 46.8 9.2 0.0002 30.5 0.9 82 94-178 147-231 (239)
128 KOG0094 GTPase Rab6/YPT6/Ryh1, 45.9 1.4E+02 0.0031 23.3 10.0 54 50-127 81-136 (221)
129 COG1058 CinA Predicted nucleot 45.8 83 0.0018 25.5 6.1 68 1-82 2-70 (255)
130 PRK03692 putative UDP-N-acetyl 45.8 60 0.0013 26.1 5.4 12 70-81 155-166 (243)
131 PF06309 Torsin: Torsin; Inte 45.3 1.1E+02 0.0024 21.8 6.2 43 70-120 81-123 (127)
132 PRK10239 2-amino-4-hydroxy-6-h 45.2 50 0.0011 24.6 4.5 38 75-128 3-40 (159)
133 PRK05702 flhB flagellar biosyn 45.1 57 0.0012 27.9 5.4 89 116-212 259-347 (359)
134 cd01338 MDH_choloroplast_like 45.1 65 0.0014 27.1 5.7 51 70-128 76-130 (322)
135 cd05290 LDH_3 A subgroup of L- 44.8 79 0.0017 26.4 6.1 51 70-128 66-121 (307)
136 TIGR00361 ComEC_Rec2 DNA inter 44.4 88 0.0019 29.2 7.0 60 4-85 576-636 (662)
137 cd01339 LDH-like_MDH L-lactate 44.4 66 0.0014 26.5 5.6 54 70-128 64-117 (300)
138 cd06266 RNaseH_typeII Ribonucl 44.3 1.1E+02 0.0024 23.5 6.5 111 78-216 31-150 (193)
139 cd05294 LDH-like_MDH_nadp A la 44.2 74 0.0016 26.5 5.9 51 70-128 70-123 (309)
140 PRK05339 PEP synthetase regula 44.1 1.8E+02 0.0039 23.8 10.2 52 103-183 45-96 (269)
141 PLN00106 malate dehydrogenase 44.1 69 0.0015 27.0 5.7 52 70-129 84-138 (323)
142 PF01380 SIS: SIS domain SIS d 43.8 89 0.0019 21.6 5.6 28 103-132 66-93 (131)
143 PF02581 TMP-TENI: Thiamine mo 43.8 1.1E+02 0.0024 23.0 6.4 43 153-201 39-82 (180)
144 PRK09483 response regulator; P 43.5 1.4E+02 0.003 22.5 8.8 41 71-130 46-86 (217)
145 COG1943 Transposase and inacti 43.2 53 0.0011 23.7 4.3 43 153-207 30-78 (136)
146 PRK09417 mogA molybdenum cofac 43.2 1E+02 0.0022 23.8 6.0 65 4-81 7-75 (193)
147 cd00886 MogA_MoaB MogA_MoaB fa 43.1 1.2E+02 0.0027 22.1 6.4 66 4-81 4-70 (152)
148 PF01707 Peptidase_C9: Peptida 43.0 1.9 4.2E-05 32.7 -3.2 44 198-241 44-89 (202)
149 PRK01018 50S ribosomal protein 42.6 76 0.0016 21.4 4.8 46 104-176 19-64 (99)
150 PRK11544 hycI hydrogenase 3 ma 42.4 1.4E+02 0.003 22.0 9.3 39 1-43 1-43 (156)
151 TIGR02667 moaB_proteo molybden 42.2 1.1E+02 0.0025 22.7 6.1 64 4-81 8-72 (163)
152 PTZ00409 Sir2 (Silent Informat 42.2 70 0.0015 26.2 5.3 66 1-85 174-239 (271)
153 PF00071 Ras: Ras family; Int 41.9 68 0.0015 23.1 4.9 72 71-177 70-142 (162)
154 KOG0087 GTPase Rab11/YPT3, sma 41.8 41 0.00089 26.4 3.6 10 4-13 16-25 (222)
155 cd00885 cinA Competence-damage 41.6 88 0.0019 23.5 5.4 64 4-81 3-67 (170)
156 cd00704 MDH Malate dehydrogena 41.5 74 0.0016 26.7 5.5 51 70-128 74-128 (323)
157 PRK06223 malate dehydrogenase; 41.2 68 0.0015 26.5 5.3 54 70-128 68-121 (307)
158 PF06866 DUF1256: Protein of u 41.0 1.5E+02 0.0033 22.2 6.6 55 71-126 23-93 (163)
159 PF07755 DUF1611: Protein of u 41.0 1.4E+02 0.003 24.9 6.8 83 70-178 212-294 (301)
160 TIGR02841 spore_YyaC putative 40.6 73 0.0016 23.1 4.5 25 102-126 45-69 (140)
161 PF00763 THF_DHG_CYH: Tetrahyd 40.6 1.2E+02 0.0027 21.0 6.1 56 99-176 9-64 (117)
162 PRK14138 NAD-dependent deacety 40.5 59 0.0013 26.1 4.6 66 1-85 153-218 (244)
163 cd01410 SIRT7 SIRT7: Eukaryoti 40.3 78 0.0017 24.6 5.1 65 1-84 130-194 (206)
164 KOG0393 Ras-related small GTPa 39.8 84 0.0018 24.4 5.1 43 71-127 75-117 (198)
165 cd02069 methionine_synthase_B1 39.6 1.8E+02 0.004 22.7 8.3 41 70-127 137-177 (213)
166 PRK06683 hypothetical protein; 39.2 91 0.002 20.3 4.5 45 106-177 16-60 (82)
167 PF03796 DnaB_C: DnaB-like hel 38.9 93 0.002 24.9 5.6 68 103-181 114-181 (259)
168 PRK02261 methylaspartate mutas 38.8 1.5E+02 0.0032 21.4 11.4 64 34-130 32-96 (137)
169 PRK11557 putative DNA-binding 38.5 1.1E+02 0.0023 24.9 6.0 29 103-133 188-216 (278)
170 PRK00955 hypothetical protein; 38.4 1.4E+02 0.003 27.7 7.0 102 4-128 16-132 (620)
171 PF14639 YqgF: Holliday-juncti 38.3 61 0.0013 23.9 4.0 55 48-127 50-106 (150)
172 PRK06512 thiamine-phosphate py 37.6 32 0.0007 27.1 2.6 41 154-200 55-96 (221)
173 PF02698 DUF218: DUF218 domain 37.6 1.1E+02 0.0023 22.2 5.4 31 99-130 19-49 (155)
174 TIGR01758 MDH_euk_cyt malate d 37.5 94 0.002 26.1 5.5 51 70-128 73-127 (324)
175 PF12242 Eno-Rase_NADH_b: NAD( 37.4 40 0.00087 21.7 2.5 29 3-37 40-68 (78)
176 cd00758 MoCF_BD MoCF_BD: molyb 36.9 1.4E+02 0.003 21.2 5.7 64 4-81 3-67 (133)
177 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 36.6 2.1E+02 0.0045 22.5 9.9 43 71-127 71-113 (222)
178 PRK07714 hypothetical protein; 36.5 1E+02 0.0022 20.8 4.7 47 105-178 22-68 (100)
179 COG1004 Ugd Predicted UDP-gluc 36.4 2.9E+02 0.0064 24.1 9.6 16 70-85 74-89 (414)
180 smart00852 MoCF_biosynth Proba 36.1 1.6E+02 0.0034 20.9 6.0 63 5-82 2-67 (135)
181 PF01359 Transposase_1: Transp 35.9 36 0.00079 22.1 2.3 46 74-119 31-76 (81)
182 COG0039 Mdh Malate/lactate deh 35.9 1.5E+02 0.0033 24.9 6.4 51 70-128 67-120 (313)
183 COG2201 CheB Chemotaxis respon 35.6 95 0.0021 26.5 5.2 51 4-80 3-55 (350)
184 PF09370 TIM-br_sig_trns: TIM- 35.4 1.3E+02 0.0027 24.6 5.6 54 71-127 169-222 (268)
185 cd01408 SIRT1 SIRT1: Eukaryoti 35.3 1.3E+02 0.0028 23.9 5.8 64 1-84 150-213 (235)
186 cd08778 Death_TNFRSF21 Death d 35.0 35 0.00076 21.3 1.9 56 160-215 4-71 (84)
187 PRK05442 malate dehydrogenase; 34.9 1.2E+02 0.0025 25.6 5.7 51 70-128 78-132 (326)
188 PLN02607 1-aminocyclopropane-1 34.9 1.2E+02 0.0026 26.7 6.0 25 104-128 185-209 (447)
189 cd06334 PBP1_ABC_ligand_bindin 34.8 2.4E+02 0.0052 23.7 7.7 15 71-85 194-208 (351)
190 cd03412 CbiK_N Anaerobic cobal 34.8 88 0.0019 22.1 4.3 38 75-127 3-40 (127)
191 COG0352 ThiE Thiamine monophos 34.6 50 0.0011 25.9 3.2 39 156-200 51-90 (211)
192 PRK00549 competence damage-ind 33.7 1.3E+02 0.0027 26.4 5.9 65 1-81 1-68 (414)
193 KOG1344 Predicted histone deac 33.7 2.1E+02 0.0045 23.0 6.4 54 70-127 246-299 (324)
194 TIGR01756 LDH_protist lactate 33.6 1.1E+02 0.0024 25.6 5.3 51 70-128 58-112 (313)
195 PRK09935 transcriptional regul 33.6 2E+02 0.0043 21.3 9.0 41 71-130 48-88 (210)
196 PRK10840 transcriptional regul 33.5 2.2E+02 0.0047 21.7 8.9 44 71-130 48-91 (216)
197 PF03652 UPF0081: Uncharacteri 33.3 1E+02 0.0022 22.2 4.5 56 50-127 40-95 (135)
198 PRK10100 DNA-binding transcrip 33.0 1.1E+02 0.0024 23.9 5.0 41 72-130 52-92 (216)
199 TIGR00608 radc DNA repair prot 33.0 1.8E+02 0.0038 23.0 6.1 55 105-176 147-201 (218)
200 PLN00112 malate dehydrogenase 33.0 98 0.0021 27.4 5.1 51 70-128 174-228 (444)
201 COG1440 CelA Phosphotransferas 33.0 1.6E+02 0.0035 20.1 6.6 23 154-176 57-81 (102)
202 cd01336 MDH_cytoplasmic_cytoso 32.9 1.7E+02 0.0037 24.6 6.4 51 70-128 76-130 (325)
203 cd05292 LDH_2 A subgroup of L- 32.7 1.2E+02 0.0026 25.2 5.4 51 70-128 65-118 (308)
204 PRK05583 ribosomal protein L7A 32.6 1.3E+02 0.0028 20.6 4.7 49 104-179 20-68 (104)
205 TIGR01757 Malate-DH_plant mala 31.9 1.1E+02 0.0023 26.6 5.1 51 70-128 118-172 (387)
206 PRK07283 hypothetical protein; 31.9 1.3E+02 0.0028 20.2 4.6 22 157-178 47-68 (98)
207 PRK15411 rcsA colanic acid cap 31.8 2.4E+02 0.0052 21.7 8.4 22 108-129 66-87 (207)
208 cd04131 Rnd Rnd subfamily. Th 31.6 1.6E+02 0.0034 22.0 5.5 43 71-127 71-113 (178)
209 PRK10430 DNA-binding transcrip 31.4 2.5E+02 0.0055 21.9 7.4 41 71-130 48-88 (239)
210 COG2197 CitB Response regulato 31.4 2.5E+02 0.0054 21.8 7.9 83 70-176 44-126 (211)
211 TIGR00200 cinA_nterm competenc 31.2 1.5E+02 0.0032 26.0 5.9 65 1-81 1-68 (413)
212 PF01312 Bac_export_2: FlhB Hr 31.1 27 0.00058 29.7 1.3 101 102-210 235-340 (343)
213 TIGR00177 molyb_syn molybdenum 30.5 1.6E+02 0.0034 21.3 5.2 63 4-81 4-75 (144)
214 PRK13505 formate--tetrahydrofo 30.3 3.9E+02 0.0084 24.5 8.3 22 186-207 453-474 (557)
215 PF08495 FIST: FIST N domain; 30.3 1.1E+02 0.0024 23.0 4.6 38 72-128 1-38 (198)
216 PRK13925 rnhB ribonuclease HII 30.0 2.6E+02 0.0057 21.6 6.8 45 171-215 106-151 (198)
217 COG2910 Putative NADH-flavin r 29.9 2.7E+02 0.0058 21.7 8.5 130 71-215 61-199 (211)
218 COG0112 GlyA Glycine/serine hy 29.7 1E+02 0.0022 26.8 4.4 60 97-181 146-206 (413)
219 PF04002 RadC: RadC-like JAB d 29.7 2E+02 0.0044 20.2 5.9 55 105-176 52-106 (123)
220 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 29.4 1.8E+02 0.0039 21.9 5.5 43 71-127 75-117 (182)
221 PRK14169 bifunctional 5,10-met 29.0 3.1E+02 0.0067 22.7 7.0 106 47-202 15-127 (282)
222 PRK13949 shikimate kinase; Pro 29.0 2.4E+02 0.0053 20.9 6.1 36 121-182 3-38 (169)
223 TIGR01019 sucCoAalpha succinyl 29.0 2.7E+02 0.0059 23.0 6.8 15 160-174 104-118 (286)
224 cd06346 PBP1_ABC_ligand_bindin 28.9 2.3E+02 0.0051 23.1 6.6 15 71-85 191-205 (312)
225 cd08071 MPN_DUF2466 Mov34/MPN/ 28.9 2E+02 0.0043 19.9 7.0 20 157-176 82-101 (113)
226 PF03982 DAGAT: Diacylglycerol 28.9 1.2E+02 0.0027 25.1 4.8 26 148-173 261-286 (297)
227 PF13552 DUF4127: Protein of u 28.8 3.1E+02 0.0067 24.7 7.6 57 71-131 57-115 (497)
228 cd05565 PTS_IIB_lactose PTS_II 28.6 1.9E+02 0.0041 19.6 8.0 19 41-59 8-26 (99)
229 cd01413 SIR2_Af2 SIR2_Af2: Arc 28.6 1.4E+02 0.003 23.5 4.9 66 1-85 146-211 (222)
230 PRK03512 thiamine-phosphate py 28.2 1.4E+02 0.0031 23.3 4.8 42 154-201 47-89 (211)
231 PRK09856 fructoselysine 3-epim 28.0 2.7E+02 0.0058 22.3 6.7 60 100-173 86-145 (275)
232 PRK00024 hypothetical protein; 28.0 2.3E+02 0.005 22.4 6.0 21 156-176 187-207 (224)
233 cd00544 CobU Adenosylcobinamid 27.9 2.3E+02 0.0049 21.2 5.7 52 101-168 100-157 (169)
234 PRK09836 DNA-binding transcrip 27.7 2.7E+02 0.0059 21.1 8.4 41 71-130 43-83 (227)
235 PRK11539 ComEC family competen 27.6 2.2E+02 0.0047 27.2 6.7 39 33-86 657-695 (755)
236 COG4558 ChuT ABC-type hemin tr 27.5 3.6E+02 0.0077 22.4 6.9 25 189-213 184-208 (300)
237 TIGR00381 cdhD CO dehydrogenas 27.5 3.6E+02 0.0077 23.4 7.3 46 70-127 151-196 (389)
238 PRK03604 moaC bifunctional mol 27.3 1.9E+02 0.0042 24.2 5.7 64 5-81 160-224 (312)
239 PRK08506 replicative DNA helic 27.2 2.4E+02 0.0053 25.1 6.7 29 152-180 324-352 (472)
240 PF02283 CobU: Cobinamide kina 27.1 2.5E+02 0.0054 21.0 5.8 54 99-168 96-155 (167)
241 PTZ00117 malate dehydrogenase; 27.0 1.9E+02 0.0042 24.1 5.8 51 70-128 71-124 (319)
242 cd00984 DnaB_C DnaB helicase C 27.0 2.8E+02 0.0061 21.6 6.5 29 153-181 146-174 (242)
243 COG2255 RuvB Holliday junction 26.8 3.8E+02 0.0083 22.5 7.8 109 98-233 30-155 (332)
244 COG0552 FtsY Signal recognitio 26.7 3.6E+02 0.0079 22.9 7.1 37 74-127 139-175 (340)
245 KOG2683 Sirtuin 4 and related 26.7 38 0.00083 27.0 1.4 13 1-13 221-233 (305)
246 PF05822 UMPH-1: Pyrimidine 5' 26.7 50 0.0011 26.6 2.0 17 2-18 179-195 (246)
247 PF06180 CbiK: Cobalt chelatas 26.7 1.3E+02 0.0029 24.5 4.5 41 75-129 3-43 (262)
248 PRK10046 dpiA two-component re 26.7 3E+02 0.0065 21.2 8.5 41 71-130 49-89 (225)
249 PRK03673 hypothetical protein; 26.7 1.9E+02 0.004 25.2 5.6 66 1-82 2-70 (396)
250 COG1103 Archaea-specific pyrid 26.5 2.1E+02 0.0045 23.7 5.4 51 104-175 140-191 (382)
251 cd01409 SIRT4 SIRT4: Eukaryoti 26.2 1.5E+02 0.0033 24.0 4.8 66 1-85 179-244 (260)
252 cd01875 RhoG RhoG subfamily. 25.9 2.9E+02 0.0063 20.7 9.5 43 71-127 73-115 (191)
253 PLN02674 adenylate kinase 25.8 3.2E+02 0.0068 22.0 6.5 16 119-134 31-46 (244)
254 PRK00865 glutamate racemase; P 25.7 3.6E+02 0.0077 21.8 9.9 70 33-128 7-76 (261)
255 PRK15076 alpha-galactosidase; 25.5 2E+02 0.0044 25.3 5.8 29 100-128 121-149 (431)
256 PF01261 AP_endonuc_2: Xylose 25.5 2.9E+02 0.0063 20.6 10.1 55 71-128 39-93 (213)
257 TIGR03600 phage_DnaB phage rep 25.5 3E+02 0.0064 24.0 6.8 29 153-181 327-355 (421)
258 PRK10336 DNA-binding transcrip 25.3 2.9E+02 0.0063 20.6 8.7 42 71-131 43-84 (219)
259 PHA02542 41 41 helicase; Provi 25.3 3.1E+02 0.0068 24.5 7.0 31 152-182 326-356 (473)
260 cd01873 RhoBTB RhoBTB subfamil 25.2 3.1E+02 0.0067 20.9 6.3 18 160-177 160-177 (195)
261 PRK05800 cobU adenosylcobinami 25.2 2.5E+02 0.0054 21.0 5.6 53 100-168 99-157 (170)
262 PRK10494 hypothetical protein; 25.2 3.7E+02 0.008 21.8 9.1 25 103-128 106-130 (259)
263 PF00205 TPP_enzyme_M: Thiamin 25.1 2.5E+02 0.0054 19.8 5.9 23 157-179 26-48 (137)
264 cd07367 CarBb CarBb is the B s 25.1 3.8E+02 0.0082 21.8 8.7 117 98-215 23-165 (268)
265 PF02896 PEP-utilizers_C: PEP- 25.0 1E+02 0.0022 25.6 3.6 48 78-127 201-256 (293)
266 PRK12465 xylose isomerase; Pro 25.0 4.8E+02 0.01 23.0 8.7 47 78-131 106-154 (445)
267 cd07180 RNaseH_typeII_Archaea_ 24.9 3.3E+02 0.0072 21.1 8.1 100 104-215 44-156 (204)
268 KOG1436 Dihydroorotate dehydro 24.8 4.3E+02 0.0094 22.4 12.0 61 37-116 183-243 (398)
269 PRK09279 pyruvate phosphate di 24.8 1.5E+02 0.0032 28.9 5.0 27 101-127 808-834 (879)
270 PRK10128 2-keto-3-deoxy-L-rham 24.7 91 0.002 25.4 3.3 44 73-118 168-211 (267)
271 COG3473 Maleate cis-trans isom 24.5 1.9E+02 0.0042 22.8 4.7 25 154-178 127-151 (238)
272 PF09547 Spore_IV_A: Stage IV 24.5 5.1E+02 0.011 23.1 7.8 59 96-179 159-218 (492)
273 PTZ00082 L-lactate dehydrogena 24.4 2.3E+02 0.0051 23.7 5.8 55 70-128 72-130 (321)
274 PRK14531 adenylate kinase; Pro 24.2 79 0.0017 23.8 2.7 27 1-31 1-27 (183)
275 smart00174 RHO Rho (Ras homolo 24.2 2.5E+02 0.0054 20.3 5.5 43 71-127 68-110 (174)
276 cd05014 SIS_Kpsf KpsF-like pro 24.0 2.5E+02 0.0054 19.3 5.8 27 103-131 60-86 (128)
277 cd01407 SIR2-fam SIR2 family o 23.8 1.8E+02 0.0039 22.7 4.8 65 1-85 143-207 (218)
278 PF05762 VWA_CoxE: VWA domain 23.8 3.6E+02 0.0078 21.1 7.1 25 104-130 166-190 (222)
279 COG0320 LipA Lipoate synthase 23.8 2.6E+02 0.0056 23.1 5.5 28 103-130 132-159 (306)
280 cd07364 PCA_45_Dioxygenase_B S 23.7 3.7E+02 0.0081 22.0 6.7 117 99-215 30-176 (277)
281 PRK05474 xylose isomerase; Pro 23.6 5.2E+02 0.011 22.9 8.8 37 95-131 106-144 (437)
282 COG3623 SgaU Putative L-xylulo 23.6 1.6E+02 0.0034 23.7 4.2 89 68-176 27-115 (287)
283 TIGR00676 fadh2 5,10-methylene 23.5 63 0.0014 26.4 2.2 23 191-213 249-271 (272)
284 PF13692 Glyco_trans_1_4: Glyc 23.3 2.1E+02 0.0046 19.6 4.8 29 100-128 15-43 (135)
285 PF02142 MGS: MGS-like domain 23.2 1.2E+02 0.0026 20.1 3.2 44 108-174 51-94 (95)
286 PRK05678 succinyl-CoA syntheta 23.2 3.8E+02 0.0083 22.2 6.7 16 160-175 106-121 (291)
287 PRK14092 2-amino-4-hydroxy-6-h 23.1 2.7E+02 0.0058 20.9 5.2 42 71-128 5-46 (163)
288 PF08477 Miro: Miro-like prote 23.0 2E+02 0.0043 19.3 4.5 45 71-127 72-116 (119)
289 COG2403 Predicted GTPase [Gene 22.8 1.7E+02 0.0037 25.4 4.5 26 101-126 281-306 (449)
290 COG0703 AroK Shikimate kinase 22.8 2.1E+02 0.0046 21.7 4.6 38 121-184 4-41 (172)
291 COG4030 Uncharacterized protei 22.8 42 0.00092 26.7 1.0 22 106-127 269-290 (315)
292 COG2327 WcaK Polysaccharide py 22.8 1.9E+02 0.0041 25.1 4.9 27 103-129 17-43 (385)
293 PRK01215 competence damage-ind 22.7 2.8E+02 0.006 22.6 5.7 62 4-81 7-71 (264)
294 TIGR00693 thiE thiamine-phosph 22.7 2.4E+02 0.0052 21.3 5.2 42 154-201 41-83 (196)
295 COG1737 RpiR Transcriptional r 22.7 2.3E+02 0.0051 23.1 5.4 30 101-132 188-217 (281)
296 PF14331 ImcF-related_N: ImcF- 22.6 2.6E+02 0.0057 22.7 5.6 50 71-125 24-75 (266)
297 PRK08999 hypothetical protein; 22.5 1.6E+02 0.0036 24.3 4.5 46 151-202 169-215 (312)
298 PF00464 SHMT: Serine hydroxym 22.5 1.3E+02 0.0028 26.2 3.9 57 99-180 151-208 (399)
299 cd04133 Rop_like Rop subfamily 22.4 2.9E+02 0.0063 20.6 5.5 43 71-127 71-113 (176)
300 cd01020 TroA_b Metal binding p 22.3 2E+02 0.0044 23.2 4.9 47 103-176 192-238 (264)
301 PF13242 Hydrolase_like: HAD-h 22.3 51 0.0011 20.6 1.2 10 4-13 23-32 (75)
302 KOG3363 Uncharacterized conser 22.3 98 0.0021 23.2 2.7 33 68-113 107-139 (196)
303 PF00150 Cellulase: Cellulase 22.3 4E+02 0.0087 21.1 7.9 129 71-219 33-165 (281)
304 PRK14456 ribosomal RNA large s 22.2 3.8E+02 0.0081 23.1 6.6 37 77-132 284-320 (368)
305 PTZ00346 histone deacetylase; 22.2 2.4E+02 0.0052 24.9 5.4 48 70-125 266-313 (429)
306 TIGR01579 MiaB-like-C MiaB-lik 21.9 2.8E+02 0.006 24.1 6.0 44 71-129 32-75 (414)
307 PRK12354 carbamate kinase; Rev 21.9 2.9E+02 0.0062 23.2 5.7 46 75-125 2-47 (307)
308 PLN02540 methylenetetrahydrofo 21.7 1.9E+02 0.0041 26.5 4.9 23 192-214 262-284 (565)
309 PTZ00106 60S ribosomal protein 21.7 2.4E+02 0.0051 19.5 4.4 44 105-175 29-72 (108)
310 TIGR03772 anch_rpt_subst ancho 21.7 6E+02 0.013 22.9 8.4 71 103-215 406-476 (479)
311 PF05728 UPF0227: Uncharacteri 21.6 1.7E+02 0.0037 22.4 4.1 32 4-41 60-91 (187)
312 PRK06732 phosphopantothenate-- 21.4 4.1E+02 0.009 20.9 6.9 52 163-215 173-226 (229)
313 KOG0782 Predicted diacylglycer 21.3 4.5E+02 0.0098 24.2 6.9 54 154-207 542-595 (1004)
314 PRK14466 ribosomal RNA large s 21.2 4.6E+02 0.0099 22.4 6.8 28 103-132 265-292 (345)
315 PRK10161 transcriptional regul 21.1 3.7E+02 0.0081 20.3 8.7 13 1-13 1-13 (229)
316 PRK13366 protocatechuate 4,5-d 21.0 4.7E+02 0.01 21.6 6.7 117 99-215 30-176 (284)
317 KOG1495 Lactate dehydrogenase 20.9 2.7E+02 0.0058 23.1 5.0 51 70-128 86-139 (332)
318 PRK05748 replicative DNA helic 20.8 4E+02 0.0087 23.4 6.8 29 153-181 338-366 (448)
319 PF06418 CTP_synth_N: CTP synt 20.6 4.5E+02 0.0097 21.6 6.3 48 71-130 132-179 (276)
320 cd00877 Ran Ran (Ras-related n 20.5 2.6E+02 0.0056 20.3 4.9 42 71-127 71-112 (166)
321 COG1358 RPL8A Ribosomal protei 20.4 2.9E+02 0.0063 19.4 4.7 52 102-179 28-79 (116)
322 TIGR01828 pyru_phos_dikin pyru 20.4 89 0.0019 30.2 2.7 27 101-127 802-828 (856)
323 TIGR03239 GarL 2-dehydro-3-deo 20.2 1.4E+02 0.003 24.1 3.5 44 73-118 161-204 (249)
324 PLN02450 1-aminocyclopropane-1 20.1 2.9E+02 0.0064 24.5 5.8 25 104-128 176-200 (468)
325 PF13481 AAA_25: AAA domain; P 20.1 2.1E+02 0.0046 21.3 4.4 61 103-177 126-186 (193)
326 PTZ00088 adenylate kinase 1; P 20.1 2.4E+02 0.0052 22.3 4.8 37 120-182 7-43 (229)
327 PF01083 Cutinase: Cutinase; 20.1 1.6E+02 0.0034 22.3 3.6 26 102-127 63-88 (179)
No 1
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=275.39 Aligned_cols=234 Identities=55% Similarity=0.923 Sum_probs=215.2
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|+|+|+++|||||+.++..+||...|+..|.++.+++++|++|++++|.+..+++++++.. ...|-+|+|++
T Consensus 5 ~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysGynSRwALkvL~~ifp~~~--------s~~p~lvtVff 76 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSGYNSRWALKVLPEIFPKGS--------SIQPVLVTVFF 76 (245)
T ss_pred ccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhccccc--------cCCceEEEEEe
Confidence 7899999999999999999999999999999999999999999999999999999998653 46789999999
Q ss_pred ccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHH
Q 026021 81 GANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAK 160 (244)
Q Consensus 81 G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (244)
|+||.+.++.+...++++.++|++|+++|++.+++..|.++||+++|||+++..+.... .+.....+.+.|+.+..|++
T Consensus 77 GaNDs~l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~-~e~~~~~~~RtNe~~~~Ya~ 155 (245)
T KOG3035|consen 77 GANDSCLPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQE-QEPYVLGPERTNETVGTYAK 155 (245)
T ss_pred cCccccCCCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHh-ccchhccchhhhhHHHHHHH
Confidence 99999999988889999999999999999999999999999999999999998666543 44444556689999999999
Q ss_pred HHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHhhcCCCC--CCCCCCCCC-CCCCCCCC
Q 026021 161 ACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKTEGLSL--ENLPVDLPM-ISEIDPND 237 (244)
Q Consensus 161 ~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~~~~~--~~~~~~~p~-~~~~~~~~ 237 (244)
+..++|++.++.++|+|..+.+..+|.+.+..||+|+|++||.++.+.|++.|+++|..+ +.+|..+|. ...+++..
T Consensus 156 ac~~la~e~~l~~vdlws~~Q~~~dw~~~~ltDGLHlS~~G~~ivf~Ei~kvl~ea~~~~~~k~lp~~fp~~~~~~d~k~ 235 (245)
T KOG3035|consen 156 ACANLAQEIGLYVVDLWSKMQESDDWQTSCLTDGLHLSPKGNKIVFDEILKVLKEAWPSPSPKNLPLEFPHRIVLADGKN 235 (245)
T ss_pred HHHHHHHHhCCeeeeHHhhhhhcccHHHHHhccceeeccccchhhHHHHHHHHHhccCCCCcccCCccCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999998877 789999999 66777788
Q ss_pred CCCcCC
Q 026021 238 PLKAFE 243 (244)
Q Consensus 238 ~~~~~~ 243 (244)
+.++||
T Consensus 236 ~~~~~~ 241 (245)
T KOG3035|consen 236 TLSLFE 241 (245)
T ss_pred hhhhhh
Confidence 877775
No 2
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=100.00 E-value=7.2e-34 Score=221.19 Aligned_cols=196 Identities=54% Similarity=0.871 Sum_probs=159.6
Q ss_pred eEEEEcccccccccC-CC--ChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 4 KIYLFGDSITESSFT-YG--GWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 4 ~il~iGDSit~~g~~-~~--~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
||+++|||+| .|.. .. +|...|++.+..++.++|.|++|.++.....++++.+.... ..+||+|||++
T Consensus 1 ~i~~~GDSit-~g~~~~~~~~~~~~l~~~~~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~--------~~~pd~vii~~ 71 (199)
T cd01838 1 KIVLFGDSIT-QFSFDQGEFGFGAALADVYSRKLDVINRGFSGYNTRWALKVLPKIFLEEK--------LAQPDLVTIFF 71 (199)
T ss_pred CEEEecCccc-ccccCCCCCcHHHHHHHHhcchhheeccCCCcccHHHHHHHHHHhcCccc--------cCCceEEEEEe
Confidence 6999999999 5544 33 79999999998778999999999999999889988887410 02899999999
Q ss_pred ccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHH
Q 026021 81 GANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAK 160 (244)
Q Consensus 81 G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (244)
|+||...... .+..+.++|.++++.+++.+++..|+++|++++++|.......... +.......+.+..+..|++
T Consensus 72 G~ND~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 146 (199)
T cd01838 72 GANDAALPGQ---PQHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPPVDEEAWEKSL--EDGGSQPGRTNELLKQYAE 146 (199)
T ss_pred cCccccCCCC---CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHhhhh--ccccCCccccHHHHHHHHH
Confidence 9999975321 1236789999999999999999889999999999998765432210 1111233467788999999
Q ss_pred HHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 161 ACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 161 ~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
.++++|+++++.|+|++..+....++...+..||+|||++||++||+.|++.|
T Consensus 147 ~~~~~a~~~~~~~iD~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~~ 199 (199)
T cd01838 147 ACVEVAEELGVPVIDLWTAMQEEAGWLESLLTDGLHFSSKGYELLFEEIVKVI 199 (199)
T ss_pred HHHHHHHHhCCcEEEHHHHHHhccCchhhhcCCCCCcCHhHHHHHHHHHHhhC
Confidence 99999999999999999998876655567889999999999999999998865
No 3
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=100.00 E-value=3.9e-32 Score=213.16 Aligned_cols=181 Identities=22% Similarity=0.298 Sum_probs=145.8
Q ss_pred eEEEEcccccccccC---------CCChHHHHHHhhccc---cceEeeccCCcchH---------HHHHHHHhhccccCC
Q 026021 4 KIYLFGDSITESSFT---------YGGWGASLAHHFSRT---VDVVLRGYSGYNTR---------WAVKVMERVLPAANG 62 (244)
Q Consensus 4 ~il~iGDSit~~g~~---------~~~~~~~l~~~~~~~---~~v~n~g~~G~~~~---------~~~~~l~~~~~~~~~ 62 (244)
+|+++|||+| .|+. ..+|+..|++.+... ++++|+|++|.++. +.+.++++.+..
T Consensus 1 ~I~~~GDSiT-~G~~~~~~~~~~~~~~w~~~L~~~l~~~~~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~--- 76 (208)
T cd01839 1 TILCFGDSNT-WGIIPDTGGRYPFEDRWPGVLEKALGANGENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALES--- 76 (208)
T ss_pred CEEEEecCcc-cCCCCCCCCcCCcCCCCHHHHHHHHccCCCCeEEEecCcCCcceeccCccccCcchHHHHHHHHHh---
Confidence 6999999999 7764 247999999999766 89999999999985 345667776653
Q ss_pred CcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhC-----CCceEEEEcCCCCChhhhhc
Q 026021 63 ESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRW-----PNTLVLLITPPPIDEEARLK 137 (244)
Q Consensus 63 ~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~-----p~~~vil~~~~~~~~~~~~~ 137 (244)
..+||+|+|++|+||+... ...++++|.++++++++.+++.. |+++|+++++|++.......
T Consensus 77 -------~~~pd~vii~lGtND~~~~------~~~~~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~~~ 143 (208)
T cd01839 77 -------HSPLDLVIIMLGTNDLKSY------FNLSAAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKGSL 143 (208)
T ss_pred -------CCCCCEEEEeccccccccc------cCCCHHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCccccch
Confidence 2799999999999998632 23478999999999999999986 88999999999872111100
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 138 HPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
.....+.+.....|++.++++|+++++.|+|++..+. .+..||+|||++||++||+.|++.|++
T Consensus 144 -------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~~~~~~-------~~~~DGvH~~~~G~~~~a~~l~~~i~~ 207 (208)
T cd01839 144 -------AGKFAGAEEKSKGLADAYRALAEELGCHFFDAGSVGS-------TSPVDGVHLDADQHAALGQALASVIRA 207 (208)
T ss_pred -------hhhhccHHHHHHHHHHHHHHHHHHhCCCEEcHHHHhc-------cCCCCccCcCHHHHHHHHHHHHHHHhh
Confidence 0112245678899999999999999999999977653 256899999999999999999999875
No 4
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=100.00 E-value=1e-31 Score=209.21 Aligned_cols=183 Identities=26% Similarity=0.368 Sum_probs=143.8
Q ss_pred CeEEEEcccccccccCC----CChHHHHHHhhccccceEeeccCCcchHHHHH--HHHhhccccCCCcccccccCCccEE
Q 026021 3 PKIYLFGDSITESSFTY----GGWGASLAHHFSRTVDVVLRGYSGYNTRWAVK--VMERVLPAANGESESERERVSTIAV 76 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~----~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~pd~v 76 (244)
|+|+++|||+| .|++. .+|...|.+.+...+.++|+|++|.++..+.. +++..+.. ..+||+|
T Consensus 1 ~~i~~~GDS~t-~G~~~~~~~~~w~~~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~----------~~~pdlV 69 (198)
T cd01821 1 PTIFLAGDSTV-ADYDPGAPQAGWGQALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKL----------IKPGDYV 69 (198)
T ss_pred CEEEEEecCCc-ccCCCCCCCCChHHHHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhh----------CCCCCEE
Confidence 68999999999 66643 69999999999777999999999999986543 55555553 2479999
Q ss_pred EEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHH
Q 026021 77 AVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAG 156 (244)
Q Consensus 77 ii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (244)
+|++|+||..... ....++.++|.++++++++.+++. ++++++++++|....... ...+..+.
T Consensus 70 ii~~G~ND~~~~~---~~~~~~~~~~~~nl~~ii~~~~~~--~~~~il~tp~~~~~~~~~------------~~~~~~~~ 132 (198)
T cd01821 70 LIQFGHNDQKPKD---PEYTEPYTTYKEYLRRYIAEARAK--GATPILVTPVTRRTFDEG------------GKVEDTLG 132 (198)
T ss_pred EEECCCCCCCCCC---CCCCCcHHHHHHHHHHHHHHHHHC--CCeEEEECCccccccCCC------------Ccccccch
Confidence 9999999996421 012457899999999999999996 577999998875322110 02345678
Q ss_pred HHHHHHHHHHHhcCCCeeechhHhhhh------hhcc---cccccccccCChhHHHHHHHHHHHHH
Q 026021 157 AYAKACIEVAGECGLPVVDLWTKMQQL------ADWK---TAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 157 ~~~~~~~~~a~~~~v~~iD~~~~~~~~------~~~~---~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
+|++.++++|++++++|+|++..+... .... ..+..||+|||++||++||+.+++.|
T Consensus 133 ~~~~~~~~~a~~~~~~~vD~~~~~~~~~~~~g~~~~~~~~~~~~~DgvHp~~~G~~~~a~~i~~~~ 198 (198)
T cd01821 133 DYPAAMRELAAEEGVPLIDLNAASRALYEAIGPEKSKKYFPEGPGDNTHFSEKGADVVARLVAEEL 198 (198)
T ss_pred hHHHHHHHHHHHhCCCEEecHHHHHHHHHHhChHhHHhhCcCCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999987532 1111 35789999999999999999998865
No 5
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=99.98 E-value=1.8e-31 Score=203.64 Aligned_cols=173 Identities=25% Similarity=0.358 Sum_probs=141.2
Q ss_pred CeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 3 PKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
++|+|+|||+| .|++.. ......+.++|.|++|.++.+...+++..+. ..+||+|+|++|+
T Consensus 1 ~~iv~~GdS~t-~~~~~~-------~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~-----------~~~pd~v~i~~G~ 61 (174)
T cd01841 1 KNIVFIGDSLF-EGWPLY-------EAEGKGKTVNNLGIAGISSRQYLEHIEPQLI-----------QKNPSKVFLFLGT 61 (174)
T ss_pred CCEEEEcchhh-hcCchh-------hhccCCCeEEecccccccHHHHHHHHHHHHH-----------hcCCCEEEEEecc
Confidence 38999999999 554321 1124558999999999999998888865555 3899999999999
Q ss_pred CCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHH
Q 026021 83 NDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKAC 162 (244)
Q Consensus 83 ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (244)
||+.. ..+.++|.++++++++.+++..|+++|+++++||+..... .....+..+..||+++
T Consensus 62 ND~~~--------~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~-----------~~~~~~~~~~~~n~~l 122 (174)
T cd01841 62 NDIGK--------EVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE-----------IKTRSNTRIQRLNDAI 122 (174)
T ss_pred ccCCC--------CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc-----------cccCCHHHHHHHHHHH
Confidence 99953 2389999999999999999999999999999988764321 1124567899999999
Q ss_pred HHHHHhcCCCeeechhHhhhhhh-cccccccccccCChhHHHHHHHHHHHHH
Q 026021 163 IEVAGECGLPVVDLWTKMQQLAD-WKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 163 ~~~a~~~~v~~iD~~~~~~~~~~-~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
+++|+++++.|+|++..+....+ ....+..||+|||++||++||+.|+++|
T Consensus 123 ~~~a~~~~~~~id~~~~~~~~~~~~~~~~~~DglH~n~~Gy~~~a~~l~~~~ 174 (174)
T cd01841 123 KELAPELGVTFIDLNDVLVDEFGNLKKEYTTDGLHFNPKGYQKLLEILEEYL 174 (174)
T ss_pred HHHHHHCCCEEEEcHHHHcCCCCCccccccCCCcccCHHHHHHHHHHHHhhC
Confidence 99999999999999999865432 2336789999999999999999998764
No 6
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.98 E-value=3.7e-31 Score=204.92 Aligned_cols=178 Identities=19% Similarity=0.272 Sum_probs=145.6
Q ss_pred eEEEEcccccccccC----CCChHHHHHHhhcc----ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccE
Q 026021 4 KIYLFGDSITESSFT----YGGWGASLAHHFSR----TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIA 75 (244)
Q Consensus 4 ~il~iGDSit~~g~~----~~~~~~~l~~~~~~----~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~ 75 (244)
||+++|||+| .|++ ..+|+..+++.+.. .+++.|.|++|.++..++.++++ .. ..+||+
T Consensus 4 ~i~~~GDSit-~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~-~~-----------~~~pd~ 70 (191)
T cd01836 4 RLLVLGDSTA-AGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAP-LP-----------ETRFDV 70 (191)
T ss_pred EEEEEecccc-ccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHh-cc-----------cCCCCE
Confidence 8999999999 7775 24688888877753 47899999999999998888877 33 389999
Q ss_pred EEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHH
Q 026021 76 VAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAA 155 (244)
Q Consensus 76 vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (244)
|+|++|+||+.. ..+.++|.++++++++.++++.|+++|+++++|++......+. ......++..
T Consensus 71 Vii~~G~ND~~~--------~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~-------~~~~~~~~~~ 135 (191)
T cd01836 71 AVISIGVNDVTH--------LTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQ-------PLRWLLGRRA 135 (191)
T ss_pred EEEEecccCcCC--------CCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcH-------HHHHHHHHHH
Confidence 999999999963 3478999999999999999988999999999988754321100 0011234567
Q ss_pred HHHHHHHHHHHHhc-CCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHh
Q 026021 156 GAYAKACIEVAGEC-GLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLK 214 (244)
Q Consensus 156 ~~~~~~~~~~a~~~-~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~ 214 (244)
..+|+.++++|+++ ++.|+|++..+. ...+..||+|||++||++||+.+.+.|+
T Consensus 136 ~~~n~~~~~~a~~~~~~~~id~~~~~~-----~~~~~~DglHpn~~Gy~~~a~~l~~~i~ 190 (191)
T cd01836 136 RLLNRALERLASEAPRVTLLPATGPLF-----PALFASDGFHPSAAGYAVWAEALAPAIA 190 (191)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCccc-----hhhccCCCCCCChHHHHHHHHHHHHHHh
Confidence 89999999999998 999999988764 2357789999999999999999999986
No 7
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.98 E-value=5.9e-31 Score=203.25 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=140.6
Q ss_pred eEEEEcccccccccC---CCChHHHHHHhhccccceEeeccCCcchHHH-------HHHHHhhccccCCCcccccccCCc
Q 026021 4 KIYLFGDSITESSFT---YGGWGASLAHHFSRTVDVVLRGYSGYNTRWA-------VKVMERVLPAANGESESERERVST 73 (244)
Q Consensus 4 ~il~iGDSit~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~p 73 (244)
||+++|||+| .|++ ..+|+..|++.++..+.++|.|++|.++... ...+.... ..+|
T Consensus 2 ~i~~~GDSit-~G~~~~~~~~~~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~------------~~~p 68 (188)
T cd01827 2 KVACVGNSIT-EGAGLRAYDSYPSPLAQMLGDGYEVGNFGKSARTVLNKGDHPYMNEERYKNAL------------AFNP 68 (188)
T ss_pred eEEEEecccc-cccCCCCCCchHHHHHHHhCCCCeEEeccCCcceeecCCCcCccchHHHHHhh------------ccCC
Confidence 7999999999 6765 3689999999998778999999999887432 12222222 3789
Q ss_pred cEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchH
Q 026021 74 IAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNE 153 (244)
Q Consensus 74 d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (244)
|+|+|++|+||..... ..+.++|.++++.+++.+++.+|+++|++++++|+...... ....+.
T Consensus 69 d~Vii~~G~ND~~~~~------~~~~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~-----------~~~~~~ 131 (188)
T cd01827 69 NIVIIKLGTNDAKPQN------WKYKDDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDGG-----------FINDNI 131 (188)
T ss_pred CEEEEEcccCCCCCCC------CccHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCC-----------ccchHH
Confidence 9999999999996421 23578999999999999999999999999999886533111 012345
Q ss_pred HHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 154 AAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
....+++.++++|+++++.++|++..+.... .+..||+|||++||++||+.++++|
T Consensus 132 ~~~~~~~~~~~~a~~~~~~~vD~~~~~~~~~----~~~~Dg~Hpn~~G~~~~A~~i~~~i 187 (188)
T cd01827 132 IKKEIQPMIDKIAKKLNLKLIDLHTPLKGKP----ELVPDWVHPNEKGAYILAKVVYKAI 187 (188)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEccccccCCc----cccCCCCCcCHHHHHHHHHHHHHHh
Confidence 6678999999999999999999998875443 3668999999999999999999987
No 8
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.98 E-value=7.6e-31 Score=201.82 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=147.0
Q ss_pred eEEEEcccccccccCC---CChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 4 KIYLFGDSITESSFTY---GGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 4 ~il~iGDSit~~g~~~---~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
||+++|||+| .|++. .+|...+....+ +.++|.|++|.++.+.+.++++.+. ..+||+|+|++
T Consensus 2 ~i~~~GDSi~-~g~~~~~~~~~~~~l~~~~~--~~v~n~g~~G~~~~~~l~~l~~~~~-----------~~~~d~v~i~~ 67 (183)
T cd04501 2 RVVCLGDSIT-YGYPVGPEASWVNLLAEFLG--KEVINRGINGDTTSQMLVRFYEDVI-----------ALKPAVVIIMG 67 (183)
T ss_pred eEEEEccccc-cCcCCCCcchHHHHHHhhcC--CeEEecCcCCccHHHHHHHHHHHHH-----------hcCCCEEEEEe
Confidence 8999999999 66653 479999888765 7899999999999999888887765 37899999999
Q ss_pred ccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHH
Q 026021 81 GANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAK 160 (244)
Q Consensus 81 G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (244)
|+||... ..+.++|.++++++++.+++. ++++++++++|.......+ .....+..+..||+
T Consensus 68 G~ND~~~--------~~~~~~~~~~~~~li~~~~~~--~~~~il~~~~p~~~~~~~~---------~~~~~~~~~~~~n~ 128 (183)
T cd04501 68 GTNDIIV--------NTSLEMIKDNIRSMVELAEAN--GIKVILASPLPVDDYPWKP---------QWLRPANKLKSLNR 128 (183)
T ss_pred ccCcccc--------CCCHHHHHHHHHHHHHHHHHC--CCcEEEEeCCCcCccccch---------hhcchHHHHHHHHH
Confidence 9999963 347899999999999999986 5679999988876543211 01244678899999
Q ss_pred HHHHHHHhcCCCeeechhHhhhhhh--cccccccccccCChhHHHHHHHHHHHHH
Q 026021 161 ACIEVAGECGLPVVDLWTKMQQLAD--WKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 161 ~~~~~a~~~~v~~iD~~~~~~~~~~--~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
.++++|++.++.++|++..+.+... ....+..||+|||++||++||+.+++.|
T Consensus 129 ~~~~~a~~~~v~~vd~~~~~~~~~~~~~~~~~~~DgvHp~~~Gy~~~a~~i~~~~ 183 (183)
T cd04501 129 WLKDYARENGLLFLDFYSPLLDERNVGLKPGLLTDGLHPSREGYRVMAPLAEKAL 183 (183)
T ss_pred HHHHHHHHcCCCEEechhhhhccccccccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999876542 3456789999999999999999998764
No 9
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=99.97 E-value=9e-30 Score=196.91 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=137.5
Q ss_pred CeEEEEcccccccccC---CCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEE
Q 026021 3 PKIYLFGDSITESSFT---YGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVF 79 (244)
Q Consensus 3 ~~il~iGDSit~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~ 79 (244)
.+|+|+|||+| .|+. ..+|+.++.+.+.....++|.|++|.++.....++++.+. ..+||+|+|+
T Consensus 11 ~~iv~~GDSit-~G~~~~~~~~w~~~l~~~l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~-----------~~~pd~Vii~ 78 (191)
T PRK10528 11 DTLLILGDSLS-AGYRMPASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLK-----------QHQPRWVLVE 78 (191)
T ss_pred CEEEEEeCchh-hcCCCCccCchHHHHHHHHhhCCCEEecCcCcccHHHHHHHHHHHHH-----------hcCCCEEEEE
Confidence 38999999999 6654 3579999999987777899999999999999888888776 3689999999
Q ss_pred eccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC-CCCChhhhhcCCCCCCCCCCCccchHHHHHH
Q 026021 80 FGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP-PPIDEEARLKHPYVENPTGLPERTNEAAGAY 158 (244)
Q Consensus 80 ~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (244)
+|+||.. ...+.++|.++++++++.++++++ +++++++ .|.. ......+.+
T Consensus 79 ~GtND~~--------~~~~~~~~~~~l~~li~~~~~~~~--~~ill~~~~P~~------------------~~~~~~~~~ 130 (191)
T PRK10528 79 LGGNDGL--------RGFPPQQTEQTLRQIIQDVKAANA--QPLLMQIRLPAN------------------YGRRYNEAF 130 (191)
T ss_pred eccCcCc--------cCCCHHHHHHHHHHHHHHHHHcCC--CEEEEEeecCCc------------------ccHHHHHHH
Confidence 9999985 246899999999999999999754 4555542 2211 001244679
Q ss_pred HHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 159 AKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 159 ~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
++.++++|++++++|+|.+..... ....++..||+|||++||+.||+.+++.|++.
