Query 026023
Match_columns 244
No_of_seqs 134 out of 1536
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 1.6E-44 3.5E-49 324.6 27.5 244 1-244 1-244 (386)
2 COG1052 LdhA Lactate dehydroge 100.0 4.1E-42 8.8E-47 302.3 23.7 206 15-244 2-208 (324)
3 PRK15409 bifunctional glyoxyla 100.0 1.7E-40 3.6E-45 293.1 24.1 206 15-244 2-208 (323)
4 COG0111 SerA Phosphoglycerate 100.0 1.8E-40 3.9E-45 292.1 20.9 204 14-244 2-205 (324)
5 PRK08410 2-hydroxyacid dehydro 100.0 5.7E-40 1.2E-44 288.7 23.5 198 17-244 2-204 (311)
6 PRK11790 D-3-phosphoglycerate 100.0 5.1E-40 1.1E-44 298.4 23.8 207 9-244 4-211 (409)
7 PRK13243 glyoxylate reductase; 100.0 8.8E-39 1.9E-43 283.6 24.6 207 15-244 2-212 (333)
8 PRK06487 glycerate dehydrogena 100.0 8E-39 1.7E-43 282.1 23.1 185 30-244 18-205 (317)
9 PRK06932 glycerate dehydrogena 100.0 1.6E-38 3.5E-43 279.7 21.5 170 50-244 33-205 (314)
10 KOG0068 D-3-phosphoglycerate d 100.0 2.9E-38 6.4E-43 270.7 18.7 203 15-244 6-208 (406)
11 PLN03139 formate dehydrogenase 100.0 3.8E-37 8.3E-42 276.2 23.4 194 30-244 68-263 (386)
12 TIGR01327 PGDH D-3-phosphoglyc 100.0 4.7E-37 1E-41 287.2 23.4 201 17-244 1-201 (525)
13 PRK07574 formate dehydrogenase 100.0 1.4E-36 3.1E-41 272.6 22.5 193 31-244 62-256 (385)
14 PRK13581 D-3-phosphoglycerate 100.0 1.6E-36 3.4E-41 283.7 23.4 201 16-244 1-202 (526)
15 PRK08605 D-lactate dehydrogena 100.0 2.2E-36 4.7E-41 268.3 22.6 207 14-244 2-208 (332)
16 PLN02928 oxidoreductase family 100.0 1E-35 2.2E-40 265.2 23.9 216 10-244 13-234 (347)
17 PRK12480 D-lactate dehydrogena 100.0 1.1E-35 2.4E-40 263.3 22.5 204 15-244 1-206 (330)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 5.7E-34 1.2E-38 248.6 15.4 176 50-244 49-225 (336)
19 PRK15438 erythronate-4-phospha 100.0 1.2E-32 2.6E-37 246.4 20.1 175 16-244 1-175 (378)
20 PRK06436 glycerate dehydrogena 100.0 1.6E-31 3.6E-36 233.7 19.2 148 62-244 34-181 (303)
21 PRK00257 erythronate-4-phospha 100.0 2E-31 4.3E-36 239.1 19.2 175 16-244 1-175 (381)
22 PRK15469 ghrA bifunctional gly 100.0 7.6E-31 1.6E-35 230.6 19.8 188 17-244 2-198 (312)
23 PF02826 2-Hacid_dh_C: D-isome 99.9 8.1E-22 1.8E-26 160.5 9.3 99 128-244 1-99 (178)
24 KOG0067 Transcription factor C 99.8 7.6E-20 1.6E-24 159.2 8.1 177 50-244 61-241 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.8 2.1E-18 4.5E-23 133.8 12.2 101 18-127 1-101 (133)
26 TIGR02853 spore_dpaA dipicolin 99.8 4.2E-18 9E-23 148.4 12.8 173 29-244 16-217 (287)
27 PRK08306 dipicolinate synthase 99.6 5.8E-14 1.3E-18 123.0 16.8 174 29-244 17-218 (296)
28 PTZ00075 Adenosylhomocysteinas 99.5 2.7E-14 5.8E-19 130.8 10.6 119 93-244 198-317 (476)