T Consensus 131 ~~~~~~~a~~~~v~~id~~~~~~~--~~~~~~~~DGiHpn~~Gy~~~A~~i~~~l~~~ 186 (191)
T PRK10528 131 SAIYPKLAKEFDIPLLPFFMEEVY--LKPQWMQDDGIHPNRDAQPFIADWMAKQLQPL 186 (191)
T ss_pred HHHHHHHHHHhCCCccHHHHHhhc--cCHhhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998744321 12234678999999999999999999998764
No 10
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=1e-29 Score=197.13 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=142.9
Q ss_pred eEEEEcccccccccC---CCChHHHHHHhhc---cccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEE
Q 026021 4 KIYLFGDSITESSFT---YGGWGASLAHHFS---RTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVA 77 (244)
Q Consensus 4 ~il~iGDSit~~g~~---~~~~~~~l~~~~~---~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vi 77 (244)
||+++|||+| .|++ ..+|..++.+.+. ..+.+.|.|++|.++.....++++.+.... ...+||+|+
T Consensus 3 ~i~~lGDSit-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~-------~~~~pd~V~ 74 (193)
T cd01835 3 RLIVVGDSLV-YGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRG-------ELNVPNRLV 74 (193)
T ss_pred EEEEEcCccc-cCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhc-------ccCCCCEEE
Confidence 8999999999 6664 3589999887663 458899999999999988888776553210 026899999
Q ss_pred EEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHH
Q 026021 78 VFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGA 157 (244)
Q Consensus 78 i~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (244)
|++|+||...... .....+.++|.++++++++.+++ +++|++++++|+..... ...+..+..
T Consensus 75 i~~G~ND~~~~~~--~~~~~~~~~~~~~~~~ii~~~~~---~~~vi~~~~~p~~~~~~-------------~~~~~~~~~ 136 (193)
T cd01835 75 LSVGLNDTARGGR--KRPQLSARAFLFGLNQLLEEAKR---LVPVLVVGPTPVDEAKM-------------PYSNRRIAR 136 (193)
T ss_pred EEecCcccccccC--cccccCHHHHHHHHHHHHHHHhc---CCcEEEEeCCCcccccc-------------chhhHHHHH
Confidence 9999999965321 12245788999999999998875 46799999988754311 023568889
Q ss_pred HHHHHHHHHHhcCCCeeechhHhhhhhhcccccc-cccccCChhHHHHHHHHHHH
Q 026021 158 YAKACIEVAGECGLPVVDLWTKMQQLADWKTAYL-SDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 158 ~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~-~DgiHpn~~G~~~~a~~l~~ 211 (244)
+|+.++++|++++++|+|++..+.....+...+. .||+|||++||++||+.|++
T Consensus 137 ~n~~~~~~a~~~~~~~vd~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~~~~ 191 (193)
T cd01835 137 LETAFAEVCLRRDVPFLDTFTPLLNHPQWRRELAATDGIHPNAAGYGWLAWLVLH 191 (193)
T ss_pred HHHHHHHHHHHcCCCeEeCccchhcCcHHHHhhhccCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999877655544444 59999999999999999875
No 11
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=99.97 E-value=6.7e-30 Score=196.84 Aligned_cols=172 Identities=23% Similarity=0.284 Sum_probs=137.0
Q ss_pred eEEEEcccccccccCC-------CChHHHHHHhhcc---ccceEeeccCCcchHHHHH-HHHhhccccCCCcccccccCC
Q 026021 4 KIYLFGDSITESSFTY-------GGWGASLAHHFSR---TVDVVLRGYSGYNTRWAVK-VMERVLPAANGESESERERVS 72 (244)
Q Consensus 4 ~il~iGDSit~~g~~~-------~~~~~~l~~~~~~---~~~v~n~g~~G~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 72 (244)
||+++|||+| .|++. .+|+.+|++.+.. .+.++|.|++|.++..... .+.... ..+
T Consensus 1 ~i~~~GDSit-~G~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~~~------------~~~ 67 (185)
T cd01832 1 RYVALGDSIT-EGVGDPVPDGGYRGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPAAL------------ALR 67 (185)
T ss_pred CeeEecchhh-cccCCCCCCCccccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHHHH------------hcC
Confidence 6999999999 66643 5799999999843 5899999999999886433 233322 379
Q ss_pred ccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC-ChhhhhcCCCCCCCCCCCccc
Q 026021 73 TIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI-DEEARLKHPYVENPTGLPERT 151 (244)
Q Consensus 73 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 151 (244)
||+|||++|+||... ...++++|.++++++++.++. |+++|+++++++. ...... ...
T Consensus 68 ~d~vii~~G~ND~~~-------~~~~~~~~~~~~~~~i~~i~~--~~~~vil~~~~~~~~~~~~~------------~~~ 126 (185)
T cd01832 68 PDLVTLLAGGNDILR-------PGTDPDTYRADLEEAVRRLRA--AGARVVVFTIPDPAVLEPFR------------RRV 126 (185)
T ss_pred CCEEEEecccccccc-------CCCCHHHHHHHHHHHHHHHHh--CCCEEEEecCCCccccchhH------------HHH
Confidence 999999999999964 245789999999999999994 6889999999887 322111 134
Q ss_pred hHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHH
Q 026021 152 NEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 152 ~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
...+..+|+.++++|++.++.++|++..+.. .....+..||+|||++||++||+.|++
T Consensus 127 ~~~~~~~n~~l~~~a~~~~v~~vd~~~~~~~--~~~~~~~~DgiHpn~~G~~~~A~~i~~ 184 (185)
T cd01832 127 RARLAAYNAVIRAVAARYGAVHVDLWEHPEF--ADPRLWASDRLHPSAAGHARLAALVLA 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEecccCccc--CCccccccCCCCCChhHHHHHHHHHhh
Confidence 5578999999999999999999999887641 112356789999999999999999875
No 12
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=8e-30 Score=196.96 Aligned_cols=179 Identities=23% Similarity=0.278 Sum_probs=141.1
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHH----HHHhhccccCCCcccccccCCccEEEEE
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVK----VMERVLPAANGESESERERVSTIAVAVF 79 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~pd~vii~ 79 (244)
||+|+|||+| .| ..|+..+.+.++ +.+.|+|++|.++..... .++..+. ..+||+|+|+
T Consensus 1 ~iv~~GDS~t-~g---~~~~~~l~~~l~--~~v~N~g~~G~t~~~~~~~~~~~~~~~l~-----------~~~pd~Vii~ 63 (189)
T cd01825 1 RIAQLGDSHI-AG---DFFTDVLRGLLG--VIYDNLGVNGASASLLLKWDAEFLQAQLA-----------ALPPDLVILS 63 (189)
T ss_pred CeeEecCccc-cc---cchhhHHHhhhc--eEEecCccCchhhhhhhccCHHHHHHHHh-----------hCCCCEEEEE
Confidence 6999999999 43 468999998884 899999999998765331 1121223 3789999999
Q ss_pred eccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHH
Q 026021 80 FGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYA 159 (244)
Q Consensus 80 ~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (244)
+|+||... ...+.+.|.++++.+++.+++.+|+++|+++++++........ ....+..+..++
T Consensus 64 ~G~ND~~~-------~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 126 (189)
T cd01825 64 YGTNEAFN-------KQLNASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTGAG----------RWRTPPGLDAVI 126 (189)
T ss_pred CCCccccc-------CCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCCC----------CcccCCcHHHHH
Confidence 99999853 2346899999999999999999999999999998764332100 112345678999
Q ss_pred HHHHHHHHhcCCCeeechhHhhhhhh---c--ccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 160 KACIEVAGECGLPVVDLWTKMQQLAD---W--KTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 160 ~~~~~~a~~~~v~~iD~~~~~~~~~~---~--~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
+.++++|++++++|+|++..+..... + ...+..||+|||++||++||+.+.+.|+++
T Consensus 127 ~~~~~~a~~~~v~~vd~~~~~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~i~~~ 188 (189)
T cd01825 127 AAQRRVAKEEGIAFWDLYAAMGGEGGIWQWAEPGLARKDYVHLTPRGYERLANLLYEALLKA 188 (189)
T ss_pred HHHHHHHHHcCCeEEeHHHHhCCcchhhHhhcccccCCCcccCCcchHHHHHHHHHHHHHhh
Confidence 99999999999999999998865311 1 234678999999999999999999999875
No 13
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.97 E-value=2e-29 Score=191.84 Aligned_cols=168 Identities=20% Similarity=0.279 Sum_probs=137.3
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccC
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGAN 83 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~N 83 (244)
.|+|+|||++ ..|........+ ++++|+|++|.++.....++.+.+. ..+||+|+|++|+|
T Consensus 1 ~i~~~g~s~~------~~w~~~~~~~~~--~~v~N~Gi~G~~~~~~~~~~~~~~~-----------~~~p~~vvi~~G~N 61 (171)
T cd04502 1 GILFYGSSSI------RLWDTLADDLAP--LPVVNRGFGGSTLADCLHYFDRLVL-----------PYQPRRVVLYAGDN 61 (171)
T ss_pred CEEEEcCchh------cchhhHHHhCCC--CceeecCcccchHHHHHHHHHhhhc-----------cCCCCEEEEEEecC
Confidence 3899999999 457665554433 8999999999999998888887766 37999999999999
Q ss_pred CCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHH
Q 026021 84 DACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACI 163 (244)
Q Consensus 84 D~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (244)
|+.. ..+.++|.++++++++.+++.+|+++|++++++|.... ......+..+|+.++
T Consensus 62 D~~~--------~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~~~~---------------~~~~~~~~~~n~~~~ 118 (171)
T cd04502 62 DLAS--------GRTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPAR---------------WALRPKIRRFNALLK 118 (171)
T ss_pred cccC--------CCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEecCCCcc---------------hhhHHHHHHHHHHHH
Confidence 9853 34699999999999999999999999999997664321 012356789999999
Q ss_pred HHHHh-cCCCeeechhHhhhhhh-c-ccccccccccCChhHHHHHHHHHHHHH
Q 026021 164 EVAGE-CGLPVVDLWTKMQQLAD-W-KTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 164 ~~a~~-~~v~~iD~~~~~~~~~~-~-~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
++|++ .++.|+|++..+....+ . ...+..||+|||++||++||+.+.+.|
T Consensus 119 ~~a~~~~~v~~vD~~~~~~~~~~~~~~~~~~~DGlH~n~~Gy~~~a~~l~~~~ 171 (171)
T cd04502 119 ELAETRPNLTYIDVASPMLDADGKPRAELFQEDGLHLNDAGYALWRKVIKPAL 171 (171)
T ss_pred HHHhcCCCeEEEECcHHHhCCCCCcChhhcCCCCCCCCHHHHHHHHHHHHhhC
Confidence 99985 68999999998865443 1 245678999999999999999998764
No 14
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=3.3e-29 Score=190.29 Aligned_cols=166 Identities=25% Similarity=0.406 Sum_probs=139.2
Q ss_pred EEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCC
Q 026021 5 IYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGAND 84 (244)
Q Consensus 5 il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND 84 (244)
|+++|||++ .|. +|.. .+ ..+.++|.|++|.++.....++.+... .+||+|+|++|+||
T Consensus 2 v~~~GdSi~-~~~---~~~~----~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~------------~~pd~vvl~~G~ND 60 (169)
T cd01828 2 LVFLGDSLT-EGG---PWAL----LF-PDVKVANRGISGDTTRGLLARLDEDVA------------LQPKAIFIMIGIND 60 (169)
T ss_pred EEEecchhh-ccC---cHHH----hc-CCCceEecCcccccHHHHHHHHHHHhc------------cCCCEEEEEeeccC
Confidence 899999999 543 4554 23 247899999999999988888877663 78999999999999
Q ss_pred CCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHH
Q 026021 85 ACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIE 164 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (244)
... ..++++|.++++.+++.+++++|+++|++++++|.... .......+..+|+.+++
T Consensus 61 ~~~--------~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~--------------~~~~~~~~~~~n~~l~~ 118 (169)
T cd01828 61 LAQ--------GTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGEL--------------KSIPNEQIEELNRQLAQ 118 (169)
T ss_pred CCC--------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCcc--------------CcCCHHHHHHHHHHHHH
Confidence 952 35789999999999999999999999999999887521 11445688999999999
Q ss_pred HHHhcCCCeeechhHhhhhhh-cccccccccccCChhHHHHHHHHHHHHH
Q 026021 165 VAGECGLPVVDLWTKMQQLAD-WKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 165 ~a~~~~v~~iD~~~~~~~~~~-~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
+|++.++.|+|++..+....+ ....+..||+|||++||++||+.|++.|
T Consensus 119 ~a~~~~~~~id~~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~i~~~~ 168 (169)
T cd01828 119 LAQQEGVTFLDLWAVFTNADGDLKNEFTTDGLHLNAKGYAVWAAALQPYL 168 (169)
T ss_pred HHHHCCCEEEechhhhcCCCCCcchhhccCccccCHHHHHHHHHHHHHhh
Confidence 999999999999998865443 4456889999999999999999999987
No 15
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=99.97 E-value=4.9e-29 Score=190.62 Aligned_cols=168 Identities=26% Similarity=0.356 Sum_probs=135.9
Q ss_pred eEEEEcccccccccC---CCChHHHHHHhh---ccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEE
Q 026021 4 KIYLFGDSITESSFT---YGGWGASLAHHF---SRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVA 77 (244)
Q Consensus 4 ~il~iGDSit~~g~~---~~~~~~~l~~~~---~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vi 77 (244)
||+++|||+| .|++ ..+|+..+++.+ ...+.++|.|++|.++.....++++.+. ..+||+|+
T Consensus 2 ~i~~~GDSit-~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~-----------~~~pd~v~ 69 (177)
T cd01822 2 TILALGDSLT-AGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLA-----------QHKPDLVI 69 (177)
T ss_pred eEEEEccccc-cCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHH-----------hcCCCEEE
Confidence 7999999999 6664 358999998877 3458999999999999998888887776 36999999
Q ss_pred EEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHH
Q 026021 78 VFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGA 157 (244)
Q Consensus 78 i~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (244)
|++|+||... ..+.++|.++++++++.++++ +++|++++++..... .......
T Consensus 70 i~~G~ND~~~--------~~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~~~~~-----------------~~~~~~~ 122 (177)
T cd01822 70 LELGGNDGLR--------GIPPDQTRANLRQMIETAQAR--GAPVLLVGMQAPPNY-----------------GPRYTRR 122 (177)
T ss_pred EeccCccccc--------CCCHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCcc-----------------chHHHHH
Confidence 9999999853 357899999999999999997 567888876421100 0124678
Q ss_pred HHHHHHHHHHhcCCCeeechh-HhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 158 YAKACIEVAGECGLPVVDLWT-KMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 158 ~~~~~~~~a~~~~v~~iD~~~-~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
+++.++++|+++++.++|.+. .+.. ....+..||+|||++||++||+.|++.|
T Consensus 123 ~~~~~~~~a~~~~~~~~d~~~~~~~~---~~~~~~~DgvHpn~~G~~~~a~~i~~~i 176 (177)
T cd01822 123 FAAIYPELAEEYGVPLVPFFLEGVAG---DPELMQSDGIHPNAEGQPIIAENVWPAL 176 (177)
T ss_pred HHHHHHHHHHHcCCcEechHHhhhhh---ChhhhCCCCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999753 2222 2234789999999999999999999987
No 16
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=1.9e-29 Score=195.03 Aligned_cols=182 Identities=26% Similarity=0.343 Sum_probs=142.5
Q ss_pred CeEEEEcccccccccCCCChHH----HHHHhhc-cccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEE
Q 026021 3 PKIYLFGDSITESSFTYGGWGA----SLAHHFS-RTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVA 77 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~----~l~~~~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vi 77 (244)
.||+++|||+| .|. +|.. .|.+.+. ..+.++|.|++|.++..+..++.+.+. ..+||+|+
T Consensus 2 ~~v~~~GDSit-~g~---~~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~-----------~~~~d~v~ 66 (191)
T cd01834 2 DRIVFIGNSIT-DRG---GYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVL-----------PAKPDVVS 66 (191)
T ss_pred CEEEEeCCChh-hcc---ccHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhcccc-----------cCCCCEEE
Confidence 48999999999 444 4544 4444442 348999999999999887756655544 37899999
Q ss_pred EEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHH
Q 026021 78 VFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGA 157 (244)
Q Consensus 78 i~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (244)
|++|+||...... ...++++|.++++++++.+++..|+++|+++++++........ ......+..+..
T Consensus 67 l~~G~ND~~~~~~----~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~--------~~~~~~~~~~~~ 134 (191)
T cd01834 67 IMFGINDSFRGFD----DPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPL--------PDGAEYNANLAA 134 (191)
T ss_pred EEeecchHhhccc----ccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCC--------CChHHHHHHHHH
Confidence 9999999964210 1457999999999999999977789999999988764331100 112356678999
Q ss_pred HHHHHHHHHHhcCCCeeechhHhhhhhhc--ccccccccccCChhHHHHHHHHHHH
Q 026021 158 YAKACIEVAGECGLPVVDLWTKMQQLADW--KTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 158 ~~~~~~~~a~~~~v~~iD~~~~~~~~~~~--~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
||+.++++|++.++.++|++..+...... ...+..||+|||++||++||+.+++
T Consensus 135 ~n~~l~~~a~~~~~~~iD~~~~~~~~~~~~~~~~~~~D~~Hpn~~G~~~~a~~~~~ 190 (191)
T cd01834 135 YADAVRELAAENGVAFVDLFTPMKEAFQKAGEAVLTVDGVHPNEAGHRALARLWLE 190 (191)
T ss_pred HHHHHHHHHHHcCCeEEecHHHHHHHHHhCCCccccCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999775543 4568899999999999999999876
No 17
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=99.97 E-value=4.8e-29 Score=196.41 Aligned_cols=179 Identities=19% Similarity=0.246 Sum_probs=138.3
Q ss_pred CeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 3 PKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
.+|+|+|||+| .|++..+ .....+.+. .+.++|+|++|.++...+.++...... ..+||+|+|++|+
T Consensus 33 ~~iv~lGDSit-~g~~~~~-~~~~~~~~~-~~~v~N~Gi~G~tt~~~l~r~~~~~l~----------~~~pd~VvI~~G~ 99 (214)
T cd01820 33 PDVVFIGDSIT-QNWEFTG-LEVWRELYA-PLHALNFGIGGDRTQNVLWRLENGELD----------GVNPKVVVLLIGT 99 (214)
T ss_pred CCEEEECchHh-hhhcccc-hHHHHHHcC-cCCeEeeeeccccHhHHHHHHhcCCcc----------CCCCCEEEEEecc
Confidence 38999999999 6665432 112222232 478999999999999887777642211 2689999999999
Q ss_pred CCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHH
Q 026021 83 NDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKAC 162 (244)
Q Consensus 83 ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (244)
||+.. ..+.++|.++++.+++.+++++|+++|++++++|.... .......+..+|+.+
T Consensus 100 ND~~~--------~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~--------------~~~~~~~~~~~n~~l 157 (214)
T cd01820 100 NNIGH--------TTTAEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQN--------------PNPLRERNAQVNRLL 157 (214)
T ss_pred cccCC--------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCC--------------chhHHHHHHHHHHHH
Confidence 99953 23799999999999999999999999999998886532 012346778999999
Q ss_pred HHHHHh-cCCCeeechhHhhhhhh-cccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 163 IEVAGE-CGLPVVDLWTKMQQLAD-WKTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 163 ~~~a~~-~~v~~iD~~~~~~~~~~-~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
++.|.+ .++.|+|++..+....+ ....+..||+|||++||++||+.+.+.|++.
T Consensus 158 ~~~~~~~~~v~~vd~~~~~~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~l~~~l~~~ 213 (214)
T cd01820 158 AVRYDGLPNVTFLDIDKGFVQSDGTISHHDMPDYLHLTAAGYRKWADALHPTLARL 213 (214)
T ss_pred HHHhcCCCCEEEEeCchhhcccCCCcCHhhcCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 888765 59999999998854432 2334568999999999999999999999763
No 18
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=1.8e-28 Score=187.58 Aligned_cols=171 Identities=20% Similarity=0.214 Sum_probs=130.7
Q ss_pred eEEEEcccccccccCC----CChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEE
Q 026021 4 KIYLFGDSITESSFTY----GGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVF 79 (244)
Q Consensus 4 ~il~iGDSit~~g~~~----~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~ 79 (244)
||+|+||||| .|++. .+|...+++.++ ++++|+|++|.++... .+.+.+. ..+||+|+|+
T Consensus 1 ~iv~~GDSit-~G~g~~~~~~~~~~~~~~~~~--~~v~N~g~~G~~~~~~--~~~~~~~-----------~~~pd~vii~ 64 (177)
T cd01844 1 PWVFYGTSIS-QGACASRPGMAWTAILARRLG--LEVINLGFSGNARLEP--EVAELLR-----------DVPADLYIID 64 (177)
T ss_pred CEEEEeCchh-cCcCCCCCCCcHHHHHHHHhC--CCeEEeeecccccchH--HHHHHHH-----------hcCCCEEEEE
Confidence 6999999999 66642 589999999886 8899999999865432 2344444 3789999999
Q ss_pred eccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHH
Q 026021 80 FGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYA 159 (244)
Q Consensus 80 ~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (244)
+|+||... ..+|.++++.+++.+++.+|+++|+++++++........ ....+.++....++
T Consensus 65 ~G~ND~~~-----------~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 125 (177)
T cd01844 65 CGPNIVGA-----------EAMVRERLGPLVKGLRETHPDTPILLVSPRYCPDAELTP--------GRGKLTLAVRRALR 125 (177)
T ss_pred eccCCCcc-----------HHHHHHHHHHHHHHHHHHCcCCCEEEEecCCCCccccCc--------chhHHHHHHHHHHH
Confidence 99999842 128999999999999999999999999988764321110 11224555667777
Q ss_pred HHHHHHHHh--cCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 160 KACIEVAGE--CGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 160 ~~~~~~a~~--~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
+.+++++++ .++.|+|.+..+... ..+..||+|||++||++||+.+++.|
T Consensus 126 ~~~~~~~~~~~~~v~~id~~~~~~~~----~~~~~DglHpn~~Gy~~~a~~l~~~~ 177 (177)
T cd01844 126 EAFEKLRADGVPNLYYLDGEELLGPD----GEALVDGIHPTDLGHMRYADRFEPVL 177 (177)
T ss_pred HHHHHHHhcCCCCEEEecchhhcCCC----CCCCCCCCCCCHHHHHHHHHHHhhcC
Confidence 777776653 368999998766543 24678999999999999999998764
No 19
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=7.3e-28 Score=180.70 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=129.4
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccC
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGAN 83 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~N 83 (244)
+|+++|||+| .| ++.|+|++|.++......+.+... ..+||+|+|++|+|
T Consensus 2 ~~~~~Gds~~-~g------------------~~~n~g~~G~~~~~~~~~~~~~~~-----------~~~pd~vvi~~G~N 51 (157)
T cd01833 2 RIMPLGDSIT-WG------------------DKDHEGHSGYLIDQIAAAAADWVL-----------AAKPDVVLLHLGTN 51 (157)
T ss_pred ceeecCCcee-ec------------------CCCCCCCCCccHHHHHHHhhhccc-----------cCCCCEEEEeccCc
Confidence 7999999999 43 688999999999998888877666 48999999999999
Q ss_pred CCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHH
Q 026021 84 DACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACI 163 (244)
Q Consensus 84 D~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (244)
|... ..+.++|.++++.+++.++++.|+++|++++++|..... .+.....+|+.++
T Consensus 52 D~~~--------~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~----------------~~~~~~~~n~~l~ 107 (157)
T cd01833 52 DLVL--------NRDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDAS----------------GNARIAEYNAAIP 107 (157)
T ss_pred cccc--------CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc----------------hhHHHHHHHHHHH
Confidence 9964 257899999999999999999999999999987764331 1457889999999
Q ss_pred HHHHhc-----CCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 164 EVAGEC-----GLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 164 ~~a~~~-----~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
++|+++ ++.|+|++..+.. ..+..||+|||++||++||+.++++|
T Consensus 108 ~~~~~~~~~~~~v~~vd~~~~~~~-----~~~~~Dg~Hpn~~Gy~~~a~~~~~~~ 157 (157)
T cd01833 108 GVVADLRTAGSPVVLVDMSTGYTT-----ADDLYDGLHPNDQGYKKMADAWYEAL 157 (157)
T ss_pred HHHHHHhcCCCCEEEEecCCCCCC-----cccccCCCCCchHHHHHHHHHHHhhC
Confidence 999883 6899999887754 35789999999999999999998864
No 20
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=99.95 E-value=5.1e-28 Score=189.23 Aligned_cols=187 Identities=19% Similarity=0.172 Sum_probs=137.0
Q ss_pred eEEEEcccccccccCC---CCh-HHHHHHhh----ccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccE
Q 026021 4 KIYLFGDSITESSFTY---GGW-GASLAHHF----SRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIA 75 (244)
Q Consensus 4 ~il~iGDSit~~g~~~---~~~-~~~l~~~~----~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~ 75 (244)
+|+++|||+| .|++. .+| ...+.+.+ ...+.+.|.|++|.++.....++++...... ..+||+
T Consensus 1 ~i~~~GDSit-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~~G~t~~~~~~r~~~~~~~~~--------~~~~d~ 71 (204)
T cd04506 1 KIVALGDSLT-EGVGDETGKGGYVGRLDKLIETKTVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKE--------LKKADV 71 (204)
T ss_pred CEeEEecccc-CccCCCCCCCChHHHHHHHHhhhcCCceEEEeecccchhHHHHHHHHhcchhhhh--------cccCCE
Confidence 5899999999 77652 344 44444444 3458999999999999988877765432100 368999
Q ss_pred EEEEeccCCCCCCCCC------CCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC-CCChhhhhcCCCCCCCCCCC
Q 026021 76 VAVFFGANDACLPDRC------GAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP-PIDEEARLKHPYVENPTGLP 148 (244)
Q Consensus 76 vii~~G~ND~~~~~~~------~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (244)
|+|++|+||+...... ......+.++|+++++.+|+.+++++|+++|++++++ |..... ...
T Consensus 72 V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~~~-----------~~~ 140 (204)
T cd04506 72 ITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYVYF-----------PNI 140 (204)
T ss_pred EEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcccccc-----------chH
Confidence 9999999998532100 0001124678999999999999999999999999753 321110 001
Q ss_pred ccchHHHHHHHHHHHHHHHhcC-CCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHH
Q 026021 149 ERTNEAAGAYAKACIEVAGECG-LPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 149 ~~~~~~~~~~~~~~~~~a~~~~-v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
...+..+..||+.++++|++++ +.++|++..+.... ....+..||+|||++||++||+.+.+
T Consensus 141 ~~~~~~~~~~n~~~~~~a~~~~~v~~vd~~~~~~~~~-~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 203 (204)
T cd04506 141 TEINDIVNDWNEASQKLASQYKNAYFVPIFDLFSDGQ-NKYLLTSDHFHPNDKGYQLIADRVFK 203 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEehHHhhcCCc-ccccccccCcCCCHHHHHHHHHHHHh
Confidence 1346788999999999999987 99999999887653 23357789999999999999999875
No 21
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.95 E-value=4.3e-27 Score=183.98 Aligned_cols=181 Identities=20% Similarity=0.196 Sum_probs=129.4
Q ss_pred eEEEEcccccccccC-----CCChHHHHHHhh-----ccccceEeeccCCcchH------HHHHHHHhhccccCCCcccc
Q 026021 4 KIYLFGDSITESSFT-----YGGWGASLAHHF-----SRTVDVVLRGYSGYNTR------WAVKVMERVLPAANGESESE 67 (244)
Q Consensus 4 ~il~iGDSit~~g~~-----~~~~~~~l~~~~-----~~~~~v~n~g~~G~~~~------~~~~~l~~~~~~~~~~~~~~ 67 (244)
+|+|+||||| .|++ ..+|+.++++.+ ..+++++|+|++|.++. ..+.++++.+..
T Consensus 1 ~iv~~GDSiT-~G~~~~~~~~~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~-------- 71 (204)
T cd01830 1 SVVALGDSIT-DGRGSTPDANNRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS-------- 71 (204)
T ss_pred CEEEEecccc-cCCCCCCCCCCcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc--------
Confidence 4899999999 5653 258999887655 34589999999999873 667777655542
Q ss_pred cccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCC
Q 026021 68 RERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGL 147 (244)
Q Consensus 68 ~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
..+||+|+|++|+||+.........+..++++|.++++.+++.++++ +++|++++++|+......
T Consensus 72 --~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~--~~~vil~t~~P~~~~~~~----------- 136 (204)
T cd01830 72 --QPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHAR--GIKVIGATITPFEGSGYY----------- 136 (204)
T ss_pred --CCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHC--CCeEEEecCCCCCCCCCC-----------
Confidence 25799999999999996543222234568999999999999999997 578999998887532110
Q ss_pred CccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhc----ccccccccccCChhHHHHHHHHHH
Q 026021 148 PERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADW----KTAYLSDGLHLNETGNRVVFEEVV 210 (244)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~----~~~~~~DgiHpn~~G~~~~a~~l~ 210 (244)
..........+|+.+++.+. + ..++|++..+...... ..++..||+|||++||++||+.+.
T Consensus 137 ~~~~~~~~~~~n~~~~~~~~-~-~~~vD~~~~~~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~A~~i~ 201 (204)
T cd01830 137 TPAREATRQAVNEWIRTSGA-F-DAVVDFDAALRDPADPSRLRPAYDSGDHLHPNDAGYQAMADAVD 201 (204)
T ss_pred CHHHHHHHHHHHHHHHccCC-C-CeeeEhHHhhcCCCCchhcccccCCCCCCCCCHHHHHHHHHhcC
Confidence 01122233456666655332 2 3489999988664321 234568999999999999999864
No 22
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.94 E-value=6.8e-26 Score=176.62 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=129.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhc--cccceEeeccCCcchH-----HHHHHHHhhccccCCCcccccccCCccEE
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFS--RTVDVVLRGYSGYNTR-----WAVKVMERVLPAANGESESERERVSTIAV 76 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~--~~~~v~n~g~~G~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~pd~v 76 (244)
||+++|||+| .| |...+.+.+. ..+.++|.+++|.+.. .....+...+. ..+||+|
T Consensus 1 ril~iGDS~~-~g-----~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~-----------~~~pd~v 63 (200)
T cd01829 1 RVLVIGDSLA-QG-----LAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIA-----------EEKPDVV 63 (200)
T ss_pred CEEEEechHH-HH-----HHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHh-----------cCCCCEE
Confidence 6999999999 43 4444544442 2378999999876521 12234555554 3899999
Q ss_pred EEEeccCCCCCCCCCCC--Cc--ccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccch
Q 026021 77 AVFFGANDACLPDRCGA--FQ--HVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTN 152 (244)
Q Consensus 77 ii~~G~ND~~~~~~~~~--~~--~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (244)
+|++|+||+......+. .. ..-.+.|.++++.+++.+++ ++++|+++++||+... ..+
T Consensus 64 ii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~--~~~~vili~~pp~~~~----------------~~~ 125 (200)
T cd01829 64 VVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARA--KGVPVIWVGLPAMRSP----------------KLS 125 (200)
T ss_pred EEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHh--CCCcEEEEcCCCCCCh----------------hHh
Confidence 99999999864221100 00 01146889999999999986 4788999999887543 234
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcc------------cccccccccCChhHHHHHHHHHHHHHhh
Q 026021 153 EAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWK------------TAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~------------~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
..+..+|+.++++|++.++.|+|++..+....++. ..+..||+|||++||+.||+.+.+.|++
T Consensus 126 ~~~~~~~~~~~~~a~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DgvH~~~~G~~~~a~~i~~~l~~ 200 (200)
T cd01829 126 ADMVYLNSLYREEVAKAGGEFVDVWDGFVDENGRFTYSGTDVNGKKVRLRTNDGIHFTAAGGRKLAFYVEKLIRR 200 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEhhHhhcCCCCCeeeeccCCCCcEEEeecCCCceECHHHHHHHHHHHHHHhhC
Confidence 57789999999999999999999999987654431 2346799999999999999999999864
No 23
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=99.92 E-value=2.4e-24 Score=163.54 Aligned_cols=153 Identities=21% Similarity=0.291 Sum_probs=113.2
Q ss_pred eEEEEcccccccccCC----------------CChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccc
Q 026021 4 KIYLFGDSITESSFTY----------------GGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESE 67 (244)
Q Consensus 4 ~il~iGDSit~~g~~~----------------~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~ 67 (244)
+|+|+|||+| .|++. .+|+..+++.++ ..+.+.+.+|.+
T Consensus 1 ~i~~iGDSit-~G~~~~~~~~~~~~~~~~~~~~~~~~~la~~l~--~~~~~~~~~g~~---------------------- 55 (169)
T cd01831 1 KIEFIGDSIT-CGYGVTGKSRCDFSAATEDPSLSYAALLARALN--AEYSIIAYSGIG---------------------- 55 (169)
T ss_pred CEEEEecccc-ccCccCCCCCCCCcccccchhhhHHHHHHHHhC--CcEEEEEecCCC----------------------
Confidence 6899999999 67652 368999999987 456666777754
Q ss_pred cccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCC
Q 026021 68 RERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGL 147 (244)
Q Consensus 68 ~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
||+|||++|+||.... ...+.++|..+++++++.++++.|+++|++++++......
T Consensus 56 -----pd~vii~~G~ND~~~~------~~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~~~~~~~~~------------- 111 (169)
T cd01831 56 -----PDLVVINLGTNDFSTG------NNPPGEDFTNAYVEFIEELRKRYPDAPIVLMLGPMLFGPY------------- 111 (169)
T ss_pred -----CCEEEEECCcCCCCCC------CCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCcccccc-------------
Confidence 7999999999999532 1247899999999999999999999999888766543211
Q ss_pred CccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHh
Q 026021 148 PERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLK 214 (244)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~ 214 (244)
..++....+++.+++.+. .++.|+|++..+. ..+..||+|||++||++||+.+++.|+
T Consensus 112 --~~~~~~~~~~~~~~~~~~-~~v~~id~~~~~~------~~~~~DgiHPn~~G~~~iA~~l~~~i~ 169 (169)
T cd01831 112 --GTEEEIKRVAEAFKDQKS-KKVHYFDTPGILQ------HNDIGCDWHPTVAGHQKIAKHLLPAIK 169 (169)
T ss_pred --ccHHHHHHHHHHHHhcCC-ceEEEEecccccC------CCCcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 002333344444433322 3599999875443 235689999999999999999999874
No 24
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=99.92 E-value=7.1e-25 Score=177.61 Aligned_cols=198 Identities=17% Similarity=0.166 Sum_probs=141.8
Q ss_pred eEEEEcccccccccCC---------------CChHHHHHHhhcc-ccceEeeccCCcchHHHHHHHH----hhccccCCC
Q 026021 4 KIYLFGDSITESSFTY---------------GGWGASLAHHFSR-TVDVVLRGYSGYNTRWAVKVME----RVLPAANGE 63 (244)
Q Consensus 4 ~il~iGDSit~~g~~~---------------~~~~~~l~~~~~~-~~~v~n~g~~G~~~~~~~~~l~----~~~~~~~~~ 63 (244)
+++++|||++ .|.+. .+|+.++++.+.. .+++.|.|.+|.++.......+ ......
T Consensus 2 ~~v~iGDS~~-~G~g~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~n~a~sGa~~~~~~~~~~~~~~~~~~~l--- 77 (259)
T cd01823 2 RYVALGDSYA-AGPGAGPLDDGPDDGCRRSSNSYPTLLARALGDETLSFTDVACSGATTTDGIEPQQGGIAPQAGAL--- 77 (259)
T ss_pred CEEEecchhh-cCCCCCcccCCCCCCCccCCccHHHHHHHHcCCCCceeeeeeecCcccccccccccCCCchhhccc---
Confidence 7999999999 77652 1699999998864 3789999999999987754321 111111
Q ss_pred cccccccCCccEEEEEeccCCCCCCCC-------------------CCCCcccChhHHHHHHHHHHHHHHhhCCCceEEE
Q 026021 64 SESERERVSTIAVAVFFGANDACLPDR-------------------CGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLL 124 (244)
Q Consensus 64 ~~~~~~~~~pd~vii~~G~ND~~~~~~-------------------~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil 124 (244)
...+|+|+|++|+||+..... .........++|.++|+.+++.+++..|+++|++
T Consensus 78 ------~~~~dlV~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~ 151 (259)
T cd01823 78 ------DPDTDLVTITIGGNDLGFADVVKACILTGGGSSLAQEKGAADGARDAALDEVGARLKAVLDRIRERAPNARVVV 151 (259)
T ss_pred ------CCCCCEEEEEECccccchHHHHHHHhhccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 367999999999999854210 0001124578999999999999999999999999
Q ss_pred EcCCCCChhhhhcCCC-----CCCCCCCCccchHHHHHHHHHHHHHHHhcC---CCeeechhHhhhhhh-----------
Q 026021 125 ITPPPIDEEARLKHPY-----VENPTGLPERTNEAAGAYAKACIEVAGECG---LPVVDLWTKMQQLAD----------- 185 (244)
Q Consensus 125 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---v~~iD~~~~~~~~~~----------- 185 (244)
++.|++.......... ...........++.+..+|+.++++|++.+ +.|||++..+..+..
T Consensus 152 ~gyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~a~~~~~~~v~fvD~~~~f~~~~~~~~~~~~~~~~ 231 (259)
T cd01823 152 VGYPRLFPPDGGDCDKSCSPGTPLTPADRPELNQLVDKLNALIRRAAADAGDYKVRFVDTDAPFAGHRACSPDPWSRSVL 231 (259)
T ss_pred ecccccccCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEEECCCCcCCCccccCCCcccccc
Confidence 9977654321111000 000001112456778899999999999999 999999998865421
Q ss_pred -cccccccccccCChhHHHHHHHHHHH
Q 026021 186 -WKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 186 -~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
....+..|++|||.+||++||+.|..
T Consensus 232 ~~~~~~~~d~~HPn~~G~~~~A~~i~~ 258 (259)
T cd01823 232 DLLPTRQGKPFHPNAAGHRAIADLIVD 258 (259)
T ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 11235689999999999999999875
No 25
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=99.92 E-value=2.3e-24 Score=164.01 Aligned_cols=175 Identities=26% Similarity=0.431 Sum_probs=134.0
Q ss_pred EEEcccccccccC---CCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 6 YLFGDSITESSFT---YGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 6 l~iGDSit~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
||+|||+| .|.+ ..+|...++...+..+.+.|.|.+|.++.+....+.+.+.... ..+||+|||++|+
T Consensus 1 v~~GDS~t-~g~~~~~~~~~~~~l~~~~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~~~--------~~~~d~vvi~~G~ 71 (179)
T PF13472_consen 1 VFLGDSIT-AGYGAPNNGSYPDRLAERPGRGIEVYNLGVSGATSSDFLARLQRDVLRFK--------DPKPDLVVISFGT 71 (179)
T ss_dssp EEEESHHH-HTTTTSSCTSHHHHHHHHHTCCEEEEEEE-TT-BHHHHHHHHHHHCHHHC--------GTTCSEEEEE--H
T ss_pred CEEccccc-cCCCCCCCCCHHHHHHHhhCCCcEEEEEeecCccHhHHHHHHHHHHhhhc--------cCCCCEEEEEccc
Confidence 69999999 6654 2689999999755668999999999999998877776543100 4899999999999
Q ss_pred CCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHH
Q 026021 83 NDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKAC 162 (244)
Q Consensus 83 ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (244)
||.... .....+.++|..+++++++.++... +|+++++++......... ..........+++.+
T Consensus 72 ND~~~~----~~~~~~~~~~~~~l~~~i~~~~~~~---~vi~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 135 (179)
T PF13472_consen 72 NDVLNG----DENDTSPEQYEQNLRRIIEQLRPHG---PVILVSPPPRGPDPRDPK---------QDYLNRRIDRYNQAI 135 (179)
T ss_dssp HHHCTC----TTCHHHHHHHHHHHHHHHHHHHTTS---EEEEEE-SCSSSSTTTTH---------TTCHHHHHHHHHHHH
T ss_pred cccccc----ccccccHHHHHHHHHHHHHhhcccC---cEEEecCCCccccccccc---------chhhhhhHHHHHHHH
Confidence 999753 1234568899999999999998864 799999887765432210 124567889999999
Q ss_pred HHHHHhcCCCeeechhHhhhhhh-cccccccccccCChhHHHHH
Q 026021 163 IEVAGECGLPVVDLWTKMQQLAD-WKTAYLSDGLHLNETGNRVV 205 (244)
Q Consensus 163 ~~~a~~~~v~~iD~~~~~~~~~~-~~~~~~~DgiHpn~~G~~~~ 205 (244)
+++|+++++.|+|++..+..... ....+..||+|||++||++|
T Consensus 136 ~~~a~~~~~~~id~~~~~~~~~~~~~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 136 RELAKKYGVPFIDLFDAFDDHDGWFPKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp HHHHHHCTEEEEEHHHHHBTTTSCBHTCTBTTSSSBBHHHHHHH
T ss_pred HHHHHHcCCEEEECHHHHccccccchhhcCCCCCCcCHHHhCcC
Confidence 99999999999999999876443 23467899999999999986
No 26
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=99.92 E-value=7.3e-24 Score=157.67 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=118.5
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccC
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGAN 83 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~N 83 (244)
.|+++|||++ .++...+.+.++. -+++ |..|.++.....++++.... ...||+|||++|+|
T Consensus 1 ~v~~~GDSv~------~~~~~~~~~~~p~--~~i~-a~~g~~~~~~~~~l~~~~~~----------~~~~d~vvi~lGtN 61 (150)
T cd01840 1 DITAIGDSVM------LDSSPALQEIFPN--IQID-AKVGRQMSEAPDLIRQLKDS----------GKLRKTVVIGLGTN 61 (150)
T ss_pred CeeEEeehHH------HchHHHHHHHCCC--CEEE-eeecccHHHHHHHHHHHHHc----------CCCCCeEEEEecCC
Confidence 4789999999 4577888888864 2455 66667778888888887763 36899999999999
Q ss_pred CCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHH
Q 026021 84 DACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACI 163 (244)
Q Consensus 84 D~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (244)
|.. +.++++++++.+. ++++|+++++++. . ....++|+.++
T Consensus 62 d~~---------------~~~nl~~ii~~~~---~~~~ivlv~~~~~--~-------------------~~~~~~n~~~~ 102 (150)
T cd01840 62 GPF---------------TKDQLDELLDALG---PDRQVYLVNPHVP--R-------------------PWEPDVNAYLL 102 (150)
T ss_pred CCC---------------CHHHHHHHHHHcC---CCCEEEEEECCCC--c-------------------chHHHHHHHHH
Confidence 983 3789999999884 4678999988621 0 12468999999
Q ss_pred HHHHhc-CCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 164 EVAGEC-GLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 164 ~~a~~~-~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
++|+++ ++.++|++..+.... .++..||+|||++||++||+.+.+.|
T Consensus 103 ~~a~~~~~v~~id~~~~~~~~~---~~~~~DgiHpn~~G~~~~a~~i~~ai 150 (150)
T cd01840 103 DAAKKYKNVTIIDWYKAAKGHP---DWFYGDGVHPNPAGAKLYAALIAKAI 150 (150)
T ss_pred HHHHHCCCcEEecHHHHhcccc---hhhcCCCCCCChhhHHHHHHHHHHhC
Confidence 999998 999999988765433 35778999999999999999998864
No 27
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=99.90 E-value=3.2e-23 Score=154.71 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=88.8
Q ss_pred CeEEEEcccccccccC---CCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEE
Q 026021 3 PKIYLFGDSITESSFT---YGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVF 79 (244)
Q Consensus 3 ~~il~iGDSit~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~ 79 (244)
++++++|+|||++++. ...|+..+++.++ ++++|.|++|..-. ...+.+.+.+ .++|++++.
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~--~~~iNLGfsG~~~l--e~~~a~~ia~-----------~~a~~~~ld 66 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAILARRLG--LDVINLGFSGNGKL--EPEVADLIAE-----------IDADLIVLD 66 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT---EEEEEE-TCCCS----HHHHHHHHH-----------S--SEEEEE
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHHHHHcC--CCeEeeeecCcccc--CHHHHHHHhc-----------CCCCEEEEE
Confidence 5899999999976654 2589999999998 89999999996643 2234444442 677999999
Q ss_pred eccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHH
Q 026021 80 FGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYA 159 (244)
Q Consensus 80 ~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (244)
+|.| . +.++|.+++..+|+.+|+..|+++|+++++.+......+. ........++
T Consensus 67 ~~~N-~------------~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~------------~~~~~~~~~~ 121 (178)
T PF14606_consen 67 CGPN-M------------SPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN------------SRGETVEEFR 121 (178)
T ss_dssp ESHH-C------------CTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--------------TTS--HHHHH
T ss_pred eecC-C------------CHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc------------hHHHHHHHHH
Confidence 9999 2 5789999999999999999999999999987654442222 2223455566
Q ss_pred HHHHHHHHhc------CCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHh
Q 026021 160 KACIEVAGEC------GLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLK 214 (244)
Q Consensus 160 ~~~~~~a~~~------~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~ 214 (244)
+.++++.++. ++-|++-...+... ...+.||+|||+.|+..||+.+.+.|+
T Consensus 122 ~~~r~~v~~l~~~g~~nl~~l~g~~llg~d----~e~tvDgvHP~DlG~~~~a~~l~~~ir 178 (178)
T PF14606_consen 122 EALREAVEQLRKEGDKNLYYLDGEELLGDD----HEATVDGVHPNDLGMMRMADALEPVIR 178 (178)
T ss_dssp HHHHHHHHHHHHTT-TTEEEE-HHHCS----------------------------------
T ss_pred HHHHHHHHHHHHcCCCcEEEeCchhhcCcc----cccccccccccccccccccccccccCC
Confidence 6665555543 56677765555433 257899999999999999999998874
No 28
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.88 E-value=1.4e-21 Score=148.61 Aligned_cols=173 Identities=29% Similarity=0.372 Sum_probs=133.0
Q ss_pred EEEEcccccccccCCC----ChHH---HHHHhhccccceEeeccCCcchHHHHHHH--HhhccccCCCcccccccCCccE
Q 026021 5 IYLFGDSITESSFTYG----GWGA---SLAHHFSRTVDVVLRGYSGYNTRWAVKVM--ERVLPAANGESESERERVSTIA 75 (244)
Q Consensus 5 il~iGDSit~~g~~~~----~~~~---~l~~~~~~~~~v~n~g~~G~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~pd~ 75 (244)
|+++|||++ .|.+.. .+.. .........+.+.|.|.+|.++......+ .+... ..+||+
T Consensus 1 i~~~GDS~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~-----------~~~~d~ 68 (187)
T cd00229 1 ILVIGDSIT-AGYGASSGSTFYSLLLYLLLLAGGPGVEVINLGVSGATTADALRRLGLRLALL-----------KDKPDL 68 (187)
T ss_pred Ceeeccccc-cccCCCCCCCCccchhhHHHhccCCCceEEeecccchhHHHHHhhcchhhhhc-----------cCCCCE
Confidence 689999999 554321 1111 11122233478999999999988776655 23333 489999
Q ss_pred EEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHH
Q 026021 76 VAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAA 155 (244)
Q Consensus 76 vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (244)
|+|++|.||..... ..+...+...++++++.+++..|+++|+++++++...... ......
T Consensus 69 vil~~G~ND~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~--------------~~~~~~ 128 (187)
T cd00229 69 VIIELGTNDLGRGG------DTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREG--------------LLGRAL 128 (187)
T ss_pred EEEEeccccccccc------ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCch--------------hhHHHH
Confidence 99999999996421 2468899999999999999988999999999998764421 233567
Q ss_pred HHHHHHHHHHHHhcC----CCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHH
Q 026021 156 GAYAKACIEVAGECG----LPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 156 ~~~~~~~~~~a~~~~----v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
..+++.+++++++++ +.++|++..+... ....+..||+|||++||+++|+.+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~Dg~H~~~~G~~~~a~~i~~ 186 (187)
T cd00229 129 PRYNEAIKAVAAENPAPSGVDLVDLAALLGDE--DKSLYSPDGIHPNPAGHKLIAEALAS 186 (187)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEhhhhhCCC--ccccccCCCCCCchhhHHHHHHHHhc
Confidence 899999999999998 9999999887654 23468899999999999999999875
No 29
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=99.86 E-value=2e-20 Score=147.58 Aligned_cols=184 Identities=24% Similarity=0.362 Sum_probs=137.2
Q ss_pred eEEEEcccccccccCC-----CChHHHHHHhhc-cccc----eEeeccCCcchHHHHHHHHhhccccCCCcccccccCCc
Q 026021 4 KIYLFGDSITESSFTY-----GGWGASLAHHFS-RTVD----VVLRGYSGYNTRWAVKVMERVLPAANGESESERERVST 73 (244)
Q Consensus 4 ~il~iGDSit~~g~~~-----~~~~~~l~~~~~-~~~~----v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p 73 (244)
+|+++|||+| .|+.. .+|+..+...+. ..+. +.|.+.+|.++...+.+++...... ..+
T Consensus 10 ~i~~~GDSlt-~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~~~s~~~~~~g~~rl~~~l~~~----------~~~ 78 (216)
T COG2755 10 TVLALGDSLT-AGYGPANRLEGGWVQVLAKRLVAKGVAVINLVLNGGISGDTSAGGLQRLPALLKQH----------LPP 78 (216)
T ss_pred eEEEeccchh-ccccCCCccccCchHHHHHHhhccCCeeeeeeecceeecCcchhHHHHhHHHHhcc----------CCC
Confidence 6999999999 77653 389999999886 3333 5677788888888877888777741 239
Q ss_pred cEEEEEeccCCCCCCCCCCCCcccCh--hHHHHHHHHHHHHHHhhCCC-----ceEEEE-cCCCCChhhhhcCCCCCCCC
Q 026021 74 IAVAVFFGANDACLPDRCGAFQHVPL--HEYKHNLHSIVSFLKNRWPN-----TLVLLI-TPPPIDEEARLKHPYVENPT 145 (244)
Q Consensus 74 d~vii~~G~ND~~~~~~~~~~~~~~~--~~~~~~l~~~v~~~~~~~p~-----~~vil~-~~~~~~~~~~~~~~~~~~~~ 145 (244)
|+|+|++|+||++ +. ....+ +.+..+++++++.+++..+. +.++++ ..+|....
T Consensus 79 d~v~i~lG~ND~~-~~-----~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------------ 140 (216)
T COG2755 79 DLVIIMLGGNDIG-PL-----RGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIAT------------ 140 (216)
T ss_pred CEEEEEeeccccc-hh-----cccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCcccc------------
Confidence 9999999999996 11 23344 89999999999999999754 445333 33332200
Q ss_pred CCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhc-ccccccccccCChhHHHHHHHHHHHHHhhcC
Q 026021 146 GLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADW-KTAYLSDGLHLNETGNRVVFEEVVMKLKTEG 217 (244)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~-~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~~ 217 (244)
............+++.++++|.+..+++.|++..... ..+ ...+..||+|||.+||+.||+.+.+.|....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~la~~~~v~~~d~~~~~~~-~~~~~~~~~~Dg~H~n~~Gy~~~a~~l~~~l~~~~ 212 (216)
T COG2755 141 DFPTYGADWFHAANEILAQLANELFVPLADLFDAGVD-GGRLPELLTEDGLHPNAKGYQALAEALAEVLAKLL 212 (216)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhcCccchHHHhcccc-cccCcccccCCCCCcCHhhHHHHHHHHHHHHHHHh
Confidence 1122455678899999999999888999999887664 222 2344589999999999999999999998764
No 30
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.85 E-value=6.7e-21 Score=151.38 Aligned_cols=195 Identities=24% Similarity=0.377 Sum_probs=126.8
Q ss_pred EEEEcccccccc--cCCCChHHHHHHhh---------ccccceEeeccCCcchH-----------HHHHHHHhhccccCC
Q 026021 5 IYLFGDSITESS--FTYGGWGASLAHHF---------SRTVDVVLRGYSGYNTR-----------WAVKVMERVLPAANG 62 (244)
Q Consensus 5 il~iGDSit~~g--~~~~~~~~~l~~~~---------~~~~~v~n~g~~G~~~~-----------~~~~~l~~~~~~~~~ 62 (244)
|+++|||+|..+ ....+|...+...+ ...+.+.|.|++|.++. .............
T Consensus 1 i~~fGDS~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~a~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (234)
T PF00657_consen 1 IVVFGDSLTDGGGDSNGGGWPEGLANNLSSCLGANQRNSGVDVSNYAISGATSDGDLYNLWAQVQNISQQISRLLDSK-- 78 (234)
T ss_dssp EEEEESHHHHTTTSSTTCTHHHHHHHHCHHCCHHHHHCTTEEEEEEE-TT--CC-HGGCCCCTCHHHHHHHHHHHHHH--
T ss_pred CEEEeehhcccCCCCCCcchhhhHHHHHhhccccccCCCCCCeeccccCCCccccccchhhHHHHHHHHHhhcccccc--
Confidence 789999999441 22468999998877 34588999999998853 1111111111100
Q ss_pred CcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCc----eEEEEcCCCCChhhhhcC
Q 026021 63 ESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNT----LVLLITPPPIDEEARLKH 138 (244)
Q Consensus 63 ~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~----~vil~~~~~~~~~~~~~~ 138 (244)
...++|+|+|++|+||++. ...........+.+.++++++++.+++..+.. .++++..+|.........
T Consensus 79 ------~~~~~~lv~i~~G~ND~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T PF00657_consen 79 ------SFYDPDLVVIWIGTNDYFN-NRDSSDNNTSVEEFVENLRNAIKRLRSNGARLIIVANIVVINLPPIGCLPAWSS 151 (234)
T ss_dssp ------HHHTTSEEEEE-SHHHHSS-CCSCSTTHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEHHC-GGGSTTHHH
T ss_pred ------ccCCcceEEEecccCcchh-hcccchhhhhHhhHhhhhhhhhhHHhccCCcccccccccccccccccccccccc
Confidence 0478999999999999863 11112345678999999999999999655431 344444443321100000
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHH--------HhcCCCeeechhHhhhhhhc-----ccccccccccCChhHHHHH
Q 026021 139 PYVENPTGLPERTNEAAGAYAKACIEVA--------GECGLPVVDLWTKMQQLADW-----KTAYLSDGLHLNETGNRVV 205 (244)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a--------~~~~v~~iD~~~~~~~~~~~-----~~~~~~DgiHpn~~G~~~~ 205 (244)
............++....||+.+++++ ...++.++|++..+...... ..++..||+|||++||+++
T Consensus 152 -~~~~~~~~~~~~~~~~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~D~~Hpt~~g~~~i 230 (234)
T PF00657_consen 152 -NNKDSASCIERLNAIVAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPENDKYMFWDGVHPTEKGHKII 230 (234)
T ss_dssp -THTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGGHHHCBBSSSSSB-HHHHHHH
T ss_pred -ccccccccchhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCcccceeccCCCcCCCHHHHHHH
Confidence 001122345567888999999999999 57889999999998775321 2458999999999999999
Q ss_pred HHHH
Q 026021 206 FEEV 209 (244)
Q Consensus 206 a~~l 209 (244)
|+.|
T Consensus 231 A~~i 234 (234)
T PF00657_consen 231 AEYI 234 (234)
T ss_dssp HHHH
T ss_pred HcCC
Confidence 9976
No 31
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=99.84 E-value=1.2e-19 Score=148.15 Aligned_cols=179 Identities=12% Similarity=0.112 Sum_probs=118.6
Q ss_pred cceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHH
Q 026021 34 VDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFL 113 (244)
Q Consensus 34 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 113 (244)
..+.|.|++|.++..+....+........ ........++++|+|++|+||+|..+.. ....+.++|+++++++++.+
T Consensus 82 ~~~~N~av~Ga~s~dL~~qa~~lv~r~~~-~~~i~~~~dwklVtI~IG~ND~c~~~~~--~~~~~~~~~~~nL~~~L~~L 158 (288)
T cd01824 82 DSGFNVAEPGAKSEDLPQQARLLVRRMKK-DPRVDFKNDWKLITIFIGGNDLCSLCED--ANPGSPQTFVKNLRKALDIL 158 (288)
T ss_pred ccceeecccCcchhhHHHHHHHHHHHHhh-ccccccccCCcEEEEEecchhHhhhccc--ccCcCHHHHHHHHHHHHHHH
Confidence 46889999999999877544432221100 0001113578999999999999863321 12367999999999999999
Q ss_pred HhhCCCceEEEEcCCCCChhhhh---c----------CCCCC-CCCCCCccchHHHHHHHHHHHHHHHhcCC-------C
Q 026021 114 KNRWPNTLVLLITPPPIDEEARL---K----------HPYVE-NPTGLPERTNEAAGAYAKACIEVAGECGL-------P 172 (244)
Q Consensus 114 ~~~~p~~~vil~~~~~~~~~~~~---~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~v-------~ 172 (244)
++..|.+.|+++++|........ + +++.. .......++.+.+.+|++.++++|.+..+ .
T Consensus 159 r~~~P~~~V~lv~~~~~~~l~~~~~~p~~c~~~~~~~C~c~~~~~~~~~~~~~~~~~~y~~~~~eia~~~~~~~~~f~vv 238 (288)
T cd01824 159 RDEVPRAFVNLVGLLNVASLRSLTKKPLQCETLLAPECPCLLGPTENSYQDLKKFYKEYQNEVEEIVESGEFDREDFAVV 238 (288)
T ss_pred HHhCCCcEEEEEcCCCcHHHHHhccCCccccccCCCcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccccCccEE
Confidence 99999999999999876432211 0 11110 11111136667889999999999998443 2
Q ss_pred eeechhHhhh---h-hhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 173 VVDLWTKMQQ---L-ADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 173 ~iD~~~~~~~---~-~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
+..++..... . +.....+..||+|||.+||..+|+.+++.|.+
T Consensus 239 ~qPf~~~~~~~~~~~g~d~~~~~~D~~Hps~~G~~~ia~~lwn~m~~ 285 (288)
T cd01824 239 VQPFFEDTSLPPLPDGPDLSFFSPDCFHFSQRGHAIAANALWNNLLE 285 (288)
T ss_pred eeCchhccccccccCCCcchhcCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3222222110 0 01124688999999999999999999999876
No 32
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=99.82 E-value=6.1e-19 Score=141.41 Aligned_cols=166 Identities=17% Similarity=0.217 Sum_probs=123.0
Q ss_pred eEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHh
Q 026021 36 VVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKN 115 (244)
Q Consensus 36 v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~ 115 (244)
..|.|++|++++++..++++++.+.. ...|.+|+|++|+||.|...+.. .+.+++++|++++.++++.+++
T Consensus 94 ~qN~G~sGatSrdl~~~l~~Ll~n~~--------~~~P~lVtI~lGgND~C~g~~d~-~~~tp~eefr~NL~~~L~~Lr~ 164 (305)
T cd01826 94 YQNLGVNGASSRNLLSIIKSIARNRT--------TDKPALVIYSMIGNDVCNGPNDT-INHTTPEEFYENVMEALKYLDT 164 (305)
T ss_pred HHHhccchhhhHHHHHHHHHhccccc--------cCCCeEEEEEeccchhhcCCCcc-ccCcCHHHHHHHHHHHHHHHHh
Confidence 77889999999999999988775432 36789999999999999864332 3479999999999999999999
Q ss_pred hCCC-ceEEEEcCCCCChhhhhc-----C------------------------CC-CCC--CCCCCccchHHHHHHHHHH
Q 026021 116 RWPN-TLVLLITPPPIDEEARLK-----H------------------------PY-VEN--PTGLPERTNEAAGAYAKAC 162 (244)
Q Consensus 116 ~~p~-~~vil~~~~~~~~~~~~~-----~------------------------~~-~~~--~~~~~~~~~~~~~~~~~~~ 162 (244)
+.|. +.|+|++.|....- +.. . ++ ++. .........++.++++..+
T Consensus 165 ~lP~~s~ViLvgmpd~~~L-~~~~~~r~hplg~~~~~vty~~~y~~lncl~~spC~gw~~~n~t~rn~t~~~a~~l~~~~ 243 (305)
T cd01826 165 KLPNGSHVILVGLVDGRIL-YDTLHNRLHPIGQLNKDVTYPNLYDYLNCLQVSPCWGWLNSNETLRNLTSERAAQLSNVL 243 (305)
T ss_pred cCCCCCEEEEEeccchhhh-hhhhccccccchhcccccchhhhhhhhcccccCCccccccccccchhHHHHHHHHHHHHH
Confidence 9877 79999999873111 111 0 01 110 1123345667889999999
Q ss_pred HHHHHhc-----CCCeeec-hhHhhhh----h--hcccccccccccCChhHHHHHHHHHHH
Q 026021 163 IEVAGEC-----GLPVVDL-WTKMQQL----A--DWKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 163 ~~~a~~~-----~v~~iD~-~~~~~~~----~--~~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
++++++. .+.++|. .+.+... + .|......||+|||..|+.++|+.+++
T Consensus 244 ~~ia~~~~f~nF~v~~~~f~l~~v~~~~~~~g~~~~~~i~~~DgfHpsq~g~~l~a~~lW~ 304 (305)
T cd01826 244 KRIAANETFNNFDVHYIDFPIQQIVDMWIAFGGQTWQLIEPVDGFHPSQIANALLAEVFWK 304 (305)
T ss_pred HHHHhhccccceeEEEecchHHHHhhHHHhcCCCchhhcccccCCCccHHHHHHHHHHhhc
Confidence 9999997 6777777 4444332 1 133233379999999999999999875
No 33
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.76 E-value=4.2e-17 Score=132.90 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=137.8
Q ss_pred eEEEEcccccccccCC----------------------CChHHHHHHhhcc--ccceEeeccCCcchHH-----------
Q 026021 4 KIYLFGDSITESSFTY----------------------GGWGASLAHHFSR--TVDVVLRGYSGYNTRW----------- 48 (244)
Q Consensus 4 ~il~iGDSit~~g~~~----------------------~~~~~~l~~~~~~--~~~v~n~g~~G~~~~~----------- 48 (244)
+++++|||++..|... ..|++.|++.++. ...+.|.|.+|+++..
T Consensus 1 ~l~vFGDS~sD~Gn~~~~~~~~~~~~~~~~~~grfsnG~~w~d~la~~lg~~~~~~~~N~A~~Ga~~~~~~~~~~~~~~~ 80 (270)
T cd01846 1 RLVVFGDSLSDTGNIFKLTGGSNPPPSPPYFGGRFSNGPVWVEYLAATLGLSGLKQGYNYAVGGATAGAYNVPPYPPTLP 80 (270)
T ss_pred CeEEeeCccccCCcchhhcCCCCCCCCCCCCCCccCCchhHHHHHHHHhCCCccCCcceeEecccccCCcccCCCCCCCC
Confidence 5899999999766310 1399999999874 3589999999987653
Q ss_pred -HHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 49 -AVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 49 -~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
+...++++...... .....++++|++|+||................++.+++.++++++...+ ..+|+++++
T Consensus 81 ~l~~Qv~~f~~~~~~------~~~~~~l~~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g-~~~i~v~~~ 153 (270)
T cd01846 81 GLSDQVAAFLAAHKL------RLPPDTLVAIWIGANDLLNALDLPQNPDTLVTRAVDNLFQALQRLYAAG-ARNFLVLNL 153 (270)
T ss_pred CHHHHHHHHHHhccC------CCCCCcEEEEEeccchhhhhccccccccccHHHHHHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 23334443332100 0246689999999999975321111123457888999999999999764 346899999
Q ss_pred CCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHh-------cCCCeeechhHhhhhh----------------
Q 026021 128 PPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGE-------CGLPVVDLWTKMQQLA---------------- 184 (244)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-------~~v~~iD~~~~~~~~~---------------- 184 (244)
|+++..+........ .....+..+..+|+.+++.+++ ..+.++|++..+.+.-
T Consensus 154 p~~~~~P~~~~~~~~----~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~yGf~~~~~~C~ 229 (270)
T cd01846 154 PDLGLTPAFQAQGDA----VAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDTNALFNDILDNPAAYGFTNVTDPCL 229 (270)
T ss_pred CCCCCCcccccCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhcCCCcCcchhc
Confidence 999877654422110 1136777888999999988775 2467999998876521
Q ss_pred -------------hcccccccccccCChhHHHHHHHHHHH
Q 026021 185 -------------DWKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 185 -------------~~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
....++..|++|||+++|+++|+.+++
T Consensus 230 ~~~~~~~~~~~c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 230 DYVYSYSPREACANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred CCCccccccCCCCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 123468899999999999999998875
No 34
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=5.6e-17 Score=128.97 Aligned_cols=179 Identities=21% Similarity=0.335 Sum_probs=130.9
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhcc--ccceEee--ccCCcchHHHH---HHHHhhccccCCCcccccccCCccEE
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSR--TVDVVLR--GYSGYNTRWAV---KVMERVLPAANGESESERERVSTIAV 76 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~--~~~v~n~--g~~G~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~pd~v 76 (244)
+|+|+|||++ . |....|.+.|.. .+++.++ |-+|.+..... ..+...+.+ ..+|..|
T Consensus 118 kvLvvGDslm-~-----gla~gl~~al~t~~~i~i~~~sn~SSGlvr~dYfdWpk~i~~~l~~----------~~~~a~v 181 (354)
T COG2845 118 KVLVVGDSLM-Q-----GLAEGLDKALATSPGITIVTRSNGSSGLVRDDYFDWPKAIPELLDK----------HPKPAAV 181 (354)
T ss_pred EEEEechHHh-h-----hhHHHHHHHhccCCCcEEEEeecCCCCcccccccccHHHHHHHHHh----------cCCccEE
Confidence 8999999999 4 345555555533 2555555 45554433322 334444443 3599999
Q ss_pred EEEeccCCCCCCCCCCCCcccC----hhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccch
Q 026021 77 AVFFGANDACLPDRCGAFQHVP----LHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTN 152 (244)
Q Consensus 77 ii~~G~ND~~~~~~~~~~~~~~----~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (244)
|+++|.||.......+...... .++|.+.++.+++.++.. +++|+|++.|++... .++
T Consensus 182 VV~lGaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~--~~~V~WvGmP~~r~~----------------~l~ 243 (354)
T COG2845 182 VVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTH--KVPVLWVGMPPFRKK----------------KLN 243 (354)
T ss_pred EEEecCCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhccc--CCcEEEeeCCCcccc----------------ccc
Confidence 9999999985533222111111 356777888888887776 677999999999755 666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhc-------------ccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 153 EAAGAYAKACIEVAGECGLPVVDLWTKMQQLADW-------------KTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~-------------~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
..+..+|..+++.+++++-.+||+|..+....+. -.....||||+|.+|.+++|..+.+.|+..
T Consensus 244 ~dm~~ln~iy~~~vE~~~gk~i~i~d~~v~e~G~~f~~~~~D~NGq~vrlR~~DGIh~T~~Gkrkla~~~~k~I~~~ 320 (354)
T COG2845 244 ADMVYLNKIYSKAVEKLGGKFIDIWDGFVDEGGKDFVTTGVDINGQPVRLRAKDGIHFTKEGKRKLAFYLEKPIRAE 320 (354)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEecccccccCCceeEEeccccCCceEEEeccCCceechhhHHHHHHHHHHHHHhh
Confidence 7888999999999999999999999998776542 236779999999999999999999999875
No 35
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.70 E-value=5.9e-16 Score=114.18 Aligned_cols=134 Identities=17% Similarity=0.136 Sum_probs=106.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhC-CCceEEEEcCCCCChhhhhcCCCCCCCCCCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRW-PNTLVLLITPPPIDEEARLKHPYVENPTGLP 148 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~-p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~ 148 (244)
..+.|+|++..|..|++... ..+.++|++|+++++..+++-. +.+.+||.+..|+.+.....+. ..+....+
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~------~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl-~~~~~~~~ 120 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQ------RNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFL-LPELHDLS 120 (183)
T ss_pred CCceeEEEEecceecccccC------CCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCcee-cccccccc
Confidence 47789999999999998754 2479999999999999999854 6899999999998655443321 11111233
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 149 ERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 149 ~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
......+.++|..-+++++++++.+.|++..+.... .....||||+|+.||+.+++.++..|
T Consensus 121 ~~lr~dv~eaN~~A~~va~~~~~dVlDLh~~fr~~~---~~~~~DgVHwn~~a~r~ls~lll~hI 182 (183)
T cd01842 121 KSLRYDVLEGNFYSATLAKCYGFDVLDLHYHFRHAM---QHRVRDGVHWNYVAHRRLSNLLLAHV 182 (183)
T ss_pred ccchhHHHHHHHHHHHHHHHcCceeeehHHHHHhHH---hhcCCCCcCcCHHHHHHHHHHHHHhh
Confidence 344566789999999999999999999999994333 35679999999999999999999876
No 36
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.48 E-value=6e-13 Score=110.83 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=127.9
Q ss_pred CeEEEEcccccccccC---------------------C-------CChHHHHHHhhcccc---------------ceEee
Q 026021 3 PKIYLFGDSITESSFT---------------------Y-------GGWGASLAHHFSRTV---------------DVVLR 39 (244)
Q Consensus 3 ~~il~iGDSit~~g~~---------------------~-------~~~~~~l~~~~~~~~---------------~v~n~ 39 (244)
|.|+++|||++..|.. + ..|.+.|++.++-.. .-.|.
T Consensus 1 ~al~vFGDS~sD~Gn~~~~~~~~~~~~~PyG~~~~~~p~GRfSnG~~~~d~la~~lgl~~~~p~~~~~~~~~~~~~G~Nf 80 (315)
T cd01837 1 PALFVFGDSLVDTGNNNYLPTLAKANFPPYGIDFPGRPTGRFSNGRLIIDFIAEALGLPLLPPPYLSPNGSSDFLTGVNF 80 (315)
T ss_pred CcEEEecCccccCCCccccccccccCCCCCcCcCCCCCCccccCCchhhhhhhhhccCCCCCCCccCccccchhhcccee
Confidence 4689999999976631 0 128888888875321 35788
Q ss_pred ccCCcchHH----------HHHHHHhhcccc---CC--CcccccccCCccEEEEEeccCCCCCCCCCCCCcccCh----h
Q 026021 40 GYSGYNTRW----------AVKVMERVLPAA---NG--ESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPL----H 100 (244)
Q Consensus 40 g~~G~~~~~----------~~~~l~~~~~~~---~~--~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~----~ 100 (244)
+++|.++.. +...++.+.... .. +..+......-++++|++|.||.............+. +
T Consensus 81 A~gGA~~~~~~~~~~~~~~l~~Qv~~F~~~~~~~~~~~g~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~ 160 (315)
T cd01837 81 ASGGAGILDSTGFLGSVISLSVQLEYFKEYKERLRALVGEEAAADILSKSLFLISIGSNDYLNNYFANPTRQYEVEAYVP 160 (315)
T ss_pred cccCCccccCCcceeeeecHHHHHHHHHHHHHHHHHhhCHHHHHHHHhCCEEEEEecccccHHHHhcCccccCCHHHHHH
Confidence 888876431 112222221100 00 0000000245579999999999864211110001122 3
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhc-------CCCe
Q 026021 101 EYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGEC-------GLPV 173 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~v~~ 173 (244)
.....+.+.|+++.+.+. -+|+|.+.||++..+............+....+.....+|+.+++..++. .+.+
T Consensus 161 ~~v~~i~~~v~~L~~~GA-r~~~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~ 239 (315)
T cd01837 161 FLVSNISSAIKRLYDLGA-RKFVVPGLGPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVY 239 (315)
T ss_pred HHHHHHHHHHHHHHhCCC-cEEEecCCCCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 345566677777777653 36899999999887765432211223456678888999999999877652 3678
Q ss_pred eechhHhhhhhh------------------------------------cccccccccccCChhHHHHHHHHHHH
Q 026021 174 VDLWTKMQQLAD------------------------------------WKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 174 iD~~~~~~~~~~------------------------------------~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
+|++..+.+.-. ..+++..|++|||+++|+++|+.++.
T Consensus 240 ~D~y~~~~~i~~np~~yGf~~~~~aCc~~g~~~~~~~c~~~~~~~C~~p~~y~fwD~~HpT~~~~~~ia~~~~~ 313 (315)
T cd01837 240 ADIYNALLDLIQNPAKYGFENTLKACCGTGGPEGGLLCNPCGSTVCPDPSKYVFWDGVHPTEAANRIIADALLS 313 (315)
T ss_pred EehhHHHHHHHhChhhcCCcCCCcCccCCCCCCcccccCCCCCCcCCCccceEEeCCCChHHHHHHHHHHHHhc
Confidence 999987643210 11346799999999999999998864
No 37
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=99.46 E-value=9.2e-13 Score=107.97 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=124.3
Q ss_pred CeEEEEcccccccccCC-------------C----ChHHHHHHhhc--------cccceEeeccCCcchHH---------
Q 026021 3 PKIYLFGDSITESSFTY-------------G----GWGASLAHHFS--------RTVDVVLRGYSGYNTRW--------- 48 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~-------------~----~~~~~l~~~~~--------~~~~v~n~g~~G~~~~~--------- 48 (244)
++|+++|||++..|-.. . .|...+...++ ......|.+.+|.++..
T Consensus 2 ~~i~vFGDSl~D~Gn~~~~~~~~~~~gRFsnG~~~~d~~~~~~~~~~~~~~~~~~~~~G~NfA~gGa~~~~~~~~~~~~~ 81 (281)
T cd01847 2 SRVVVFGDSLSDVGTYNRAGVGAAGGGRFTVNDGSIWSLGVAEGYGLTTGTATPTTPGGTNYAQGGARVGDTNNGNGAGA 81 (281)
T ss_pred CceEEecCcccccCCCCccccCCCCCcceecCCcchHHHHHHHHcCCCcCcCcccCCCCceeeccCccccCCCCcccccc
Confidence 47999999999776421 1 23333332221 12457888888876442
Q ss_pred ----HHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCC---cccC----hhHHHHHHHHHHHHHHhhC
Q 026021 49 ----AVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAF---QHVP----LHEYKHNLHSIVSFLKNRW 117 (244)
Q Consensus 49 ----~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~---~~~~----~~~~~~~l~~~v~~~~~~~ 117 (244)
+...++.+..... ....-++++|++|.||.......... .... .......+...++++.+.+
T Consensus 82 ~~~~l~~Qv~~f~~~~~-------~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~G 154 (281)
T cd01847 82 VLPSVTTQIANYLAAGG-------GFDPNALYTVWIGGNDLIAALAALTTATTTQAAAVAAAATAAADLASQVKNLLDAG 154 (281)
T ss_pred CCCCHHHHHHHHHHhcC-------CCCCCeEEEEecChhHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2233333332210 01356899999999998532100000 0011 2344567778888888876
Q ss_pred CCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcC---CCeeechhHhhhhhh---------
Q 026021 118 PNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECG---LPVVDLWTKMQQLAD--------- 185 (244)
Q Consensus 118 p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---v~~iD~~~~~~~~~~--------- 185 (244)
. -+|++++.||++..+...... .......+.....+|+.+++..++.+ +.++|++..+.+.-.
T Consensus 155 A-r~ilv~~lpplgc~P~~~~~~----~~~~~~~n~~~~~~N~~L~~~l~~l~~~~i~~~D~~~~~~~i~~nP~~yGf~~ 229 (281)
T cd01847 155 A-RYILVPNLPDVSYTPEAAGTP----AAAAALASALSQTYNQTLQSGLNQLGANNIIYVDTATLLKEVVANPAAYGFTN 229 (281)
T ss_pred C-CEEEEeCCCCcccCcchhhcc----chhHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEHHHHHHHHHhChHhcCccC
Confidence 4 468999999998776543210 11234677788899999988777633 679999988755210
Q ss_pred ------------------------cccccccccccCChhHHHHHHHHHHHHH
Q 026021 186 ------------------------WKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 186 ------------------------~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
...+++.|++|||+++|+++|+.++..|
T Consensus 230 ~~~~CC~~~~~~~~~~~~~~~c~~~~~y~fwD~~HpTe~~~~~ia~~~~~~l 281 (281)
T cd01847 230 TTTPACTSTSAAGSGAATLVTAAAQSTYLFADDVHPTPAGHKLIAQYALSRL 281 (281)
T ss_pred CCccccCCCCccccccccccCCCCccceeeccCCCCCHHHHHHHHHHHHHhC
Confidence 1124778999999999999999988753
No 38
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=99.41 E-value=6.6e-12 Score=103.38 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=112.3
Q ss_pred eEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHh
Q 026021 36 VVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKN 115 (244)
Q Consensus 36 v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~ 115 (244)
-.|.+++|+.+..+......+....... .......++.+|+|++|+||.|..++.......+.+.|++++++.++.+++
T Consensus 149 ~lNvA~~Ga~s~Dlp~QAr~Lv~rik~~-~~i~~~~dWKLi~IfIG~ND~c~~c~~~~~~~~~~~~~~~~i~~Al~~L~~ 227 (397)
T KOG3670|consen 149 QLNVAEPGAESEDLPDQARDLVSRIKKD-KEINMKNDWKLITIFIGTNDLCAYCEGPETPPSPVDQHKRNIRKALEILRD 227 (397)
T ss_pred ccccccccccchhhHHHHHHHHHHHHhc-cCcccccceEEEEEEeccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567788888776554433333211100 001124789999999999999987755444556789999999999999999
Q ss_pred hCCCceEEEEcCCCCChhhhhcC----CCCC----CCCC------CCccchHHHHHHHHHHHHHHHhcCCC---e-eech
Q 026021 116 RWPNTLVLLITPPPIDEEARLKH----PYVE----NPTG------LPERTNEAAGAYAKACIEVAGECGLP---V-VDLW 177 (244)
Q Consensus 116 ~~p~~~vil~~~~~~~~~~~~~~----~~~~----~~~~------~~~~~~~~~~~~~~~~~~~a~~~~v~---~-iD~~ 177 (244)
.-|.+-|.+++++++. ...... .+.. +... ........+..|++...++....... | |...
T Consensus 228 nvPR~iV~lvg~~~~~-~l~q~~~~~~~c~~~~~~ec~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f~~~dFtvvvq 306 (397)
T KOG3670|consen 228 NVPRTIVSLVGMFNVS-LLRQASKLLKFCKRLHRFECPCLLNKNFELADIEGFCYDYQNKEFEIQNNGRFDREDFTVVVQ 306 (397)
T ss_pred cCCceEEEEecCCCHH-HHHHhhcccccccccccccCccccccccchhHHHHHHHHHHHHHHHHHhcccccccceeEEee
Confidence 9999989999888772 211110 0100 0001 11122355667777777776654333 1 1111
Q ss_pred hHhhh-------hhh-cccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 178 TKMQQ-------LAD-WKTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 178 ~~~~~-------~~~-~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
..+.. .+. ....+..|++|+|..||..+|+.+|..|-+.
T Consensus 307 Pf~~~~t~P~l~~g~~d~~ffa~DcfHlS~~GHa~~ak~lWNnl~ep 353 (397)
T KOG3670|consen 307 PFFTDITIPPLPHGRYDLTFFAPDCFHLSQRGHAIAAKHLWNNLFEP 353 (397)
T ss_pred ccccccCCCcCCCCCCCchhcccCccccchHHHHHHHHHHHHHhhcC
Confidence 11111 011 2347889999999999999999999998776
No 39
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.40 E-value=7.4e-12 Score=106.17 Aligned_cols=189 Identities=11% Similarity=0.039 Sum_probs=123.3
Q ss_pred CeEEEEcccccccccC----------C------------CChHHHHHHhhccccceEeeccCCcchHH------------
Q 026021 3 PKIYLFGDSITESSFT----------Y------------GGWGASLAHHFSRTVDVVLRGYSGYNTRW------------ 48 (244)
Q Consensus 3 ~~il~iGDSit~~g~~----------~------------~~~~~~l~~~~~~~~~v~n~g~~G~~~~~------------ 48 (244)
++|+++|||++..|.. + ..|.+.|+....-.....|.|.+|.++..
T Consensus 143 ~ai~vFGDSlsDtGnn~y~~t~~~~PPyG~~ftGRFSNG~v~~DfLA~~pyl~~~G~NFA~GGA~~~t~~~~~~~~~~~~ 222 (408)
T PRK15381 143 TRLVFFGDSLSDSLGRMFEKTHHILPSYGQYFGGRFTNGFTWTEFLSSPHFLGKEMLNFAEGGSTSASYSCFNCIGDFVS 222 (408)
T ss_pred CeEEEeCCccccCCCccccccccCCCCCCCCCCcccCCCchhhheeccccccCCCCceEeecccccccccccccccCccC
Confidence 4799999999977421 1 12666666321101256789999877641
Q ss_pred -HHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 49 -AVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 49 -~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
+...++... ...-++++|++|.||.... ...........+...|+++.+.+ .-+|+|.+.
T Consensus 223 ~L~~Qv~~~~------------~~~~aL~lV~iG~NDy~~~------~~~~v~~vV~~~~~~l~~Ly~lG-ARk~vV~nl 283 (408)
T PRK15381 223 NTDRQVASYT------------PSHQDLAIFLLGANDYMTL------HKDNVIMVVEQQIDDIEKIISGG-VNNVLVMGI 283 (408)
T ss_pred CHHHHHHHHH------------hcCCcEEEEEeccchHHHh------HHHHHHHHHHHHHHHHHHHHHcC-CcEEEEeCC
Confidence 112222211 1345899999999998621 11124455566666777777765 347899999
Q ss_pred CCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhc-------CCCeeechhHhhhhh------hc--------
Q 026021 128 PPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGEC-------GLPVVDLWTKMQQLA------DW-------- 186 (244)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~v~~iD~~~~~~~~~------~~-------- 186 (244)
||++..+..... ......+.....+|+.+++..++. .+.++|++..+.+.- +.
T Consensus 284 pPlGC~P~~~~~------~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF~~~~~cCg 357 (408)
T PRK15381 284 PDLSLTPYGKHS------DEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENPYTH 357 (408)
T ss_pred CCCCCcchhhcc------CchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCCCccccccC
Confidence 999887654311 112456677778888888876642 366899998865421 00
Q ss_pred -----------------ccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 187 -----------------KTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 187 -----------------~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
.++++.|.+|||++.|+++|..+.+.|.+.
T Consensus 358 ~G~~~~~~~C~p~~~~C~~YvFWD~vHPTe~ah~iiA~~~~~~i~~~ 404 (408)
T PRK15381 358 HGYVHVPGAKDPQLDICPQYVFNDLVHPTQEVHHCFAIMLESFIAHH 404 (408)
T ss_pred CCccCCccccCcccCCCCceEecCCCCChHHHHHHHHHHHHHHHHHh
Confidence 234779999999999999999999999764
No 40
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=99.00 E-value=1.7e-09 Score=88.74 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=114.0
Q ss_pred eEEE--EcccccccccCCCChHHH--HHHhhccc--cceEeeccCCcchHHHH---HHHH-hhccccCCCcccccccCCc
Q 026021 4 KIYL--FGDSITESSFTYGGWGAS--LAHHFSRT--VDVVLRGYSGYNTRWAV---KVME-RVLPAANGESESERERVST 73 (244)
Q Consensus 4 ~il~--iGDSit~~g~~~~~~~~~--l~~~~~~~--~~v~n~g~~G~~~~~~~---~~l~-~~~~~~~~~~~~~~~~~~p 73 (244)
+|++ +||++. .+|.+. |...+... +.+..++.++....... ..+. .... ..++
T Consensus 39 ~~lV~vvGD~~a------~~la~g~~l~~~~a~~p~v~v~~~~~~~lvr~d~~dw~~~i~~~~~~-----------~~~~ 101 (327)
T PF04311_consen 39 RILVRVVGDFLA------SGLADGFYLQEAFADNPDVAVADRVNGSLVRDDYYDWPEAIAASLIE-----------AEKP 101 (327)
T ss_pred eEEEeeccchhh------hhhhhhhHHHHHhccCCCeEEEeecCCCcccccccccHHHhhhhhhh-----------ccCC
Confidence 6777 899999 567777 77766433 56666655552111111 1122 2222 3666
Q ss_pred cEEEE-EeccCCCCCCCCCCCCcccChhHHHHHHH-HHHHHHHhhCCCceEEEEcCC-CCChhhhhcCCCCCCCCCCCcc
Q 026021 74 IAVAV-FFGANDACLPDRCGAFQHVPLHEYKHNLH-SIVSFLKNRWPNTLVLLITPP-PIDEEARLKHPYVENPTGLPER 150 (244)
Q Consensus 74 d~vii-~~G~ND~~~~~~~~~~~~~~~~~~~~~l~-~~v~~~~~~~p~~~vil~~~~-~~~~~~~~~~~~~~~~~~~~~~ 150 (244)
+.+++ ++|.||.......+.....-.+.+.+.|. ++...+++. +..+++++.| ++... +
T Consensus 102 ~~vvv~miG~nDrq~l~~gds~~~~~s~~W~~~Y~~r~~~~i~~~--~vp~~wvglPd~~~~~----------------~ 163 (327)
T PF04311_consen 102 AAVVVVMIGSNDRQQLRIGDSQMQFRSPEWLEEYGKRIAKVIREL--KVPSIWVGLPDYFRWP----------------K 163 (327)
T ss_pred ceEEEEEeccCCCcccccCCcccccCCHHHHHHHHHHHHHHHHhc--CCCeEEEeCCcccCCh----------------h
Confidence 66666 99999986544333322222333333333 344455554 5679999998 66554 4
Q ss_pred chHHHHHHHHH-HHHHHHhcCCCeeechhHhhhhhh---------c---ccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 151 TNEAAGAYAKA-CIEVAGECGLPVVDLWTKMQQLAD---------W---KTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 151 ~~~~~~~~~~~-~~~~a~~~~v~~iD~~~~~~~~~~---------~---~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
....+..+|+. +++.+...+..|+|.|+ |.+..+ | ......||+|+|.+ ++++|-.+..-|++.
T Consensus 164 ~~~d~l~~n~~~yr~~a~~~g~~fvDiwd-F~De~G~~~~~Gpd~~gq~~rlR~~dgl~ft~A-~rkla~~ve~pi~r~ 240 (327)
T PF04311_consen 164 MSADMLALNDILYRDAAEKAGGGFVDIWD-FVDENGRYLAFGPDEWGQIYRLRSNDGLNFTKA-KRKLAFYVEKPIMRL 240 (327)
T ss_pred hhHHHHHhcchhHHHHHHHhcCccccccc-cccCCCCcccCCCCccchHhhhhhhcceeeeec-ccceEEEechHhhhh
Confidence 45677789999 89999999999999999 877543 1 13566999999999 999988887666555
No 41
>PLN03156 GDSL esterase/lipase; Provisional
Probab=98.97 E-value=9.6e-09 Score=86.55 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=95.6
Q ss_pred ccEEEEEeccCCCCCC--CCCCCCcccChhHHHH----HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCC
Q 026021 73 TIAVAVFFGANDACLP--DRCGAFQHVPLHEYKH----NLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTG 146 (244)
Q Consensus 73 pd~vii~~G~ND~~~~--~~~~~~~~~~~~~~~~----~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
-.+.+|++|.||.... .........+.++|.. .+.+.|+++.+.+ .-+++|++.||++..+...........+
T Consensus 158 ~sL~~i~iG~NDy~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~i~~Ly~~G-AR~~~V~~lpplGc~P~~~~~~~~~~~~ 236 (351)
T PLN03156 158 EALYLISIGTNDFLENYYTFPGRRSQYTVSQYQDFLIGIAENFVKKLYRLG-ARKISLGGLPPMGCLPLERTTNLMGGSE 236 (351)
T ss_pred cCeEEEEecchhHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEecCCCccccCHHHHhhcCCCCCC
Confidence 4699999999999521 1011112234555544 4445567777665 3468888999998877643221112234
Q ss_pred CCccchHHHHHHHHHHHHHHHh-------cCCCeeechhHhhhhh------h----------------------------
Q 026021 147 LPERTNEAAGAYAKACIEVAGE-------CGLPVVDLWTKMQQLA------D---------------------------- 185 (244)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~a~~-------~~v~~iD~~~~~~~~~------~---------------------------- 185 (244)
+.+..+.....+|+.+++..++ ..+.++|.+..+.+.- +
T Consensus 237 C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~~aCCg~g~~~~~~~C~~~~~~~C 316 (351)
T PLN03156 237 CVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGFEVTSVACCATGMFEMGYLCNRNNPFTC 316 (351)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCcccCCccccCCCCCCCccccCCCCCCcc
Confidence 5667788889999999887764 2366889998875421 0
Q ss_pred --cccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 186 --WKTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 186 --~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
..+++..|++|||+++|+++|+.++..|..+
T Consensus 317 ~~p~~yvfWD~~HPTe~a~~~iA~~~~~~l~~~ 349 (351)
T PLN03156 317 SDADKYVFWDSFHPTEKTNQIIANHVVKTLLSK 349 (351)
T ss_pred CCccceEEecCCCchHHHHHHHHHHHHHHHHHh
Confidence 0235779999999999999999999988653
No 42
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=98.93 E-value=3.1e-08 Score=80.22 Aligned_cols=141 Identities=19% Similarity=0.126 Sum_probs=93.9
Q ss_pred CccEEEEEeccCCCCCCCC---CCCCcccChhHHHHHHHHHHHHHHhhC----CCceEEEEcCCCCChhhhhcCCCCCC-
Q 026021 72 STIAVAVFFGANDACLPDR---CGAFQHVPLHEYKHNLHSIVSFLKNRW----PNTLVLLITPPPIDEEARLKHPYVEN- 143 (244)
Q Consensus 72 ~pd~vii~~G~ND~~~~~~---~~~~~~~~~~~~~~~l~~~v~~~~~~~----p~~~vil~~~~~~~~~~~~~~~~~~~- 143 (244)
.||+||+..|..+...... .........+.|..+++.+++.+++.. |.++|++.+..|.......- ..+..
T Consensus 100 ~pdvvV~nsG~W~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~-~~gg~c 178 (263)
T PF13839_consen 100 RPDVVVINSGLWYLRRSGFIEWGDNKEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDW-NSGGSC 178 (263)
T ss_pred CCCEEEEEcchhhhhcchhcccCCCcCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCcccccccc-ccCCCc
Confidence 8999999999999842100 000223467899999999999988654 56889998887665443311 11111
Q ss_pred -CCCCCccchHHHHHHHHHHHHHH-HhcCCCeeechhHh-hhhh-h-c-------cccccccccc-CChhHHHHHHHHHH
Q 026021 144 -PTGLPERTNEAAGAYAKACIEVA-GECGLPVVDLWTKM-QQLA-D-W-------KTAYLSDGLH-LNETGNRVVFEEVV 210 (244)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~a-~~~~v~~iD~~~~~-~~~~-~-~-------~~~~~~DgiH-pn~~G~~~~a~~l~ 210 (244)
........+..+..+++.+.++. ...++.++|.+..+ .... + . ...-..||+| ..+.-...+.+.|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~lL~ 258 (263)
T PF13839_consen 179 NPPRREEITNEQIDELNEALREALKKNSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNELLL 258 (263)
T ss_pred CcccccCCCHHHHHHHHHHHHHHhhcCCCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHHHHH
Confidence 11233456678889999999887 67889999994443 3222 1 0 0112489999 88888888888887
Q ss_pred HHH
Q 026021 211 MKL 213 (244)
Q Consensus 211 ~~l 213 (244)
..|
T Consensus 259 ~~l 261 (263)
T PF13839_consen 259 NLL 261 (263)
T ss_pred HHh
Confidence 765
No 43
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=98.61 E-value=2.8e-06 Score=70.48 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=122.4
Q ss_pred CeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 3 PKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
+.++++|||-+ ..+.. ..+.+. .+.+.+.|.+.+|.+.......++++... ..+||+|++....
T Consensus 64 k~~~~fG~SRs-~~F~~----~~i~~~-~~dw~~yNFS~P~~~P~y~~y~le~i~~~----------g~kPd~v~le~sp 127 (345)
T PF07611_consen 64 KLLVVFGSSRS-LPFSN----EYIEKK-YPDWEVYNFSVPGGTPAYYLYWLEKILED----------GIKPDFVILEVSP 127 (345)
T ss_pred eEEEEEecCcc-cccCh----HHHHhh-CCCCeEEEecCCCCchHHHHHHHHHHHhC----------CCCCCEEEEEcCH
Confidence 35899999999 54422 234444 35589999999999999999999999987 5899999999655
Q ss_pred ---CCCCC------------------------------------------------------------------------
Q 026021 83 ---NDACL------------------------------------------------------------------------ 87 (244)
Q Consensus 83 ---ND~~~------------------------------------------------------------------------ 87 (244)
|+...
T Consensus 128 ~~Fn~~s~~~~~~~L~y~~d~~Fil~~~d~~s~~d~~~y~~~rlF~~~~~~p~~~~i~~r~k~~~~~~~~~~~~~~~~~L 207 (345)
T PF07611_consen 128 EGFNKNSGFFKDYNLRYSFDPRFILRHADRFSKDDVDYYFAKRLFATSRYPPRLKNISARIKNKKLEAYEKLRELTIRNL 207 (345)
T ss_pred hHhcCCcchhhcchhhcCCCHHHHHHHHHhcCHHHHHHHHHHHhheeeccCCCHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 55400
Q ss_pred ----CCC-CC--CCcccCh---------------------hHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCC
Q 026021 88 ----PDR-CG--AFQHVPL---------------------HEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHP 139 (244)
Q Consensus 88 ----~~~-~~--~~~~~~~---------------------~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~ 139 (244)
... .+ .....+. +.-..-++++++.+++. +++++++.|.-.......
T Consensus 208 ~~~~~~~~~~~~~~~~~d~ekL~~~s~~~~~~~l~~f~~s~~q~~F~e~~L~~ake~--~I~~vl~~P~V~~~~~~~--- 282 (345)
T PF07611_consen 208 KKGEGNAFSPFSPYVENDPEKLEKSSERIFKWYLSSFTFSETQFFFLEKFLKLAKEN--GIPVVLWWPKVSPPYEKL--- 282 (345)
T ss_pred HhccccccCCCCCcCCCCHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHc--CCcEEEEEeccCHHHHHH---
Confidence 000 00 0001111 11235788999999997 566777777533221111
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 140 YVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
.+..+....+...+++++++.++.++|+.. .+...+....|+-|.+...|.-+++.|.+.+
T Consensus 283 ---------~~~~~~~~~w~~~i~~l~~~~~~~~~dmn~----d~~~~C~~F~D~~HlS~~Cy~e~~~~l~~~~ 343 (345)
T PF07611_consen 283 ---------YKELKVYESWWPIIKKLAKEYGIPFLDMNE----DPSYKCDDFSDASHLSPDCYPELMDILFKRY 343 (345)
T ss_pred ---------HHhhchhhHHHHHHHHHHhcCCceEecccC----CCCcchhhccCccccCcccchHHHHHHHHhc
Confidence 122344667888999999999999999964 2335556789999999999999999998764
No 44
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=98.17 E-value=2.3e-05 Score=56.07 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhh
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQL 183 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~ 183 (244)
..++-+++.+++. +++++++.+|-.+.-.... .-..+....+.+.+++.|+++|+.++|+..
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~PvNg~wydyt-----------G~~~~~r~~~y~kI~~~~~~~gf~v~D~s~----- 97 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPVNGKWYDYT-----------GLSKEMRQEYYKKIKYQLKSQGFNVADFSD----- 97 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE----HHHHHHT-----------T--HHHHHHHHHHHHHHHHTTT--EEE-TT-----
T ss_pred HHHHHHHHHHHHc--CCceEEEecCCcHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHCCCEEEeccc-----
Confidence 5679999999998 5778888776543221111 012357789999999999999999999853
Q ss_pred hhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 184 ADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 184 ~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
.+...+++.|-+||+.+|.-.+-+.|.+.+.+
T Consensus 98 ~~y~~yfm~D~iHlgw~GWv~vd~~i~~f~~~ 129 (130)
T PF04914_consen 98 DEYEPYFMQDTIHLGWKGWVYVDQAIYPFYKE 129 (130)
T ss_dssp GTTSTTSBSSSSSB-THHHHHHHHHHHHHHHS
T ss_pred CCCCCceeeecccCchhhHHHHHHHHHHHHhc
Confidence 34556899999999999999999999988764
No 45
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=98.02 E-value=4e-05 Score=63.52 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=86.0
Q ss_pred EEeccCCCCCCCCCCCCcccChhHH----HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchH
Q 026021 78 VFFGANDACLPDRCGAFQHVPLHEY----KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNE 153 (244)
Q Consensus 78 i~~G~ND~~~~~~~~~~~~~~~~~~----~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (244)
+.-|.||........ ......+ +.++...|+.+.+.+- ..+++++.|.....+... .......+...