29 PRK13403 ketol-acid reductoiso 99.1 2.2E-10 4.8E-15 100.3 7.1 68 161-244 12-79 (335)
30 PRK05476 S-adenosyl-L-homocyst 98.9 5.3E-08 1.1E-12 89.0 14.4 119 92-243 155-274 (425)
31 TIGR00936 ahcY adenosylhomocys 98.8 2.3E-07 5E-12 84.4 15.1 67 161-243 191-257 (406)
32 PF00670 AdoHcyase_NAD: S-aden 98.8 1.9E-08 4.2E-13 79.9 6.5 67 161-243 19-85 (162)
33 PLN02494 adenosylhomocysteinas 98.7 2.9E-08 6.4E-13 91.2 8.1 67 161-243 250-316 (477)
34 PRK05479 ketol-acid reductoiso 98.6 1.8E-07 4E-12 82.8 7.5 69 161-244 13-81 (330)
35 cd00401 AdoHcyase S-adenosyl-L 98.5 3.1E-06 6.6E-11 77.3 14.7 68 160-243 197-264 (413)
36 TIGR00465 ilvC ketol-acid redu 98.5 4.8E-07 1E-11 79.9 7.7 67 163-244 1-67 (314)
37 cd01075 NAD_bind_Leu_Phe_Val_D 98.4 2E-06 4.3E-11 71.3 9.2 68 161-243 24-92 (200)
38 PLN02712 arogenate dehydrogena 98.4 9.6E-07 2.1E-11 85.4 8.2 71 158-244 362-433 (667)
39 PRK14189 bifunctional 5,10-met 98.4 1.2E-05 2.5E-10 69.9 14.0 144 33-244 57-209 (285)
40 PF03446 NAD_binding_2: NAD bi 98.4 1.1E-06 2.3E-11 70.4 7.0 64 166-244 2-65 (163)
41 PRK14175 bifunctional 5,10-met 98.3 2.4E-05 5.2E-10 68.0 14.0 144 33-244 57-209 (286)
42 PRK14194 bifunctional 5,10-met 98.3 2.5E-05 5.5E-10 68.3 13.7 143 34-244 59-210 (301)
43 PF03807 F420_oxidored: NADP o 98.2 3.9E-06 8.4E-11 60.8 6.8 64 167-244 1-69 (96)
44 PLN02256 arogenate dehydrogena 98.2 4.3E-06 9.2E-11 73.7 7.6 65 164-244 35-100 (304)
45 PF01488 Shikimate_DH: Shikima 98.1 5.7E-06 1.2E-10 64.2 6.2 73 162-243 9-82 (135)
46 PRK14179 bifunctional 5,10-met 98.1 7.2E-05 1.6E-09 65.0 13.0 144 33-244 57-209 (284)
47 TIGR01505 tartro_sem_red 2-hyd 98.1 7.1E-06 1.5E-10 71.6 6.4 63 167-244 1-63 (291)
48 TIGR00561 pntA NAD(P) transhyd 98.1 0.00048 1E-08 64.6 18.6 155 29-201 21-199 (511)
49 PRK14188 bifunctional 5,10-met 98.1 0.00012 2.6E-09 64.1 13.6 143 33-244 57-209 (296)
50 PRK11559 garR tartronate semia 98.1 1E-05 2.3E-10 70.7 7.0 64 166-244 3-66 (296)
51 PRK14176 bifunctional 5,10-met 98.1 0.00015 3.3E-09 63.0 13.9 143 33-243 63-214 (287)
52 PRK10792 bifunctional 5,10-met 98.0 0.00013 2.9E-09 63.4 13.4 144 33-244 58-210 (285)
53 PLN02712 arogenate dehydrogena 98.0 1.8E-05 3.9E-10 76.7 8.6 67 162-244 49-116 (667)
54 PRK13302 putative L-aspartate 98.0 3E-05 6.5E-10 67.2 8.2 68 165-244 6-75 (271)
55 PF07991 IlvN: Acetohydroxy ac 98.0 3.2E-05 7E-10 61.4 7.4 67 163-244 2-68 (165)
56 PRK15461 NADH-dependent gamma- 97.9 2.9E-05 6.4E-10 68.1 7.1 64 166-244 2-65 (296)
57 PRK06545 prephenate dehydrogen 97.9 3.2E-05 7E-10 69.7 7.2 68 166-244 1-68 (359)
58 PRK07679 pyrroline-5-carboxyla 97.9 5.8E-05 1.3E-09 65.6 8.1 67 165-244 3-73 (279)
59 PRK14192 bifunctional 5,10-met 97.9 0.00085 1.8E-08 58.5 15.3 55 161-244 155-210 (283)