T Consensus 167 ~~ggand~~~~~~~~---a~~~q~~~~~~~~~~~~~Vq~L~~AGA-~~i~v~~lpDl~l~P~~~-----~~~~~~~~a~~ 237 (370)
T COG3240 167 LWGGANDYLALPMLK---AAAYQQLEGSTKADQSSAVQRLIAAGA-RNILVMTLPDLSLTPAGK-----AYGTEAIQASQ 237 (370)
T ss_pred Hhhcchhhhcccccc---hhhhHHHhcchhhHHHHHHHHHHHhhc-cEEEEeeccccccccccc-----cccchHHHHHH
Confidence 456789986542111 1111112 3467778888888753 357777888776554432 11111225556
Q ss_pred HHHHHHHHHHHHHHhcC--CCeeechhHhhhhhh------c----------------------------ccccccccccC
Q 026021 154 AAGAYAKACIEVAGECG--LPVVDLWTKMQQLAD------W----------------------------KTAYLSDGLHL 197 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~--v~~iD~~~~~~~~~~------~----------------------------~~~~~~DgiHp 197 (244)
....||..+.+-.++.+ +..+|.+..++..-. + .++++.|.+||
T Consensus 238 ~t~~~Na~L~~~L~~~g~nIi~iD~~~llk~im~nPa~fGlant~~~~c~~~~~~~~~~a~~p~~~~~~~~ylFaD~vHP 317 (370)
T COG3240 238 ATIAFNASLTSQLEQLGGNIIRIDTYTLLKEIMTNPAEFGLANTTAPACDATVSNPACSASLPALCAAPQKYLFADSVHP 317 (370)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEeEhHHHHHHHHhCHHhcCcccCCCcccCcccCCcccccccccccCCccceeeecccCC
Confidence 77789999999888876 788999988776311 0 12788999999
Q ss_pred ChhHHHHHHHHHHHHHhhc
Q 026021 198 NETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 198 n~~G~~~~a~~l~~~l~~~ 216 (244)
|.++|+++|+.+...|...
T Consensus 318 Tt~~H~liAeyila~l~ap 336 (370)
T COG3240 318 TTAVHHLIAEYILARLAAP 336 (370)
T ss_pred chHHHHHHHHHHHHHHhCc
Confidence 9999999999999988553
No 46
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=97.83 E-value=0.00017 Score=57.73 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=84.1
Q ss_pred cCCccEEEEEeccCCCCCCC--------CCC------CCcc-----cChhHHHHHHHHHHHHHHhhCCCceEEEEcCC-C
Q 026021 70 RVSTIAVAVFFGANDACLPD--------RCG------AFQH-----VPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP-P 129 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~--------~~~------~~~~-----~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~-~ 129 (244)
..+.|++||-+|+.-.+... +.+ .... .+.++..+.++.+++.+++.+|+++|++.-.| |
T Consensus 99 l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilTVSPVr 178 (251)
T PF08885_consen 99 LEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILTVSPVR 178 (251)
T ss_pred HHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccch
Confidence 47899999999997663321 111 1112 67788899999999999999999998887554 3
Q ss_pred CChhhhhcCCCCCCCCCCCccchH-HHHHHHHHHHHHHHh-cCCCeeechhHhhhhhhcccccccccccCChhHHHHHHH
Q 026021 130 IDEEARLKHPYVENPTGLPERTNE-AAGAYAKACIEVAGE-CGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFE 207 (244)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~-~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~ 207 (244)
.... .... ..-..|. .-..+..++.++++. .++-|..-|..+.+.......+..|.+|||+.|-..+-+
T Consensus 179 l~~T-~~~~--------d~~~an~~SKs~Lr~a~~~l~~~~~~v~YFPSYEiv~d~lrdyrfy~~D~~Hps~~aV~~I~~ 249 (251)
T PF08885_consen 179 LIAT-FRDR--------DGLVANQYSKSTLRAAAHELVRAFDDVDYFPSYEIVMDELRDYRFYAEDMRHPSPQAVDYIWE 249 (251)
T ss_pred hhcc-cccc--------cchhhhhhhHHHHHHHHHHHHhcCCCceEcchHhhccCcccccccccccCCCCCHHHHHHHHh
Confidence 3221 1110 0111111 222455666666665 457788888887765544457889999999998776654
No 47
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes. In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.
Probab=97.50 E-value=0.0034 Score=50.74 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=96.5
Q ss_pred hHHHHHHhhccccceEeeccCCcchHHHH---------------------------HHHHhhccccCCCcccccccCCcc
Q 026021 22 WGASLAHHFSRTVDVVLRGYSGYNTRWAV---------------------------KVMERVLPAANGESESERERVSTI 74 (244)
Q Consensus 22 ~~~~l~~~~~~~~~v~n~g~~G~~~~~~~---------------------------~~l~~~~~~~~~~~~~~~~~~~pd 74 (244)
+...|.+.++.++-+++.+.+|.+..... ..+...+.... .....
T Consensus 74 F~~~l~~~~~~pVglI~~a~GGt~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~i~~~~--------~~~i~ 145 (255)
T PF03629_consen 74 FGKELQKALGVPVGLINCAWGGTSIEAWMPGESLEWDPELKAWLYKTYAQNKGYPGALYNAMIAPLK--------AYGIK 145 (255)
T ss_dssp HHHHHHHCCTCEEEEEEEE-TT-BGGGGSTTSTTEE-TT--B-STT---------SHHHHHHHHHHH--------HHEEE
T ss_pred HHHHHhhcCCCcEEEEecccCCeehhhcCCcccccccccccccccccccccchhhHHHHHHHHHHHh--------ccceE
Confidence 56777777777789999999996544111 11111111110 24678
Q ss_pred EEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCChhhhhcCCCCCCCCCCCccch
Q 026021 75 AVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRW--PNTLVLLITPPPIDEEARLKHPYVENPTGLPERTN 152 (244)
Q Consensus 75 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~--p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (244)
-|+..=|.+|. .. ..|...+..+|+.+|+.. ++.+++++..++......... ...
T Consensus 146 gvlW~QGEsD~-~~-----------~~Y~~~l~~li~~~R~~~~~~~lPf~~~ql~~~~~~~~~~~-----------~~~ 202 (255)
T PF03629_consen 146 GVLWYQGESDA-NA-----------EAYRELLKALIEDWRADWGDPDLPFVIGQLSPYNGTNNEPA-----------GIN 202 (255)
T ss_dssp EEEEE--GGGS-SC-----------TCHHHHHHHHHHHHHHHTT-TTS-EEEEE-SCCCTTCGHHC-----------CT-
T ss_pred EEEEeCCCCCC-CH-----------HHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcccCCCCcc-----------ccc
Confidence 89999999999 31 289999999999999986 788999998877654322110 012
Q ss_pred HHHHHHHHHHHHHHHh-cCCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 153 EAAGAYAKACIEVAGE-CGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~-~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
.....+++++++++++ .++.+++... ..|..|+++++++.+++.++....+
T Consensus 203 ~~~~~vr~aQ~~~~~~~~~~~~v~t~d------------~~~~~~i~~~~~~~~G~R~a~~al~ 254 (255)
T PF03629_consen 203 EGWAEVREAQRRVAEEDPNTGMVSTSD------------LGDPDDIHPAGKRELGERLAEAALR 254 (255)
T ss_dssp TTHHHHHHHHHHHHHHSTTEEEEE-TT-------------B-TTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCEEEEEccC------------CCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 3566888888998876 4566665421 3677788999999999999988765
No 48
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=94.37 E-value=0.3 Score=40.75 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCCh-hhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCC-CeeechhHhh
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDE-EARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGL-PVVDLWTKMQ 181 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v-~~iD~~~~~~ 181 (244)
..++.+++.++++ ++.|+.+.+|-.+. ..... -.-+....|...++.-.+..|. .+.|+.
T Consensus 295 ~Dlqlll~~f~ka--gadv~FV~~PvNgkW~dYtG------------~~k~~~q~~y~Kik~Ql~sqGF~~iaDfs---- 356 (415)
T COG3966 295 QDLQLLLDTFKKA--GADVIFVIIPVNGKWYDYTG------------LNKDGRQAYYKKIKSQLRSQGFTQIADFS---- 356 (415)
T ss_pred ccHHHHHHHHHhc--CCCeEEEecCCCCceecccC------------cCHHHHHHHHHHHHHHHHHcCceeehhhh----
Confidence 4788999999998 45688877764432 21111 1123455666666666667787 566652
Q ss_pred hhhhcccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 182 QLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 182 ~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
..+...++..|.||..-+|.-.+=++|.+.++..
T Consensus 357 -~~~~epyfm~DtIHlGWkGWv~~Dkai~~F~ktp 390 (415)
T COG3966 357 -DDGYEPYFMKDTIHLGWKGWVAFDKAIAKFMKTP 390 (415)
T ss_pred -ccCCCcceeccceeecchhHHHHHHHHHHHhcCC
Confidence 2234568999999999999999999999999763
No 49
>PF14286 DHHW: DHHW protein
Probab=92.91 E-value=0.85 Score=39.11 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhh
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQL 183 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~ 183 (244)
..+...|..+.+..++.+|.++.+|.-........+. . ..........+.+.+... .+|.+||++..+..+
T Consensus 154 ~~~a~~in~~a~~l~~~~vy~mlvPta~~i~~~~~~~-----~---~~~~dq~~~i~~~~~~L~-~~I~~ID~~~~L~~h 224 (378)
T PF14286_consen 154 DKYASAINSFAKKLPNINVYFMLVPTASEIYLPDLPK-----Y---APSYDQKQNIDYIYSMLD-KNIKFIDVYDTLKKH 224 (378)
T ss_pred HHHHHHHHHHHHHCCCCceEEEEccChhhhcCccccc-----h---hccccHHHHHHHHHHHhh-cCceEEehHHHHhhc
Confidence 3444455556666678889999888554332221110 0 001112222233332222 379999999999886
Q ss_pred hhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 184 ADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 184 ~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
..-. .+..-..|+|..|.-..++.+++.+
T Consensus 225 k~E~-iYyrTDHHWt~~GAyyay~~~~~~~ 253 (378)
T PF14286_consen 225 KDEY-IYYRTDHHWTTLGAYYAYQEFAKSM 253 (378)
T ss_pred cccc-eEeeccCCcccchHHHHHHHHHHHc
Confidence 5432 4555558999999888888887765
No 50
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=90.56 E-value=2.8 Score=29.41 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=53.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhcc-ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSR-TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
+|.++|.|.. ...|...+.+.+.. .+.++-..-.+..... ...+..+.+. +.++|+++|...
T Consensus 2 siAVvGaS~~-----~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G-~~~y~sl~e~----------p~~iDlavv~~~- 64 (116)
T PF13380_consen 2 SIAVVGASDN-----PGKFGYRVLRNLKAAGYEVYPVNPKGGEILG-IKCYPSLAEI----------PEPIDLAVVCVP- 64 (116)
T ss_dssp EEEEET--SS-----TTSHHHHHHHHHHHTT-EEEEESTTCSEETT-EE-BSSGGGC----------SST-SEEEE-S--
T ss_pred EEEEEcccCC-----CCChHHHHHHHHHhCCCEEEEECCCceEECc-EEeeccccCC----------CCCCCEEEEEcC-
Confidence 8999999987 24565555554432 2344443333322111 1112222221 389999999863
Q ss_pred CCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHH
Q 026021 83 NDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKAC 162 (244)
Q Consensus 83 ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (244)
.....++++++.+.+ ++-+|+.+- ..++.+
T Consensus 65 --------------------~~~~~~~v~~~~~~g--~~~v~~~~g----------------------------~~~~~~ 94 (116)
T PF13380_consen 65 --------------------PDKVPEIVDEAAALG--VKAVWLQPG----------------------------AESEEL 94 (116)
T ss_dssp --------------------HHHHHHHHHHHHHHT---SEEEE-TT----------------------------S--HHH
T ss_pred --------------------HHHHHHHHHHHHHcC--CCEEEEEcc----------------------------hHHHHH
Confidence 455666777777764 456666652 344777
Q ss_pred HHHHHhcCCCeee
Q 026021 163 IEVAGECGLPVVD 175 (244)
Q Consensus 163 ~~~a~~~~v~~iD 175 (244)
.+.|+++++.++-
T Consensus 95 ~~~a~~~gi~vig 107 (116)
T PF13380_consen 95 IEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHTT-EEEE
T ss_pred HHHHHHcCCEEEe
Confidence 8888889998874
No 51
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.03 E-value=5.2 Score=35.30 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcc--cccccccccCChh-HHHHHHHHHHHHHhh
Q 026021 151 TNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWK--TAYLSDGLHLNET-GNRVVFEEVVMKLKT 215 (244)
Q Consensus 151 ~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~--~~~~~DgiHpn~~-G~~~~a~~l~~~l~~ 215 (244)
..+.-.++.+.+.++|++++++++|-...+.+.+... +.--.|-.|.|+. |-+++++.+...|..
T Consensus 206 ~Ia~RarLIArV~aiAaR~dVp~vDPt~Lm~dwGQaRaLe~~GlDltHYTP~Fa~~iv~~~fkg~in~ 273 (831)
T PRK15180 206 VILSRSRLIKNVDTIAARMDIPCVNPTNLMEKWGQKRALEKNGDDLTHYTDMFGDAIVAAIFKGVINN 273 (831)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcccCchhhhcccchhhcccCCCCCcccCChHHHHHHHHHHHhcccCC
Confidence 3345557888899999999999999988876643211 1233556799995 666666666666654
No 52
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=83.26 E-value=19 Score=30.42 Aligned_cols=144 Identities=13% Similarity=0.019 Sum_probs=80.2
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcC---------CC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKH---------PY 140 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~---------~~ 140 (244)
...||.| ++| |.+...-..+.......+.+..-+...++.+|+..|+++|+|-.-.+.+.....-+ .+
T Consensus 123 G~~pd~V--QVG-NEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~ 199 (332)
T PF07745_consen 123 GVTPDMV--QVG-NEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDF 199 (332)
T ss_dssp T--ESEE--EES-SSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-
T ss_pred CCCccEE--EeC-ccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCc
Confidence 4678887 555 66533222222335567889999999999999999999999987765543221111 00
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHhcC--CCeeechhHhhhh-hh-cc----cccccccccCChhHHHHHHHHHHHH
Q 026021 141 VENPTGLPERTNEAAGAYAKACIEVAGECG--LPVVDLWTKMQQL-AD-WK----TAYLSDGLHLNETGNRVVFEEVVMK 212 (244)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--v~~iD~~~~~~~~-~~-~~----~~~~~DgiHpn~~G~~~~a~~l~~~ 212 (244)
+--+...-...+..+..+...+..++++++ |-++.+--.+... .+ .. ......++=.|++|.+.+-..|.+.
T Consensus 200 DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~ 279 (332)
T PF07745_consen 200 DVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINA 279 (332)
T ss_dssp SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHH
Confidence 000000001222256677777777777655 4455554333311 11 10 0113557778999999999999999
Q ss_pred Hhhc
Q 026021 213 LKTE 216 (244)
Q Consensus 213 l~~~ 216 (244)
++..
T Consensus 280 v~~~ 283 (332)
T PF07745_consen 280 VKNV 283 (332)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 9884
No 53
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=81.59 E-value=0.79 Score=34.94 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCCeEEEEcccccccccCCCCh------------HHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCccccc
Q 026021 1 MRPKIYLFGDSITESSFTYGGW------------GASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESER 68 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~------------~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~ 68 (244)
|+.+|+++|.|......-..|+ ...|..+-+..+++-- ...-.....+++-++.
T Consensus 1 ~~~KvL~iGESW~~~~~H~KGfDqF~s~~y~~GAd~Ll~~Lr~g~~dv~y-----MpAH~~q~~FPqtme~--------- 66 (254)
T COG5426 1 MTKKVLLIGESWVSHATHSKGFDQFTSVTYHEGADPLLKALRGGEYDVTY-----MPAHDAQEKFPQTMEG--------- 66 (254)
T ss_pred CceeEEEecceeeeeeeeccccccCcceecccCchHHHHHHhCCCcceEE-----echHHHHHhcchhhhh---------
Confidence 6789999999987321101111 1222222222232221 1222334455555554
Q ss_pred ccCCccEEEEE-eccCCCCCCC
Q 026021 69 ERVSTIAVAVF-FGANDACLPD 89 (244)
Q Consensus 69 ~~~~pd~vii~-~G~ND~~~~~ 89 (244)
....|.|||+ +|+|-+....
T Consensus 67 -L~~YDaivlSDiGsNt~LL~~ 87 (254)
T COG5426 67 -LDAYDAIVLSDIGSNTLLLQP 87 (254)
T ss_pred -hcccceEEEeecCCceeeccc
Confidence 3677888887 8999886643
No 54
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.74 E-value=16 Score=25.34 Aligned_cols=44 Identities=11% Similarity=-0.100 Sum_probs=31.7
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCC-CceEEEEcCCCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWP-NTLVLLITPPPI 130 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p-~~~vil~~~~~~ 130 (244)
..+||+|.|+.- + ........++++.+++..| ++.|++.+.++.
T Consensus 48 ~~~pdvV~iS~~-~----------------~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 48 EEDADAIGLSGL-L----------------TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HcCCCEEEEecc-c----------------cccHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 389999988753 1 1225777889999999887 777777776544
No 55
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=79.21 E-value=12 Score=30.91 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=43.3
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhcc-ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSR-TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
++++.||--+ . +. ..|.+.... +.+|...++=|..+......++ .-+|.+.+|+.|-
T Consensus 184 s~LlTGD~e~-~----~E--~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~---------------~v~Pk~AliS~G~ 241 (293)
T COG2333 184 SFLLTGDLEE-K----GE--KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLE---------------AVKPKVALISSGR 241 (293)
T ss_pred eEEEecCCCc-h----hH--HHHHhhCCCccceEEEeccCCccccCcHHHHH---------------hcCCcEEEEEeec
Confidence 6888888877 2 22 344444432 3679999988887776666666 4889999999999
Q ss_pred -CCCCC
Q 026021 83 -NDACL 87 (244)
Q Consensus 83 -ND~~~ 87 (244)
|....
T Consensus 242 ~N~ygh 247 (293)
T COG2333 242 NNRYGH 247 (293)
T ss_pred cCCCCC
Confidence 55543
No 56
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=78.37 E-value=35 Score=27.82 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=61.3
Q ss_pred CeEEEEcccccccccCC---CChHHHHHHhhccccceEee----ccCCc--------chHHHHHHHHhhccccCCCcccc
Q 026021 3 PKIYLFGDSITESSFTY---GGWGASLAHHFSRTVDVVLR----GYSGY--------NTRWAVKVMERVLPAANGESESE 67 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~---~~~~~~l~~~~~~~~~v~n~----g~~G~--------~~~~~~~~l~~~~~~~~~~~~~~ 67 (244)
+||+.+=.+.. .|+.. ..++-++. +=.++++|. -+.|+ +...+.+.++....+.
T Consensus 10 kRVLSIQShVv-hGYVGNkaAtFPLQll---GwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn------- 78 (308)
T KOG2599|consen 10 KRVLSIQSHVV-HGYVGNKAATFPLQLL---GWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNN------- 78 (308)
T ss_pred ccEEEEeeeee-eeeccccccccchhhh---ccccccccceeeccccCCccccccccCHHHHHHHHHHHhhcc-------
Confidence 39999999999 77653 24554432 211333332 23332 3344556666665543
Q ss_pred cccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChh
Q 026021 68 RERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEE 133 (244)
Q Consensus 68 ~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~ 133 (244)
..++|.|.- +..+-..|.+.+-.+++.+++.+|+ ++|+.-|-+++.
T Consensus 79 --~~~Y~~vLT----------------GY~~n~~~l~~i~~iv~~lk~~np~--~~wv~DPVmGDn 124 (308)
T KOG2599|consen 79 --LNKYDAVLT----------------GYLPNVSFLQKIADIVKKLKKKNPN--LTWVCDPVMGDN 124 (308)
T ss_pred --ccccceeee----------------eccCChhHHHHHHHHHHHHHhcCCC--eEEEeCccccCC
Confidence 244444421 2445678899999999999999887 778877766654
No 57
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.81 E-value=9 Score=29.78 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHhhCC-CceEEEEcCC-CCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 100 HEYKHNLHSIVSFLKNRWP-NTLVLLITPP-PIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 100 ~~~~~~l~~~v~~~~~~~p-~~~vil~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
+.--+++...++.+.+..+ ++.++|++.- .+.. . + ..-.+.-.++|.++|+.|..+-
T Consensus 97 e~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~--~------------------R-~V~~e~ge~lA~e~G~~F~EtS 155 (207)
T KOG0078|consen 97 EKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE--K------------------R-QVSKERGEALAREYGIKFFETS 155 (207)
T ss_pred hHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc--c------------------c-cccHHHHHHHHHHhCCeEEEcc
Confidence 4445677778888888754 6777777652 1111 0 0 0112566778999999998863
No 58
>PRK08156 type III secretion system protein SpaS; Validated
Probab=77.27 E-value=40 Score=28.82 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHh-----hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 103 KHNLHSIVSFLKN-----RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 103 ~~~l~~~v~~~~~-----~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
+...+++-+++.. .-|++.|+++.|..+--+-.. ..+...-+.-+.+-.+.....++++|++++|+++.--
T Consensus 229 K~r~R~~~re~a~~rm~~~Vp~AdVVItNPTH~AVALkY----d~~~~~AP~VvAKG~d~~A~~IreiA~e~~VPiven~ 304 (361)
T PRK08156 229 KSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYF----NPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDI 304 (361)
T ss_pred HHHHHHHHHHHHHhHHhccCCCCcEEEECCCeEEEEEEe----cCCCCCCCEEEEecCcHHHHHHHHHHHHCCCCEeeCH
Confidence 4445554444433 358999999998755322111 1111122334445566888999999999999999854
Q ss_pred hHhhhhhhcccccccccccCChhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q 026021 178 TKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKTEGLSLENLPVDLPMISEIDPNDP 238 (244)
Q Consensus 178 ~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~~~~~~~~~~~~p~~~~~~~~~~ 238 (244)
..=..-.. ..-.|.. --++=|+.+|+.|.-..+.... .-+.+-|--+++.+-.|
T Consensus 305 pLARaLY~---~vevg~~-IP~ely~AVA~iLa~v~~l~~~---g~~~~~~~~~~~~~~~~ 358 (361)
T PRK08156 305 KLARRLYK---THRRYSF-VSLEDLDEVLRLLIWLEQVENA---GMGVPQPQENEVRSAEP 358 (361)
T ss_pred HHHHHHHH---hCCCCCc-CCHHHHHHHHHHHHHHHHHHhc---CCCCCCccccccccccc
Confidence 33221111 0112222 2345688888887665544311 44445555567766655
No 59
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=77.04 E-value=31 Score=30.48 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=54.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCC--hhhhhcCCCCCCCCCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPID--EEARLKHPYVENPTGL 147 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~--~~~~~~~~~~~~~~~~ 147 (244)
..+|.+|+++ |-..- -..-.++.+.+.++++|+.+|+++.+ |+++|..|.+ +..... +
T Consensus 252 ~dkPklVfFf----DEAHL-----LF~da~kall~~ieqvvrLIRSKGVG--v~fvTQ~P~DiP~~VL~Q---------L 311 (502)
T PF05872_consen 252 LDKPKLVFFF----DEAHL-----LFNDAPKALLDKIEQVVRLIRSKGVG--VYFVTQNPTDIPDDVLGQ---------L 311 (502)
T ss_pred CCCceEEEEE----echhh-----hhcCCCHHHHHHHHHHHHHhhccCce--EEEEeCCCCCCCHHHHHh---------h
Confidence 5889999877 22110 01224789999999999999998655 8888876653 222221 1
Q ss_pred CccchHHHHHH----HHHHHHHHHhcC-CCeeechhHhhh
Q 026021 148 PERTNEAAGAY----AKACIEVAGECG-LPVVDLWTKMQQ 182 (244)
Q Consensus 148 ~~~~~~~~~~~----~~~~~~~a~~~~-v~~iD~~~~~~~ 182 (244)
..++...+..| -.+++..|+... -+.+|+-..+..
T Consensus 312 GnrIQHaLRAfTP~DqKavk~aa~tfr~np~~d~~~~it~ 351 (502)
T PF05872_consen 312 GNRIQHALRAFTPKDQKAVKAAAETFRPNPAFDTEEVITE 351 (502)
T ss_pred hhHHHHHHhcCCHhHHHHHHHHHHhCCCCccccHHHHHhh
Confidence 22333333333 244455555433 356777666654
No 60
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=76.47 E-value=19 Score=31.77 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCeeec
Q 026021 157 AYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 157 ~~~~~~~~~a~~~~v~~iD~ 176 (244)
...+.+.++|+++++.++--
T Consensus 108 ~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 108 ELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred HHHHHHHHHHHHcCCEEEec
Confidence 34577888899988887643
No 61
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=74.93 E-value=83 Score=30.36 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhc-CCCeeechhHhh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGEC-GLPVVDLWTKMQ 181 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~iD~~~~~~ 181 (244)
...++.+|+..+++ +.+||-+- +|.++.....-.++.- + -.....+.+.+.+.++.+++ ++.++|-+. +.
T Consensus 807 ~~~l~~~i~~~~~~--~~~~ig~~-~p~~p~y~~t~~fg~~--g---~~rs~a~~~~~~~~~~~~~y~~f~~~denk-~g 877 (912)
T TIGR02171 807 MNSLKAFIDETAKK--GVKVIGTI-FPQSPGYKNTGSFGRY--G---PRRSIAKKIIDSFKKMEKTYPHFILFDENK-DG 877 (912)
T ss_pred HHHHHHHHHHHHhC--CCEEEEEE-CCCCCCccccCccccc--C---cchhhHHHHHHHHHHHHhhCCceEEEecCc-CC
Confidence 45667777777776 44444443 3333332222111111 1 11233456666677776664 566777532 22
Q ss_pred hhhhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 182 QLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 182 ~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
.+ +....+..|.-|++..|...+...|=..|++
T Consensus 878 ~h-dy~~~ma~~~dhl~~~ga~~~t~rldsll~~ 910 (912)
T TIGR02171 878 LH-DYTDDMANNSDHLSDEGAKQFTYRLDSLLKK 910 (912)
T ss_pred cc-cccccccccccccchhhHHHHHHHHHHHHhc
Confidence 21 2344688999999999999999988776654
No 62
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=73.39 E-value=0.34 Score=40.41 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=60.2
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhcc-----ccceEeeccCC-cchHHHHHHHHhhccccCCCccccccc-CCccEE
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSR-----TVDVVLRGYSG-YNTRWAVKVMERVLPAANGESESERER-VSTIAV 76 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~-----~~~v~n~g~~G-~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~pd~v 76 (244)
+++++|||..+.. ..+|...+.+++.. ++.++=.|.+. .........+-.+-. . ..-...
T Consensus 115 q~l~~gds~~~~~--s~~W~~~Y~~r~~~~i~~~~vp~~wvglPd~~~~~~~~~d~l~~n~-----------~~yr~~a~ 181 (327)
T PF04311_consen 115 QQLRIGDSQMQFR--SPEWLEEYGKRIAKVIRELKVPSIWVGLPDYFRWPKMSADMLALND-----------ILYRDAAE 181 (327)
T ss_pred cccccCCcccccC--CHHHHHHHHHHHHHHHHhcCCCeEEEeCCcccCChhhhHHHHHhcc-----------hhHHHHHH
Confidence 6788999988443 35687776666532 23444455552 222211111111111 1 223444
Q ss_pred EEEeccCCCCCCCC-----CCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 77 AVFFGANDACLPDR-----CGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 77 ii~~G~ND~~~~~~-----~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
+..+|.||.+..-- ........-..++....+.|...++. .-.++++..+-.
T Consensus 182 ~~g~~fvDiwdF~De~G~~~~~Gpd~~gq~~rlR~~dgl~ft~A~--rkla~~ve~pi~ 238 (327)
T PF04311_consen 182 KAGGGFVDIWDFVDENGRYLAFGPDEWGQIYRLRSNDGLNFTKAK--RKLAFYVEKPIM 238 (327)
T ss_pred HhcCccccccccccCCCCcccCCCCccchHhhhhhhcceeeeecc--cceEEEechHhh
Confidence 56778899865211 11123445567888888888887773 345777776543
No 63
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=71.40 E-value=8.4 Score=26.40 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 026021 99 LHEYKHNLHSIVSFLKNRWPNTLVLLITPPPID 131 (244)
Q Consensus 99 ~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~ 131 (244)
.+.|.+||.++++.+++. |+.+|-++.-+..-
T Consensus 3 S~~Fv~Nm~~Iv~~l~~~-~~~~I~iv~~~DdI 34 (103)
T PF06935_consen 3 SPEFVENMKKIVERLRND-PGEPIEIVDGPDDI 34 (103)
T ss_pred CHHHHHHHHHHHHHHHHC-CCCCEEEEECcCHH
Confidence 368999999999999873 78889999887543
No 64
>cd07182 RNaseH_typeII_bacteria_HII_like bacterial Ribonuclease HII-like. Bacterial ribonuclease (RNase) HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII- double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype in E. coli.
Probab=70.00 E-value=31 Score=26.21 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=27.8
Q ss_pred CCeeechhHhhhhhhcccccccccccCChhHHHHHHHH----HHHHHhhc
Q 026021 171 LPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEE----VVMKLKTE 216 (244)
Q Consensus 171 v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~----l~~~l~~~ 216 (244)
..++|.+...............|..||.-+..-++|+. ++..|.+.
T Consensus 92 ~v~iD~~~~~~~~~~~~~~~KaD~~~~~VaAASIvAKv~RD~~m~~l~~~ 141 (179)
T cd07182 92 YVLVDGNRLPPLPIPQEAIVKGDAKSASIAAASILAKVTRDRLMIELDKK 141 (179)
T ss_pred EEEECCcCCCCCCCCeEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677654322111222345689999999999999954 44444443
No 65
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=69.62 E-value=11 Score=27.33 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=32.7
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhH---HHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHE---YKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~---~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
..+.|+||+..|.--. + .....+. =..-++++.+.+.+..|++.+++++.|
T Consensus 67 ~~~aDivvitag~~~~--~------g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 67 LKDADIVVITAGVPRK--P------GMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp GTTESEEEETTSTSSS--T------TSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred cccccEEEEecccccc--c------cccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 4678999999885311 1 1112233 345677778888888999988887664
No 66
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=68.34 E-value=21 Score=24.60 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=31.3
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
.+||+|.+..-. ......+.++++.+|+..|++++++-++.+
T Consensus 50 ~~pd~V~iS~~~-----------------~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 50 ERPDVVGISVSM-----------------TPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp TTCSEEEEEESS-----------------STHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred CCCcEEEEEccC-----------------cCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 799998887531 112456688888899999999888888743
No 67
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=67.28 E-value=0.4 Score=37.08 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=89.5
Q ss_pred cceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec-cCCCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 026021 34 VDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG-ANDACLPDRCGAFQHVPLHEYKHNLHSIVSF 112 (244)
Q Consensus 34 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G-~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 112 (244)
..-.| |+++.+++....+++..--. ...+..++.+.| +|--. -++.+....+...+..
T Consensus 51 ~~~cN-Gh~~c~t~~v~~~~~N~~~g----------~~c~kc~~g~~GdtN~g~----------c~~~~~~g~~~~~~~~ 109 (217)
T KOG1388|consen 51 LCQCN-GHSDCNTQHVCWRCENGTTG----------AHCEKCIVGFYGDTNGGK----------CQPCDCNGGASACVTL 109 (217)
T ss_pred HHHhc-CCCCcccceeeeeccCcccc----------ccCCceEEEEEecCCCCc----------cCHhhhcCCeeeeecc
Confidence 45667 99999888766554332221 477889999999 55542 2566777778888888
Q ss_pred HHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhh-cccccc
Q 026021 113 LKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLAD-WKTAYL 191 (244)
Q Consensus 113 ~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~-~~~~~~ 191 (244)
..+..|++++|+...-|..+..-+.. +...+.+ .|-+.+.+. ...+.+.+....+..... .....+
T Consensus 110 ~~~c~c~~kgvvgd~c~~~e~~N~~r-------~~~~kgt----cyy~l~id~--~ftf~l~~~d~~fv~sd~~i~~~d~ 176 (217)
T KOG1388|consen 110 TGKCFCTTKGVVGDLCPKCEVPNRYR-------GKPLKGT----CYYELLIDG--QFTFHLLQEDDGFVTSDNFISTHDM 176 (217)
T ss_pred CCccccccceEecccCcccccccccc-------cCccccc----eeeeeeccc--ccccceeecCCCceeeccccccCCc
Confidence 88889999999998877765532110 0011111 111111110 122334443322222111 112235
Q ss_pred cccccCChhHHHHHHHHHHHHHhhc
Q 026021 192 SDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 192 ~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
.|-.|.+.+|+..+...+++.+...
T Consensus 177 fd~~~~~~~g~~~ic~~~~~l~~~~ 201 (217)
T KOG1388|consen 177 FDYLHLTNAGNTFICNPLWELYFSL 201 (217)
T ss_pred ccchhhccCCCceecchHHHHHhhh
Confidence 6789999999999999888887665
No 68
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=66.80 E-value=11 Score=30.85 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=47.2
Q ss_pred CeEEEEcccccccccCCCChHHHHHHhhcc-ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 3 PKIYLFGDSITESSFTYGGWGASLAHHFSR-TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
=||+++|.|=. ....|.+.+.. .+.++.....-..... ...+.+++. ..+||+||.+.|
T Consensus 1 MriLI~GasG~--------lG~~l~~~l~~~~~~v~~~~r~~~dl~d-~~~~~~~~~-----------~~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGF--------LGSALARALKERGYEVIATSRSDLDLTD-PEAVAKLLE-----------AFKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSH--------HHHHHHHHHTTTSEEEEEESTTCS-TTS-HHHHHHHHH-----------HH--SEEEE---
T ss_pred CEEEEECCCCH--------HHHHHHHHHhhCCCEEEEeCchhcCCCC-HHHHHHHHH-----------HhCCCeEeccce
Confidence 08999997655 23455555543 2445554333222222 234455555 378999999987
Q ss_pred cCCCCCCCCCCCCcccChhHHHH---HHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 82 ANDACLPDRCGAFQHVPLHEYKH---NLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 82 ~ND~~~~~~~~~~~~~~~~~~~~---~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..+.... ...+...+.- ....+.+.+++. +++++.++.-.+
T Consensus 61 ~~~~~~c------e~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~STd~V 104 (286)
T PF04321_consen 61 YTNVDAC------EKNPEEAYAINVDATKNLAEACKER--GARLIHISTDYV 104 (286)
T ss_dssp ---HHHH------HHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEEEGGG
T ss_pred eecHHhh------hhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEeeccEE
Confidence 7654110 0112344443 344555566664 577888876543
No 69
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=65.62 E-value=37 Score=22.57 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=29.2
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
..||++++-+...|. +..++++.+++..+.+++++++..
T Consensus 42 ~~~d~iiid~~~~~~-------------------~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 42 HPPDLIIIDLELPDG-------------------DGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp STESEEEEESSSSSS-------------------BHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cCceEEEEEeeeccc-------------------cccccccccccccccccEEEecCC
Confidence 789999999766554 124566777777788999999963
No 70
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=65.56 E-value=91 Score=27.02 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHh-----hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 103 KHNLHSIVSFLKN-----RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 103 ~~~l~~~v~~~~~-----~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
+...+++-+++.. .-|++.|+++.|..+.-+-.. ..+...-+.-+.+-.......++++|++++|+++.--
T Consensus 241 K~r~Rq~~re~a~~~m~~~V~~AdVVItNPTH~AVALkY----~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPiven~ 316 (386)
T PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQY----NESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAP 316 (386)
T ss_pred HHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEEEe----CCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCcEEeCH
Confidence 4455554444433 358999999998765332211 1111122334445566888999999999999999854
Q ss_pred hHhhhhhhcccccccccccCChhHHHHHHHHHHHHHh
Q 026021 178 TKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLK 214 (244)
Q Consensus 178 ~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~ 214 (244)
..-..-.. ..-. |=--.++-|+.+|+.|.-..+
T Consensus 317 pLARaLy~---~~ev-g~~IP~ely~AVA~ILa~V~~ 349 (386)
T PRK12468 317 PLARALFR---HSEV-GQHIPATLYAAVAEVLAWVYQ 349 (386)
T ss_pred HHHHHHHH---hCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 33222111 0111 122467788999988866544
No 71
>PRK03670 competence damage-inducible protein A; Provisional
Probab=64.83 E-value=23 Score=28.57 Aligned_cols=66 Identities=17% Similarity=0.050 Sum_probs=40.1
Q ss_pred CCCeEEEEcccccccccCCCC---hHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEE
Q 026021 1 MRPKIYLFGDSITESSFTYGG---WGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVA 77 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~---~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vi 77 (244)
|+--|+.+||.+. .|...+. |....-..++ +++....+-+.....+...+.+... ...|+||
T Consensus 1 m~a~Ii~iGdEll-~G~i~dtN~~~la~~L~~~G--~~v~~~~iV~Dd~~~I~~~l~~a~~------------~~~DlVI 65 (252)
T PRK03670 1 MFAEIITVGDELL-TGNTVDSNSAFIAQKLTEKG--YWVRRITTVGDDVEEIKSVVLEILS------------RKPEVLV 65 (252)
T ss_pred CEEEEEEeCCcCc-CCeEEehhHHHHHHHHHHCC--CEEEEEEEcCCCHHHHHHHHHHHhh------------CCCCEEE
Confidence 6667999999998 5543222 3333222333 6666667777666655555554333 4578888
Q ss_pred EEec
Q 026021 78 VFFG 81 (244)
Q Consensus 78 i~~G 81 (244)
+.-|
T Consensus 66 ttGG 69 (252)
T PRK03670 66 ISGG 69 (252)
T ss_pred ECCC
Confidence 8754
No 72
>PRK05086 malate dehydrogenase; Provisional
Probab=63.50 E-value=25 Score=29.40 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=35.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHH---HHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKH---NLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|..--. ...+.+.+.. -++.+++.+++.+|++.|++++.|
T Consensus 67 l~~~DiVIitaG~~~~~--------~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 67 LEGADVVLISAGVARKP--------GMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred cCCCCEEEEcCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 35699999999973221 1234555555 788899999999998766666655
No 73
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=63.47 E-value=67 Score=24.78 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=30.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCC--CceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWP--NTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p--~~~vil~~~~ 128 (244)
..+||+|.++.-. ......++++++.+++..+ +++|++-+.+
T Consensus 131 ~~~~d~v~lS~~~-----------------~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 131 EHKPDILGLSALM-----------------TTTMGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred HcCCCEEEEeccc-----------------cccHHHHHHHHHHHHHCCCCcCCeEEEECCc
Confidence 3889988887531 1225678999999999976 7777777664
No 74
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=61.64 E-value=67 Score=26.20 Aligned_cols=108 Identities=12% Similarity=-0.033 Sum_probs=54.1
Q ss_pred cceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHH
Q 026021 34 VDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFL 113 (244)
Q Consensus 34 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 113 (244)
.-++|.+++|.+. .++++-+ .+||+++|.....+--.--.....-.+ ..++..+=..++..+
T Consensus 65 aIVv~q~vpGt~~-----af~kIke------------kRpDIl~ia~~~~EDp~~i~~~aDi~~-~~D~~~~G~~i~~~A 126 (275)
T PF12683_consen 65 AIVVSQAVPGTAE-----AFRKIKE------------KRPDILLIAGEPHEDPEVISSAADIVV-NPDEISRGYTIVWAA 126 (275)
T ss_dssp EEEEE-SS---HH-----HHHHHHH------------H-TTSEEEESS--S-HHHHHHHSSEEE-E--HHHHHHHHHHHH
T ss_pred EEEEeCCCcchHH-----HHHHHHh------------cCCCeEEEcCCCcCCHHHHhhccCeEe-ccchhhccHHHHHHH
Confidence 4577778888433 3444444 789999998765553000000000001 123455556677888
Q ss_pred HhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhH
Q 026021 114 KNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTK 179 (244)
Q Consensus 114 ~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~ 179 (244)
++.+ ++.++.-.+|..-. .+.+....+.+++.|++.|+.|+....+
T Consensus 127 k~mG--AktFVh~sfprhms------------------~~~l~~Rr~~M~~~C~~lGi~fv~~taP 172 (275)
T PF12683_consen 127 KKMG--AKTFVHYSFPRHMS------------------YELLARRRDIMEEACKDLGIKFVEVTAP 172 (275)
T ss_dssp HHTT---S-EEEEEETTGGG------------------SHHHHHHHHHHHHHHHHCT--EEEEEE-
T ss_pred HHcC--CceEEEEechhhcc------------------hHHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 8875 44444443333211 2466778899999999999999988544
No 75
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=61.21 E-value=34 Score=27.70 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQ 182 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~ 182 (244)
.+.+.++++.+++.. . +++.|. .-..+.+.+++.|++++++++|+...+..
T Consensus 39 ~~~~~~il~~i~~~~-~--iV~~Tl--------------------------v~~~lr~~l~~~~~~~~i~~~Dll~~~l~ 89 (255)
T PF03618_consen 39 EEQLDEILEEIKEEN-A--IVFYTL--------------------------VDPELREYLEEFCREHGIPCVDLLGPLLS 89 (255)
T ss_pred HHHHHHHHHHHhccC-C--EEEEeC--------------------------CCHHHHHHHHHHHHhcCCCEEeccHHHHH
Confidence 567778888887742 2 777776 22366788899999999999999988765
Q ss_pred h
Q 026021 183 L 183 (244)
Q Consensus 183 ~ 183 (244)
.
T Consensus 90 ~ 90 (255)
T PF03618_consen 90 A 90 (255)
T ss_pred H
Confidence 4
No 76
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=60.52 E-value=92 Score=26.91 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHH---HhcCCCeeechhHh
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVA---GECGLPVVDLWTKM 180 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~v~~iD~~~~~ 180 (244)
..-+.+++++++++.+.-+.+...||.- .......++.... ...-.......|..-|.+++ ++.|+.|-- -.++
T Consensus 104 ~gQrwfL~~Ak~rGV~~f~aFSNSPP~~-MT~NG~~~g~~~~-~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~-IsP~ 180 (384)
T PF14587_consen 104 AGQRWFLKAAKERGVNIFEAFSNSPPWW-MTKNGSASGGDDG-SDNLKPDNYDAFADYLADVVKHYKKWGINFDY-ISPF 180 (384)
T ss_dssp HHHHHHHHHHHHTT---EEEE-SSS-GG-GSSSSSSB-S-SS-S-SS-TT-HHHHHHHHHHHHHHHHCTT--EEE-EE--
T ss_pred HHHHHHHHHHHHcCCCeEEEeecCCCHH-HhcCCCCCCCCcc-ccccChhHHHHHHHHHHHHHHHHHhcCCccce-eCCc
Confidence 4566788999998655444444455442 2222222211100 01111123334444444433 445665432 2333
Q ss_pred hhhh-hcccccccccccCChhHHHHHHHHHHHHHhhcCCCCC
Q 026021 181 QQLA-DWKTAYLSDGLHLNETGNRVVFEEVVMKLKTEGLSLE 221 (244)
Q Consensus 181 ~~~~-~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~~~~~~ 221 (244)
++.. .| ..-...|.|.+.+=...+...|.+.|++.++...
T Consensus 181 NEP~~~W-~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~ 221 (384)
T PF14587_consen 181 NEPQWNW-AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK 221 (384)
T ss_dssp S-TTS-G-G--SS-B----HHHHHHHHHHHHHHHHHHT-S-E
T ss_pred CCCCCCC-CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce
Confidence 3322 23 1234668999999999999999999999877654
No 77
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=60.32 E-value=21 Score=30.52 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHH-----hhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 102 YKHNLHSIVSFLK-----NRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 102 ~~~~l~~~v~~~~-----~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.+...+++-+++. +.-|++.|+++.|..+.-+-... .+...-+.-+.+-.+.....++++|++++||++.-
T Consensus 242 iK~r~Rq~~re~~~~~m~~~V~~AdVVItNPTH~AVAL~Yd----~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPiven 317 (358)
T PRK13109 242 VKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYE----RSENPAPLVVAKGQDLIALKIREIAEENGIPVIED 317 (358)
T ss_pred HHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeEeC----CCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeC
Confidence 3445555555443 34589999999997653322111 11112233344556688899999999999999985
Q ss_pred hhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 177 WTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 177 ~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
-..=..-.. ..-..|- -.++=|+.+|+.|.-..
T Consensus 318 ~pLARaLy~--~~evg~~--IP~ely~AVA~ILa~v~ 350 (358)
T PRK13109 318 KPLARSLYD--AVQVDQV--IPAEFYRPVAQILYFLF 350 (358)
T ss_pred HHHHHHHHH--hCCCCCc--CCHHHHHHHHHHHHHHH
Confidence 333221110 0111112 24567788888775543
No 78
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=59.92 E-value=52 Score=27.40 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQ 182 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~ 182 (244)
..-++.++...++-.|+..|++++.+..+.. ..-+.+++..|++|+|+...+..
T Consensus 117 ~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKS--------------------------tvg~~La~~Lg~~~id~D~~i~~ 170 (309)
T PRK08154 117 RDALSGMLGAGRRAARRRRIALIGLRGAGKS--------------------------TLGRMLAARLGVPFVELNREIER 170 (309)
T ss_pred HHHHHHHHhhhhhccCCCEEEEECCCCCCHH--------------------------HHHHHHHHHcCCCEEeHHHHHHH
Confidence 3444555556666678888999998777655 33444566678888888766654
Q ss_pred h
Q 026021 183 L 183 (244)
Q Consensus 183 ~ 183 (244)
.
T Consensus 171 ~ 171 (309)
T PRK08154 171 E 171 (309)
T ss_pred H
Confidence 3
No 79
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=59.50 E-value=27 Score=28.65 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhC-CCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcC---CCeeec
Q 026021 101 EYKHNLHSIVSFLKNRW-PNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECG---LPVVDL 176 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~-p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---v~~iD~ 176 (244)
--...+..+++.+++-+ |+++|.+++=-.+ ... +..-..+.+..|.+.+++++.+.+ +.|+++
T Consensus 40 laL~~L~~lc~~I~~vY~PGa~v~I~SDG~V----f~D---------llgV~D~~v~~Y~~~Lr~l~~~~~~~~I~f~~l 106 (278)
T PF05141_consen 40 LALRRLNGLCQAIEAVYPPGAKVTIISDGHV----FND---------LLGVPDEEVWAYGEALRELAEEKGLDHIKFFRL 106 (278)
T ss_dssp HHHHHHHHHHHHHHHHSTT-EEEEEE--HHH----HGG---------GTT--HHHHHHHHHHHHHHHHHCT-TTEEEE-G
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEecCcE----ecc---------ccCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCH
Confidence 34578888999998875 8999888864211 111 111344678899999999999977 455555
Q ss_pred hhH
Q 026021 177 WTK 179 (244)
Q Consensus 177 ~~~ 179 (244)
...
T Consensus 107 ~dl 109 (278)
T PF05141_consen 107 EDL 109 (278)
T ss_dssp GG-
T ss_pred HHh
Confidence 544
No 80
>PLN00135 malate dehydrogenase
Probab=59.02 E-value=28 Score=29.07 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=36.1
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhh-CCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNR-WPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~-~p~~~vil~~~~ 128 (244)
....|+|||..|...-. .....+.+ .+-++.+++.+.+. .|++.+++++.|
T Consensus 56 ~~daDiVVitAG~~~k~--------g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNP 110 (309)
T PLN00135 56 CKGVNIAVMVGGFPRKE--------GMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANP 110 (309)
T ss_pred hCCCCEEEEeCCCCCCC--------CCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 47899999999986441 11233333 44578888888885 899988888854
No 81
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=58.94 E-value=24 Score=29.19 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=35.7
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|..... .....+.+ ..-++++++.+++..|++.+++++.|
T Consensus 64 l~~aDiVIitag~p~~~--------~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 64 AADADIVVITAGAPRKP--------GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred hCCCCEEEEcCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 57789999999875331 12233333 34577788888888999998888865
No 82
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=58.48 E-value=49 Score=28.72 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCCeee
Q 026021 157 AYAKACIEVAGECGLPVVD 175 (244)
Q Consensus 157 ~~~~~~~~~a~~~~v~~iD 175 (244)
..-+.+.++|+++++.+|-
T Consensus 192 eeLe~ia~l~~k~~~lvis 210 (420)
T KOG0257|consen 192 EELERIAELCKKHGLLVIS 210 (420)
T ss_pred HHHHHHHHHHHHCCEEEEE
Confidence 3447888999999977654
No 83
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=58.32 E-value=1e+02 Score=25.21 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=44.0
Q ss_pred ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 026021 33 TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSF 112 (244)
Q Consensus 33 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 112 (244)
.+-++..|++|-|.- ..+.. .-|+-=+|.+|-|=-... +.-+.++.++...++++.