60 PRK12490 6-phosphogluconate de 97.8 4.2E-05 9.1E-10 67.2 6.9 63 167-244 2-67 (299)
61 cd01080 NAD_bind_m-THF_DH_Cycl 97.8 6.7E-05 1.4E-09 60.5 7.2 54 161-243 40-94 (168)
62 PRK14191 bifunctional 5,10-met 97.8 0.0006 1.3E-08 59.3 13.4 144 33-244 56-208 (285)
63 PRK05225 ketol-acid reductoiso 97.8 4.1E-05 9E-10 70.1 6.2 64 160-244 31-105 (487)
64 PRK07417 arogenate dehydrogena 97.8 5.8E-05 1.3E-09 65.6 6.5 64 167-244 2-65 (279)
65 PRK07502 cyclohexadienyl dehyd 97.8 5.8E-05 1.3E-09 66.5 6.4 67 165-244 6-74 (307)
66 PRK12491 pyrroline-5-carboxyla 97.7 0.0001 2.3E-09 63.9 7.3 65 166-244 3-71 (272)
67 cd01065 NAD_bind_Shikimate_DH 97.7 0.00014 3.1E-09 57.1 7.5 73 162-244 16-89 (155)
68 TIGR01035 hemA glutamyl-tRNA r 97.7 7.6E-05 1.6E-09 68.6 6.8 71 162-244 177-248 (417)
69 COG0499 SAM1 S-adenosylhomocys 97.7 6.7E-05 1.5E-09 66.4 6.0 67 161-243 205-271 (420)
70 PRK15059 tartronate semialdehy 97.7 0.00011 2.4E-09 64.4 7.3 62 167-244 2-63 (292)
71 TIGR00518 alaDH alanine dehydr 97.7 8.6E-05 1.9E-09 67.2 6.7 196 29-243 22-237 (370)
72 PRK09424 pntA NAD(P) transhydr 97.7 0.0026 5.7E-08 59.8 16.7 157 29-201 22-200 (509)
73 PF10727 Rossmann-like: Rossma 97.7 2.1E-05 4.5E-10 60.4 2.2 67 164-244 9-76 (127)
74 PRK09599 6-phosphogluconate de 97.7 0.0001 2.2E-09 64.8 6.7 63 167-244 2-67 (301)
75 PRK11880 pyrroline-5-carboxyla 97.7 0.00015 3.1E-09 62.5 7.4 65 166-244 3-70 (267)
76 PRK11199 tyrA bifunctional cho 97.7 0.00023 5E-09 64.5 8.8 53 164-244 97-150 (374)
77 PLN02688 pyrroline-5-carboxyla 97.6 0.00013 2.8E-09 62.8 6.6 63 167-244 2-69 (266)
78 PLN02545 3-hydroxybutyryl-CoA 97.6 7.6E-05 1.7E-09 65.3 5.3 35 166-201 5-39 (295)
79 PRK14170 bifunctional 5,10-met 97.6 0.0022 4.7E-08 55.8 13.8 144 33-244 56-208 (284)
80 COG2084 MmsB 3-hydroxyisobutyr 97.6 0.00023 5E-09 61.9 7.7 65 166-244 1-65 (286)
81 PRK14178 bifunctional 5,10-met 97.6 0.0017 3.7E-08 56.3 13.0 144 33-244 51-203 (279)
82 PRK14169 bifunctional 5,10-met 97.6 0.0025 5.4E-08 55.4 13.7 144 33-244 55-207 (282)
83 PRK06928 pyrroline-5-carboxyla 97.6 0.00027 5.7E-09 61.5 7.8 67 166-244 2-72 (277)
84 COG2085 Predicted dinucleotide 97.6 0.00036 7.7E-09 57.8 8.0 67 166-244 2-68 (211)
85 cd05213 NAD_bind_Glutamyl_tRNA 97.6 0.00017 3.7E-09 63.7 6.5 70 163-244 176-246 (311)
86 PRK07066 3-hydroxybutyryl-CoA 97.5 0.00028 6E-09 62.7 7.5 78 166-244 8-91 (321)
87 PRK14183 bifunctional 5,10-met 97.5 0.003 6.5E-08 54.8 13.6 143 34-244 57-208 (281)
88 PRK07634 pyrroline-5-carboxyla 97.5 0.00037 8.1E-09 59.1 8.0 67 165-244 4-74 (245)
89 PRK14173 bifunctional 5,10-met 97.5 0.0033 7.2E-08 54.8 13.6 144 33-244 54-206 (287)
90 PRK14186 bifunctional 5,10-met 97.5 0.0035 7.5E-08 54.9 13.7 144 33-244 57-209 (297)
91 PRK14172 bifunctional 5,10-met 97.5 0.0035 7.7E-08 54.3 13.6 144 33-244 57-209 (278)
92 PRK00045 hemA glutamyl-tRNA re 97.5 0.00023 5E-09 65.6 6.6 70 162-243 179-249 (423)
93 PRK08655 prephenate dehydrogen 97.5 0.0003 6.4E-09 65.1 7.3 64 167-244 2-66 (437)
94 PLN00203 glutamyl-tRNA reducta 97.5 0.0003 6.4E-09 66.3 7.2 73 162-243 263-336 (519)
95 TIGR00872 gnd_rel 6-phosphoglu 97.5 0.00019 4.1E-09 63.0 5.5 63 167-244 2-67 (298)
96 PRK13304 L-aspartate dehydroge 97.5 0.00045 9.8E-09 59.7 7.6 64 167-244 3-69 (265)
97 PLN02858 fructose-bisphosphate 97.5 0.00024 5.3E-09 73.9 6.9 65 165-244 324-388 (1378)
98 KOG1370 S-adenosylhomocysteine 97.5 0.0003 6.6E-09 61.1 6.2 66 162-243 211-276 (434)
99 PRK06476 pyrroline-5-carboxyla 97.4 0.00019 4.1E-09 61.6 4.9 65 167-244 2-69 (258)
100 PRK06130 3-hydroxybutyryl-CoA 97.4 0.00047 1E-08 60.7 7.5 77 166-244 5-87 (311)
101 PRK05472 redox-sensing transcr 97.4 0.0003 6.5E-09 58.8 5.9 92 119-244 59-154 (213)
102 PRK07680 late competence prote 97.4 0.00063 1.4E-08 58.9 7.9 65 167-244 2-70 (273)
103 PRK14177 bifunctional 5,10-met 97.4 0.0052 1.1E-07 53.4 13.3 144 33-244 58-210 (284)
104 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.00047 1E-08 58.2 6.6 37 161-198 27-63 (227)
105 PRK08507 prephenate dehydrogen 97.4 0.00059 1.3E-08 59.1 7.3 63 167-244 2-66 (275)
106 COG0287 TyrA Prephenate dehydr 97.4 0.0004 8.7E-09 60.4 6.1 67 165-244 3-72 (279)
107 TIGR01921 DAP-DH diaminopimela 97.4 0.00057 1.2E-08 60.5 7.1 63 166-244 4-68 (324)
108 PRK14167 bifunctional 5,10-met 97.3 0.0081 1.8E-07 52.6 13.9 145 33-244 56-212 (297)
109 PLN02516 methylenetetrahydrofo 97.3 0.0072 1.6E-07 52.9 13.6 145 33-244 64-218 (299)
110 PRK09260 3-hydroxybutyryl-CoA 97.3 0.00065 1.4E-08 59.2 7.2 77 166-244 2-89 (288)
111 PRK06129 3-hydroxyacyl-CoA deh 97.3 0.00071 1.5E-08 59.6 7.4 76 166-244 3-90 (308)
112 cd01078 NAD_bind_H4MPT_DH NADP 97.3 0.00082 1.8E-08 55.1 7.2 80 161-243 24-104 (194)
113 COG0345 ProC Pyrroline-5-carbo 97.3 0.00087 1.9E-08 57.8 7.5 65 166-244 2-70 (266)
114 PRK14618 NAD(P)H-dependent gly 97.3 0.001 2.2E-08 59.1 8.3 76 166-244 5-82 (328)
115 PRK14193 bifunctional 5,10-met 97.3 0.0087 1.9E-07 52.1 13.7 143 34-244 58-211 (284)
116 TIGR01692 HIBADH 3-hydroxyisob 97.3 0.00038 8.3E-09 60.7 5.3 60 170-244 1-60 (288)
117 PRK00094 gpsA NAD(P)H-dependen 97.3 0.00078 1.7E-08 59.4 7.4 75 167-244 3-79 (325)
118 PRK14806 bifunctional cyclohex 97.3 0.00055 1.2E-08 67.3 7.0 66 166-244 4-71 (735)
119 PRK14171 bifunctional 5,10-met 97.3 0.0095 2.1E-07 51.9 13.7 145 33-244 57-210 (288)