T Consensus 7 ~IgvFDSGVGGLsVl------rei~~------------~LP~e~~iY~~D~a~~PY------G~ks~e~I~~~~~~i~~~ 62 (269)
T COG0796 7 PIGVFDSGVGGLSVL------REIRR------------QLPDEDIIYVGDTARFPY------GEKSEEEIRERTLEIVDF 62 (269)
T ss_pred eEEEEECCCCcHHHH------HHHHH------------HCCCCcEEEEecCCCCCC------CCCCHHHHHHHHHHHHHH
Confidence 367899999996553 22222 223333456664433321 345788999999999999
Q ss_pred HHhhCCCceEEEEcC
Q 026021 113 LKNRWPNTLVLLITP 127 (244)
Q Consensus 113 ~~~~~p~~~vil~~~ 127 (244)
+.+++++ ++++..
T Consensus 63 l~~~~ik--~lVIAC 75 (269)
T COG0796 63 LLERGIK--ALVIAC 75 (269)
T ss_pred HHHcCCC--EEEEec
Confidence 9999755 555554
No 84
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=58.03 E-value=32 Score=28.77 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=35.1
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
....|+|||..|..-. + .....+.+ .+-++++.+.+++..|++.+++++.|-
T Consensus 65 ~~daDivvitaG~~~~--~------g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 65 LKGADVVVIPAGVPRK--P------GMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred cCCCCEEEEeCCCCCC--C------CccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 5788999999996422 1 11233333 346677777888888999888887764
No 85
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=57.97 E-value=34 Score=25.71 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=10.8
Q ss_pred cCCccEEEEEec
Q 026021 70 RVSTIAVAVFFG 81 (244)
Q Consensus 70 ~~~pd~vii~~G 81 (244)
...||+|++.+|
T Consensus 97 ~~~pdiv~vglG 108 (171)
T cd06533 97 ASGADILFVGLG 108 (171)
T ss_pred HcCCCEEEEECC
Confidence 489999999998
No 86
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=57.57 E-value=25 Score=29.88 Aligned_cols=103 Identities=19% Similarity=0.143 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHH-----hhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 103 KHNLHSIVSFLK-----NRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 103 ~~~l~~~v~~~~-----~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
+...+++-+++. +.-|++.|+++.|..+.-+-.. ..+...-+.-+.+-.+.....++++|++++|+++.--
T Consensus 234 K~rrR~~~re~~~~~m~~~V~~AdVVItNPTH~AVAL~Y----d~~~~~aP~VvAKG~d~~A~~Ir~iA~e~~VPiven~ 309 (349)
T PRK12721 234 KQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYY----HPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENI 309 (349)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCcEEEEcCCceEEEEEe----CCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCH
Confidence 444444444432 2358999999998755322111 1111122334445566888999999999999999753
Q ss_pred hHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 178 TKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 178 ~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
..=..-.. ..-.| ----++=|+.+|+.+.-..
T Consensus 310 pLARaLY~---~~~vg-~~IP~ely~aVA~ILa~v~ 341 (349)
T PRK12721 310 PLARALFK---EVECG-DYIPETLFEPVAALLRMVM 341 (349)
T ss_pred HHHHHHHH---hCCCC-CcCCHHHHHHHHHHHHHHH
Confidence 33211110 00111 1124567788888776544
No 87
>PTZ00325 malate dehydrogenase; Provisional
Probab=57.13 E-value=35 Score=28.66 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=34.9
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHH---HHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKH---NLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|..... .....+.+.. .++.+++.+++.+|+..|++++.|
T Consensus 74 l~gaDvVVitaG~~~~~--------~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 74 LRGADLVLICAGVPRKP--------GMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred hCCCCEEEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46789999999975431 1122344444 788899999999998755555554
No 88
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.58 E-value=35 Score=25.65 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=31.2
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
+|.++|++--.. ......|.+.++. +.+... ..|.-.....+.+-..+. ..+||+|++.+|
T Consensus 50 ~ifllG~~~~~~----~~~~~~l~~~yP~-l~ivg~-~~g~f~~~~~~~i~~~I~-----------~~~pdiv~vglG 110 (172)
T PF03808_consen 50 RIFLLGGSEEVL----EKAAANLRRRYPG-LRIVGY-HHGYFDEEEEEAIINRIN-----------ASGPDIVFVGLG 110 (172)
T ss_pred eEEEEeCCHHHH----HHHHHHHHHHCCC-eEEEEe-cCCCCChhhHHHHHHHHH-----------HcCCCEEEEECC
Confidence 788888775511 1233344444431 333322 333223222333333344 489999999998
No 89
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=56.38 E-value=27 Score=28.94 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=35.2
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHH---HHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYK---HNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|||..|..-. + .....+.+. .-++++++.+++..|++.+++++.|
T Consensus 62 ~~daDivVitag~~rk--~------g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 115 (299)
T TIGR01771 62 CKDADLVVITAGAPQK--P------GETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNP 115 (299)
T ss_pred HCCCCEEEECCCCCCC--C------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4778999999886322 1 122334443 4577778888888999998888866
No 90
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=56.33 E-value=32 Score=28.77 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=35.4
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
....|+|||..|..-- ......+.+ .+-++.+++.+++..|++.+++++.|-
T Consensus 66 ~~daDivvitaG~~~k--------~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 66 LKGADVVVIPAGVPRK--------PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred cCCCCEEEEeCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4788999999996311 112234444 345677777888889999888887763
No 91
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=56.23 E-value=31 Score=28.81 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=35.6
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHH---HHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYK---HNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|||..|..... .....+.+. .-++++++.+++.+|++.+++++.|
T Consensus 71 ~~~adivIitag~~~k~--------g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP 124 (315)
T PRK00066 71 CKDADLVVITAGAPQKP--------GETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNP 124 (315)
T ss_pred hCCCCEEEEecCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 47789999999875441 122333343 3467778888888999988888865
No 92
>PRK06298 type III secretion system protein; Validated
Probab=56.05 E-value=29 Score=29.61 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccc
Q 026021 116 RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGL 195 (244)
Q Consensus 116 ~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~Dgi 195 (244)
.-|++.|+++.|..+.-+-.. ..+...-+.-+.+-.+.....++++|++++|+++.--..-..-.. ..-..+-|
T Consensus 253 ~V~~AdVVItNPTH~AVALkY----d~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~VPiven~pLARaLy~--~~evg~~I 326 (356)
T PRK06298 253 QVKHASAVVSNPKDIAVAIGY----MPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLLD--EGKELKFI 326 (356)
T ss_pred cCCCCcEEEECCCceEEEeEe----CCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHHHHHHH--cCCCCCcC
Confidence 358999999999765322211 111112233444556688899999999999999985433221111 01111222
Q ss_pred cCChhHHHHHHHHHHHHHh
Q 026021 196 HLNETGNRVVFEEVVMKLK 214 (244)
Q Consensus 196 Hpn~~G~~~~a~~l~~~l~ 214 (244)
-++=|+.+|+.|.-..+
T Consensus 327 --P~ely~AVA~IL~~v~~ 343 (356)
T PRK06298 327 --PESTYEAIGEILLYITS 343 (356)
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 45678888887765543
No 93
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=55.39 E-value=32 Score=28.58 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=33.6
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|||..|+..-. ...+.+.+ .+.++.+++.+.+..|++.+++++.|
T Consensus 67 ~~~aDiVIitag~p~~~--------~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP 120 (305)
T TIGR01763 67 TANSDIVVITAGLPRKP--------GMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP 120 (305)
T ss_pred hCCCCEEEEcCCCCCCc--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46789999999975431 11123333 45566677777778888877777766
No 94
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=55.06 E-value=19 Score=32.83 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=53.2
Q ss_pred hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccc
Q 026021 116 RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGL 195 (244)
Q Consensus 116 ~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~Dgi 195 (244)
.-|++.|+++.|..+.-+-.. ..+....+.-+.+-.+.....++++|++++||++.--..-..-.. ..-.| =
T Consensus 551 ~VpkADVVITNPTHyAVALKY----dp~~~~APiVVAKG~D~lAlrIReiAeE~gVPIVENpPLARALY~---~veVG-q 622 (646)
T PRK12773 551 KVPEADVVITNPTHFAVALEY----KPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYE---EVELG-A 622 (646)
T ss_pred cCCCCcEEEECCCceEEEEEE----CCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCcEEECHHHHHHHHH---cCCCC-C
Confidence 458999999998765332211 111122333455566788899999999999999985433222111 01111 1
Q ss_pred cCChhHHHHHHHHHHHH
Q 026021 196 HLNETGNRVVFEEVVMK 212 (244)
Q Consensus 196 Hpn~~G~~~~a~~l~~~ 212 (244)
---++=|+.+|+.|.-.
T Consensus 623 ~IP~eLYeAVAeILa~V 639 (646)
T PRK12773 623 EVPQQFYRAIATILSRL 639 (646)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 23566788888877654
No 95
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=55.04 E-value=36 Score=29.00 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=54.5
Q ss_pred HhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccc
Q 026021 114 KNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSD 193 (244)
Q Consensus 114 ~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~D 193 (244)
.+.-|++.+++..|..+.-+-.. .++...-+.-+.+-.+...-.++++|+++|++++.--..=..-.. ....
T Consensus 257 ~~~Vp~AdvVItNPTH~AVAlkY----~~~~~~AP~VvAKG~d~~AlkIreiA~e~~Ipi~enppLARaLY~---~~~v- 328 (363)
T COG1377 257 MSDVPKADVVITNPTHYAVALKY----DPEKMPAPVVVAKGVDLVALKIREIAKEHGIPIIENPPLARALYR---QVEV- 328 (363)
T ss_pred HhhCCCCCEEeeCcCceeeeeee----ccccCCCCEEEEeCCcHHHHHHHHHHHHcCCceecChHHHHHHHH---hcCc-
Confidence 33469999999999866433221 122112223344455677789999999999999875333222111 0111
Q ss_pred cccCChhHHHHHHHHHHHHHh
Q 026021 194 GLHLNETGNRVVFEEVVMKLK 214 (244)
Q Consensus 194 giHpn~~G~~~~a~~l~~~l~ 214 (244)
|=+--+.-|+.+|+.+.-.-+
T Consensus 329 ~~~IP~e~y~aVaevL~~V~~ 349 (363)
T COG1377 329 GQQIPEELYKAVAEVLAYVYQ 349 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 223456778888887765443
No 96
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=54.60 E-value=73 Score=23.37 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=54.5
Q ss_pred eEEEEcCCCCChhhhhc-CCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhh--hc--ccccccccc
Q 026021 121 LVLLITPPPIDEEARLK-HPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLA--DW--KTAYLSDGL 195 (244)
Q Consensus 121 ~vil~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~--~~--~~~~~~Dgi 195 (244)
+|+++..|..+--..+. -.+|. ..++.+.+.+++.|++.++.+ ++++.-.+.. ++ ...-..||+
T Consensus 3 ~ilvlNGPNLN~LG~Rep~iYG~----------~tl~~i~~~~~~~a~~~g~~v-~~~QSN~EGelId~I~~a~~~~dgi 71 (146)
T PRK05395 3 KILVLNGPNLNLLGTREPEIYGS----------TTLADIEALLEEEAAELGVEL-EFFQSNHEGELIDRIHEARDGADGI 71 (146)
T ss_pred EEEEEeCCCccccCCCCCCcCCC----------CCHHHHHHHHHHHHHHcCCEE-EEEeeCcHHHHHHHHHhcccCCcEE
Confidence 47777777665432222 11221 357788999999999888763 3332211110 11 112247999
Q ss_pred cCChhHHHHHHHHHHHHHhhc
Q 026021 196 HLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 196 Hpn~~G~~~~a~~l~~~l~~~ 216 (244)
=.|+.+|.-.+-+|.++|+..
T Consensus 72 iINpga~THtSiAl~DAl~~~ 92 (146)
T PRK05395 72 IINPGAYTHTSVALRDALAAV 92 (146)
T ss_pred EECchHHHHHHHHHHHHHHcC
Confidence 999999999999999999876
No 97
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=54.52 E-value=30 Score=25.02 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=39.6
Q ss_pred EEEEcccccccccCCCChHHHHHHhhc-cccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 5 IYLFGDSITESSFTYGGWGASLAHHFS-RTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 5 il~iGDSit~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
|+.+||.+. .|...+.=...+.+.+. ..+++...++.......+...+.+... +.|+||..-|+
T Consensus 2 Ii~~GdEl~-~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-------------~~D~VittGG~ 66 (144)
T PF00994_consen 2 IISTGDELL-SGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALD-------------RADLVITTGGT 66 (144)
T ss_dssp EEEECHHHH-TTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHH-------------TTSEEEEESSS
T ss_pred EEEECccCc-CCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhc-------------cCCEEEEcCCc
Confidence 789999999 66543332233333331 126777777777777766666654444 34888888654
No 98
>PRK09108 type III secretion system protein HrcU; Validated
Probab=54.46 E-value=31 Score=29.37 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHh-----hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 103 KHNLHSIVSFLKN-----RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 103 ~~~l~~~v~~~~~-----~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
+...+++-+++.. .-|++.|+++.|..+.-+-.. ..+...-+.-+.+-.+.....++++|++++|+++.--
T Consensus 236 K~rrRq~~re~a~~~m~~~V~~AdvVItNPTH~AVAL~Y----~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPvven~ 311 (353)
T PRK09108 236 KGERKRLARELAFAPPRQRVARANVVVVNPTHYAVALRY----APDEHPLPRVIAKGVDDGALALRRHAHALGIPIVGNP 311 (353)
T ss_pred HHHHHHHHHHHHHhHHhccCCCCcEEEECCCceEEEeEe----CCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCH
Confidence 4455554444433 348999999998765322211 1111222334445566888999999999999999853
Q ss_pred hHhhhhhhcccccccc-cccCChhHHHHHHHHHHHHHhh
Q 026021 178 TKMQQLADWKTAYLSD-GLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 178 ~~~~~~~~~~~~~~~D-giHpn~~G~~~~a~~l~~~l~~ 215 (244)
..-..- |..+ |=---++=|+.+|+.+.-..+.
T Consensus 312 pLARaL------y~~~vg~~IP~ely~aVA~iL~~v~~l 344 (353)
T PRK09108 312 PVARAL------YRVELDEPIPEELFETVAAILRWVDEL 344 (353)
T ss_pred HHHHHH------hcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 332211 1111 2223456788888877655433
No 99
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.16 E-value=1.5e+02 Score=26.64 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=29.6
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
.+||+|.|.. .. . ......++++.+|+..|++.|++-++.+
T Consensus 62 ~~pdvVgis~-----~t-----------~--~~~~a~~~~~~~k~~~P~~~iV~GG~h~ 102 (497)
T TIGR02026 62 HCPDLVLITA-----IT-----------P--AIYIACETLKFARERLPNAIIVLGGIHP 102 (497)
T ss_pred cCcCEEEEec-----Cc-----------c--cHHHHHHHHHHHHHHCCCCEEEEcCCCc
Confidence 7899998863 10 1 1345567888999999999888887754
No 100
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=53.96 E-value=36 Score=23.89 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=30.4
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
.+||+|.+..= ... ......+++.+|+.+|++.|++-++.+.
T Consensus 38 ~~pdiv~~S~~-----------------~~~-~~~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 38 LKPDVVGISLM-----------------TSA-IYEALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred cCCCEEEEeec-----------------ccc-HHHHHHHHHHHHHHCCCCEEEECCcchh
Confidence 68999988731 111 2267888899999999988888887543
No 101
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=53.68 E-value=31 Score=31.85 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHh-----hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 102 YKHNLHSIVSFLKN-----RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 102 ~~~~l~~~v~~~~~-----~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.+.+.+++-+++.. .-|++.++++.|..+.-+-.. +.+...-+.-..+-.+.....++++|++++|+++.-
T Consensus 496 iK~r~R~~~re~~~~~m~~~V~~AdvVitNPTH~AVAL~Y----~~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPive~ 571 (609)
T PRK12772 496 IKAKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKY----EEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIEN 571 (609)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCcEEEECCCceEEEeEe----CCCCCCCCEEEEeeCcHHHHHHHHHHHHCCCcEEeC
Confidence 34455554444433 358999999999765332211 111122333445566788899999999999999985
Q ss_pred hhHhhhhhhcccccccccccCChhHHHHHHHHHHHHH
Q 026021 177 WTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 177 ~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
-..=..-.. ..- .| ---.++=|+.+|+.+.-..
T Consensus 572 ~~LAR~Ly~--~~e-vg-~~IP~ely~aVA~iL~~v~ 604 (609)
T PRK12772 572 KPLARLIYK--KVE-ID-QEIPQDMYQAVAEILAIVY 604 (609)
T ss_pred HHHHHHHHH--cCC-CC-CCCCHHHHHHHHHHHHHHH
Confidence 433222111 001 11 1135667888888776543
No 102
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=53.53 E-value=42 Score=21.82 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechh
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWT 178 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~ 178 (244)
...++.++.+++. +++++++.. +.-..+...+..+|++++++++....
T Consensus 14 ~G~~~v~kai~~g--kaklViiA~-------------------------D~~~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 14 IGTKQTVKALKRG--SVKEVVVAE-------------------------DADPRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred EcHHHHHHHHHcC--CeeEEEEEC-------------------------CCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3456677777764 567777765 11124557788899999999988763
No 103
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.44 E-value=72 Score=24.76 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=54.5
Q ss_pred eEEEEcccccccc-----cCCCChHHHHHHhhccccceEeeccCCc--------chHHHHHHHHhhccccCCCccccccc
Q 026021 4 KIYLFGDSITESS-----FTYGGWGASLAHHFSRTVDVVLRGYSGY--------NTRWAVKVMERVLPAANGESESERER 70 (244)
Q Consensus 4 ~il~iGDSit~~g-----~~~~~~~~~l~~~~~~~~~v~n~g~~G~--------~~~~~~~~l~~~~~~~~~~~~~~~~~ 70 (244)
+|+++|||-+--. +.++.|........+-.....+.-+-|. |+. .++++.+.... =
T Consensus 11 KiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFrtit~sy---------Y 79 (205)
T KOG0084|consen 11 KIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFRTITSSY---------Y 79 (205)
T ss_pred EEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHhhhhHhh---------c
Confidence 6999999988212 1245566666666662233333344453 233 24555554432 1
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhC-CCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRW-PNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~-p~~~vil~~~ 127 (244)
....-|||.+ |+ +-.+--.++.+-++++++.. +++.++|++.
T Consensus 80 R~ahGii~vy---Di------------T~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGN 122 (205)
T KOG0084|consen 80 RGAHGIIFVY---DI------------TKQESFNNVKRWIQEIDRYASENVPKLLVGN 122 (205)
T ss_pred cCCCeEEEEE---Ec------------ccHHHhhhHHHHHHHhhhhccCCCCeEEEee
Confidence 3355666665 44 23444567778888888863 4545666665
No 104
>PLN02629 powdery mildew resistance 5
Probab=53.33 E-value=7.2 Score=33.53 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=35.1
Q ss_pred CCccEEEEEeccC----------CCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCC
Q 026021 71 VSTIAVAVFFGAN----------DACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRW--PNTLVLLITPPPID 131 (244)
Q Consensus 71 ~~pd~vii~~G~N----------D~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~--p~~~vil~~~~~~~ 131 (244)
...|+||+.-|.. |.+...............|+..++..++.+.+.. .++.|++.+..|..
T Consensus 204 ~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~H 276 (387)
T PLN02629 204 RDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTH 276 (387)
T ss_pred ccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCccc
Confidence 4579999997753 1111000000011123578888888888776642 36678888877653
No 105
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.01 E-value=77 Score=22.17 Aligned_cols=40 Identities=8% Similarity=-0.093 Sum_probs=29.2
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCC-CceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWP-NTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p-~~~vil~~~ 127 (244)
.+||+|.|+.- ...+...++++++.+++.++ +..+++.+.
T Consensus 49 ~~~d~V~iS~~-----------------~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 49 EDVDVIGLSSL-----------------SGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred cCCCEEEEccc-----------------chhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 89999999763 23457788999999999865 555555543
No 106
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=52.84 E-value=90 Score=22.91 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCChhhhhc-CCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhh--hhc--cccccccc
Q 026021 120 TLVLLITPPPIDEEARLK-HPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQL--ADW--KTAYLSDG 194 (244)
Q Consensus 120 ~~vil~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~--~~~--~~~~~~Dg 194 (244)
.+|+++.-|..+--..+. -.++. ..++.+++.+++.|++.++.+ ++++.-.+. -++ ......||
T Consensus 2 ~~ilvinGPNLN~LG~REp~iYG~----------~tl~~i~~~~~~~a~~~g~~~-~~~QSN~EGelId~i~~a~~~~dg 70 (146)
T PRK13015 2 GKILVLNGPNLNLLGTREPAIYGH----------ETLADVEALCRAAAEALGLEV-EFRQSNHEGELIDWIHEARGDVAG 70 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCC----------CCHHHHHHHHHHHHHHcCCEE-EEEeeCcHHHHHHHHHHhhhcCCE
Confidence 357888877765432222 11221 257788999999999888754 332221110 011 11233699
Q ss_pred ccCChhHHHHHHHHHHHHHhhc
Q 026021 195 LHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 195 iHpn~~G~~~~a~~l~~~l~~~ 216 (244)
+=.|+.+|.-.+-+|.++|+..
T Consensus 71 iIINpga~THtSiAl~DAl~~~ 92 (146)
T PRK13015 71 IVINPGAYTHTSVAIRDALAAL 92 (146)
T ss_pred EEEcchHHhhhHHHHHHHHHcC
Confidence 9999999999999999999775
No 107
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=52.77 E-value=37 Score=25.75 Aligned_cols=12 Identities=33% Similarity=0.205 Sum_probs=10.7
Q ss_pred cCCccEEEEEec
Q 026021 70 RVSTIAVAVFFG 81 (244)
Q Consensus 70 ~~~pd~vii~~G 81 (244)
...||+|++.+|
T Consensus 98 ~s~~dil~VglG 109 (177)
T TIGR00696 98 RSGAGIVFVGLG 109 (177)
T ss_pred HcCCCEEEEEcC
Confidence 489999999998
No 108
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=52.50 E-value=13 Score=28.72 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHh
Q 026021 101 EYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKM 180 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~ 180 (244)
++...+++++..++++ +++|+|++. -|...+.-++.+.|+++-+.|+-.
T Consensus 88 ~lT~Gi~eLv~~L~~~--~~~v~liSG-----------------------------GF~~~i~~Va~~Lgi~~~n~yAN~ 136 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHAR--GTQVYLISG-----------------------------GFRQLIEPVAEQLGIPKSNIYANE 136 (227)
T ss_pred ccCCCHHHHHHHHHHc--CCeEEEEcC-----------------------------ChHHHHHHHHHHhCCcHhhhhhhe
Confidence 4456789999999997 678999987 233444456677788886665543
Q ss_pred hhhhhcccccccccccCChhHHHH
Q 026021 181 QQLADWKTAYLSDGLHLNETGNRV 204 (244)
Q Consensus 181 ~~~~~~~~~~~~DgiHpn~~G~~~ 204 (244)
.......++...|-.-|+..|..+
T Consensus 137 l~fd~~Gk~~gfd~~~ptsdsggK 160 (227)
T KOG1615|consen 137 LLFDKDGKYLGFDTNEPTSDSGGK 160 (227)
T ss_pred eeeccCCcccccccCCccccCCcc
Confidence 333333345666778888776543
No 109
>PLN02199 shikimate kinase
Probab=52.18 E-value=77 Score=26.40 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhh
Q 026021 106 LHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQL 183 (244)
Q Consensus 106 l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~ 183 (244)
+++..+.++...++..|+|++.+..+.. ...+.+++..+++|+|+...+...
T Consensus 89 Lk~~a~~i~~~l~~~~I~LIG~~GSGKS--------------------------TVgr~LA~~Lg~~fIDtD~lIe~~ 140 (303)
T PLN02199 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKT--------------------------TVGKLMSKVLGYTFFDCDTLIEQA 140 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCHH--------------------------HHHHHHHHHhCCCEEehHHHHHHH
Confidence 7777788888777888999999766544 344455666789999988777653
No 110
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=52.16 E-value=33 Score=29.15 Aligned_cols=102 Identities=20% Similarity=0.082 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHh-----hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 102 YKHNLHSIVSFLKN-----RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 102 ~~~~l~~~v~~~~~-----~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.+...+++-+++.+ .-|++.|+++.|..+.-+-.. ..+...-+.-+.+-.+.....++++|++++|+++.-
T Consensus 232 iK~r~R~~~re~~~~~m~~~V~~AdVVitNPTH~AVAL~Y----d~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~VPiven 307 (342)
T TIGR01404 232 IKSKRRELHQEILSEQLKSDVKRSTLVVANPTHIAIGIYY----KPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRD 307 (342)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCcEEEECCceeEEEeEE----CCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEeeC
Confidence 34455555544433 358999999998755322111 111112233444556688899999999999999985
Q ss_pred hhHhhhhhhcccccccccccCChhHHHHHHHHHHH
Q 026021 177 WTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVM 211 (244)
Q Consensus 177 ~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~ 211 (244)
-..=..-... .-.| ----++=|+.+|+.+.-
T Consensus 308 ~pLAR~Ly~~---~evg-~~IP~ely~aVA~IL~~ 338 (342)
T TIGR01404 308 IPLARQLYRT---ARVG-QYIPEELFEAVAELLRW 338 (342)
T ss_pred HHHHHHHHHc---CCCC-CcCCHHHHHHHHHHHHH
Confidence 4332221110 0111 11245567777776653
No 111
>PLN02602 lactate dehydrogenase
Probab=52.11 E-value=45 Score=28.39 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=35.4
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHH---HHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKH---NLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|||..|..-- ......+.+.. -++++++.+++..|++.+++++.|
T Consensus 103 ~~daDiVVitAG~~~k--------~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNP 156 (350)
T PLN02602 103 TAGSDLCIVTAGARQI--------PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP 156 (350)
T ss_pred hCCCCEEEECCCCCCC--------cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 4788999999986422 11223444444 477888888888999988888865
No 112
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=51.44 E-value=75 Score=23.14 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeeechhHhhhh--hhc--ccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 154 AAGAYAKACIEVAGECGLPVVDLWTKMQQL--ADW--KTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~--~~~--~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
.++.+++.+++.|++.++.+ ++++.-.+. -++ ...-..||+=.|+.||.--+-+|.++|+..
T Consensus 25 tl~di~~~~~~~a~~~g~~v-~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~ 90 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVEL-EFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAV 90 (141)
T ss_pred CHHHHHHHHHHHHHHcCCEE-EEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcC
Confidence 57788999999999888764 333221110 011 111236999999999999999999999776
No 113
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=50.40 E-value=1.4e+02 Score=24.54 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=57.1
Q ss_pred CeEEEEcccccccccCCCChHHHHHHhhccccc----eEeeccCCc--------chHHHHHHHHhhccccCCCccccccc
Q 026021 3 PKIYLFGDSITESSFTYGGWGASLAHHFSRTVD----VVLRGYSGY--------NTRWAVKVMERVLPAANGESESERER 70 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~----v~n~g~~G~--------~~~~~~~~l~~~~~~~~~~~~~~~~~ 70 (244)
++|+++.|... .|+....-....-+.++-.+. |.-..+.|+ ...++...++.+..... .
T Consensus 1 k~vlaIqShVv-~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~--------~ 71 (281)
T COG2240 1 KRILAIQSHVV-YGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDK--------L 71 (281)
T ss_pred CcEEEEeeeEe-ecccccHhHHHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhccc--------c
Confidence 48999999999 777544433334444442322 222333332 23344455554444111 3
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPID 131 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~ 131 (244)
...|.|+-- .....+-.+.+..+|+.+|+.+|+ ++++.=|-++
T Consensus 72 ~~~davltG----------------Ylgs~~qv~~i~~~v~~vk~~~P~--~~~l~DPVMG 114 (281)
T COG2240 72 GECDAVLTG----------------YLGSAEQVRAIAGIVKAVKEANPN--ALYLCDPVMG 114 (281)
T ss_pred cccCEEEEc----------------cCCCHHHHHHHHHHHHHHhccCCC--eEEEeCCccc
Confidence 556665432 234455678899999999999887 4444444443
No 114
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=50.22 E-value=45 Score=21.76 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechh
Q 026021 105 NLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWT 178 (244)
Q Consensus 105 ~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~ 178 (244)
..++.++.+++. +++++++.. +.-......+...|+.++|+++..+.
T Consensus 12 G~~~vlkaIk~g--kakLViiA~-------------------------Da~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 12 GAKQTLKAITNC--NVLQVYIAK-------------------------DAEEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred chHHHHHHHHcC--CeeEEEEeC-------------------------CCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 345666777664 567777766 11225557788899999999976553
No 115
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=49.74 E-value=47 Score=25.30 Aligned_cols=42 Identities=5% Similarity=0.150 Sum_probs=27.7
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.+++.+...|.. . .++++..++.+++..++++++|++.
T Consensus 77 ~~ad~illVfD~t~~~--------------S-f~~~~~w~~~i~~~~~~~piilVGN 118 (189)
T cd04121 77 RGAQGIILVYDITNRW--------------S-FDGIDRWIKEIDEHAPGVPKILVGN 118 (189)
T ss_pred cCCCEEEEEEECcCHH--------------H-HHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5778898888655542 2 2334556666666567888888875
No 116
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=49.66 E-value=41 Score=28.62 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHH-----hhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 103 KHNLHSIVSFLK-----NRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 103 ~~~l~~~v~~~~-----~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
+...+++-+++. +.-|++.|+++.|..+.-+-.. ..+....+.-+.+-.......++++|++++|+++.--
T Consensus 234 K~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~Y----~~~~~~aP~vvakG~~~~A~~I~~~A~~~~vPi~~~~ 309 (347)
T TIGR00328 234 KGRIRQMQREAARRRMMQEVPKADVVITNPTHYAVALKY----DPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENP 309 (347)
T ss_pred HHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeEe----CCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCH
Confidence 344444444443 3358999999998765332111 1111122333445566788999999999999998854
Q ss_pred hHhhhhhhcccccccccccCChhHHHHHHHHHHHH
Q 026021 178 TKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMK 212 (244)
Q Consensus 178 ~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~ 212 (244)
..-..-.. .. ..| ---.++-|+.+|+.+.-.
T Consensus 310 ~LAr~Ly~--~~-~~g-~~IP~~ly~aVA~il~~v 340 (347)
T TIGR00328 310 PLARALYR--QV-EIG-QEIPPELYKAVAEVLAYV 340 (347)
T ss_pred HHHHHHHH--cC-CCC-CcCCHHHHHHHHHHHHHH
Confidence 33222111 00 111 123566788888876543
No 117
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=49.18 E-value=45 Score=27.66 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=34.9
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHH---HHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYK---HNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|..... .....+.+. .-++++.+.+++..|++.+++++.|
T Consensus 66 l~~aDIVIitag~~~~~--------g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP 119 (306)
T cd05291 66 CKDADIVVITAGAPQKP--------GETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNP 119 (306)
T ss_pred hCCCCEEEEccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCh
Confidence 46889999999864331 122334443 4567788888888999988888755
No 118
>PTZ00344 pyridoxal kinase; Provisional
Probab=48.96 E-value=1.5e+02 Score=24.37 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=13.2
Q ss_pred CCCeEEEEcccccccccC
Q 026021 1 MRPKIYLFGDSITESSFT 18 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~ 18 (244)
|.|+|+.+.|+.. .|..
T Consensus 3 ~~~~vl~i~~~~~-~G~~ 19 (296)
T PTZ00344 3 MEKKVLSIQSHVT-HGYV 19 (296)
T ss_pred CCCeEEEEcceee-cccc
Confidence 4469999999999 5543
No 119
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.76 E-value=43 Score=28.01 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=35.4
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHH---HHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYK---HNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|||..|..-. + .....+.+. .-++++++.+++..|++.+++++.|
T Consensus 69 ~~~adivvitaG~~~k--~------g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 122 (312)
T cd05293 69 TANSKVVIVTAGARQN--E------GESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP 122 (312)
T ss_pred hCCCCEEEECCCCCCC--C------CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence 4688999999987543 1 122333333 4577788888888999988888865
No 120
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=48.68 E-value=1.4e+02 Score=23.99 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=42.7
Q ss_pred ceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHH
Q 026021 35 DVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLK 114 (244)
Q Consensus 35 ~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~ 114 (244)
.++..|++|.+.- ..+.+.++ +.=+|.+|-|--... +.-+.++....+.++++.+.
T Consensus 2 gvfDSGiGGltv~---~~l~~~~p---------------~~~~iy~~D~~~~PY------G~ks~~~i~~~~~~~~~~L~ 57 (251)
T TIGR00067 2 GVFDSGVGGLSVL---KEIRKQLP---------------KEHYIYVGDTKRFPY------GEKSPEFILEYVLELLTFLK 57 (251)
T ss_pred EEEeCCccHHHHH---HHHHHHCC---------------CCCEEEEecCCCCCC------CCCCHHHHHHHHHHHHHHHH
Confidence 3677888886653 23333333 223467775554422 34578899999999999999
Q ss_pred -hhCCCceEEEEcC
Q 026021 115 -NRWPNTLVLLITP 127 (244)
Q Consensus 115 -~~~p~~~vil~~~ 127 (244)
+.+ ++.+++..
T Consensus 58 ~~~g--~d~ivIaC 69 (251)
T TIGR00067 58 ERHN--IKLLVVAC 69 (251)
T ss_pred HhCC--CCEEEEeC
Confidence 764 55676665
No 121
>PRK00015 rnhB ribonuclease HII; Validated
Probab=47.74 E-value=1e+02 Score=23.86 Aligned_cols=42 Identities=7% Similarity=-0.105 Sum_probs=24.8
Q ss_pred CCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHH
Q 026021 171 LPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMK 212 (244)
Q Consensus 171 v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~ 212 (244)
..++|.+..-............|..||.-+..-++|+..-+.
T Consensus 111 ~i~vD~~~~~~~~~~~~~~~kaD~~~~~VaAASIvAKv~RD~ 152 (197)
T PRK00015 111 YVLVDGNRVPKLPIPQEAIVKGDAKSPSIAAASILAKVTRDR 152 (197)
T ss_pred EEEECCCCCCCCCCCeEEEEcCCcccHHHHHHHHHHHHHHHH
Confidence 346776543211011122346889999999999999544333
No 122
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=47.29 E-value=1e+02 Score=22.41 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeechhHhhhhh--hc--ccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 153 EAAGAYAKACIEVAGECGLPVVDLWTKMQQLA--DW--KTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~--~~--~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
..++.+.+.+++.|++.++.+ ++++.-.+.. ++ ...-..||+=.|+.+|.--+-+|.++|+..
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~v-~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~ 90 (140)
T cd00466 24 TTLADIEALLRELAAELGVEV-EFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAV 90 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCEE-EEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcC
Confidence 357788999999999888753 3332211110 11 112247999999999999999999999776
No 123
>PRK04940 hypothetical protein; Provisional
Probab=47.17 E-value=69 Score=24.44 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=25.5
Q ss_pred CeEEEEcccccccccCCCChHHHHHHhhccccceEeeccC
Q 026021 3 PKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYS 42 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~ 42 (244)
+.+++||.|+- +=|+..|+++++-+.-++|=++.
T Consensus 60 ~~~~liGSSLG------GyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLG------GYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChH------HHHHHHHHHHHCCCEEEECCCCC
Confidence 36889999997 33889999999866667775544
No 124
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=47.08 E-value=56 Score=27.47 Aligned_cols=51 Identities=10% Similarity=-0.101 Sum_probs=34.6
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhCC-CceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRWP-NTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~p-~~~vil~~~~ 128 (244)
....|+|||..|...-- .....+.+ ..-++++++.+.+..| ++.+++++.|
T Consensus 77 ~~daDvVVitAG~~~k~--------g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 77 FKDVDAALLVGAFPRKP--------GMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred hCCCCEEEEeCCCCCCC--------CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 47789999999875321 12233333 4457788888888887 8888888744
No 125
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=46.90 E-value=54 Score=26.43 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=34.8
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|.-... +..+..-..+-..-++++++.+++..|++.+++++.|
T Consensus 68 ~~~aDiVv~t~~~~~~~-----g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP 121 (263)
T cd00650 68 FKDADVVIITAGVGRKP-----GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNP 121 (263)
T ss_pred hCCCCEEEECCCCCCCc-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46789999988754331 0111112233345678888888888999988888754
No 126
>PRK15029 arginine decarboxylase; Provisional
Probab=46.81 E-value=1.5e+02 Score=28.29 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=29.2
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
..+|+|++-+..=|. +- .+.+.++++.+|+.+++++|++++...
T Consensus 52 ~~~DlVLLD~~LPd~--------------dG-~~~~~ell~~IR~~~~~iPIIlLTar~ 95 (755)
T PRK15029 52 EAIDCLMFSYQMEHP--------------DE-HQNVRQLIGKLHERQQNVPVFLLGDRE 95 (755)
T ss_pred CCCcEEEEECCCCCC--------------cc-chhHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 589999985432111 11 123467888888877788899998654
No 127
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=46.81 E-value=9.2 Score=30.48 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=45.6
Q ss_pred CcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCC-CC--CCCCCccchHHHHHHHHHHHHHHHhcC
Q 026021 94 FQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYV-EN--PTGLPERTNEAAGAYAKACIEVAGECG 170 (244)
Q Consensus 94 ~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~ 170 (244)
+..++.+++.+...++.+.+|+..|.+ .+++|...+.........+ .. ....-... ..+.=|-+.|++.-++.|
T Consensus 147 P~~~t~~El~~r~i~~AkaiK~~DP~a--~v~GP~~wgw~~y~~~~~d~~~~~d~~~~g~~-~fl~wyL~qm~~~~~~~G 223 (239)
T PF12891_consen 147 PEPVTYDELRDRSIEYAKAIKAADPDA--KVFGPVEWGWCGYFSSADDAPGWPDRAAHGNY-DFLPWYLDQMKEAEKSTG 223 (239)
T ss_dssp -S---HHHHHHHHHHHHHHHHHH-TTS--EEEEEEE-SHHHHHHTTTHHTTHHHHHHTTT--SHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCCC--eEeechhhccceeeccCccccccccccccCCc-chHHHHHHHHHHhhhhcC
Confidence 456788999999999999999998885 4555555554444333221 00 00000011 256677788888888889
Q ss_pred CCeeechh
Q 026021 171 LPVVDLWT 178 (244)
Q Consensus 171 v~~iD~~~ 178 (244)
+.++|...
T Consensus 224 ~RLLDvlD 231 (239)
T PF12891_consen 224 KRLLDVLD 231 (239)
T ss_dssp S-S-SEEE
T ss_pred ceeeeeee
Confidence 88888653
No 128
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.94 E-value=1.4e+02 Score=23.26 Aligned_cols=54 Identities=7% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhh-CC-CceEEEEcC
Q 026021 50 VKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNR-WP-NTLVLLITP 127 (244)
Q Consensus 50 ~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~-~p-~~~vil~~~ 127 (244)
.++++.+++.. -...+++||-+-.+|... -++..+.|+.++.. ++ ++.|+|++.
T Consensus 81 QERFrslipsY---------~Rds~vaviVyDit~~~S---------------fe~t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 81 QERFRSLIPSY---------IRDSSVAVIVYDITDRNS---------------FENTSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred HHHHhhhhhhh---------ccCCeEEEEEEeccccch---------------HHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 46788887765 256677777775555432 34455555555554 44 355666654
No 129
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=45.82 E-value=83 Score=25.50 Aligned_cols=68 Identities=22% Similarity=0.161 Sum_probs=43.9
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhh-ccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEE
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHF-SRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVF 79 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~-~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~ 79 (244)
|+--|+.+||-+- .|-.-+.=...|++.| ...+++.-...-|..-..+...+..... ++|+||+.
T Consensus 2 ~~a~iI~vG~ElL-~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~-------------r~D~vI~t 67 (255)
T COG1058 2 MKAEIIAVGDELL-SGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASE-------------RADVVITT 67 (255)
T ss_pred ceEEEEEEcccee-cCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHh-------------CCCEEEEC
Confidence 3446899999999 6544222223333333 2237888888888887766666665544 39999998
Q ss_pred ecc
Q 026021 80 FGA 82 (244)
Q Consensus 80 ~G~ 82 (244)
-|.
T Consensus 68 GGL 70 (255)
T COG1058 68 GGL 70 (255)
T ss_pred CCc
Confidence 663
No 130
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=45.79 E-value=60 Score=26.06 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=10.8
Q ss_pred cCCccEEEEEec
Q 026021 70 RVSTIAVAVFFG 81 (244)
Q Consensus 70 ~~~pd~vii~~G 81 (244)
..+||+|++.+|
T Consensus 155 ~s~~dil~VglG 166 (243)
T PRK03692 155 ASGAKIVTVAMG 166 (243)
T ss_pred hcCCCEEEEECC
Confidence 489999999998
No 131
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=45.31 E-value=1.1e+02 Score=21.85 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=35.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCc
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNT 120 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~ 120 (244)
..+-+.|..+++++|.-. ....++|+..+++.|....++.|..
T Consensus 81 G~~S~~V~~f~~~~hFP~--------~~~v~~Yk~~L~~~I~~~v~~C~rs 123 (127)
T PF06309_consen 81 GMKSPFVHQFIATHHFPH--------NSNVDEYKEQLKSWIRGNVSRCPRS 123 (127)
T ss_pred ccCCCceeeecccccCCC--------chHHHHHHHHHHHHHHHHHHhCCcC
Confidence 478899999999999942 2368899999999999888887764
No 132
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=45.19 E-value=50 Score=24.61 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=27.5
Q ss_pred EEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 75 AVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 75 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
.|+|.+|+|-- .-..++++.++.+.+. ++.+++.++..
T Consensus 3 ~v~i~lGSN~g---------------~~~~~l~~A~~~L~~~-~~~~i~~~S~~ 40 (159)
T PRK10239 3 VAYIAIGSNLA---------------SPLEQVNAALKALGDI-PESRILAVSSF 40 (159)
T ss_pred EEEEEEeCchh---------------hHHHHHHHHHHHHhcC-CCCeEEEECCC
Confidence 58899999942 1167788888888776 67777776654
No 133
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=45.13 E-value=57 Score=27.93 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=51.4
Q ss_pred hCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccc
Q 026021 116 RWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGL 195 (244)
Q Consensus 116 ~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~Dgi 195 (244)
.-|++.|+++.|..+.-+-.. ..+....+.-+.+-.......++++|++++|+++.--..-..-.. . ...+ -
T Consensus 259 ~V~~AdVVItNPTH~AVal~Y----~~~~~~aP~vvakg~~~~A~~i~~~A~~~~vpi~~~~~LAr~Ly~--~-~~~g-~ 330 (359)
T PRK05702 259 AVPKADVVITNPTHYAVALKY----DRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALYA--T-VEIG-Q 330 (359)
T ss_pred cCCCCcEEEECCCceEEEeEe----CCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHHHHHHH--c-CCCC-C
Confidence 358999999998765332211 111112233444556678899999999999999985433222111 0 0111 1
Q ss_pred cCChhHHHHHHHHHHHH
Q 026021 196 HLNETGNRVVFEEVVMK 212 (244)
Q Consensus 196 Hpn~~G~~~~a~~l~~~ 212 (244)
--.++-|+.+|+.+.-.
T Consensus 331 ~Ip~~~~~aVA~il~~v 347 (359)
T PRK05702 331 EIPEELYKAVAEVLAYV 347 (359)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 23566778888766443
No 134
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.05 E-value=65 Score=27.08 Aligned_cols=51 Identities=8% Similarity=-0.111 Sum_probs=34.9
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhC-CCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRW-PNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~-p~~~vil~~~~ 128 (244)
....|+|||..|....- .....+.+ .+-++++...+.+.. |++.+++++.|
T Consensus 76 ~~daDivvitaG~~~k~--------g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 76 FKDADWALLVGAKPRGP--------GMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred hCCCCEEEEeCCCCCCC--------CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 57899999999875331 12233333 345778888888888 48888888744
No 135
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=44.85 E-value=79 Score=26.35 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=34.6
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCccc--ChhHH---HHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHV--PLHEY---KHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~--~~~~~---~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|||..|..-- + ... ..+.+ .+-+++++..+.+.+|++.+++++.|
T Consensus 66 ~~~aDivvitaG~~~k--p------g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 66 CADADIIVITAGPSID--P------GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred hCCCCEEEECCCCCCC--C------CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 5788999999886322 1 111 14444 34677888888888999877777766
No 136
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=44.44 E-value=88 Score=29.22 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=37.0
Q ss_pred eEEEEcccccccccCCCChHHHHHHhh-ccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEecc
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHF-SRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGA 82 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~-~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 82 (244)
++++-||.-. . +.. .+.+.. .-++++...++=|..+......++ ..+|+++||+.|.
T Consensus 576 ~~L~tGD~~~-~-----~E~-~l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~---------------~v~P~~aiiS~g~ 633 (662)
T TIGR00361 576 SWLLTGDLEA-E-----GEQ-EVMRVFPNIKADVLQVGHHGSKTSTSEELIQ---------------QVQPKVAIISAGR 633 (662)
T ss_pred eEEEecCCCH-H-----HHH-HHHhcccCcCccEEEeCCCCCCCCChHHHHH---------------hcCCCEEEEECCC
Confidence 5777777755 1 111 222222 223678888888865554333333 4889999999998
Q ss_pred CCC
Q 026021 83 NDA 85 (244)
Q Consensus 83 ND~ 85 (244)
++.
T Consensus 634 ~N~ 636 (662)
T TIGR00361 634 NNR 636 (662)
T ss_pred CCC
Confidence 654
No 137
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=44.39 E-value=66 Score=26.55 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=33.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+.+|...... ........+-...++++++.+.+..|+..+++++.|
T Consensus 64 l~dADiVIit~g~p~~~~-----~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 64 IAGSDVVVITAGIPRKPG-----MSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred hCCCCEEEEecCCCCCcC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 467899999998643310 011111122345666778888888888877777755
No 138
>cd06266 RNaseH_typeII Ribonuclease H type II. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, however, no prokaryotic genome contained the combination of only RNase HI and HIII. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escheri
Probab=44.28 E-value=1.1e+02 Score=23.46 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=59.8
Q ss_pred EEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHH
Q 026021 78 VFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGA 157 (244)
Q Consensus 78 i~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (244)
..+|.+|...- + .+..+.+.+.+++..-...+.++++..++..... ......
T Consensus 31 ~~~gv~DSK~L---------t----~~~r~~l~~~I~~~~~~~~v~~~~p~~id~~nl~---------------~~~~~~ 82 (193)
T cd06266 31 KILGVKDSKKL---------S----EKKREELFEEIKEEALAYAIGIISPEEIDELNIL---------------QATALA 82 (193)
T ss_pred cccCCCCcccC---------C----HHHHHHHHHHHHhhCCeEEEEEECHHHHCHHHHH---------------HHHHHH
Confidence 45677787432 2 3344455555554222455666676555433111 122334
Q ss_pred HHHHHHHHHHhcCCCeeechhHhhhh---------hhcccccccccccCChhHHHHHHHHHHHHHhhc
Q 026021 158 YAKACIEVAGECGLPVVDLWTKMQQL---------ADWKTAYLSDGLHLNETGNRVVFEEVVMKLKTE 216 (244)
Q Consensus 158 ~~~~~~~~a~~~~v~~iD~~~~~~~~---------~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~ 216 (244)
+.+.+.++.......+||.+...... ......-..|..||.-+..-++|+.......+.
T Consensus 83 ~~~~i~~l~~~~~~i~iD~~~~~~~~~~~~~~~~~~~~~~~~kaD~~~~~VaAASIiAKv~rd~~m~~ 150 (193)
T cd06266 83 MARAILNLGVKPDEVLVDGNGVPEKYFALEKKFLPIPVTAIVKGDSKSPSVAAASILAKVTRDRLMEE 150 (193)
T ss_pred HHHHHHhcCCCCCEEEECCCCChhhhhhhcccCCCCCeEEEeccccccHhHHHHHHHHHHHHHHHHHH
Confidence 44455444322334578876543211 111223457889999999999999876665544
No 139
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=44.22 E-value=74 Score=26.49 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=33.0
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhH---HHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHE---YKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~---~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|.-... .....+. -...++.+++.+.+..|++.+++++.|
T Consensus 70 l~~aDiViitag~p~~~--------~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 70 VAGSDIVIITAGVPRKE--------GMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred hCCCCEEEEecCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 57889999999874321 0111222 235667777777777888888888754
No 140
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=44.12 E-value=1.8e+02 Score=23.84 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQ 182 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~ 182 (244)
.+.+.++++.+++..+ +++.|. .-..+.+.+++.|..++++++|+...+..
T Consensus 45 ~~~~~~i~~~~~~~~~---iV~~Tl--------------------------v~~elr~~l~~~~~~~~i~~vdll~p~i~ 95 (269)
T PRK05339 45 EEKADEVLEEINAERP---IVFYTL--------------------------VDPELREILEERCAEFGIPCIDILGPLIA 95 (269)
T ss_pred HHHHHHHHHHHHhcCC---EEEEeC--------------------------CCHHHHHHHHHHHHHcCCCEEeccHHHHH
Confidence 5677778888876432 777776 22366788889999999999999988765
Q ss_pred h
Q 026021 183 L 183 (244)
Q Consensus 183 ~ 183 (244)
.
T Consensus 96 ~ 96 (269)
T PRK05339 96 P 96 (269)
T ss_pred H
Confidence 4
No 141
>PLN00106 malate dehydrogenase
Probab=44.07 E-value=69 Score=26.95 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=34.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
....|+||+..|..... .....+.+ ..-++.+++.+++.+|++.+++++.|-
T Consensus 84 l~~aDiVVitAG~~~~~--------g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 84 LKGADLVIIPAGVPRKP--------GMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred cCCCCEEEEeCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 47789999999864331 11122233 345777888888889998777776664
No 142
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=43.75 E-value=89 Score=21.57 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCCh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDE 132 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~ 132 (244)
...+.+.++.++++ ++++++++..+...
T Consensus 66 ~~~~~~~~~~ak~~--g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 66 TRELIELLRFAKER--GAPVILITSNSESP 93 (131)
T ss_dssp THHHHHHHHHHHHT--TSEEEEEESSTTSH
T ss_pred chhhhhhhHHHHhc--CCeEEEEeCCCCCc
Confidence 45667777788886 57788888755543
No 143
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=43.75 E-value=1.1e+02 Score=23.03 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCe-eechhHhhhhhhcccccccccccCChhH
Q 026021 153 EAAGAYAKACIEVAGECGLPV-VDLWTKMQQLADWKTAYLSDGLHLNETG 201 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~-iD~~~~~~~~~~~~~~~~~DgiHpn~~G 201 (244)
....+.-+.+.++|+++++++ ++-+..+. ..+..||+|.+...
T Consensus 39 ~~~~~~a~~l~~~~~~~~~~liin~~~~la------~~~~~dGvHl~~~~ 82 (180)
T PF02581_consen 39 EELLELARRLAELCQKYGVPLIINDRVDLA------LELGADGVHLGQSD 82 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTGCEEEES-HHHH------HHCT-SEEEEBTTS
T ss_pred cHHHHHHHHHHHHhhcceEEEEecCCHHHH------HhcCCCEEEecccc
Confidence 355577788888999887764 44433222 23568999987754
No 144
>PRK09483 response regulator; Provisional
Probab=43.51 E-value=1.4e+02 Score=22.47 Aligned_cols=41 Identities=7% Similarity=-0.048 Sum_probs=26.1
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..||+|++-+..-|.. . ..+++.+++..|.+++++++...-
T Consensus 46 ~~~dlvi~d~~~~~~~------------g-------~~~~~~l~~~~~~~~ii~ls~~~~ 86 (217)
T PRK09483 46 NAVDVVLMDMNMPGIG------------G-------LEATRKILRYTPDVKIIMLTVHTE 86 (217)
T ss_pred cCCCEEEEeCCCCCCC------------H-------HHHHHHHHHHCCCCeEEEEeCCCC
Confidence 6789998865432221 1 235566666678888999886543
No 145
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=43.25 E-value=53 Score=23.72 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccC------ChhHHHHHHH
Q 026021 153 EAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHL------NETGNRVVFE 207 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHp------n~~G~~~~a~ 207 (244)
+....+.+.++++|++.++.++.+ ...+|.||+ ...+...+-.
T Consensus 30 ~~~~~l~~~l~~~~~~~~~eI~a~------------~v~pdHVHlli~~pp~~~~~~~~~~ 78 (136)
T COG1943 30 EVLNLLRSILREVAEQKNFEILAM------------EVMPDHVHLLITLPPKDSVSSIVNR 78 (136)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEE------------EecCCEEEEEEecCCCCCHHHHHHH
Confidence 367789999999999999988876 355666663 4445555443
No 146
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=43.18 E-value=1e+02 Score=23.83 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=34.4
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhcc----ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEE
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSR----TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVF 79 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~----~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~ 79 (244)
-|+.+||++. .|...+.=...+.+.+.. .+.+ ..++-......+...+.+... ....|+||+.
T Consensus 7 aIItvSd~~~-~G~i~D~ng~~L~~~L~~~G~~g~~v-~~~iVpDd~~~I~~aL~~a~~-----------~~~~DlIITT 73 (193)
T PRK09417 7 GLVSISDRAS-SGVYEDKGIPALEEWLASALTSPFEI-ETRLIPDEQDLIEQTLIELVD-----------EMGCDLVLTT 73 (193)
T ss_pred EEEEEcCcCC-CCceeechHHHHHHHHHHcCCCCceE-EEEECCCCHHHHHHHHHHHhh-----------cCCCCEEEEC
Confidence 5889999998 554433222233333321 1122 234545555445555555444 2578998887
Q ss_pred ec
Q 026021 80 FG 81 (244)
Q Consensus 80 ~G 81 (244)
-|
T Consensus 74 GG 75 (193)
T PRK09417 74 GG 75 (193)
T ss_pred CC
Confidence 44
No 147
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=43.06 E-value=1.2e+02 Score=22.11 Aligned_cols=66 Identities=9% Similarity=-0.026 Sum_probs=39.4
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhcc-ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSR-TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
.|+.+||-+. .|...+.-...+.+.+.. .+++.-.+.-......+...+.+... ....|+||..-|
T Consensus 4 ~ii~~~~e~~-~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-----------~~~~DlVittGG 70 (152)
T cd00886 4 AVLTVSDTRS-AGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWAD-----------EDGVDLILTTGG 70 (152)
T ss_pred EEEEEcCccc-CCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHh-----------cCCCCEEEECCC
Confidence 5788999988 665544444444444421 15566666666666555555555443 147898887744
No 148
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=43.04 E-value=1.9 Score=32.66 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCCCCCCCCCCCc
Q 026021 198 NETGNRVVFEEVVMKLKTEGLSLE--NLPVDLPMISEIDPNDPLKA 241 (244)
Q Consensus 198 n~~G~~~~a~~l~~~l~~~~~~~~--~~~~~~p~~~~~~~~~~~~~ 241 (244)
..+.+-.||+++.+.|+.++.... ++.+.+|+|.++++.+|+.|
T Consensus 44 qnK~nVCWAKaL~PVL~TAGI~LT~~qW~~l~p~F~~Dka~S~e~A 89 (202)
T PF01707_consen 44 QNKANVCWAKALVPVLATAGIQLTAEQWSTLFPAFKEDKAYSPEVA 89 (202)
T ss_dssp TT-SS-HHHHHHHHHHHCTT----HHHHCCCHHHHHTT----HHHH
T ss_pred cccccchhHHHHHHHHHhcCcccCHHHHHHHhHHhhcCcccCHHHH
Confidence 567788999999999999976665 68899999999999999765
No 149
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=42.64 E-value=76 Score=21.45 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
...++.++.+++. ++++++++.- .-..+...+...|++++++++..
T Consensus 19 ~G~~~v~kai~~g--kaklViiA~D-------------------------~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 19 LGSKRTIKAIKLG--KAKLVIVASN-------------------------CPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred EcHHHHHHHHHcC--CceEEEEeCC-------------------------CCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455667777664 5778887751 11244577888899999998664
No 150
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=42.38 E-value=1.4e+02 Score=22.04 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhc----cccceEeeccCC
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFS----RTVDVVLRGYSG 43 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~----~~~~v~n~g~~G 43 (244)
||.-|+-+|+.+- + ++|....+.+++. +.+.++..|..|
T Consensus 1 ~~~lVlGiGN~L~-g---DDGvG~~v~~~L~~~~~~~v~vid~gt~~ 43 (156)
T PRK11544 1 MTDVVLTVGNSMM-G---DDGAGPLLAEKLAAAPKGGWVVIDGGSAP 43 (156)
T ss_pred CcEEEEEeCcccc-c---cCcHHHHHHHHHhccCCCCeEEEECCCCH
Confidence 7767888888887 3 4566555555553 234555555433
No 151
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=42.17 E-value=1.1e+02 Score=22.68 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=38.0
Q ss_pred eEEEEcccccccccCCCC-hHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 4 KIYLFGDSITESSFTYGG-WGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~-~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
-|+.+||++. ......+ +...+-+.++ ..+.-.++-......+...+.+... ....|+|++.-|
T Consensus 8 ~vit~~d~~~-~~~d~n~~~l~~~L~~~G--~~v~~~~iv~Dd~~~i~~~l~~~~~-----------~~~~DlVIttGG 72 (163)
T TIGR02667 8 AILTVSDTRT-EEDDTSGQYLVERLTEAG--HRLADRAIVKDDIYQIRAQVSAWIA-----------DPDVQVILITGG 72 (163)
T ss_pred EEEEEeCcCC-ccCCCcHHHHHHHHHHCC--CeEEEEEEcCCCHHHHHHHHHHHHh-----------cCCCCEEEECCC
Confidence 4778999987 3322222 3333333333 5666677777666666666666543 257899888854
No 152
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=42.17 E-value=70 Score=26.17 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|||.|+++|+++-. ..|. ...+....---++..|-|+....- ..+..... .....+|+|..
T Consensus 174 lrP~VV~FGE~lp~-----~~~~-~a~~~~~~aDlllviGTSl~V~pa--~~l~~~a~-----------~~g~~vi~IN~ 234 (271)
T PTZ00409 174 FKPNVILFGEVIPK-----SLLK-QAEKEIDKCDLLLVVGTSSSVSTA--TNLCYRAH-----------RKKKKIVEVNI 234 (271)
T ss_pred ccCcEEEeCCcCCH-----HHHH-HHHHHHHcCCEEEEECCCCcccCH--HHHHHHHH-----------HcCCCEEEECC
Confidence 68999999999872 2232 223333222236667777755432 23444333 25677888888
Q ss_pred ccCCC
Q 026021 81 GANDA 85 (244)
Q Consensus 81 G~ND~ 85 (244)
+....
T Consensus 235 ~~t~~ 239 (271)
T PTZ00409 235 SKTYI 239 (271)
T ss_pred CCCCC
Confidence 76543
No 153
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=41.90 E-value=68 Score=23.07 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCC-CceEEEEcCCCCChhhhhcCCCCCCCCCCCc
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWP-NTLVLLITPPPIDEEARLKHPYVENPTGLPE 149 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p-~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (244)
...|.+||.+..||.. -.+++..+++.++...+ ++++++++.-.-... .+
T Consensus 70 ~~~~~~ii~fd~~~~~---------------S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~------------- 120 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEE---------------SFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-ER------------- 120 (162)
T ss_dssp TTESEEEEEEETTBHH---------------HHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GS-------------
T ss_pred cccccccccccccccc---------------cccccccccccccccccccccceeeeccccccc-cc-------------
Confidence 6788999998665542 23445577777776655 577877765211101 00
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 150 RTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 150 ~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
.. -.+..+++|++++++|+.+-
T Consensus 121 ~v------~~~~~~~~~~~~~~~~~e~S 142 (162)
T PF00071_consen 121 EV------SVEEAQEFAKELGVPYFEVS 142 (162)
T ss_dssp SS------CHHHHHHHHHHTTSEEEEEB
T ss_pred cc------hhhHHHHHHHHhCCEEEEEE
Confidence 00 01456778888888888864
No 154
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.79 E-value=41 Score=26.37 Aligned_cols=10 Identities=60% Similarity=0.793 Sum_probs=9.0
Q ss_pred eEEEEccccc
Q 026021 4 KIYLFGDSIT 13 (244)
Q Consensus 4 ~il~iGDSit 13 (244)
+|++||||-.
T Consensus 16 KiVliGDS~V 25 (222)
T KOG0087|consen 16 KIVLIGDSAV 25 (222)
T ss_pred EEEEeCCCcc
Confidence 6899999987
No 155
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=41.61 E-value=88 Score=23.51 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=36.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhc-cccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFS-RTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
.|+.+||.+. .|...+.-...|++.+. ..+++....+.+.....+...+.+.. ...|+||+.-|
T Consensus 3 ~Ii~~GdEl~-~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~-------------~~~dlVIttGG 67 (170)
T cd00885 3 EIIAIGDELL-SGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS-------------ERADLVITTGG 67 (170)
T ss_pred EEEEECcccc-CCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-------------hCCCEEEECCC
Confidence 5889999998 55543332333333331 12566666666666655555554433 35788887744
No 156
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.51 E-value=74 Score=26.73 Aligned_cols=51 Identities=10% Similarity=-0.066 Sum_probs=34.6
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhC-CCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRW-PNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~-p~~~vil~~~~ 128 (244)
....|+||+..|..+-- .....+.+ .+-+++++..+++.. |++.+++++.|
T Consensus 74 ~~~aDiVVitAG~~~~~--------g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 74 FKDVDVAILVGAFPRKP--------GMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred hCCCCEEEEeCCCCCCc--------CCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 47789999999864331 12233333 345788888888884 99988888744
No 157
>PRK06223 malate dehydrogenase; Reviewed
Probab=41.22 E-value=68 Score=26.51 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=31.9
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+.+|.-.-. +........+=...++++++.+.+..|++.+++++.|
T Consensus 68 ~~~aDiVii~~~~p~~~-----~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 68 IAGSDVVVITAGVPRKP-----GMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred HCCCCEEEECCCCCCCc-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46789999998853211 0001011123345667777777777888777777655
No 158
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=41.04 E-value=1.5e+02 Score=22.19 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred CCccEEEEEeccCCCCCCCCCCCC----------------cccChhHHHHHHHHHHHHHHhhCCCceEEEEc
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAF----------------QHVPLHEYKHNLHSIVSFLKNRWPNTLVLLIT 126 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~----------------~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~ 126 (244)
..-++|++++|++-.. .+.-+.- .....--...|+++.+++++++.|+..|+.+-
T Consensus 23 ~~~~iv~lCIGTDRst-GDsLGPLVGt~L~~~~~~~~~VyGTL~~PVHA~NL~e~l~~I~~~~~~~~IIAID 93 (163)
T PF06866_consen 23 HNREIVFLCIGTDRST-GDSLGPLVGTKLKEMGFPNFNVYGTLDEPVHALNLEETLNEIKKKHPNPFIIAID 93 (163)
T ss_pred cCCCEEEEEECCCCCc-cccccchhhHHHHhcCCCCceEEECCCCCcchhhHHHHHHHHHHHCCCCeEEEEE
Confidence 3678999999986652 1111100 01112234679999999999998887777763
No 159
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=40.98 E-value=1.4e+02 Score=24.93 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=36.7
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCc
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPE 149 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (244)
..+||.||++-=.+=-... ..++.+.....+.++ +++.+-...|+++|+-++....+
T Consensus 212 Gs~Pd~lVL~H~p~r~~~~----~~p~~~ip~l~~~I~-l~e~la~~~~~~~VvgIslNt~~------------------ 268 (301)
T PF07755_consen 212 GSQPDALVLCHAPGRKHRD----GFPHYPIPPLEEEIE-LIEALAGTKPPAKVVGISLNTSG------------------ 268 (301)
T ss_dssp HH--SEEEEEEETT-SC-T----TSTTSC---HHHHHH-HHHHCCCGC---EEEEEECC-TT------------------
T ss_pred cCCCCeEEEEecCCccccc----CCCcCCCCCHHHHHH-HHHHhhccCCCccEEEEEEECCC------------------
Confidence 3567777777533221111 112233433333333 33333333367788888874332
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCeeechh
Q 026021 150 RTNEAAGAYAKACIEVAGECGLPVVDLWT 178 (244)
Q Consensus 150 ~~~~~~~~~~~~~~~~a~~~~v~~iD~~~ 178 (244)
..-++..+.++++.++.++++.|...
T Consensus 269 ---l~~~e~~~~~~~~~~e~glPv~Dp~r 294 (301)
T PF07755_consen 269 ---LSEEEAKAAIERIEEELGLPVTDPLR 294 (301)
T ss_dssp ---S-HHHHHHHHHHHHHHH-S-EE-HHH
T ss_pred ---CCHHHHHHHHHHHHHHHCCCeeeccc
Confidence 12335667788888899999999753
No 160
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=40.61 E-value=73 Score=23.15 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEc
Q 026021 102 YKHNLHSIVSFLKNRWPNTLVLLIT 126 (244)
Q Consensus 102 ~~~~l~~~v~~~~~~~p~~~vil~~ 126 (244)
...|+++.+++++++.|+..|+.+-
T Consensus 45 HA~NL~e~l~~I~~~~~~~~iIAID 69 (140)
T TIGR02841 45 HAKNLEEKLKIIKKKHPNPFIIAID 69 (140)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEEE
Confidence 5679999999999998887777763
No 161
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=40.57 E-value=1.2e+02 Score=21.04 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 99 LHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 99 ~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.+.+.+.++.-++.+++.+....+.++..- -+.....|....++.|++.|+.+...
T Consensus 9 a~~i~~~l~~~i~~l~~~~~~P~Laii~vg----------------------~d~~S~~Y~~~k~k~~~~~Gi~~~~~ 64 (117)
T PF00763_consen 9 AKEIKEELKEEIEKLKEKGITPKLAIILVG----------------------DDPASISYVRSKQKAAEKLGIEFELI 64 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCT---EEEEEEES------------------------HHHHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEecC----------------------CChhHHHHHHHHHHHHHHcCCceEEE
Confidence 356777888888888887433334433331 11345588999999999999876544
No 162
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=40.52 E-value=59 Score=26.08 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|||.|+++|+++.. ..|.. ..+.....--++..|-+..... ...+..... .....+|+|..
T Consensus 153 lrP~Vv~FgE~~p~-----~~~~~-~~~~~~~aDl~lviGTSl~V~p--a~~l~~~~~-----------~~g~~~i~iN~ 213 (244)
T PRK14138 153 IRPNIVFFGEALPQ-----DALRE-AIRLSSKASLMIVMGSSLVVYP--AAELPLITV-----------RSGGKLVIVNL 213 (244)
T ss_pred ECCCEEECCCcCCH-----HHHHH-HHHHHhcCCEEEEeCcCCeeec--HhHHHHHHH-----------HcCCeEEEEcC
Confidence 58999999999872 12322 2333322224667787775544 223333333 25567888888
Q ss_pred ccCCC
Q 026021 81 GANDA 85 (244)
Q Consensus 81 G~ND~ 85 (244)
+..+.
T Consensus 214 ~~t~~ 218 (244)
T PRK14138 214 GETPL 218 (244)
T ss_pred CCCCC
Confidence 76655
No 163
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=40.29 E-value=78 Score=24.64 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=35.6
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|||.|+++|+++.. ..|... .+....---++..|-+..... ...+.+... .....+++|..
T Consensus 130 lrP~VV~FgE~lp~-----~~~~~a-~~~~~~aDlllviGTSl~V~p--a~~l~~~~~-----------~~g~~vi~iN~ 190 (206)
T cd01410 130 LKDTIVDFGERLPP-----ENWMGA-AAAACRADLFLCLGTSLQVTP--AANLPLKAA-----------RAGGRLVIVNL 190 (206)
T ss_pred cCCcEEECCCCCCH-----HHHHHH-HHHHhcCCEEEEECcCceehh--HHHHHHHHH-----------hcCCeEEEECC
Confidence 68999999999882 123222 233322223666777775543 222333333 24566777776
Q ss_pred ccCC
Q 026021 81 GAND 84 (244)
Q Consensus 81 G~ND 84 (244)
+..+
T Consensus 191 ~~~~ 194 (206)
T cd01410 191 QPTP 194 (206)
T ss_pred CCCC
Confidence 5443
No 164
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=39.78 E-value=84 Score=24.40 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
.+.|++++.+..+ +++.|.+.-.+-+-+++...|+++++|++.
T Consensus 75 ~~tdvfl~cfsv~--------------~p~S~~nv~~kW~pEi~~~cp~vpiiLVGt 117 (198)
T KOG0393|consen 75 PQTDVFLLCFSVV--------------SPESFENVKSKWIPEIKHHCPNVPIILVGT 117 (198)
T ss_pred CCCCEEEEEEEcC--------------ChhhHHHHHhhhhHHHHhhCCCCCEEEEee
Confidence 5668888876533 345666667777889999999999999995
No 165
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=39.62 E-value=1.8e+02 Score=22.71 Aligned_cols=41 Identities=5% Similarity=-0.122 Sum_probs=30.7
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
..+||+|.+++-.. .....++++++.+++..++++|++-+.
T Consensus 137 ~~~~~~V~lS~~~~-----------------~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 137 EHKADIIGLSGLLV-----------------PSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred HcCCCEEEEccchh-----------------ccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 38999998876322 226788999999999888777777665
No 166
>PRK06683 hypothetical protein; Provisional
Probab=39.15 E-value=91 Score=20.29 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 106 LHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 106 l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
.++.++.+++. +++++++.. +.-..+.+.+...|+.++|+++...
T Consensus 16 ~~~v~kaik~g--kaklViiA~-------------------------Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 16 HKRTLEAIKNG--IVKEVVIAE-------------------------DADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHHHcC--CeeEEEEEC-------------------------CCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 45566666664 567777766 1122355777888999999998776
No 167
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=38.85 E-value=93 Score=24.90 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQ 181 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~ 181 (244)
...++..++.++....++.++++-....-... .........+......++++|.+++++++=+.+.-.
T Consensus 114 ~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~-----------~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr 181 (259)
T PF03796_consen 114 IDDIESKIRRLKREGKKVDVVFIDYLQLLKSE-----------DSSDNRRQEIGEISRELKALAKELNIPVIALSQLNR 181 (259)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS-----------CSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSG
T ss_pred HHHHHHHHHHHHhhccCCCEEEechHHHhcCC-----------CCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccCh
Confidence 34445555656665456778877432111000 011133466778899999999999999988765543
No 168
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=38.82 E-value=1.5e+02 Score=21.38 Aligned_cols=64 Identities=8% Similarity=-0.101 Sum_probs=40.7
Q ss_pred cceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHH
Q 026021 34 VDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFL 113 (244)
Q Consensus 34 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 113 (244)
+++++.|..-... .+.+... ..+||+|.++.-.. .....++++++.+
T Consensus 32 ~eVi~LG~~vp~e-----~i~~~a~-----------~~~~d~V~lS~~~~-----------------~~~~~~~~~~~~L 78 (137)
T PRK02261 32 FEVINLGVMTSQE-----EFIDAAI-----------ETDADAILVSSLYG-----------------HGEIDCRGLREKC 78 (137)
T ss_pred CEEEECCCCCCHH-----HHHHHHH-----------HcCCCEEEEcCccc-----------------cCHHHHHHHHHHH
Confidence 8888888654222 2233333 38999998875322 2256678888888
Q ss_pred HhhC-CCceEEEEcCCCC
Q 026021 114 KNRW-PNTLVLLITPPPI 130 (244)
Q Consensus 114 ~~~~-p~~~vil~~~~~~ 130 (244)
++.+ ++.+|++.+.+..
T Consensus 79 ~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 79 IEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HhcCCCCCeEEEECCCCC
Confidence 8884 4666777776544
No 169
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=38.47 E-value=1.1e+02 Score=24.87 Aligned_cols=29 Identities=17% Similarity=0.017 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEE 133 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~ 133 (244)
...+..+++.++++ +++|+++|..+.++.
T Consensus 188 ~~~~~~~~~~ak~~--ga~iI~IT~~~~s~l 216 (278)
T PRK11557 188 RRELNLAADEALRV--GAKVLAITGFTPNAL 216 (278)
T ss_pred CHHHHHHHHHHHHc--CCCEEEEcCCCCCch
Confidence 45577788888886 678999998765443
No 170
>PRK00955 hypothetical protein; Provisional
Probab=38.45 E-value=1.4e+02 Score=27.74 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=53.2
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhc-cccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEE-Eec
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFS-RTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAV-FFG 81 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii-~~G 81 (244)
-|++-||.-... +.=+...+.+.|. ..+.|-..+.+.+... +.+.. ..+|+++.+ ..|
T Consensus 16 ~i~v~gdayvdh---p~fg~a~i~r~L~~~G~~v~ii~qp~~~~~------~~~~~-----------~g~P~l~~~vs~g 75 (620)
T PRK00955 16 FILVTGDAYVDH---PSFGTAIIGRVLEAEGFRVGIIAQPNWRDL------EDFKK-----------LGKPRLFFLVSAG 75 (620)
T ss_pred EEEEeCcccccC---CccHHHHHHHHHHHCCCEEEEecCCCcCCh------HHHHh-----------hCCCcEEEEeccc
Confidence 478889888732 1224455555552 2366666666665421 22222 378888775 555
Q ss_pred cCCCCCCCCCC-------------CCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 82 ANDACLPDRCG-------------AFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 82 ~ND~~~~~~~~-------------~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
.-|.+....+. +..+..++.- .-.+.+.+|+.+|++.|++-++-
T Consensus 76 ~~dsmv~~yt~~~~~r~~d~ytpgg~~~~rpdra---~i~y~~~ik~~~p~~~IvlGG~e 132 (620)
T PRK00955 76 NMDSMVNHYTASKKLRSKDAYSPGGKMGLRPDRA---TIVYCNKIKEAYPDVPIIIGGIE 132 (620)
T ss_pred cHHHHHhhcchhhhcccccccCCCCccCCCcchH---HHHHHHHHHHHCCCCcEEeCChh
Confidence 44543322111 1112223332 23344566666789888777764
No 171
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=38.26 E-value=61 Score=23.86 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=29.4
Q ss_pred HHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHh--hCCCceEEEE
Q 026021 48 WAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKN--RWPNTLVLLI 125 (244)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~--~~p~~~vil~ 125 (244)
.....+.+++. ..+|++|+| |++.. ....+.+.++++++.... ..+...|+++
T Consensus 50 ~~~~~l~~~i~-----------~~kP~vI~v--~g~~~------------~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v 104 (150)
T PF14639_consen 50 EDMERLKKFIE-----------KHKPDVIAV--GGNSR------------ESRKLYDDVRDIVEELDEDEQMPPIPVVIV 104 (150)
T ss_dssp HHHHHHHHHHH-----------HH--SEEEE----SST------------HHHHHHHHHHHHHHHTTB-TTS-B--EEE-
T ss_pred HHHHHHHHHHH-----------HcCCeEEEE--cCCCh------------hHHHHHHHHHHHHHHhhhcccCCCceEEEE
Confidence 44566777777 489999998 33433 356677778888876652 2344556555
Q ss_pred cC
Q 026021 126 TP 127 (244)
Q Consensus 126 ~~ 127 (244)
..
T Consensus 105 ~~ 106 (150)
T PF14639_consen 105 DD 106 (150)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 172
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.57 E-value=32 Score=27.14 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCCe-eechhHhhhhhhcccccccccccCChh
Q 026021 154 AAGAYAKACIEVAGECGLPV-VDLWTKMQQLADWKTAYLSDGLHLNET 200 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~~-iD~~~~~~~~~~~~~~~~~DgiHpn~~ 200 (244)
....+...++++|+++++++ |+-+-.+ -...-.||+|++..
T Consensus 55 ~~~~~a~~l~~l~~~~gv~liINd~~dl------A~~~~adGVHLg~~ 96 (221)
T PRK06512 55 TFQKQAEKLVPVIQEAGAAALIAGDSRI------AGRVKADGLHIEGN 96 (221)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEeCHHHH------HHHhCCCEEEECcc
Confidence 45577788999999999886 4432222 12345789999854
No 173
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=37.57 E-value=1.1e+02 Score=22.19 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 99 LHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 99 ~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
.......++..++..++. +...|++.+....
T Consensus 19 ~~~~~~R~~~a~~L~~~g-~~~~il~SGg~~~ 49 (155)
T PF02698_consen 19 SPESRERLDEAARLYKAG-YAPRILFSGGYGH 49 (155)
T ss_dssp --S-HHHHHHHHHHHH-H-HT--EEEE--SST
T ss_pred cHhHHHHHHHHHHHHhcC-CCCeEEECCCCCC
Confidence 344677888888888875 3445666654433
No 174
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=37.51 E-value=94 Score=26.14 Aligned_cols=51 Identities=8% Similarity=-0.121 Sum_probs=33.9
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhC-CCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRW-PNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~-p~~~vil~~~~ 128 (244)
....|+|||..|...-. .....+.+ ..-++++++.+.+.. |++.+++++.|
T Consensus 73 ~~~aDiVVitAG~~~~~--------~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 73 FTDVDVAILVGAFPRKE--------GMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred hCCCCEEEEcCCCCCCC--------CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 47799999999875331 11123333 345777888888884 88888888744
No 175
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=37.38 E-value=40 Score=21.74 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=18.1
Q ss_pred CeEEEEcccccccccCCCChHHHHHHhhccccceE
Q 026021 3 PKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVV 37 (244)
Q Consensus 3 ~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~ 37 (244)
++||++|-|.- + |...++...++...+.+
T Consensus 40 K~VLViGaStG-y-----GLAsRIa~aFg~gA~Ti 68 (78)
T PF12242_consen 40 KKVLVIGASTG-Y-----GLASRIAAAFGAGADTI 68 (78)
T ss_dssp SEEEEES-SSH-H-----HHHHHHHHHHCC--EEE
T ss_pred ceEEEEecCCc-c-----cHHHHHHHHhcCCCCEE
Confidence 48999999987 3 46677777776443333
No 176
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.91 E-value=1.4e+02 Score=21.18 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=35.3
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhcc-ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSR-TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
.|+.+||-+. .|...+.-...+.+.+.. .+++...+.-......+...+.+... ..|+||..-|
T Consensus 3 ~ii~~G~El~-~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~-------------~~DlvittGG 67 (133)
T cd00758 3 AIVTVSDELS-QGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR-------------EADLVLTTGG 67 (133)
T ss_pred EEEEeCcccc-CCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh-------------cCCEEEECCC
Confidence 5788999988 444323222233332311 15566666666555555555555443 3788887744
No 177
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=36.57 E-value=2.1e+02 Score=22.48 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.++|.+-..|. +.|..-.+.+...++...++++++|++.
T Consensus 71 ~~~d~illvfdis~~--------------~Sf~~i~~~w~~~~~~~~~~~piiLVgn 113 (222)
T cd04173 71 PDSDAVLICFDISRP--------------ETLDSVLKKWQGETQEFCPNAKVVLVGC 113 (222)
T ss_pred cCCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 577888888854443 4444444555556666667888888875
No 178
>PRK07714 hypothetical protein; Provisional
Probab=36.54 E-value=1e+02 Score=20.81 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechh
Q 026021 105 NLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWT 178 (244)
Q Consensus 105 ~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~ 178 (244)
..++..+.+++. +++++++.. +.-....+.+...|..++++++....
T Consensus 22 G~~~v~~al~~g--~~~lViiA~-------------------------D~s~~~~~ki~~~~~~~~vp~~~~~s 68 (100)
T PRK07714 22 GEELVLKEVRSG--KAKLVLLSE-------------------------DASVNTTKKITDKCTYYNVPMRKVEN 68 (100)
T ss_pred cHHHHHHHHHhC--CceEEEEeC-------------------------CCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 455666666664 566777765 11113345667788899999987643
No 179
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.44 E-value=2.9e+02 Score=24.12 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=13.2
Q ss_pred cCCccEEEEEeccCCC
Q 026021 70 RVSTIAVAVFFGANDA 85 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~ 85 (244)
-...|+++|..|++--
T Consensus 74 ~~~adv~fIavgTP~~ 89 (414)
T COG1004 74 VKDADVVFIAVGTPPD 89 (414)
T ss_pred HhcCCEEEEEcCCCCC
Confidence 4578999999998765
No 180
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=36.07 E-value=1.6e+02 Score=20.87 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=32.2
Q ss_pred EEEEcccccccccCCCC---hHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 5 IYLFGDSITESSFTYGG---WGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 5 il~iGDSit~~g~~~~~---~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
|+.+||.+.+.+...+. +...+-+.++ ..+....+.......+.+.+.+.. ...|+|++.-|
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G--~~~~~~~~v~Dd~~~I~~~l~~~~-------------~~~dliittGG 66 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELG--IEVTRYVIVPDDKEAIKEALREAL-------------ERADLVITTGG 66 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCC--CeEEEEEEeCCCHHHHHHHHHHHH-------------hCCCEEEEcCC
Confidence 78899999844332222 2233333333 344444444444444444444433 34788877755
Q ss_pred c
Q 026021 82 A 82 (244)
Q Consensus 82 ~ 82 (244)
+
T Consensus 67 ~ 67 (135)
T smart00852 67 T 67 (135)
T ss_pred C
Confidence 3
No 181
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=35.87 E-value=36 Score=22.12 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=29.9
Q ss_pred cEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCC
Q 026021 74 IAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPN 119 (244)
Q Consensus 74 d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~ 119 (244)
-++.|+.+.........-..+..++.+.|.+.++++.+.++...|.
T Consensus 31 vMl~vwWd~~Gvi~~e~L~~~~TIts~~Y~~ql~~l~~~l~~krp~ 76 (81)
T PF01359_consen 31 VMLSVWWDAKGVIHYELLPPGKTITSEYYCQQLDKLKQALREKRPE 76 (81)
T ss_dssp EEEEEEEETTEEEEEEEESTT---SHHHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEeeccCcEeeeeCCCCccccHHHHHHHHHHHHHHHHHhChH
Confidence 4666776665443322223346678999999999999999987653
No 182
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=35.87 E-value=1.5e+02 Score=24.87 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=33.7
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHH---HHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKH---NLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|+|..|..=- +...+.+-+.. -++++.+.+.+..|++.+++++.|
T Consensus 67 ~~~aDiVvitAG~prK--------pGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNP 120 (313)
T COG0039 67 LKGADIVVITAGVPRK--------PGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120 (313)
T ss_pred hcCCCEEEEeCCCCCC--------CCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCc
Confidence 4678899999875432 12344555544 456677777778898877777765
No 183
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=35.61 E-value=95 Score=26.47 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=33.1
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhc--cccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFS--RTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~--~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
||+++.||-. ....+.+-+. .++.++..+.+| .+.++.... .+||+|++-+
T Consensus 3 rVlvVddsal--------~R~~i~~~l~~~~~i~vv~~a~ng------~~a~~~~~~------------~~PDVi~ld~ 55 (350)
T COG2201 3 RVLVVDDSAL--------MRKVISDILNSDPDIEVVGTARNG------REAIDKVKK------------LKPDVITLDV 55 (350)
T ss_pred EEEEEcCcHH--------HHHHHHHHHhcCCCeEEEEecCCH------HHHHHHHHh------------cCCCEEEEec
Confidence 8999999988 3344555442 226777777777 333344333 8889988754
No 184
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=35.44 E-value=1.3e+02 Score=24.62 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
-..|++++.+|..=-.... .....+.++..+..+++.+.+++.+|++-+++-+-
T Consensus 169 AGaDiiv~H~GlT~gG~~G---a~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGG 222 (268)
T PF09370_consen 169 AGADIIVAHMGLTTGGSIG---AKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGG 222 (268)
T ss_dssp HT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECT
T ss_pred cCCCEEEecCCccCCCCcC---ccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5789999999976554322 23456899999999999999999998864443333
No 185
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=35.29 E-value=1.3e+02 Score=23.95 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|||.|+++|+++-. .+.....+....---++..|-+..... ...+.+... ....+|+|..
T Consensus 150 lrP~Vv~FGE~lp~------~~~~~~~~~~~~aDlllvvGTSl~V~p--a~~l~~~~~------------~~~~~v~iN~ 209 (235)
T cd01408 150 VKPDIVFFGESLPS------RFFSHMEEDKEEADLLIVIGTSLKVAP--FASLPSRVP------------SEVPRVLINR 209 (235)
T ss_pred ccCcEEECCCCCCH------HHHHHHHHHHhcCCEEEEECCCCeecc--HHHHHHHHh------------CCCcEEEEeC
Confidence 68999999998872 232333333332223666787776554 222333333 3355777776
Q ss_pred ccCC
Q 026021 81 GAND 84 (244)
Q Consensus 81 G~ND 84 (244)
+...
T Consensus 210 ~~~~ 213 (235)
T cd01408 210 EPVG 213 (235)
T ss_pred CCCC
Confidence 6443
No 186
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=34.99 E-value=35 Score=21.26 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCeeechhHhhhhhh-----ccccccccc-------ccCChhHHHHHHHHHHHHHhh
Q 026021 160 KACIEVAGECGLPVVDLWTKMQQLAD-----WKTAYLSDG-------LHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 160 ~~~~~~a~~~~v~~iD~~~~~~~~~~-----~~~~~~~Dg-------iHpn~~G~~~~a~~l~~~l~~ 215 (244)
+.++-+|.+.|...+|+|..+..... +...+..|. -|+|-.+-...++.+...+++
T Consensus 4 dilklvaaqvgsqwid~y~sla~aterevaafsngytadherayaalqhwtird~~~~~~~~~~~~rq 71 (84)
T cd08778 4 DILKLVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLISALRQ 71 (84)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccChHHHHHHHHHHHHH
Confidence 34566777778888888887765432 223344442 488888877777777666654
No 187
>PRK05442 malate dehydrogenase; Provisional
Probab=34.92 E-value=1.2e+02 Score=25.62 Aligned_cols=51 Identities=8% Similarity=-0.112 Sum_probs=33.5
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhC-CCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRW-PNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~-p~~~vil~~~~ 128 (244)
....|+|||..|.-.-. .....+.+ .+-++++.+.+.+.. |++.+++++.|
T Consensus 78 ~~daDiVVitaG~~~k~--------g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 78 FKDADVALLVGARPRGP--------GMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred hCCCCEEEEeCCCCCCC--------CCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 47889999998864331 12233333 345777888888865 68878777744
No 188
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=34.87 E-value=1.2e+02 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
+.+++.++.+++.+.+++.++++.|
T Consensus 185 ~~le~a~~~a~~~~~~vk~lll~nP 209 (447)
T PLN02607 185 QALEAAYQEAEAANIRVRGVLITNP 209 (447)
T ss_pred HHHHHHHHHHHHhCCCeeEEEEeCC
Confidence 4555666666666777887777654
No 189
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.80 E-value=2.4e+02 Score=23.72 Aligned_cols=15 Identities=7% Similarity=-0.279 Sum_probs=10.8
Q ss_pred CCccEEEEEeccCCC
Q 026021 71 VSTIAVAVFFGANDA 85 (244)
Q Consensus 71 ~~pd~vii~~G~ND~ 85 (244)
.+||.|++.....|.
T Consensus 194 ~~pd~V~~~~~~~~~ 208 (351)
T cd06334 194 SGPDYVILWGWGVMN 208 (351)
T ss_pred cCCCEEEEecccchH
Confidence 789999887654444
No 190
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.79 E-value=88 Score=22.15 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=27.5
Q ss_pred EEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 75 AVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 75 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
+|++.+|+-|. +-.+.++.+.+.+++++|+..|.+.-.
T Consensus 3 illv~fGS~~~---------------~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 3 ILLVSFGTSYP---------------TAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred EEEEeCCCCCH---------------HHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 56677775554 336788899999999999877766644
No 191
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=34.61 E-value=50 Score=25.91 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCCee-echhHhhhhhhcccccccccccCChh
Q 026021 156 GAYAKACIEVAGECGLPVV-DLWTKMQQLADWKTAYLSDGLHLNET 200 (244)
Q Consensus 156 ~~~~~~~~~~a~~~~v~~i-D~~~~~~~~~~~~~~~~~DgiHpn~~ 200 (244)
......++++|++++++|+ +-+-.+ -.....||+|....
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd~~dl------A~~~~AdGVHlGq~ 90 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIINDRVDL------ALAVGADGVHLGQD 90 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecCcHHH------HHhCCCCEEEcCCc
Confidence 5677899999999999864 332222 12366899998766
No 192
>PRK00549 competence damage-inducible protein A; Provisional
Probab=33.73 E-value=1.3e+02 Score=26.38 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCCeEEEEcccccccccCCCC---hHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEE
Q 026021 1 MRPKIYLFGDSITESSFTYGG---WGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVA 77 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~---~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vi 77 (244)
|+-.|+.+||.+. .|...+. |....-..++ +.+.....-+.....+...+... ....|+||
T Consensus 1 m~~~ii~~G~Ell-~G~i~DtN~~~L~~~L~~~G--~~v~~~~~v~Dd~~~I~~~l~~a-------------~~~~DlVI 64 (414)
T PRK00549 1 MKAEIIAVGTELL-LGQIVNTNAQFLSEKLAELG--IDVYHQTVVGDNPERLLSALEIA-------------EERSDLII 64 (414)
T ss_pred CEEEEEEeccccc-CCceeEhhHHHHHHHHHHCC--CeEEEEEEeCCCHHHHHHHHHHh-------------ccCCCEEE
Confidence 6667999999999 5543222 4333333344 66666677776666555555432 25679998
Q ss_pred EEec
Q 026021 78 VFFG 81 (244)
Q Consensus 78 i~~G 81 (244)
+.-|
T Consensus 65 tTGG 68 (414)
T PRK00549 65 TTGG 68 (414)
T ss_pred ECCC
Confidence 8844
No 193
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=33.68 E-value=2.1e+02 Score=22.97 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=37.6
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...||+||...|+. ....+.- +.-.++++-..+.=+.....+|.. +.+|++++.
T Consensus 246 ef~Pd~VvYNAGTD-iLeGDpL-G~L~ISp~Gi~~RDelVFr~~R~~--~iPvvMltS 299 (324)
T KOG1344|consen 246 EFRPDMVVYNAGTD-ILEGDPL-GNLAISPEGIIERDELVFRTFRAL--GIPVVMLTS 299 (324)
T ss_pred hhCCcEEEEeCCCc-cccCCCC-CCeeecccccchhhHHHHHHHHHc--CCcEEEEec
Confidence 38999999999974 4332211 123467788888888888999987 455777766
No 194
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=33.64 E-value=1.1e+02 Score=25.63 Aligned_cols=51 Identities=12% Similarity=-0.074 Sum_probs=32.2
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhCCC-ceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRWPN-TLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~p~-~~vil~~~~ 128 (244)
....|+|||..|...-. .....+.+ .+-++.++..+.+..|+ +.+++++.|
T Consensus 58 ~~daDiVVitaG~~~k~--------g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNP 112 (313)
T TIGR01756 58 FKDIDCAFLVASVPLKP--------GEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNP 112 (313)
T ss_pred hCCCCEEEECCCCCCCc--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 47889999999975431 12233333 34577777788888754 556666643
No 195
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=33.63 E-value=2e+02 Score=21.34 Aligned_cols=41 Identities=7% Similarity=-0.017 Sum_probs=25.9
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..||+|++-+...+.. . ..+++.++...|.++|++++...-
T Consensus 48 ~~~dlvild~~l~~~~------------g-------~~~~~~l~~~~~~~~ii~ls~~~~ 88 (210)
T PRK09935 48 RPVDLIIMDIDLPGTD------------G-------FTFLKRIKQIQSTVKVLFLSSKSE 88 (210)
T ss_pred cCCCEEEEeCCCCCCC------------H-------HHHHHHHHHhCCCCcEEEEECCCc
Confidence 6799998866443321 1 244555666667788888876543
No 196
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=33.48 E-value=2.2e+02 Score=21.74 Aligned_cols=44 Identities=7% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..||+|++-+..-|... . .-..+++.+++..|.++|++++...-
T Consensus 48 ~~~DlvllD~~l~~~~~---------------~-~g~~~~~~l~~~~~~~~iIvls~~~~ 91 (216)
T PRK10840 48 LDAHVLITDLSMPGDKY---------------G-DGITLIKYIKRHFPSLSIIVLTMNNN 91 (216)
T ss_pred CCCCEEEEeCcCCCCCC---------------C-CHHHHHHHHHHHCCCCcEEEEEecCC
Confidence 67999988654333200 0 01245666676678888999987643
No 197
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=33.29 E-value=1e+02 Score=22.20 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 50 VKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 50 ~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...+.+++. ...++.+||-+-.|-... ........+++.+.++++.|+.+|+++-=
T Consensus 40 ~~~l~~li~-----------~~~i~~iVvGlP~~~~G~-----------~~~~~~~v~~f~~~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 40 IEELKKLIE-----------EYQIDGIVVGLPLNMDGS-----------ESEQARRVRKFAEELKKRFPGIPVILVDE 95 (135)
T ss_dssp HHHHHHHHH-----------HCCECEEEEEEEBBCTSS-----------C-CCHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred HHHHHHHHH-----------HhCCCEEEEeCCcccCCC-----------ccHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 445666666 488999999988776542 22235666777777777767888888853
No 198
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=33.03 E-value=1.1e+02 Score=23.94 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=28.0
Q ss_pred CccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 72 STIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 72 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
+||+|++-+...|. ..++.+.+.++...|+++|++++...-
T Consensus 52 ~~DvvllDi~~p~~------------------~G~~~~~~~i~~~~p~~~vvvlt~~~~ 92 (216)
T PRK10100 52 SGSIILLDMMEADK------------------KLIHYWQDTLSRKNNNIKILLLNTPED 92 (216)
T ss_pred CCCEEEEECCCCCc------------------cHHHHHHHHHHHhCCCCcEEEEECCch
Confidence 48999987765443 133333456677789999999998653
No 199
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.00 E-value=1.8e+02 Score=22.98 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 105 NLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 105 ~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.-+++++.+...+. +.|+++=..|.+.. .....=..+.+.++++++..++.++|-
T Consensus 147 ~pReI~~~Al~~~A-~~vIlaHNHPSG~~----------------~PS~~Di~~T~~l~~a~~~lgI~llDH 201 (218)
T TIGR00608 147 HPREIFKEALKLSA-SALILAHNHPSGEP----------------SPSQEDILITERLRKAAELLGIELLDH 201 (218)
T ss_pred cHHHHHHHHHHhhC-CeEEEEeecCCCCC----------------CCCHHHHHHHHHHHHHHHhCCCEEeeE
Confidence 34666666666543 34555544444322 111223367788999999999999995
No 200
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=32.99 E-value=98 Score=27.39 Aligned_cols=51 Identities=8% Similarity=-0.101 Sum_probs=33.9
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHh-hCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKN-RWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~-~~p~~~vil~~~~ 128 (244)
..+.|+|||..|.-.- ......+.+ ..-++++.+.+.+ ..|++.|++++.|
T Consensus 174 ~kdaDiVVitAG~prk--------pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 174 FQDAEWALLIGAKPRG--------PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred hCcCCEEEECCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 4678889888876322 112233333 3457788888888 6899988888854
No 201
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=32.98 E-value=1.6e+02 Score=20.12 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhcCCC--eeec
Q 026021 154 AAGAYAKACIEVAGECGLP--VVDL 176 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~--~iD~ 176 (244)
.++-+-..+++.++.++++ +||.
T Consensus 57 Qv~y~~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 57 QVRYMLKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred HHHHHHHHHHHHhcccCCCeEEeCH
Confidence 3445567788888888755 4664
No 202
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.90 E-value=1.7e+02 Score=24.55 Aligned_cols=51 Identities=14% Similarity=-0.036 Sum_probs=33.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHH---HHHHHHHHHhhC-CCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHN---LHSIVSFLKNRW-PNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~~v~~~~~~~-p~~~vil~~~~ 128 (244)
....|+||+..|.-... ...+.+.+..| +++++..+.+.. |++.+++++.|
T Consensus 76 l~~aDiVI~tAG~~~~~--------~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 76 FKDVDVAILVGAMPRKE--------GMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred hCCCCEEEEeCCcCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 46799999999865431 11234444444 456777788874 78888888754
No 203
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.71 E-value=1.2e+02 Score=25.20 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=34.0
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChh---HHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLH---EYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~---~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+|+|..|..-.. .....+ .=..-++++++.+++..|+..+++++.|
T Consensus 65 l~~aDiViita~~~~~~--------~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP 118 (308)
T cd05292 65 CKGADVVVITAGANQKP--------GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNP 118 (308)
T ss_pred hCCCCEEEEccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46789999999865321 111122 2345677888888888899888888654
No 204
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=32.64 E-value=1.3e+02 Score=20.56 Aligned_cols=49 Identities=8% Similarity=0.258 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhH
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTK 179 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~ 179 (244)
...++..+.+++. +++++++.. +.-....+.+...|+.++++++.++..
T Consensus 20 ~G~~~v~~aik~g--k~~lVI~A~-------------------------D~s~~~kkki~~~~~~~~vp~~~~~t~ 68 (104)
T PRK05583 20 EGYNKCEEAIKKK--KVYLIIISN-------------------------DISENSKNKFKNYCNKYNIPYIEGYSK 68 (104)
T ss_pred ecHHHHHHHHHcC--CceEEEEeC-------------------------CCCHhHHHHHHHHHHHcCCCEEEecCH
Confidence 3455666777764 566666665 122234466677788889999887543
No 205
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=31.94 E-value=1.1e+02 Score=26.57 Aligned_cols=51 Identities=10% Similarity=-0.121 Sum_probs=32.5
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHH---HHHHHHHHHHHHhhC-CCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEY---KHNLHSIVSFLKNRW-PNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~~~~~-p~~~vil~~~~ 128 (244)
..+.|+|||..|.-.- ......+.+ ..-++++.+.+.+.. |++.+++++.|
T Consensus 118 ~kdaDIVVitAG~prk--------pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 118 FEDADWALLIGAKPRG--------PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred hCCCCEEEECCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 4778999998875322 112233333 345777777887754 88888888854
No 206
>PRK07283 hypothetical protein; Provisional
Probab=31.87 E-value=1.3e+02 Score=20.21 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhcCCCeeechh
Q 026021 157 AYAKACIEVAGECGLPVVDLWT 178 (244)
Q Consensus 157 ~~~~~~~~~a~~~~v~~iD~~~ 178 (244)
...+.+.+.|+.++++++..+.
T Consensus 47 ~~~kk~~~~~~~~~Vp~~~~~t 68 (98)
T PRK07283 47 NLTKKVTDKSNYYQVEVSTVFS 68 (98)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC
Confidence 3345566678888999987753
No 207
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=31.84 E-value=2.4e+02 Score=21.74 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=18.5
Q ss_pred HHHHHHHhhCCCceEEEEcCCC
Q 026021 108 SIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 108 ~~v~~~~~~~p~~~vil~~~~~ 129 (244)
++++.+++..|+++|++++...
T Consensus 66 ~~i~~i~~~~p~~~iivlt~~~ 87 (207)
T PRK15411 66 QRIKQIINQHPNTLFIVFMAIA 87 (207)
T ss_pred HHHHHHHHHCCCCeEEEEECCC
Confidence 4888898889999999998753
No 208
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=31.60 E-value=1.6e+02 Score=22.01 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=28.4
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.+++.+...|. +.|...++..+..+++..|++++++++.
T Consensus 71 ~~a~~~ilvfdit~~--------------~Sf~~~~~~w~~~i~~~~~~~~iilVgn 113 (178)
T cd04131 71 PDSDAVLICFDISRP--------------ETLDSVLKKWRGEIQEFCPNTKVLLVGC 113 (178)
T ss_pred CCCCEEEEEEECCCh--------------hhHHHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 466888888854443 3444444666677777667888888875
No 209
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=31.45 E-value=2.5e+02 Score=21.88 Aligned_cols=41 Identities=7% Similarity=-0.028 Sum_probs=26.3
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..||+|++-+..-|.. --++++.+++..|.++|++++....
T Consensus 48 ~~~DlvilD~~~p~~~-------------------G~eli~~l~~~~~~~~vI~ls~~~~ 88 (239)
T PRK10430 48 TPIDLILLDIYMQQEN-------------------GLDLLPVLHEAGCKSDVIVISSAAD 88 (239)
T ss_pred CCCCEEEEecCCCCCC-------------------cHHHHHHHHhhCCCCCEEEEECCCc
Confidence 5789998866433321 1245566666677888998886544
No 210
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=31.35 E-value=2.5e+02 Score=21.79 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=49.0
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCc
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPE 149 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (244)
..+||+|++-++.-+.. =-++++.+++..|.++|++++...-..........|-.++-...
T Consensus 44 ~~~pdvvl~Dl~mP~~~-------------------G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~ 104 (211)
T COG2197 44 ELKPDVVLLDLSMPGMD-------------------GLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKD 104 (211)
T ss_pred hcCCCEEEEcCCCCCCC-------------------hHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCC
Confidence 48999999886654431 13456677788899999999987665544444333322221111
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 150 RTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 150 ~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.....+.++++.++. |-.|++-
T Consensus 105 ---~~~~~l~~ai~~v~~--G~~~~~~ 126 (211)
T COG2197 105 ---ASPEELVEAIRAVAA--GGTYLPP 126 (211)
T ss_pred ---CCHHHHHHHHHHHHC--CCeEeCH
Confidence 223346666666554 4456654
No 211
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=31.15 E-value=1.5e+02 Score=25.99 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=41.1
Q ss_pred CCCeEEEEcccccccccCCC---ChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEE
Q 026021 1 MRPKIYLFGDSITESSFTYG---GWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVA 77 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~---~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vi 77 (244)
||--|+.+||-+. .|...+ .|....-+.++ +.+.....-+.....+...+.+.. .+.|+||
T Consensus 1 m~v~Ii~tGdEll-~G~i~dtN~~~l~~~L~~~G--~~v~~~~~v~Dd~~~i~~~l~~a~-------------~~~DlVI 64 (413)
T TIGR00200 1 LKAEIISVGDELL-LGQIVNTNAQWLADFLAHQG--LPLSRRTTVGDNPERLKTIIRIAS-------------ERADVLI 64 (413)
T ss_pred CEEEEEEECcccc-CCcEEEchHHHHHHHHHHCC--CeEEEEEEeCCCHHHHHHHHHHHh-------------cCCCEEE
Confidence 7667899999998 554322 24444444444 667777777776665555554332 4689999
Q ss_pred EEec
Q 026021 78 VFFG 81 (244)
Q Consensus 78 i~~G 81 (244)
+.-|
T Consensus 65 ttGG 68 (413)
T TIGR00200 65 FNGG 68 (413)
T ss_pred EcCC
Confidence 8854
No 212
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=31.06 E-value=27 Score=29.66 Aligned_cols=101 Identities=20% Similarity=0.185 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhh-----CCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 102 YKHNLHSIVSFLKNR-----WPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 102 ~~~~l~~~v~~~~~~-----~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.+...+++-+++..+ -|++.++++.|..+.-+-... .+...-+.-+.+-.+.....++++|++++|+++.-
T Consensus 235 iK~rrR~~~re~~~~~~~~~V~~A~vVItNPTH~AVAL~Y~----~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~VPiven 310 (343)
T PF01312_consen 235 IKSRRRQLQREMARRRMMAAVPKADVVITNPTHYAVALRYD----PGEMPAPIVVAKGADELALRIREIAREHGVPIVEN 310 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SEEEEETTTEEEEEEEE----TTTCSSEEEEEEEECHHHHHHHHHHHHHT--EEE-
T ss_pred HHHHHHHHHHHHHhhhhhccCCcCcEEEECCcceeEEEEeC----CCCCCCCEEeeeccHHHHHHHHHHHHHcCCCeeeC
Confidence 344555555544432 378889999887653222111 11112222333445677899999999999999985
Q ss_pred hhHhhhhhhcccccccccccCChhHHHHHHHHHH
Q 026021 177 WTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVV 210 (244)
Q Consensus 177 ~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~ 210 (244)
-..-..-.. .... |----++-|+.+|+.+.
T Consensus 311 ~pLARaLy~---~~~~-g~~IP~ely~aVA~il~ 340 (343)
T PF01312_consen 311 PPLARALYR---TVEV-GQEIPEELYEAVAEILA 340 (343)
T ss_dssp HHHHHHHHH---HS-T-TSB--GGGHHHHHHHHH
T ss_pred HHHHHHHHh---cCCC-CCcCCHHHHHHHHHHHH
Confidence 433222111 0001 11223446777777654
No 213
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=30.54 E-value=1.6e+02 Score=21.29 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=36.6
Q ss_pred eEEEEccccccccc------CCCC---hHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCcc
Q 026021 4 KIYLFGDSITESSF------TYGG---WGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTI 74 (244)
Q Consensus 4 ~il~iGDSit~~g~------~~~~---~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd 74 (244)
.|+.+||.+.+-+. ..+. +...+-+.++ +++...++.+.....+...+.+.. .+.|
T Consensus 4 ~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~-------------~~~D 68 (144)
T TIGR00177 4 AVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAG--FNVSRLGIVPDDPEEIREILRKAV-------------DEAD 68 (144)
T ss_pred EEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCC--CeEEEEeecCCCHHHHHHHHHHHH-------------hCCC
Confidence 57889999995222 1122 2333333334 667777777766655554444322 4689
Q ss_pred EEEEEec
Q 026021 75 AVAVFFG 81 (244)
Q Consensus 75 ~vii~~G 81 (244)
+||+.-|
T Consensus 69 liIttGG 75 (144)
T TIGR00177 69 VVLTTGG 75 (144)
T ss_pred EEEECCC
Confidence 9988854
No 214
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=30.35 E-value=3.9e+02 Score=24.48 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=16.6
Q ss_pred cccccccccccCChhHHHHHHH
Q 026021 186 WKTAYLSDGLHLNETGNRVVFE 207 (244)
Q Consensus 186 ~~~~~~~DgiHpn~~G~~~~a~ 207 (244)
|.+.|-.|+|-++++..+.+..
T Consensus 453 AkkIYGA~~V~~s~~A~kqL~~ 474 (557)
T PRK13505 453 ATKIYGAKGVEFSPKAKKQLKQ 474 (557)
T ss_pred HHHccCCCCeeECHHHHHHHHH
Confidence 4557888999999887776654
No 215
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=30.29 E-value=1.1e+02 Score=22.98 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=27.1
Q ss_pred CccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 72 STIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 72 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
+|++++++...+ +....+ +++.+++..|.+.++-++..
T Consensus 1 ~p~lvi~f~s~~------------------~~~~~~-i~~~l~~~~p~~~iiG~st~ 38 (198)
T PF08495_consen 1 RPDLVILFCSPE------------------YDEEAK-ILEALRERLPDAPIIGCSTA 38 (198)
T ss_pred CCEEEEEEecch------------------hhhhHH-HHHHHHHHCCCCcEEEEccC
Confidence 578888886533 233444 88888898888888888765
No 216
>PRK13925 rnhB ribonuclease HII; Provisional
Probab=29.97 E-value=2.6e+02 Score=21.63 Aligned_cols=45 Identities=13% Similarity=-0.015 Sum_probs=27.3
Q ss_pred CCeeechhHhhhh-hhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 171 LPVVDLWTKMQQL-ADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 171 v~~iD~~~~~~~~-~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
..++|.+...... .........|..||+-+..-++|+..-+.+..
T Consensus 106 ~v~iD~~~~~~~~~~~~~~v~kaD~~~~~VaAASIiAKV~RD~~m~ 151 (198)
T PRK13925 106 LCLVDGNLPLRLWPGPQRTIVKGDSKSAAIAAASILAKVWRDDLIK 151 (198)
T ss_pred EEEECCccccCcCCCCceeecccccccHHHHHHHHHHHHHHHHHHH
Confidence 3567766422111 11123346899999999999999766555444
No 217
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=29.95 E-value=2.7e+02 Score=21.67 Aligned_cols=130 Identities=14% Similarity=0.027 Sum_probs=68.5
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCcc
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPER 150 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (244)
...|.||-.+|.-... ....+....+.+++.++... .++++|++..-.-.........+. ...+..
T Consensus 61 ~g~DaVIsA~~~~~~~-----------~~~~~~k~~~~li~~l~~ag-v~RllVVGGAGSL~id~g~rLvD~--p~fP~e 126 (211)
T COG2910 61 AGHDAVISAFGAGASD-----------NDELHSKSIEALIEALKGAG-VPRLLVVGGAGSLEIDEGTRLVDT--PDFPAE 126 (211)
T ss_pred cCCceEEEeccCCCCC-----------hhHHHHHHHHHHHHHHhhcC-CeeEEEEcCccceEEcCCceeecC--CCCchh
Confidence 5678999888865431 24556777888888888865 467888865422111000000000 001111
Q ss_pred ch---HHHHHHHHHHHHHHHhcCCCeeechhHhhhhhh-cccccccccccCChhH-----HHHHHHHHHHHHhh
Q 026021 151 TN---EAAGAYAKACIEVAGECGLPVVDLWTKMQQLAD-WKTAYLSDGLHLNETG-----NRVVFEEVVMKLKT 215 (244)
Q Consensus 151 ~~---~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~-~~~~~~~DgiHpn~~G-----~~~~a~~l~~~l~~ 215 (244)
.- ......-+.++.-.. .+++|+.--..|..... -......|-+--|++| |.-+|-++.+.|.+
T Consensus 127 y~~~A~~~ae~L~~Lr~~~~-l~WTfvSPaa~f~PGerTg~yrlggD~ll~n~~G~SrIS~aDYAiA~lDe~E~ 199 (211)
T COG2910 127 YKPEALAQAEFLDSLRAEKS-LDWTFVSPAAFFEPGERTGNYRLGGDQLLVNAKGESRISYADYAIAVLDELEK 199 (211)
T ss_pred HHHHHHHHHHHHHHHhhccC-cceEEeCcHHhcCCccccCceEeccceEEEcCCCceeeeHHHHHHHHHHHHhc
Confidence 11 111222222322222 46777776555543111 1112457777788888 77888888888865
No 218
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=29.71 E-value=1e+02 Score=26.77 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=39.2
Q ss_pred cChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCC-Ceee
Q 026021 97 VPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGL-PVVD 175 (244)
Q Consensus 97 ~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v-~~iD 175 (244)
++.++..-.++++.+.+++.-|+ +++.+..-.... . .. +.++++|++.|. .++|
T Consensus 146 vd~et~~IDyD~~~k~a~e~kPK--~ii~G~SaY~r~------------------i-d~----~~~reIad~VGA~L~~D 200 (413)
T COG0112 146 VDPETGLIDYDEVEKLAKEVKPK--LIIAGGSAYSRP------------------I-DF----KRFREIADEVGAYLMVD 200 (413)
T ss_pred cccccCccCHHHHHHHHHHhCCC--EEEECccccccc------------------c-CH----HHHHHHHHHhCceEEeh
Confidence 44566777899999999998665 888776322211 0 01 567788888774 4688
Q ss_pred chhHhh
Q 026021 176 LWTKMQ 181 (244)
Q Consensus 176 ~~~~~~ 181 (244)
+-....
T Consensus 201 mAHiaG 206 (413)
T COG0112 201 MAHVAG 206 (413)
T ss_pred HHHHHH
Confidence 766543
No 219
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=29.66 E-value=2e+02 Score=20.17 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 105 NLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 105 ~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
..+++++.+...+. +.++++=.-|.+.. ...+.=..+.+.+++.++..++.++|-
T Consensus 52 ~~R~I~~~al~~~A-~~vIl~HNHPsG~~----------------~PS~~D~~~T~~L~~~~~~l~I~llDH 106 (123)
T PF04002_consen 52 DPREIFRRALRLNA-SSVILAHNHPSGDP----------------EPSDADIALTRRLKKAARLLGIELLDH 106 (123)
T ss_dssp SHHHHHHHHHHTT--SEEEEEEE-TTS------------------S--HHHHHHHHHHHHHHHHHT-EEEEE
T ss_pred cHHHHHHHHHhhCC-ceEEEEEEcCCCCC----------------CCCHhHHHHHHHHHHHHHHcCCeeeeE
Confidence 45667777777653 34555544343322 112334467788999999999999995
No 220
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=29.38 E-value=1.8e+02 Score=21.87 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=28.3
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.+++.+-..|. +.|..-+...++.+++..|+++++|++.
T Consensus 75 ~~ad~~ilvyDit~~--------------~Sf~~~~~~w~~~i~~~~~~~piilVgN 117 (182)
T cd04172 75 PDSDAVLICFDISRP--------------ETLDSVLKKWKGEIQEFCPNTKMLLVGC 117 (182)
T ss_pred CCCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHHHCCCCCEEEEeE
Confidence 567888888754333 4444444666777777667788888875
No 221
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.00 E-value=3.1e+02 Score=22.67 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEc
Q 026021 47 RWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLIT 126 (244)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~ 126 (244)
......++.+-.. ...|.+++|.+|.+... ..+.+...+.+++.+-.+.++-+.
T Consensus 15 ~~l~~~v~~l~~~----------g~~P~Laii~vg~d~as----------------~~Yv~~k~k~a~~~Gi~~~~~~l~ 68 (282)
T PRK14169 15 ADLKQTVAKLAQQ----------DVTPTLAVVLVGSDPAS----------------EVYVRNKQRRAEDIGVRSLMFRLP 68 (282)
T ss_pred HHHHHHHHHHHhC----------CCCCeEEEEEeCCChhH----------------HHHHHHHHHHHHHcCCEEEEEECC
Q ss_pred CCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccc-------cccccCCh
Q 026021 127 PPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYL-------SDGLHLNE 199 (244)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~-------~DgiHpn~ 199 (244)
. +...+++.+.++++.....+.=|=+..++-.+-+....+. .||+||-.
T Consensus 69 ~------------------------~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N 124 (282)
T PRK14169 69 E------------------------ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVS 124 (282)
T ss_pred C------------------------CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhh
Q ss_pred hHH
Q 026021 200 TGN 202 (244)
Q Consensus 200 ~G~ 202 (244)
.|.
T Consensus 125 ~g~ 127 (282)
T PRK14169 125 VGR 127 (282)
T ss_pred hHH
No 222
>PRK13949 shikimate kinase; Provisional
Probab=28.98 E-value=2.4e+02 Score=20.92 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=25.3
Q ss_pred eEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhh
Q 026021 121 LVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQ 182 (244)
Q Consensus 121 ~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~ 182 (244)
+|+|++++..+.. ...+.+|+..+++++|+...+..
T Consensus 3 ~I~liG~~GsGKs--------------------------tl~~~La~~l~~~~id~D~~i~~ 38 (169)
T PRK13949 3 RIFLVGYMGAGKT--------------------------TLGKALARELGLSFIDLDFFIEN 38 (169)
T ss_pred EEEEECCCCCCHH--------------------------HHHHHHHHHcCCCeecccHHHHH
Confidence 4888888777655 44455677778888888766543
No 223
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=28.97 E-value=2.7e+02 Score=23.00 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCCee
Q 026021 160 KACIEVAGECGLPVV 174 (244)
Q Consensus 160 ~~~~~~a~~~~v~~i 174 (244)
+.+.++|+++++.++
T Consensus 104 ~~l~~~a~~~giril 118 (286)
T TIGR01019 104 LKVKRYMEESGTRLI 118 (286)
T ss_pred HHHHHHHHHcCCEEE
Confidence 667778888877665
No 224
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.93 E-value=2.3e+02 Score=23.08 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=10.0
Q ss_pred CCccEEEEEeccCCC
Q 026021 71 VSTIAVAVFFGANDA 85 (244)
Q Consensus 71 ~~pd~vii~~G~ND~ 85 (244)
.+||+|++....+|.
T Consensus 191 ~~pd~v~~~~~~~~~ 205 (312)
T cd06346 191 GGPDALVVIGYPETG 205 (312)
T ss_pred cCCCEEEEecccchH
Confidence 788988877544433
No 225
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=28.92 E-value=2e+02 Score=19.89 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCCCeeec
Q 026021 157 AYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 157 ~~~~~~~~~a~~~~v~~iD~ 176 (244)
.+.+.++++++..++.++|-
T Consensus 82 ~~T~~l~~~~~~l~i~llDH 101 (113)
T cd08071 82 ELTKRLKEAGELLGIRLLDH 101 (113)
T ss_pred HHHHHHHHHHHHCCCEEeeE
Confidence 55688999999999999994
No 226
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=28.91 E-value=1.2e+02 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=18.6
Q ss_pred CccchHHHHHHHHHHHHHHHhcCCCe
Q 026021 148 PERTNEAAGAYAKACIEVAGECGLPV 173 (244)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~a~~~~v~~ 173 (244)
.+.+.+..+.|.++++++.++++..+
T Consensus 261 ~e~Vd~~H~~Y~~~L~~LFd~~K~~~ 286 (297)
T PF03982_consen 261 QEDVDKLHARYIEALRELFDKHKAKY 286 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777788888888888765544
No 227
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=28.79 E-value=3.1e+02 Score=24.71 Aligned_cols=57 Identities=21% Similarity=0.101 Sum_probs=39.3
Q ss_pred CCccEEEEEeccCCCCCCC-CCCCCc-ccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 026021 71 VSTIAVAVFFGANDACLPD-RCGAFQ-HVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPID 131 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~-~~~~~~-~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~ 131 (244)
.+.|.+||++ |....+ ...... ..+.++..+.+ +.++.+++.+|+.+|++.+..+..
T Consensus 57 ~~~d~~ViS~---D~L~yGGLv~SR~~~~~~~~~~~rl-~~l~~lk~~~p~~~iyaf~~ImR~ 115 (497)
T PF13552_consen 57 PDADAAVIST---DMLLYGGLVPSRIHHLSLEEALERL-ERLRELKARNPNLPIYAFSTIMRT 115 (497)
T ss_pred ccCCEEEEEH---HhhhhcCcHhhcCCCCCHHHHHHHH-HHHHHHHHHCCCCeEEEEEEEecc
Confidence 6889999996 654432 222222 33566666666 788899999999999998876553
No 228
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.65 E-value=1.9e+02 Score=19.58 Aligned_cols=19 Identities=5% Similarity=0.041 Sum_probs=14.5
Q ss_pred cCCcchHHHHHHHHhhccc
Q 026021 41 YSGYNTRWAVKVMERVLPA 59 (244)
Q Consensus 41 ~~G~~~~~~~~~l~~~~~~ 59 (244)
-+|.||......+.+...+
T Consensus 8 ~~GaSSs~la~km~~~a~~ 26 (99)
T cd05565 8 AGGGTSGLLANALNKGAKE 26 (99)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4558888888888888874
No 229
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=28.63 E-value=1.4e+02 Score=23.50 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|||.|+++|+++-. ..|.. ..+....---++..|-+.....- ..+.+... .....+|+|..
T Consensus 146 lrP~Vv~fgE~lp~-----~~~~~-a~~~~~~~Dl~lvvGTSl~V~p~--~~l~~~a~-----------~~g~~~i~iN~ 206 (222)
T cd01413 146 IRPDVVLFGEPLPQ-----ALLRE-AIEAAKEADLFIVLGSSLVVYPA--NLLPLIAK-----------ENGAKLVIVNA 206 (222)
T ss_pred cCCCEEECCCCCCH-----HHHHH-HHHHHhcCCEEEEEccCCEeccH--hHHHHHHH-----------HcCCeEEEEcC
Confidence 68999999998872 12322 22333221236677888765442 23333333 25567788887
Q ss_pred ccCCC
Q 026021 81 GANDA 85 (244)
Q Consensus 81 G~ND~ 85 (244)
+..+.
T Consensus 207 ~~~~~ 211 (222)
T cd01413 207 DETPF 211 (222)
T ss_pred CCCCC
Confidence 76544
No 230
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=28.21 E-value=1.4e+02 Score=23.29 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCe-eechhHhhhhhhcccccccccccCChhH
Q 026021 154 AAGAYAKACIEVAGECGLPV-VDLWTKMQQLADWKTAYLSDGLHLNETG 201 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~~-iD~~~~~~~~~~~~~~~~~DgiHpn~~G 201 (244)
....+...+.++|+++++++ |+-+..+ ...+..||+|.+..-
T Consensus 47 ~~~~la~~l~~~~~~~~~~liInd~~~l------A~~~~adGVHlg~~d 89 (211)
T PRK03512 47 EVEADVVAAIALGRRYQARLFINDYWRL------AIKHQAYGVHLGQED 89 (211)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeCHHHH------HHHcCCCEEEcChHh
Confidence 45566777788889888774 4432222 223567999998664
No 231
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.96 E-value=2.7e+02 Score=22.30 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCe
Q 026021 100 HEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPV 173 (244)
Q Consensus 100 ~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~ 173 (244)
+...+.+++.++.++..+ ++.+++.+...+.. ...+...+.+...-+.+.++|+++|+.+
T Consensus 86 ~~~~~~~~~~i~~a~~lG--a~~i~~~~~~~~~~------------~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMN--AGYTLISAAHAGYL------------TPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHHHHHHHHHhC--CCEEEEcCCCCCCC------------CCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 345667778888888874 55666644221100 0011122333344455566667788765
No 232
>PRK00024 hypothetical protein; Reviewed
Probab=27.95 E-value=2.3e+02 Score=22.40 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCCCeeec
Q 026021 156 GAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 156 ~~~~~~~~~~a~~~~v~~iD~ 176 (244)
..+.+.++++++-.++.++|-
T Consensus 187 ~~~T~~l~~a~~~l~I~llDH 207 (224)
T PRK00024 187 ILITKRLKEAGELLGIRLLDH 207 (224)
T ss_pred HHHHHHHHHHHHhCCCEEeeE
Confidence 367888999999999999995
No 233
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=27.94 E-value=2.3e+02 Score=21.24 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcC------CCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHh
Q 026021 101 EYKHNLHSIVSFLKNRWPNTLVLLITP------PPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGE 168 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~p~~~vil~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 168 (244)
.+...+.++++.+++. ++.+++++. .|.+... ....+....+|+.+.+.|++
T Consensus 100 ~~~~~i~~l~~~l~~~--~~~~viVsnEvG~g~vp~~~~~--------------r~f~d~lG~lnq~la~~ad~ 157 (169)
T cd00544 100 AIADEIDALLAAVRNK--PGTLILVSNEVGLGVVPENALG--------------RRFRDELGRLNQRLAALADE 157 (169)
T ss_pred HHHHHHHHHHHHHHcC--CCcEEEEECCcCCCCCCCCHHH--------------HHHHHHHHHHHHHHHHHCCE
Confidence 3567788888988886 344666642 1222221 13446677788888777765
No 234
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=27.69 E-value=2.7e+02 Score=21.08 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=25.1
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..||+|++-+..-+. + -..+++.+++..+.+++++++....
T Consensus 43 ~~~dlvild~~~~~~------------~-------g~~~~~~lr~~~~~~pii~ls~~~~ 83 (227)
T PRK09836 43 GDYDLIILDIMLPDV------------N-------GWDIVRMLRSANKGMPILLLTALGT 83 (227)
T ss_pred CCCCEEEEECCCCCC------------C-------HHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 678999886533222 1 1245556666667778888876544
No 235
>PRK11539 ComEC family competence protein; Provisional
Probab=27.64 E-value=2.2e+02 Score=27.22 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=27.6
Q ss_pred ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCC
Q 026021 33 TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDAC 86 (244)
Q Consensus 33 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 86 (244)
+.++...++=|..+......++ .-+|+++||+.|.++..
T Consensus 657 ~~dvL~vpHHGS~tSss~~fl~---------------~v~P~~aiiS~g~~Nry 695 (755)
T PRK11539 657 AATLLQVPHHGSNTSSSLPFIR---------------AVNGKVALASASRYNAW 695 (755)
T ss_pred CCCEEEeCCCCCCCCChHHHHH---------------hcCCCEEEEeCCCCCCC
Confidence 3678888887765554433344 48999999999987653
No 236
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.50 E-value=3.6e+02 Score=22.42 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=16.7
Q ss_pred ccccccccCChhHHHHHHHHHHHHH
Q 026021 189 AYLSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 189 ~~~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
.+..+|--+..+|..--|+.|....
T Consensus 184 vls~~Gg~~~vaG~~t~ad~iI~lA 208 (300)
T COG4558 184 VLSHGGGAPLVAGKGTAADAIIELA 208 (300)
T ss_pred EEecCCCceEeecCCccHHHHHHhc
Confidence 3556677777777777777776643
No 237
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=27.47 E-value=3.6e+02 Score=23.44 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=32.0
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...+|+|.|-+-++|... ...++++|.+.++++++.+ +.++++.+.
T Consensus 151 ~~~aD~Ialr~~S~DP~~-------~d~~~~e~a~~vk~V~~av-----~vPLIL~gs 196 (389)
T TIGR00381 151 EFGADMVTIHLISTDPKL-------DDKSPSEAAKVLEDVLQAV-----DVPIVIGGS 196 (389)
T ss_pred HhCCCEEEEEecCCCccc-------cccCHHHHHHHHHHHHHhC-----CCCEEEeCC
Confidence 489999999998888642 3456777777766655443 455777755
No 238
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=27.26 E-value=1.9e+02 Score=24.21 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=37.5
Q ss_pred EEEEcccccccccCCCChHHHHHHhhcc-ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEec
Q 026021 5 IYLFGDSITESSFTYGGWGASLAHHFSR-TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFG 81 (244)
Q Consensus 5 il~iGDSit~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G 81 (244)
|+++||++. .|-..+.-...|...+.. .+.+...++-......+...+.+... ...|+||..-|
T Consensus 160 Iltvsde~~-~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~------------~~~DlIITTGG 224 (312)
T PRK03604 160 VLVLSDSIA-AGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIA------------EGYALIITTGG 224 (312)
T ss_pred EEEECCcCC-CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhh------------CCCCEEEECCC
Confidence 899999998 554333323333333321 15666667666666655555554433 46788887744
No 239
>PRK08506 replicative DNA helicase; Provisional
Probab=27.20 E-value=2.4e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCeeechhHh
Q 026021 152 NEAAGAYAKACIEVAGECGLPVVDLWTKM 180 (244)
Q Consensus 152 ~~~~~~~~~~~~~~a~~~~v~~iD~~~~~ 180 (244)
...+......++.+|++.+++++=+-+..
T Consensus 324 ~~ev~~isr~LK~lAkel~ipVi~lsQLn 352 (472)
T PRK08506 324 HLQISEISRGLKLLARELDIPIIALSQLN 352 (472)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecC
Confidence 34567788999999999999998665543
No 240
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=27.13 E-value=2.5e+02 Score=21.00 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEEcC------CCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHh
Q 026021 99 LHEYKHNLHSIVSFLKNRWPNTLVLLITP------PPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGE 168 (244)
Q Consensus 99 ~~~~~~~l~~~v~~~~~~~p~~~vil~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 168 (244)
.+.....+.++++.+++.. ..+++++. .|.+...+ ...+....+|+.+.+.|++
T Consensus 96 ~~~~~~~i~~~l~~l~~~~--~~lViVsnEVG~GiVP~~~~~R--------------~yrd~lG~lnq~lA~~Ad~ 155 (167)
T PF02283_consen 96 EEDILEEIERLLEALRERN--ADLVIVSNEVGWGIVPMDPLTR--------------RYRDLLGRLNQRLAARADE 155 (167)
T ss_dssp HHHHHHHHHHHHHHHHH----SEEEEEEE---SS---SSHHHH--------------HHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHccC--CCEEEEEcCCCCCCCCCCHHHH--------------HHHHHHHHHHHHHHHHcCE
Confidence 3567778889999998863 45666643 34433322 3446677778888777765
No 241
>PTZ00117 malate dehydrogenase; Provisional
Probab=27.04 E-value=1.9e+02 Score=24.13 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=33.3
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHH---HHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYK---HNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|.-... .....+.+. .-++++++.+.+..|++.+++++.|
T Consensus 71 l~~ADiVVitag~~~~~--------g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 71 IKDSDVVVITAGVQRKE--------EMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred hCCCCEEEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 46789999999753221 111233333 4567888888888899877777655
No 242
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=27.00 E-value=2.8e+02 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeechhHhh
Q 026021 153 EAAGAYAKACIEVAGECGLPVVDLWTKMQ 181 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~iD~~~~~~ 181 (244)
..+..+...++++|++++++++=+.+...
T Consensus 146 ~~~~~~~~~L~~la~~~~~~ii~~~q~~r 174 (242)
T cd00984 146 QEVAEISRSLKLLAKELNVPVIALSQLSR 174 (242)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEecccCh
Confidence 45678889999999999999887765543
No 243
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=26.81 E-value=3.8e+02 Score=22.45 Aligned_cols=109 Identities=22% Similarity=0.279 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHHHHHhhCCCc-eEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCee--
Q 026021 98 PLHEYKHNLHSIVSFLKNRWPNT-LVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVV-- 174 (244)
Q Consensus 98 ~~~~~~~~l~~~v~~~~~~~p~~-~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~i-- 174 (244)
..+..+++++-+++.++.++-.. -+++.+||-.+...... -+|.+.|+.+-
T Consensus 30 GQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~--------------------------IIA~Emgvn~k~t 83 (332)
T COG2255 30 GQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAH--------------------------IIANELGVNLKIT 83 (332)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHH--------------------------HHHHHhcCCeEec
Confidence 45667889999999999885222 46666777776553211 13445555442
Q ss_pred ---------echhHhhhhhhccccccccccc-CChhHHHHHHHHHHHHHhhc----CCCCCCCCCCCCCCCCC
Q 026021 175 ---------DLWTKMQQLADWKTAYLSDGLH-LNETGNRVVFEEVVMKLKTE----GLSLENLPVDLPMISEI 233 (244)
Q Consensus 175 ---------D~~~~~~~~~~~~~~~~~DgiH-pn~~G~~~~a~~l~~~l~~~----~~~~~~~~~~~p~~~~~ 233 (244)
|+-+.+..-. ....++.|-+| .++.-.+.+.-++.++-... +.......-.+|+|.=+
T Consensus 84 sGp~leK~gDlaaiLt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 84 SGPALEKPGDLAAILTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred ccccccChhhHHHHHhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2222222111 12367788888 35555556555555542222 44555677778887644
No 244
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.73 E-value=3.6e+02 Score=22.92 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=22.2
Q ss_pred cEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 74 IAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 74 d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
=.||+++|.|=..- ...+.++...+++.+. +|++...
T Consensus 139 p~Vil~vGVNG~GK---------------TTTIaKLA~~l~~~g~--~VllaA~ 175 (340)
T COG0552 139 PFVILFVGVNGVGK---------------TTTIAKLAKYLKQQGK--SVLLAAG 175 (340)
T ss_pred cEEEEEEecCCCch---------------HhHHHHHHHHHHHCCC--eEEEEec
Confidence 47888999998842 2344555555555532 3555544
No 245
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=26.73 E-value=38 Score=27.02 Aligned_cols=13 Identities=31% Similarity=1.014 Sum_probs=12.1
Q ss_pred CCCeEEEEccccc
Q 026021 1 MRPKIYLFGDSIT 13 (244)
Q Consensus 1 ~~~~il~iGDSit 13 (244)
|||-|+|+||++-
T Consensus 221 lKpdV~fFGdnvn 233 (305)
T KOG2683|consen 221 LKPDVTFFGDNVN 233 (305)
T ss_pred cCCceEEecCCCC
Confidence 7899999999998
No 246
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=26.70 E-value=50 Score=26.59 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=12.4
Q ss_pred CCeEEEEcccccccccC
Q 026021 2 RPKIYLFGDSITESSFT 18 (244)
Q Consensus 2 ~~~il~iGDSit~~g~~ 18 (244)
|+.|+++|||+...++.
T Consensus 179 R~NvlLlGDslgD~~Ma 195 (246)
T PF05822_consen 179 RTNVLLLGDSLGDLHMA 195 (246)
T ss_dssp --EEEEEESSSGGGGTT
T ss_pred CCcEEEecCccCChHhh
Confidence 46799999999966553
No 247
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.68 E-value=1.3e+02 Score=24.47 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=27.2
Q ss_pred EEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 75 AVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 75 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
+|++.+|+--.. .....+..+.+.+++++|+..|.+.-...
T Consensus 3 IllvsFGTs~~~--------------ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 3 ILLVSFGTSYPE--------------AREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEE---S-CC--------------CCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEeCCCCCHH--------------HHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 577888864331 11458899999999999999999986643
No 248
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=26.68 E-value=3e+02 Score=21.22 Aligned_cols=41 Identities=10% Similarity=-0.139 Sum_probs=25.1
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..||+|++-+..-|. + --++++.+++..+.++|++++...-
T Consensus 49 ~~pdlvllD~~mp~~------------~-------gle~~~~l~~~~~~~~iivls~~~~ 89 (225)
T PRK10046 49 FKPGLILLDNYLPDG------------R-------GINLLHELVQAHYPGDVVFTTAASD 89 (225)
T ss_pred cCCCEEEEeCCCCCC------------c-------HHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 779999885533222 1 1235555666666678888876544
No 249
>PRK03673 hypothetical protein; Provisional
Probab=26.66 E-value=1.9e+02 Score=25.24 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=42.0
Q ss_pred CCCeEEEEcccccccccCCC---ChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEE
Q 026021 1 MRPKIYLFGDSITESSFTYG---GWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVA 77 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~---~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vi 77 (244)
||-.|+.+||-+. .|...+ .|-...-..++ +.+.....-+.....+...+.... .+.|+||
T Consensus 2 ~~v~Iis~GdEll-~G~i~dtN~~~la~~L~~~G--~~v~~~~~v~D~~~~i~~~l~~a~-------------~~~DlVI 65 (396)
T PRK03673 2 LRVEMLSTGDEVL-HGQIVDTNAAWLADFFFHQG--LPLSRRNTVGDNLDALVAILRERS-------------QHADVLI 65 (396)
T ss_pred CEEEEEEecccCC-CCeEEEhHHHHHHHHHHHCC--CEEEEEEEcCCCHHHHHHHHHHHh-------------ccCCEEE
Confidence 5557999999998 554322 24333333344 667777777877766655555432 5679998
Q ss_pred EEecc
Q 026021 78 VFFGA 82 (244)
Q Consensus 78 i~~G~ 82 (244)
+.-|.
T Consensus 66 ~tGGl 70 (396)
T PRK03673 66 VNGGL 70 (396)
T ss_pred EcCCC
Confidence 88664
No 250
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=26.46 E-value=2.1e+02 Score=23.74 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhC-CCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeee
Q 026021 104 HNLHSIVSFLKNRW-PNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVD 175 (244)
Q Consensus 104 ~~l~~~v~~~~~~~-p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD 175 (244)
+.|.+.++.+.+.. ....+.++|.+.-..... .=...+.++|++++|+++=
T Consensus 140 e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---------------------~Dakkva~ic~e~gvPlll 191 (382)
T COG1103 140 EGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---------------------ADAKKVAKICREYGVPLLL 191 (382)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---------------------hhhHHHHHHHHHcCCceEe
Confidence 44555666666663 335577777765432211 1125677899999999753
No 251
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=26.17 E-value=1.5e+02 Score=24.00 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|||.|+++|+++-. ..|... .+.+..---++..|-|.....- ..+..... .....+|+|..
T Consensus 179 lrP~VV~FGE~lp~-----~~~~~a-~~~~~~aDlllviGTSl~V~pa--~~l~~~a~-----------~~g~~viiIN~ 239 (260)
T cd01409 179 LKPDVVFFGENVPR-----DRVVTA-AARLAEADALLVLGSSLMVYSG--YRFVLAAA-----------EAGLPIAIVNI 239 (260)
T ss_pred ECCCEEECCCCCCH-----HHHHHH-HHHHhcCCEEEEeCcCceecch--hhHHHHHH-----------HCCCcEEEEcC
Confidence 58999999999882 123322 3333221246677877765431 12222222 24566777777
Q ss_pred ccCCC
Q 026021 81 GANDA 85 (244)
Q Consensus 81 G~ND~ 85 (244)
+....
T Consensus 240 ~~t~~ 244 (260)
T cd01409 240 GPTRA 244 (260)
T ss_pred CCCCC
Confidence 64443
No 252
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=25.88 E-value=2.9e+02 Score=20.74 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=24.4
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.+|+.+-.+|. +.|..--...+..+++..+++++++++.
T Consensus 73 ~~a~~~ilvydit~~--------------~Sf~~~~~~w~~~i~~~~~~~piilvgN 115 (191)
T cd01875 73 PQTNVFIICFSIASP--------------SSYENVRHKWHPEVCHHCPNVPILLVGT 115 (191)
T ss_pred cCCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 567888888754443 2332222234455555556777887765
No 253
>PLN02674 adenylate kinase
Probab=25.82 E-value=3.2e+02 Score=22.00 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=11.5
Q ss_pred CceEEEEcCCCCChhh
Q 026021 119 NTLVLLITPPPIDEEA 134 (244)
Q Consensus 119 ~~~vil~~~~~~~~~~ 134 (244)
..+|+++++|-.+...
T Consensus 31 ~~~i~l~G~PGsGKgT 46 (244)
T PLN02674 31 DKRLILIGPPGSGKGT 46 (244)
T ss_pred CceEEEECCCCCCHHH
Confidence 4568888888777653
No 254
>PRK00865 glutamate racemase; Provisional
Probab=25.74 E-value=3.6e+02 Score=21.76 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=44.6
Q ss_pred ccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 026021 33 TVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSF 112 (244)
Q Consensus 33 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 112 (244)
.+.++..|++|.|.- ..+.+.++ +.=+|.+|-|--... +.-+.++......++++.
T Consensus 7 ~IgvfDSGiGGLtvl---~~i~~~lp---------------~~~~iY~~D~~~~PY------G~ks~~~i~~~~~~~~~~ 62 (261)
T PRK00865 7 PIGVFDSGVGGLTVL---REIRRLLP---------------DEHIIYVGDTARFPY------GEKSEEEIRERTLEIVEF 62 (261)
T ss_pred eEEEEECCccHHHHH---HHHHHHCC---------------CCCEEEEecCCCCCC------CCCCHHHHHHHHHHHHHH
Confidence 367889999996663 23333333 223456664443321 345788889999999999
Q ss_pred HHhhCCCceEEEEcCC
Q 026021 113 LKNRWPNTLVLLITPP 128 (244)
Q Consensus 113 ~~~~~p~~~vil~~~~ 128 (244)
+.+.+ ++.+++...
T Consensus 63 L~~~g--~d~iVIaCN 76 (261)
T PRK00865 63 LLEYG--VKMLVIACN 76 (261)
T ss_pred HHhCC--CCEEEEeCc
Confidence 99864 556666654
No 255
>PRK15076 alpha-galactosidase; Provisional
Probab=25.50 E-value=2e+02 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 100 HEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 100 ~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
.+-..-+.++++.+++..|++-++.+|.|
T Consensus 121 ~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 121 LRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred hhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 44455788999999999999877777776
No 256
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.50 E-value=2.9e+02 Score=20.63 Aligned_cols=55 Identities=9% Similarity=-0.012 Sum_probs=30.9
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....++.+....+.............. .+...+.++..++.++..+ ++.+++.+.
T Consensus 39 ~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg--~~~i~~~~g 93 (213)
T PF01261_consen 39 YGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLG--AKYIVVHSG 93 (213)
T ss_dssp TTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHT--BSEEEEECT
T ss_pred cCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhC--CCceeecCc
Confidence 555555555555544321100001112 5677889999999999984 556666654
No 257
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=25.48 E-value=3e+02 Score=23.98 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeechhHhh
Q 026021 153 EAAGAYAKACIEVAGECGLPVVDLWTKMQ 181 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~iD~~~~~~ 181 (244)
..+..+...++.+|++++++++=+.+...
T Consensus 327 ~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr 355 (421)
T TIGR03600 327 EELGGISRGLKALAKELDVPVVLLAQLNR 355 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEecccCc
Confidence 56778889999999999999988776544
No 258
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=25.32 E-value=2.9e+02 Score=20.61 Aligned_cols=42 Identities=14% Similarity=-0.004 Sum_probs=26.3
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPID 131 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~ 131 (244)
..||+|++.+...+.. . ..+++.+++..|.+++++++...-.
T Consensus 43 ~~~dlvild~~l~~~~------------g-------~~~~~~i~~~~~~~~ii~lt~~~~~ 84 (219)
T PRK10336 43 APYDAVILDLTLPGMD------------G-------RDILREWREKGQREPVLILTARDAL 84 (219)
T ss_pred CCCCEEEEECCCCCCC------------H-------HHHHHHHHhcCCCCcEEEEECCCCH
Confidence 6789998876443321 1 2345556666677888888865443
No 259
>PHA02542 41 41 helicase; Provisional
Probab=25.28 E-value=3.1e+02 Score=24.49 Aligned_cols=31 Identities=16% Similarity=-0.036 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCeeechhHhhh
Q 026021 152 NEAAGAYAKACIEVAGECGLPVVDLWTKMQQ 182 (244)
Q Consensus 152 ~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~ 182 (244)
...+......++.+|++.+|++|=+-+.-..
T Consensus 326 ~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~ 356 (473)
T PHA02542 326 YTYVKAIAEELRGLAVEHDVVVWTAAQTTRS 356 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEeeCcc
Confidence 4568889999999999999999877665443
No 260
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=25.23 E-value=3.1e+02 Score=20.86 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCCeeech
Q 026021 160 KACIEVAGECGLPVVDLW 177 (244)
Q Consensus 160 ~~~~~~a~~~~v~~iD~~ 177 (244)
+..+++|++.++.|+.+-
T Consensus 160 ~e~~~~a~~~~~~~~E~S 177 (195)
T cd01873 160 ETGRAVAKELGIPYYETS 177 (195)
T ss_pred HHHHHHHHHhCCEEEEcC
Confidence 445678888888887663
No 261
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=25.20 E-value=2.5e+02 Score=20.98 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCceEEEEcC------CCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHh
Q 026021 100 HEYKHNLHSIVSFLKNRWPNTLVLLITP------PPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGE 168 (244)
Q Consensus 100 ~~~~~~l~~~v~~~~~~~p~~~vil~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 168 (244)
+.++..+.++++.+++.. +.+++++. .|.+... ....+.+..+|+.+.+.|++
T Consensus 99 ~~~~~~l~~li~~L~~~~--~tvVlVs~Evg~g~vp~~~~~--------------r~~~d~lG~lnq~la~~ad~ 157 (170)
T PRK05800 99 EAIAAEIDALLAALQQLP--AKIILVTNEVGMGIVPEYRLG--------------RHFRDIAGRLNQQLAAAADE 157 (170)
T ss_pred HHHHHHHHHHHHHHHcCC--CCEEEEEcCCcccccCCCHHH--------------HHHHHHHHHHHHHHHHHCCE
Confidence 446777888888888863 34555542 2222221 13446667778877777664
No 262
>PRK10494 hypothetical protein; Provisional
Probab=25.15 E-value=3.7e+02 Score=21.75 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
.+.+.+.++..++. |.++|++.+..
T Consensus 106 ~~Rl~~a~~L~r~~-~~~~ii~SGg~ 130 (259)
T PRK10494 106 LPRLTEGIRLWRAN-PGAKLIFTGGA 130 (259)
T ss_pred HHHHHHHHHHHHhC-CCCEEEEECCC
Confidence 36677777777764 67778887754
No 263
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=25.10 E-value=2.5e+02 Score=19.75 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCCeeechhH
Q 026021 157 AYAKACIEVAGECGLPVVDLWTK 179 (244)
Q Consensus 157 ~~~~~~~~~a~~~~v~~iD~~~~ 179 (244)
...+.+++++++.+++++-....
T Consensus 26 ~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 26 GAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp TCHHHHHHHHHHHTSEEEEEGGG
T ss_pred hHHHHHHHHHHHHCCCEEecCcc
Confidence 34578889999999999887643
No 264
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=25.09 E-value=3.8e+02 Score=21.80 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=59.6
Q ss_pred ChhHHHHHHHHHHHHHHhhCCCceEEEEcCCC---CChhhhhcCC--CCCCC-----CCCCccchHHHHHHHHHHHHHHH
Q 026021 98 PLHEYKHNLHSIVSFLKNRWPNTLVLLITPPP---IDEEARLKHP--YVENP-----TGLPERTNEAAGAYAKACIEVAG 167 (244)
Q Consensus 98 ~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~---~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~ 167 (244)
..+.+.+.++++-+.+++..|++ |+++++-. +.......+. .+... .+.+......-..+.+.+.+.+.
T Consensus 23 ~~~~~~~al~~~~~~l~~~~Pd~-ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~~gd~~LA~~i~~~l~ 101 (268)
T cd07367 23 QAARVVQGMAEIGRRVRESRPDV-LVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRELFPGHREFARAFVRQAA 101 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCE-EEEEeCchhhhcccccCCceEEeeccccccCCcCCCCcccCCCCHHHHHHHHHHHH
Confidence 35677888888888887766775 44444411 1100011110 01110 11122222334567788888888
Q ss_pred hcCCCeeechhHhhhhhhccc-------------cccccccc---CChhHHHHHHHHHHHHHhh
Q 026021 168 ECGLPVVDLWTKMQQLADWKT-------------AYLSDGLH---LNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 168 ~~~v~~iD~~~~~~~~~~~~~-------------~~~~DgiH---pn~~G~~~~a~~l~~~l~~ 215 (244)
+.+++.......-.+++-+.. .......+ |+.+-+..++++|.+.+.+
T Consensus 102 ~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~i~~ 165 (268)
T cd07367 102 EDGFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQYVEK 165 (268)
T ss_pred HcCCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 888876443221111211100 01122333 4788888999999999876
No 265
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=24.98 E-value=1e+02 Score=25.62 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=28.4
Q ss_pred EEeccCCCCCC----CCCCCC----cccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 78 VFFGANDACLP----DRCGAF----QHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 78 i~~G~ND~~~~----~~~~~~----~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
+++|+||+... +..+.. ...--..+..-++++++.+++++ .+|-+++-
T Consensus 201 ~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g--~~vsvCGe 256 (293)
T PF02896_consen 201 FSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAG--KPVSVCGE 256 (293)
T ss_dssp EEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT---EEEEESG
T ss_pred EEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcC--cEEEEecC
Confidence 48899998321 111110 11123467788999999999874 56777765
No 266
>PRK12465 xylose isomerase; Provisional
Probab=24.96 E-value=4.8e+02 Score=22.99 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=33.4
Q ss_pred EEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCC
Q 026021 78 VFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRW--PNTLVLLITPPPID 131 (244)
Q Consensus 78 i~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~--p~~~vil~~~~~~~ 131 (244)
+++=-+|+.. ...+..++.++++++++.++++. -+.++++.|+.-+.
T Consensus 106 ~~FHD~D~~P-------eg~s~~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs 154 (445)
T PRK12465 106 YCFHDIDLAP-------DADDIGEYESNLKHMVGIAKQRQADTGIKLLWGTANLFS 154 (445)
T ss_pred eeccccccCC-------CCCCHHHHHHHHHHHHHHHHHHhhhhCceeeeecccccc
Confidence 3454566642 34578899999999999998863 46778888776543
No 267
>cd07180 RNaseH_typeII_Archaea_like Archaeal ribonuclease HII. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair. Some archaeal RNase HII show broad divalent cation specificity. It is proposed that three of the four acidic residues at the active site are involved in metal binding and the fourth one involved in the catalytic process in archaea. Most archaeal genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. It appears tha
Probab=24.85 E-value=3.3e+02 Score=21.06 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccch-HHHHHHHHHHHHHHHhcCCCeeechhHh--
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTN-EAAGAYAKACIEVAGECGLPVVDLWTKM-- 180 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~v~~iD~~~~~-- 180 (244)
...+.+.+.+++..-...+.++++..++.... . ...+ .....+.+++.++.......++|-+...
T Consensus 44 ~~r~~l~~~I~~~~~~~~i~~i~~~~id~~~~-~-----------~nln~~~~~~~~~~i~~l~~~~~~iliD~~~~~~~ 111 (204)
T cd07180 44 KKREELYNEILKVADDVVIVIVSPEEIDERRE-A-----------HNLNELEAEAFAELINRLSDKPDIVYVDACDVNEE 111 (204)
T ss_pred HHHHHHHHHHHhcCCeEEEEEECHHHhChhhh-h-----------cCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCCCHH
Confidence 34455666665532234566666655543311 0 0112 2333455566555433344578887321
Q ss_pred --hh---h-----hhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 181 --QQ---L-----ADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 181 --~~---~-----~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
.. . .........|..||+-+..-++|+.....+.+
T Consensus 112 ~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAaASIlAKv~Rd~~m~ 156 (204)
T cd07180 112 RFAEELRERLNSGVEVIAEHKADAKYPVVSAASIIAKVERDREIE 156 (204)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCcccCchhhHHHHHHHHHHHHHHH
Confidence 11 0 01112245788999999999999766555444
No 268
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=24.83 E-value=4.3e+02 Score=22.40 Aligned_cols=61 Identities=10% Similarity=-0.005 Sum_probs=39.8
Q ss_pred EeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhh
Q 026021 37 VLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNR 116 (244)
Q Consensus 37 ~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~ 116 (244)
+|.|.++.+....+++++..-.- ..-.|+++|.+..=. .++.+.-+++..+++++.+..+.
T Consensus 183 Vnlgknk~s~d~~~dy~~gV~~~----------g~~adylviNvSsPN---------tpGlr~lq~k~~L~~ll~~v~~a 243 (398)
T KOG1436|consen 183 VNLGKNKTSEDAILDYVEGVRVF----------GPFADYLVINVSSPN---------TPGLRSLQKKSDLRKLLTKVVQA 243 (398)
T ss_pred eeeccccCCcchHHHHHHHhhhc----------ccccceEEEeccCCC---------CcchhhhhhHHHHHHHHHHHHHH
Confidence 78888887766655555544332 367789998875322 23445667777888887776654
No 269
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=24.79 E-value=1.5e+02 Score=28.90 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 101 EYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...+-++..++..++..|+.+|-+++-
T Consensus 808 aV~~Li~~~v~~~r~~~~~~~vgICGE 834 (879)
T PRK09279 808 GVGELVEIAVERGRATRPDLKLGICGE 834 (879)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 455566666666676667888888754
No 270
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=24.69 E-value=91 Score=25.45 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=31.7
Q ss_pred ccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCC
Q 026021 73 TIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWP 118 (244)
Q Consensus 73 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p 118 (244)
+.+-.|++|.+|+...-. ......-.++.+.++++++.+++++.
T Consensus 168 ~gvd~i~~G~~Dls~slg--~~~~~~~pev~~ai~~v~~a~~~~Gk 211 (267)
T PRK10128 168 EGIDGVFIGPADLSASLG--YPDNAGHPEVQRIIETSIRRIRAAGK 211 (267)
T ss_pred CCCCEEEECHHHHHHHcC--CCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 567778999999854221 11233456789999999999999864
No 271
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.51 E-value=1.9e+02 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhcCCCeeechh
Q 026021 154 AAGAYAKACIEVAGECGLPVVDLWT 178 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~~iD~~~ 178 (244)
.+...|+..+++.+.+|+.++|...
T Consensus 127 Y~~evn~~e~ef~~~~Gfeiv~~~~ 151 (238)
T COG3473 127 YIDEVNQREIEFLEANGFEIVDFKG 151 (238)
T ss_pred chhhhhhHHHHHHHhCCeEEEEeec
Confidence 5678889999999999999999744
No 272
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=24.45 E-value=5.1e+02 Score=23.11 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=38.6
Q ss_pred ccChhHHHHHHHHHHHHHHhhCCCceEEEEcC-CCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCee
Q 026021 96 HVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP-PPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVV 174 (244)
Q Consensus 96 ~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~i 174 (244)
..+-+.|.+.-++.|+++++.++ .-|+++.. -|.... ..+...++.++++++++
T Consensus 159 dipRe~Y~eAEervI~ELk~igK-PFvillNs~~P~s~e------------------------t~~L~~eL~ekY~vpVl 213 (492)
T PF09547_consen 159 DIPRENYVEAEERVIEELKEIGK-PFVILLNSTKPYSEE------------------------TQELAEELEEKYDVPVL 213 (492)
T ss_pred CCChHHHHHHHHHHHHHHHHhCC-CEEEEEeCCCCCCHH------------------------HHHHHHHHHHHhCCcEE
Confidence 45778999999999999999974 44555544 333322 22344455667788876
Q ss_pred echhH
Q 026021 175 DLWTK 179 (244)
Q Consensus 175 D~~~~ 179 (244)
.+...
T Consensus 214 pvnc~ 218 (492)
T PF09547_consen 214 PVNCE 218 (492)
T ss_pred EeehH
Confidence 65443
No 273
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=24.39 E-value=2.3e+02 Score=23.72 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=32.4
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcc-cChhHH---HHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQH-VPLHEY---KHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~-~~~~~~---~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....|+||+..|...-. .. .... ...+.+ ..-++++++.+.+..|++.+++++.|
T Consensus 72 l~~aDiVI~tag~~~~~--~~--~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 72 IAGSDVVIVTAGLTKRP--GK--SDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred hCCCCEEEECCCCCCCC--CC--CcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46789999998864321 00 0000 112222 34567777788888898877777754
No 274
>PRK14531 adenylate kinase; Provisional
Probab=24.17 E-value=79 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=20.4
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhc
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFS 31 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~ 31 (244)
||.+|+++|-+-+ + -......|++.++
T Consensus 1 ~~~~i~i~G~pGs-G---KsT~~~~la~~~g 27 (183)
T PRK14531 1 MKQRLLFLGPPGA-G---KGTQAARLCAAHG 27 (183)
T ss_pred CCcEEEEECCCCC-C---HHHHHHHHHHHhC
Confidence 8899999998877 2 2356777777775
No 275
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=24.16 E-value=2.5e+02 Score=20.32 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.+++.+-.+|. +.|.......+..+++..++.+++++..
T Consensus 68 ~~~d~~ilv~d~~~~--------------~s~~~~~~~~~~~i~~~~~~~piilv~n 110 (174)
T smart00174 68 PDTDVFLICFSVDSP--------------ASFENVKEKWYPEVKHFCPNTPIILVGT 110 (174)
T ss_pred CCCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 456888887754433 3343333445666666667777888766
No 276
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.96 E-value=2.5e+02 Score=19.30 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPID 131 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~ 131 (244)
...+.+.++.++++ +++++.++..+-+
T Consensus 60 t~~~~~~~~~a~~~--g~~vi~iT~~~~s 86 (128)
T cd05014 60 TDELLNLLPHLKRR--GAPIIAITGNPNS 86 (128)
T ss_pred CHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 45677788888887 5779998886543
No 277
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=23.82 E-value=1.8e+02 Score=22.70 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=37.0
Q ss_pred CCCeEEEEcccccccccCCCChHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 1 MRPKIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 1 ~~~~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
|||.|+++|+++- . . |.......-. .--++..|-+..... ...+.+... .....+|+|..
T Consensus 143 lrP~Vv~fgE~~p-~----~-~~~a~~~~~~-~Dl~lvlGTSl~V~p--~~~l~~~~~-----------~~~~~~i~iN~ 202 (218)
T cd01407 143 LRPDVVFFGESLP-E----E-LDEAAEALAK-ADLLLVIGTSLQVYP--AAGLPLYAP-----------ERGAPVVIINL 202 (218)
T ss_pred cCCCeEECCCCCc-H----H-HHHHHHHHhc-CCEEEEeCCCccccc--HHHHHHHHH-----------HCCCeEEEECC
Confidence 6899999999987 2 2 5444433333 233677786665442 223333333 25667777777
Q ss_pred ccCCC
Q 026021 81 GANDA 85 (244)
Q Consensus 81 G~ND~ 85 (244)
+..+.
T Consensus 203 ~~~~~ 207 (218)
T cd01407 203 EPTPA 207 (218)
T ss_pred CCCCC
Confidence 65444
No 278
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=23.76 E-value=3.6e+02 Score=21.10 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..+.+.++.++.+ ..+|+|++|.+.
T Consensus 166 ~~~~~~l~~l~~r--~~rviwLnP~~~ 190 (222)
T PF05762_consen 166 EPLAEELRRLRRR--GRRVIWLNPLPR 190 (222)
T ss_pred HHHHHHHHHHHHh--CCEEEEECCccc
Confidence 3445556666665 456999998643
No 279
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=23.76 E-value=2.6e+02 Score=23.12 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
...+.+.|+.+|+.+|.+.|-+++|-..
T Consensus 132 A~hfa~~i~~Ire~~P~t~iEvL~PDF~ 159 (306)
T COG0320 132 AQHFAECIRAIRELNPQTTIEVLTPDFR 159 (306)
T ss_pred hHHHHHHHHHHHhhCCCceEEEeCcccc
Confidence 6678888999999999999988876443
No 280
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=23.75 E-value=3.7e+02 Score=22.03 Aligned_cols=117 Identities=5% Similarity=-0.071 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC--ChhhhhcCC--CCCCCC----CCC---ccchHHHHHHHHHHHHHHH
Q 026021 99 LHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI--DEEARLKHP--YVENPT----GLP---ERTNEAAGAYAKACIEVAG 167 (244)
Q Consensus 99 ~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~--~~~~~~~~~--~~~~~~----~~~---~~~~~~~~~~~~~~~~~a~ 167 (244)
.+...+.++++-+.+++..|++-|++.+.... .......+. .+.... ... ......-..+.+.+.+.+.
T Consensus 30 ~~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~ 109 (277)
T cd07364 30 WKPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLI 109 (277)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 56778889999999988888864444232211 110011111 111111 000 0012234567777888888
Q ss_pred hcCCCeeechhHhhhhhhccc--ccc--------------ccccc---CChhHHHHHHHHHHHHHhh
Q 026021 168 ECGLPVVDLWTKMQQLADWKT--AYL--------------SDGLH---LNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 168 ~~~v~~iD~~~~~~~~~~~~~--~~~--------------~DgiH---pn~~G~~~~a~~l~~~l~~ 215 (244)
+.++.+.-....-.+++-+.. .+. ...+. |+.+-+..++++|.+.+++
T Consensus 110 ~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~ 176 (277)
T cd07364 110 LDDFDMTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVES 176 (277)
T ss_pred HcCCCEEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 888876433222111221111 111 12222 5778889999999999875
No 281
>PRK05474 xylose isomerase; Provisional
Probab=23.61 E-value=5.2e+02 Score=22.87 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=28.4
Q ss_pred cccChhHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCC
Q 026021 95 QHVPLHEYKHNLHSIVSFLKNRW--PNTLVLLITPPPID 131 (244)
Q Consensus 95 ~~~~~~~~~~~l~~~v~~~~~~~--p~~~vil~~~~~~~ 131 (244)
...+..++..+++++++.++++. -+.++++.|..-++
T Consensus 106 eg~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs 144 (437)
T PRK05474 106 EGASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFS 144 (437)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccC
Confidence 34578899999999999998873 46678888776553
No 282
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.57 E-value=1.6e+02 Score=23.73 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred cccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCC
Q 026021 68 RERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGL 147 (244)
Q Consensus 68 ~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
+....+|.|=+++-.-|. ....++.-.+...++++.+.+.+ +..|.+.-...+++|+|+.....
T Consensus 27 AK~~GFDFvEmSvDEsDe---------RLaRLDWs~~er~~l~~ai~etg-------v~ipSmClSaHRRfPfGS~D~~~ 90 (287)
T COG3623 27 AKELGFDFVEMSVDESDE---------RLARLDWSKEERLALVNAIQETG-------VRIPSMCLSAHRRFPFGSKDEAT 90 (287)
T ss_pred HHHcCCCeEEEeccchHH---------HHHhcCCCHHHHHHHHHHHHHhC-------CCccchhhhhhccCCCCCCCHHH
Q ss_pred CccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 148 PERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
..+..+.+ +...++|+..|+..|.+
T Consensus 91 r~~aleiM----~KaI~LA~dLGIRtIQL 115 (287)
T COG3623 91 RQQALEIM----EKAIQLAQDLGIRTIQL 115 (287)
T ss_pred HHHHHHHH----HHHHHHHHHhCceeEee
No 283
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.53 E-value=63 Score=26.36 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.8
Q ss_pred ccccccCChhHHHHHHHHHHHHH
Q 026021 191 LSDGLHLNETGNRVVFEEVVMKL 213 (244)
Q Consensus 191 ~~DgiHpn~~G~~~~a~~l~~~l 213 (244)
..||+|+-.-+...++..+++.|
T Consensus 249 g~~GiHl~t~n~~~~~~~il~~l 271 (272)
T TIGR00676 249 GVPGIHFYTLNRADATLEICENL 271 (272)
T ss_pred CCCEEEEcCCCCHHHHHHHHHhh
Confidence 37899998888888888887765
No 284
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=23.27 E-value=2.1e+02 Score=19.59 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 100 HEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 100 ~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
+.+..-++.++++++++.|++++.+++..
T Consensus 15 k~~~~li~~~~~~l~~~~p~~~l~i~G~~ 43 (135)
T PF13692_consen 15 KGLEELIEAALERLKEKHPDIELIIIGNG 43 (135)
T ss_dssp GTHHHHHH-HHHHHHHHSTTEEEEEECES
T ss_pred ccccchhhhHHHHHHHHCcCEEEEEEeCC
Confidence 34444455577888888899999998874
No 285
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=23.23 E-value=1.2e+02 Score=20.05 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCee
Q 026021 108 SIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVV 174 (244)
Q Consensus 108 ~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~i 174 (244)
++++.+++. +..+++.++.+...... .-...+++.|.+++++++
T Consensus 51 ~i~~~i~~~--~IdlVIn~~~~~~~~~~---------------------~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNG--KIDLVINTPYPFSDQEH---------------------TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTT--SEEEEEEE--THHHHHT---------------------HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcC--CeEEEEEeCCCCccccc---------------------CCcHHHHHHHHHcCCCCc
Confidence 677788776 56677777754432211 245778889999998875
No 286
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=23.18 E-value=3.8e+02 Score=22.18 Aligned_cols=16 Identities=0% Similarity=-0.164 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCCeee
Q 026021 160 KACIEVAGECGLPVVD 175 (244)
Q Consensus 160 ~~~~~~a~~~~v~~iD 175 (244)
+.++++|+++++.++=
T Consensus 106 ~~l~~~a~~~girvlG 121 (291)
T PRK05678 106 LEVKAYLERKKTRLIG 121 (291)
T ss_pred HHHHHHHHHcCCEEEC
Confidence 4677788888777653
No 287
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=23.08 E-value=2.7e+02 Score=20.89 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=27.7
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
..-..|+|.+|+|=- .=.+++++.++.+.+ .++..++.+++.
T Consensus 5 ~~~~~v~i~LGSNlg---------------~~~~~l~~A~~~L~~-~~~~~~~~~S~~ 46 (163)
T PRK14092 5 PASALAYVGLGANLG---------------DAAATLRSVLAELAA-APGILACKASRL 46 (163)
T ss_pred CcCCEEEEEecCchH---------------hHHHHHHHHHHHHHh-CCCCeeEEECCC
Confidence 445678999999832 115678888888877 466666655543
No 288
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=23.05 E-value=2e+02 Score=19.27 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.+++.+-..|. ..-.+...+.+.+..+++..++++++++..
T Consensus 72 ~~~d~~ilv~D~s~~------------~s~~~~~~~~~~l~~~~~~~~~~piilv~n 116 (119)
T PF08477_consen 72 KKADAVILVYDLSDP------------ESLEYLSQLLKWLKNIRKRDKNIPIILVGN 116 (119)
T ss_dssp HHSCEEEEEEECCGH------------HHHHHHHHHHHHHHHHHHHSSCSEEEEEEE
T ss_pred hcCcEEEEEEcCCCh------------HHHHHHHHHHHHHHHHHccCCCCCEEEEEe
Confidence 567888888732222 112223344555666776667788888753
No 289
>COG2403 Predicted GTPase [General function prediction only]
Probab=22.84 E-value=1.7e+02 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEc
Q 026021 101 EYKHNLHSIVSFLKNRWPNTLVLLIT 126 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~p~~~vil~~ 126 (244)
....+++++++.+++.+|++.|+...
T Consensus 281 a~~~kvrkI~~~I~~iNP~A~Vi~~~ 306 (449)
T COG2403 281 AMAEKVRKIVRNIEEINPKAEVILAA 306 (449)
T ss_pred cchHHHHHHHHHHHhhCCCcEEEecc
Confidence 34569999999999999999988873
No 290
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=22.82 E-value=2.1e+02 Score=21.67 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=27.6
Q ss_pred eEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhhhh
Q 026021 121 LVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQLA 184 (244)
Q Consensus 121 ~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~ 184 (244)
.|++++++-.+.. ..-+.+|+..+.+|+|+...+....
T Consensus 4 ~IvLiG~mGaGKS--------------------------TIGr~LAk~L~~~F~D~D~~Ie~~~ 41 (172)
T COG0703 4 NIVLIGFMGAGKS--------------------------TIGRALAKALNLPFIDTDQEIEKRT 41 (172)
T ss_pred cEEEEcCCCCCHh--------------------------HHHHHHHHHcCCCcccchHHHHHHH
Confidence 4888888666544 3345577888999999988876653
No 291
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.80 E-value=42 Score=26.70 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhCCCceEEEEcC
Q 026021 106 LHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 106 l~~~v~~~~~~~p~~~vil~~~ 127 (244)
-+.+++-+++..|...+.++..
T Consensus 269 kd~a~E~~~a~spE~e~~~lnn 290 (315)
T COG4030 269 KDRAFEVLSAVSPETEIYILNN 290 (315)
T ss_pred HHHHHHHHHhhCcccceecccC
Confidence 4555666666667777777764
No 292
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=22.78 E-value=1.9e+02 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
..-++.+++.+++..|++++++++..|
T Consensus 17 eail~all~~l~~~~~~~~~~~~~~~p 43 (385)
T COG2327 17 EAILKALLDMLRRLNPDAKVLVMGRRP 43 (385)
T ss_pred HHHHHHHHHHHHhhCcccceeeeecCC
Confidence 456788999999999999999998854
No 293
>PRK01215 competence damage-inducible protein A; Provisional
Probab=22.68 E-value=2.8e+02 Score=22.61 Aligned_cols=62 Identities=15% Similarity=0.025 Sum_probs=37.8
Q ss_pred eEEEEcccccccccCCCC---hHHHHHHhhccccceEeeccCCcchHHHHHHHHhhccccCCCcccccccCCccEEEEEe
Q 026021 4 KIYLFGDSITESSFTYGG---WGASLAHHFSRTVDVVLRGYSGYNTRWAVKVMERVLPAANGESESERERVSTIAVAVFF 80 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~---~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~vii~~ 80 (244)
-|+.+||-+. .|...+. |....-+.++ +++.....-+.....+...+.+... ..|+||+.-
T Consensus 7 ~Ii~~GdEll-~G~i~dtn~~~l~~~L~~~G--~~v~~~~~v~Dd~~~I~~~l~~a~~-------------~~DlVIttG 70 (264)
T PRK01215 7 WIITIGNELL-IGRTVNTNASWIARRLTYLG--YTVRRITVVMDDIEEIVSAFREAID-------------RADVVVSTG 70 (264)
T ss_pred EEEEEChhcc-CCeEEEhhHHHHHHHHHHCC--CeEEEEEEeCCCHHHHHHHHHHHhc-------------CCCEEEEeC
Confidence 4788999998 5543222 4333333344 6676677777666655555555433 459888884
Q ss_pred c
Q 026021 81 G 81 (244)
Q Consensus 81 G 81 (244)
|
T Consensus 71 G 71 (264)
T PRK01215 71 G 71 (264)
T ss_pred C
Confidence 4
No 294
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=22.65 E-value=2.4e+02 Score=21.31 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhcCCCee-echhHhhhhhhcccccccccccCChhH
Q 026021 154 AAGAYAKACIEVAGECGLPVV-DLWTKMQQLADWKTAYLSDGLHLNETG 201 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~~i-D~~~~~~~~~~~~~~~~~DgiHpn~~G 201 (244)
.+......++.+|++++++++ +-+. .....+..||+|++...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~l~i~~~~------~la~~~g~~GvHl~~~~ 83 (196)
T TIGR00693 41 ERLALAEKLQELCRRYGVPFIVNDRV------DLALALGADGVHLGQDD 83 (196)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEECHH------HHHHHcCCCEEecCccc
Confidence 445666778888888877643 3221 11223568999998653
No 295
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=22.65 E-value=2.3e+02 Score=23.12 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCCh
Q 026021 101 EYKHNLHSIVSFLKNRWPNTLVLLITPPPIDE 132 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~ 132 (244)
-+...+...++.++++ +++||.+|....++
T Consensus 188 G~t~e~i~~a~~ak~~--ga~vIaiT~~~~sp 217 (281)
T COG1737 188 GYTREIVEAAELAKER--GAKVIAITDSADSP 217 (281)
T ss_pred CCcHHHHHHHHHHHHC--CCcEEEEcCCCCCc
Confidence 3467788889999997 57899998875443
No 296
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=22.55 E-value=2.6e+02 Score=22.66 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCccc-ChhHHHHHHHHHHHHHHhh-CCCceEEEE
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHV-PLHEYKHNLHSIVSFLKNR-WPNTLVLLI 125 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~l~~~v~~~~~~-~p~~~vil~ 125 (244)
...+-||+.+...|+...+ ... ....+...+++-++++.+. +-..+|+++
T Consensus 24 ~PlnGvil~vs~~~Ll~~~-----~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv 75 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNAD-----EAERELEALARALRQRLEELQRTLGVRLPVYVV 75 (266)
T ss_pred CCCCEEEEEEEHHHHhcCC-----hhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEee
Confidence 5669999999999996532 111 2467777777777777765 335557776
No 297
>PRK08999 hypothetical protein; Provisional
Probab=22.54 E-value=1.6e+02 Score=24.26 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCCe-eechhHhhhhhhcccccccccccCChhHH
Q 026021 151 TNEAAGAYAKACIEVAGECGLPV-VDLWTKMQQLADWKTAYLSDGLHLNETGN 202 (244)
Q Consensus 151 ~~~~~~~~~~~~~~~a~~~~v~~-iD~~~~~~~~~~~~~~~~~DgiHpn~~G~ 202 (244)
........-..++++|+++++.+ |+-+..+ ...+-.||+|.+..-.
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~liind~~~l------a~~~~~~GvHl~~~d~ 215 (312)
T PRK08999 169 PPAAYRALARAALGLCRRAGAQLLLNGDPEL------AEDLGADGVHLTSAQL 215 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEECcHHH------HHhcCCCEEEcChhhc
Confidence 34456677778888999888875 5533222 2235589999997543
No 298
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=22.47 E-value=1.3e+02 Score=26.19 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcC-CCeeech
Q 026021 99 LHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECG-LPVVDLW 177 (244)
Q Consensus 99 ~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-v~~iD~~ 177 (244)
.+...-+++++.+.+++..|+ +|+++....... -.| +.++++|++.| +.++|+-
T Consensus 151 ~~~~~ID~d~l~~~a~~~kPk--lIi~G~S~y~~~----------------------~d~-~~~reIad~vga~l~~D~s 205 (399)
T PF00464_consen 151 PDTGLIDYDELEKLAKEHKPK--LIICGASSYPRP----------------------IDF-KRFREIADEVGAYLMADIS 205 (399)
T ss_dssp TTTSSB-HHHHHHHHHHH--S--EEEEE-SSTSS-------------------------H-HHHHHHHHHTT-EEEEE-T
T ss_pred cCCCeECHHHHHHHHhhcCCC--EEEECchhccCc----------------------cCH-HHHHHHHHhcCcEEEeccc
Confidence 445566888888989888665 777776432111 122 66778888876 4467875
Q ss_pred hHh
Q 026021 178 TKM 180 (244)
Q Consensus 178 ~~~ 180 (244)
...
T Consensus 206 H~~ 208 (399)
T PF00464_consen 206 HIA 208 (399)
T ss_dssp TTH
T ss_pred ccc
Confidence 554
No 299
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=22.37 E-value=2.9e+02 Score=20.61 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=26.8
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...+.+++.+..+|. +.|..-.+..+..+++..+++.++|++.
T Consensus 71 ~~a~~~ilvyd~~~~--------------~Sf~~~~~~w~~~i~~~~~~~piilvgn 113 (176)
T cd04133 71 RGADVFVLAFSLISR--------------ASYENVLKKWVPELRHYAPNVPIVLVGT 113 (176)
T ss_pred CCCcEEEEEEEcCCH--------------HHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 456778888765554 3344333555666666556777888874
No 300
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.35 E-value=2e+02 Score=23.15 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeec
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDL 176 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 176 (244)
.+.+.++++.+++. ++++++..+..-. +..+.+.+++++.+++++.+
T Consensus 192 ~~~l~~l~~~ik~~--~v~~if~e~~~~~-------------------------k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 192 PADIAAFQNAIKNR--QIDALIVNPQQAS-------------------------SATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred HHHHHHHHHHHHhC--CCCEEEeCCCCCc-------------------------HHHHHHHHHHHHcCCCEEee
Confidence 67888999999997 5678888773221 23355556788889988765
No 301
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=22.35 E-value=51 Score=20.60 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=8.5
Q ss_pred eEEEEccccc
Q 026021 4 KIYLFGDSIT 13 (244)
Q Consensus 4 ~il~iGDSit 13 (244)
++++||||+.
T Consensus 23 ~~~~VGD~~~ 32 (75)
T PF13242_consen 23 RCVMVGDSLE 32 (75)
T ss_dssp GEEEEESSTT
T ss_pred HEEEEcCCcH
Confidence 7999999944
No 302
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=22.33 E-value=98 Score=23.17 Aligned_cols=33 Identities=12% Similarity=-0.012 Sum_probs=20.9
Q ss_pred cccCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHH
Q 026021 68 RERVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFL 113 (244)
Q Consensus 68 ~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 113 (244)
+...++|++|+-+| |.. .++.....++++++..
T Consensus 107 tlePkidlLIvG~G--d~~-----------~p~~v~~~V~~F~k~~ 139 (196)
T KOG3363|consen 107 TLEPKIDLLIVGCG--DKK-----------HPDKVRPSVRQFVKSH 139 (196)
T ss_pred hcCCCccEEEEecC--CcC-----------CchhcCHHHHHHHHHh
Confidence 33688999998887 443 2444555566666554
No 303
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=22.28 E-value=4e+02 Score=21.09 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=63.5
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCcc
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPER 150 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (244)
...+.|=|.++-.....+. ........+.+.++++|+.+++++ ..|++--... ..+..... ....
T Consensus 33 ~G~n~VRi~v~~~~~~~~~----~~~~~~~~~~~~ld~~v~~a~~~g--i~vild~h~~------~~w~~~~~---~~~~ 97 (281)
T PF00150_consen 33 LGFNTVRIPVGWEAYQEPN----PGYNYDETYLARLDRIVDAAQAYG--IYVILDLHNA------PGWANGGD---GYGN 97 (281)
T ss_dssp TTESEEEEEEESTSTSTTS----TTTSBTHHHHHHHHHHHHHHHHTT---EEEEEEEES------TTCSSSTS---TTTT
T ss_pred CCCCEEEeCCCHHHhcCCC----CCccccHHHHHHHHHHHHHHHhCC--CeEEEEeccC------cccccccc---cccc
Confidence 6777777777753332111 111234688999999999999985 4454432221 00000000 0112
Q ss_pred chHHHHHHHHHHHHHHHhc----CCCeeechhHhhhhhhcccccccccccCChhHHHHHHHHHHHHHhhcCCC
Q 026021 151 TNEAAGAYAKACIEVAGEC----GLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKTEGLS 219 (244)
Q Consensus 151 ~~~~~~~~~~~~~~~a~~~----~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~~~~~ 219 (244)
.......+.+..+.+++.+ .+..+++.+....... . ...-=.+...+..+.+.+.+.|++....
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~---~--~~w~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGND---D--ANWNAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTS---T--TTTSHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCC---c--cccccccchhhhhHHHHHHHHHHhcCCc
Confidence 2223444555566666654 3445555332111100 0 0000012355677888889999887543
No 304
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.21 E-value=3.8e+02 Score=23.10 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=23.9
Q ss_pred EEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCCh
Q 026021 77 AVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPIDE 132 (244)
Q Consensus 77 ii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~ 132 (244)
++.-|.||. .+.++.+++.++.. .++|-++...++..
T Consensus 284 vLI~GvNDs-----------------~eda~~L~~~l~~~--~~~VnlIpyn~~~~ 320 (368)
T PRK14456 284 MLLEGINDS-----------------PEDARKLIRFASRF--FCKINLIDYNSIVN 320 (368)
T ss_pred EEEcCCCCC-----------------HHHHHHHHHHHhcC--CCeeEEeeeccCCC
Confidence 445688988 56777777777765 35566665545443
No 305
>PTZ00346 histone deacetylase; Provisional
Probab=22.17 E-value=2.4e+02 Score=24.88 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=26.6
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEE
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLI 125 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~ 125 (244)
..+||+|+++.|. |....+.- ....++.+.|.. +++.+++.. .+++++
T Consensus 266 ~F~PdlIvvsaG~-Da~~~DpL-g~l~LT~~g~~~----~~~~l~~~~--~plv~v 313 (429)
T PTZ00346 266 RYSPDAIVLQCGA-DSLAGDRL-GLLNLSSFGHGQ----CVQAVRDLG--IPMLAL 313 (429)
T ss_pred hcCCCEEEEECCc-cCCCCCCC-CCceeCHHHHHH----HHHHHHhcC--CCEEEE
Confidence 4899999999996 33322211 123345555544 556666653 234444
No 306
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=21.95 E-value=2.8e+02 Score=24.11 Aligned_cols=44 Identities=2% Similarity=-0.078 Sum_probs=29.6
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPP 129 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~ 129 (244)
.++|+|+|.-.+ ....-.....++++.+++.+|+++|++.++.+
T Consensus 32 ~~aD~v~intct---------------v~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a 75 (414)
T TIGR01579 32 DKADVYIINTCT---------------VTAKADSKARRAIRRARRQNPTAKIIVTGCYA 75 (414)
T ss_pred ccCCEEEEeccc---------------cchHHHHHHHHHHHHHHhhCCCcEEEEECCcc
Confidence 568999987421 11222345667777888888888888887654
No 307
>PRK12354 carbamate kinase; Reviewed
Probab=21.94 E-value=2.9e+02 Score=23.18 Aligned_cols=46 Identities=9% Similarity=0.142 Sum_probs=26.5
Q ss_pred EEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEE
Q 026021 75 AVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLI 125 (244)
Q Consensus 75 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~ 125 (244)
.+||.+|.|-+...+ ...+.+.-.++++...+.+.+...+-+|+++
T Consensus 2 ~iVialGGnal~~~~-----~~~~~~~~~~~v~~~a~~ia~~~~~~~vvi~ 47 (307)
T PRK12354 2 RIVVALGGNALLRRG-----EPLTAENQRANIRIAAEQIAKIAREHELVIV 47 (307)
T ss_pred eEEEEeccHHhCCCC-----CCcCHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 478999999997543 2223343344565555555554333345555
No 308
>PLN02540 methylenetetrahydrofolate reductase
Probab=21.72 E-value=1.9e+02 Score=26.51 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred cccccCChhHHHHHHHHHHHHHh
Q 026021 192 SDGLHLNETGNRVVFEEVVMKLK 214 (244)
Q Consensus 192 ~DgiHpn~~G~~~~a~~l~~~l~ 214 (244)
.+|+|+=.-+....+..|++.+.
T Consensus 262 v~GiHfYTlN~e~~v~~ILe~lg 284 (565)
T PLN02540 262 IKGLHLYTLNLEKSALAILMNLG 284 (565)
T ss_pred CCEEEECccCChHHHHHHHHHcC
Confidence 78999999999999988888764
No 309
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.71 E-value=2.4e+02 Score=19.46 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeee
Q 026021 105 NLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVD 175 (244)
Q Consensus 105 ~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD 175 (244)
..++.++.++.. +++.+++.. +.-....+.+...|..++|+++.
T Consensus 29 G~~~vlkalk~g--kaklViiA~-------------------------D~~~~~kkki~~~~~~~~Vpv~~ 72 (108)
T PTZ00106 29 GTKSTLKALRNG--KAKLVIISN-------------------------NCPPIRRSEIEYYAMLSKTGVHH 72 (108)
T ss_pred cHHHHHHHHHcC--CeeEEEEeC-------------------------CCCHHHHHHHHHHHhhcCCCEEE
Confidence 445566666654 566777765 11223446777788999999875
No 310
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=21.68 E-value=6e+02 Score=22.87 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQ 182 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~ 182 (244)
.+.+.++++.+++. +++++++.+.... . .+.++.++++.|++++.++.
T Consensus 406 ~~~L~~Li~~IK~~--~V~~IF~Epq~~~----------------------~----~~~l~~IA~e~Gv~V~~l~~---- 453 (479)
T TIGR03772 406 LADRRRLTRTIENL--KVPAVFLEPNLAA----------------------R----STTLNEIADELGVRVCAIYG---- 453 (479)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCCC----------------------c----hHHHHHHHHHcCCcEEeeec----
Confidence 77889999999997 6778888873221 0 14566778888888765421
Q ss_pred hhhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 183 LADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 183 ~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
|.+-.....|..+....++.|.+
T Consensus 454 ----------d~l~~~~~tY~~~M~~N~~~L~~ 476 (479)
T TIGR03772 454 ----------DTFDDDVTNYVDLMRFNADSLAD 476 (479)
T ss_pred ----------CCCCCccccHHHHHHHHHHHHHH
Confidence 11112234677777666666654
No 311
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=21.58 E-value=1.7e+02 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=22.3
Q ss_pred eEEEEcccccccccCCCChHHHHHHhhccccceEeecc
Q 026021 4 KIYLFGDSITESSFTYGGWGASLAHHFSRTVDVVLRGY 41 (244)
Q Consensus 4 ~il~iGDSit~~g~~~~~~~~~l~~~~~~~~~v~n~g~ 41 (244)
.+++||.|+- +=|...|+++++-+.-.+|=++
T Consensus 60 ~~~liGSSlG------G~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 60 NVVLIGSSLG------GFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred CeEEEEEChH------HHHHHHHHHHhCCCEEEEcCCC
Confidence 5899999997 3367778888865544555433
No 312
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=21.38 E-value=4.1e+02 Score=20.93 Aligned_cols=52 Identities=0% Similarity=-0.161 Sum_probs=29.7
Q ss_pred HHHHHhcCCCeeechhH--hhhhhhcccccccccccCChhHHHHHHHHHHHHHhh
Q 026021 163 IEVAGECGLPVVDLWTK--MQQLADWKTAYLSDGLHLNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 163 ~~~a~~~~v~~iD~~~~--~~~~~~~~~~~~~DgiHpn~~G~~~~a~~l~~~l~~ 215 (244)
++...++++.+|=.+.. |............||.++. .....+|+.|++.+..
T Consensus 173 ~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~~~~-~~K~~~a~~i~~~~~~ 226 (229)
T PRK06732 173 RASLIKNQADYILANDLTDISADQHKALLVSKNEVYTA-QTKEEIADLLLERIEK 226 (229)
T ss_pred HHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCeeeC-CCHHHHHHHHHHHHHh
Confidence 33334456665433332 4333333334567776644 5667899999998865
No 313
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=21.27 E-value=4.5e+02 Score=24.19 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeeechhHhhhhhhcccccccccccCChhHHHHHHH
Q 026021 154 AAGAYAKACIEVAGECGLPVVDLWTKMQQLADWKTAYLSDGLHLNETGNRVVFE 207 (244)
Q Consensus 154 ~~~~~~~~~~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~ 207 (244)
.-+.+|..++.-.-..|..|+|+.........-.-....||+-.|++-.++--.
T Consensus 542 NPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCDG~DlTPkIqeLK~q 595 (1004)
T KOG0782|consen 542 NPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCDGVDLTPKIQELKLQ 595 (1004)
T ss_pred CHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEecCccCChhhhhcccc
Confidence 346788888776666788888887654433221123568999999987665433
No 314
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.15 E-value=4.6e+02 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCCh
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDE 132 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~ 132 (244)
.+..+++++.++.. +++|-|+...|...
T Consensus 265 ~e~a~~L~~ll~~~--~~~VNLIp~Np~~~ 292 (345)
T PRK14466 265 LKHAKELVKLLRGI--DCRVNLIRFHAIPG 292 (345)
T ss_pred HHHHHHHHHHHcCC--CceEEEEecCCCCC
Confidence 56667777777754 47788887766543
No 315
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=21.13 E-value=3.7e+02 Score=20.33 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.5
Q ss_pred CCCeEEEEccccc
Q 026021 1 MRPKIYLFGDSIT 13 (244)
Q Consensus 1 ~~~~il~iGDSit 13 (244)
|..+|+++.|.-.
T Consensus 1 m~~~Ilivdd~~~ 13 (229)
T PRK10161 1 MARRILVVEDEAP 13 (229)
T ss_pred CCCeEEEEcCCHH
Confidence 7778999988766
No 316
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.97 E-value=4.7e+02 Score=21.58 Aligned_cols=117 Identities=4% Similarity=-0.097 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEEcCCCCC--hhhhhcCC--CCCCCCCCCc--c-----chHHHHHHHHHHHHHHH
Q 026021 99 LHEYKHNLHSIVSFLKNRWPNTLVLLITPPPID--EEARLKHP--YVENPTGLPE--R-----TNEAAGAYAKACIEVAG 167 (244)
Q Consensus 99 ~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~~--~~~~~~~~--~~~~~~~~~~--~-----~~~~~~~~~~~~~~~a~ 167 (244)
.+.+.+.++++-+.+++..|++-|++.+..... ......+. .+........ . ....-..+.+.+.+.+.
T Consensus 30 ~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i~~~l~ 109 (284)
T PRK13366 30 WQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHIAQSVI 109 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 567888999999999998888644443332111 10011111 0111100000 0 11122466677777777
Q ss_pred hcCCCeeechhHhhhhhhccc--c--------------ccccccc---CChhHHHHHHHHHHHHHhh
Q 026021 168 ECGLPVVDLWTKMQQLADWKT--A--------------YLSDGLH---LNETGNRVVFEEVVMKLKT 215 (244)
Q Consensus 168 ~~~v~~iD~~~~~~~~~~~~~--~--------------~~~DgiH---pn~~G~~~~a~~l~~~l~~ 215 (244)
+.++.+.-....-.+++-+.. . .....++ |+.+-+..++++|.+.+++
T Consensus 110 ~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~~ 176 (284)
T PRK13366 110 QDDFDLTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVES 176 (284)
T ss_pred HCCCCEeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 777765432221111111100 0 1112223 4788889999999999864
No 317
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=20.88 E-value=2.7e+02 Score=23.10 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=34.4
Q ss_pred cCCccEEEEEeccCCCCCCCCCCCCcccChh---HHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 70 RVSTIAVAVFFGANDACLPDRCGAFQHVPLH---EYKHNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 70 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~---~~~~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
....++|||-.|.+-.. .....+ +=.+-++.++-.+-+..|++.+++++.|
T Consensus 86 sa~S~lvIiTAGarq~~--------gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNP 139 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSE--------GESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNP 139 (332)
T ss_pred cCCCcEEEEecCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 45678999999977652 112233 2334566777777778899988888776
No 318
>PRK05748 replicative DNA helicase; Provisional
Probab=20.80 E-value=4e+02 Score=23.45 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeechhHhh
Q 026021 153 EAAGAYAKACIEVAGECGLPVVDLWTKMQ 181 (244)
Q Consensus 153 ~~~~~~~~~~~~~a~~~~v~~iD~~~~~~ 181 (244)
..+..+...++.+|++.+++++=+.+...
T Consensus 338 ~~i~~i~~~LK~lAke~~i~vi~lsQlnr 366 (448)
T PRK05748 338 QEVSEISRSLKALAKELKVPVIALSQLSR 366 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEecccCh
Confidence 45778889999999999999987766654
No 319
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=20.56 E-value=4.5e+02 Score=21.62 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=30.0
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcCCCC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITPPPI 130 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~~~~ 130 (244)
..||++|+.+|.-= ......-|.+.++++-..+-.. ++-.+-++..|.
T Consensus 132 ~~~Dv~iiEiGGTV----------GDIEs~pFlEAirQl~~~~G~~--n~~~IHvtlVP~ 179 (276)
T PF06418_consen 132 PEPDVVIIEIGGTV----------GDIESLPFLEAIRQLRNEVGRE--NVCFIHVTLVPY 179 (276)
T ss_dssp CT-SEEEEEEESET----------TSCCCHHHHHHHHHHHHHH-TT--CEEEEEEEE--E
T ss_pred CCCCEEEEecCCcc----------cccccccHHHHHHHHHHHhCcC--cEEEEEEeeeee
Confidence 57999999998521 2234577899999888877554 455555554443
No 320
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=20.54 E-value=2.6e+02 Score=20.32 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=23.6
Q ss_pred CCccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 71 VSTIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 71 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...|.+|+.+-.+|. +. ..+++..++.++....+++++++..
T Consensus 71 ~~~d~~i~v~d~~~~--------------~s-~~~~~~~~~~i~~~~~~~piiiv~n 112 (166)
T cd00877 71 IGGQCAIIMFDVTSR--------------VT-YKNVPNWHRDLVRVCGNIPIVLCGN 112 (166)
T ss_pred cCCCEEEEEEECCCH--------------HH-HHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 457888888754443 22 2344555555555444566776655
No 321
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=20.45 E-value=2.9e+02 Score=19.38 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhH
Q 026021 102 YKHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTK 179 (244)
Q Consensus 102 ~~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~ 179 (244)
....++..++.++.. .+.+++++- +. .-..+...+..+|.+++++|+-+.+.
T Consensus 28 i~~G~~e~~Kai~~g--~a~LVviA~-Dv-----------------------~P~~~~~~l~~lc~~~~vpyv~V~sk 79 (116)
T COG1358 28 LKKGTNEVTKAIERG--KAKLVVIAE-DV-----------------------SPEELVKHLPALCEEKNVPYVYVGSK 79 (116)
T ss_pred chhhHHHHHHHHHcC--CCcEEEEec-CC-----------------------CHHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 355666666766664 566777665 11 11255577888999999999887554
No 322
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=20.40 E-value=89 Score=30.22 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 101 EYKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 101 ~~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
...+-++..++..++..++.+|-+++-
T Consensus 802 aV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 802 GVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 345566666666666446777877654
No 323
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.18 E-value=1.4e+02 Score=24.06 Aligned_cols=44 Identities=9% Similarity=0.056 Sum_probs=30.5
Q ss_pred ccEEEEEeccCCCCCCCCCCCCcccChhHHHHHHHHHHHHHHhhCC
Q 026021 73 TIAVAVFFGANDACLPDRCGAFQHVPLHEYKHNLHSIVSFLKNRWP 118 (244)
Q Consensus 73 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~p 118 (244)
+.+-.+++|.||+...-. ......-.++...+.+++..+++.+.
T Consensus 161 ~gvd~l~iG~~DLs~slG--~~~~~~~~~v~~a~~~v~~aa~a~G~ 204 (249)
T TIGR03239 161 DGVDGIFVGPSDLAAALG--HLGNPNHPDVQKAIRHIFDRAAAHGK 204 (249)
T ss_pred CCCCEEEEChHHHHHHcC--CCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 556678999999864221 11122335788899999999999864
No 324
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=20.14 E-value=2.9e+02 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCC
Q 026021 104 HNLHSIVSFLKNRWPNTLVLLITPP 128 (244)
Q Consensus 104 ~~l~~~v~~~~~~~p~~~vil~~~~ 128 (244)
+.+++.++..++...++++++++.|
T Consensus 176 ~~le~~~~~~~~~~~~~k~v~l~nP 200 (468)
T PLN02450 176 SALEEAYQQAQKLNLKVKGVLITNP 200 (468)
T ss_pred HHHHHHHHHHHhcCCCeeEEEEecC
Confidence 3344444444444556777777744
No 325
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=20.10 E-value=2.1e+02 Score=21.31 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeech
Q 026021 103 KHNLHSIVSFLKNRWPNTLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLW 177 (244)
Q Consensus 103 ~~~l~~~v~~~~~~~p~~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~ 177 (244)
...++++++.+++. +++.++++-+...-... ....+..+.++...++++|+++++.++=+.
T Consensus 126 ~~~~~~l~~~~~~~-~~~~lvviD~l~~~~~~-------------~~~~~~~~~~~~~~l~~la~~~~~~vi~v~ 186 (193)
T PF13481_consen 126 DEDLEELEAALKEL-YGPDLVVIDPLQSLHDG-------------DENSNSAVAQLMQELKRLAKEYGVAVILVH 186 (193)
T ss_dssp HHHHHHHHHHHTT-----SEEEEE-GGGG--S--------------TT-HHHHHHHHHHHHHHHHHH--EEEEEE
T ss_pred hHHHHHHHHHHhhc-CCCcEEEEcCHHHHhcC-------------CCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 34566677777663 23568888653211110 012223347888999999999998876543
No 326
>PTZ00088 adenylate kinase 1; Provisional
Probab=20.07 E-value=2.4e+02 Score=22.35 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCChhhhhcCCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCCeeechhHhhh
Q 026021 120 TLVLLITPPPIDEEARLKHPYVENPTGLPERTNEAAGAYAKACIEVAGECGLPVVDLWTKMQQ 182 (244)
Q Consensus 120 ~~vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~~ 182 (244)
.+|+++++|-.+.. ...+.+|+.++++++++...+..
T Consensus 7 mrIvl~G~PGsGK~--------------------------T~a~~La~~~g~~~is~gdllr~ 43 (229)
T PTZ00088 7 LKIVLFGAPGVGKG--------------------------TFAEILSKKENLKHINMGNILRE 43 (229)
T ss_pred ceEEEECCCCCCHH--------------------------HHHHHHHHHhCCcEEECChHHHH
Confidence 45888888777655 22334455666777766666644
No 327
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=20.07 E-value=1.6e+02 Score=22.28 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcC
Q 026021 102 YKHNLHSIVSFLKNRWPNTLVLLITP 127 (244)
Q Consensus 102 ~~~~l~~~v~~~~~~~p~~~vil~~~ 127 (244)
=..++.++|+...++.|+++++|++-
T Consensus 63 G~~~~~~~i~~~~~~CP~~kivl~GY 88 (179)
T PF01083_consen 63 GVANLVRLIEEYAARCPNTKIVLAGY 88 (179)
T ss_dssp HHHHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 35577777777777899999999976
Done!