120 PRK06718 precorrin-2 dehydroge 97.3 0.00088 1.9E-08 55.6 7.0 72 161-243 6-77 (202)
121 PRK14182 bifunctional 5,10-met 97.3 0.011 2.3E-07 51.5 13.8 145 33-244 55-208 (282)
122 PF01210 NAD_Gly3P_dh_N: NAD-d 97.3 0.0012 2.6E-08 52.4 7.4 75 167-244 1-77 (157)
123 PLN02616 tetrahydrofolate dehy 97.3 0.011 2.3E-07 53.0 14.0 145 33-244 128-282 (364)
124 PRK14185 bifunctional 5,10-met 97.3 0.0095 2E-07 52.1 13.4 144 33-244 56-212 (293)
125 PRK14190 bifunctional 5,10-met 97.3 0.015 3.2E-07 50.7 14.5 144 33-244 57-209 (284)
126 PTZ00431 pyrroline carboxylate 97.3 0.00094 2E-08 57.5 7.1 58 166-244 4-65 (260)
127 COG0026 PurK Phosphoribosylami 97.3 0.0008 1.7E-08 60.0 6.7 68 165-242 1-68 (375)
128 PRK01710 murD UDP-N-acetylmura 97.2 0.00077 1.7E-08 62.7 6.8 37 163-200 12-48 (458)
129 COG0373 HemA Glutamyl-tRNA red 97.2 0.00099 2.1E-08 60.8 7.3 70 162-243 175-245 (414)
130 PRK14181 bifunctional 5,10-met 97.2 0.014 3E-07 50.9 14.0 145 33-244 51-208 (287)
131 KOG0409 Predicted dehydrogenas 97.2 0.00073 1.6E-08 58.7 6.0 68 162-244 32-99 (327)
132 PRK14187 bifunctional 5,10-met 97.2 0.013 2.8E-07 51.3 13.7 145 33-244 57-211 (294)
133 PLN02858 fructose-bisphosphate 97.2 0.00093 2E-08 69.7 7.8 66 164-244 3-68 (1378)
134 PLN02897 tetrahydrofolate dehy 97.2 0.0078 1.7E-07 53.6 12.5 145 33-244 111-265 (345)
135 PRK07340 ornithine cyclodeamin 97.2 0.0016 3.4E-08 57.4 8.2 71 164-243 124-195 (304)
136 PF01113 DapB_N: Dihydrodipico 97.2 0.0012 2.6E-08 50.3 6.3 70 167-242 2-73 (124)
137 PF01408 GFO_IDH_MocA: Oxidore 97.2 0.0021 4.6E-08 48.0 7.6 64 167-244 2-70 (120)
138 TIGR01546 GAPDH-II_archae glyc 97.2 0.0016 3.4E-08 58.0 7.8 77 168-244 1-83 (333)
139 PRK07531 bifunctional 3-hydrox 97.2 0.0011 2.5E-08 62.2 7.4 76 166-244 5-88 (495)
140 PRK08618 ornithine cyclodeamin 97.2 0.0016 3.4E-08 58.0 7.9 73 164-243 126-199 (325)
141 PRK13940 glutamyl-tRNA reducta 97.2 0.001 2.2E-08 61.1 6.7 72 162-244 178-250 (414)
142 PRK06141 ornithine cyclodeamin 97.2 0.0018 3.8E-08 57.4 8.1 72 164-243 124-196 (314)
143 PRK14168 bifunctional 5,10-met 97.2 0.012 2.6E-07 51.5 13.1 144 34-244 59-216 (297)
144 PRK14184 bifunctional 5,10-met 97.1 0.015 3.2E-07 50.7 13.4 144 33-244 56-212 (286)
145 PRK14166 bifunctional 5,10-met 97.1 0.017 3.8E-07 50.2 13.7 145 33-244 55-208 (282)
146 TIGR01470 cysG_Nterm siroheme 97.1 0.0018 4E-08 53.8 7.4 72 161-243 5-76 (205)
147 COG0190 FolD 5,10-methylene-te 97.1 0.034 7.5E-07 48.1 15.3 143 34-244 56-207 (283)
148 PRK14180 bifunctional 5,10-met 97.1 0.02 4.3E-07 49.8 13.9 145 33-244 56-209 (282)
149 PRK00258 aroE shikimate 5-dehy 97.1 0.0017 3.7E-08 56.5 7.3 72 162-243 120-192 (278)
150 TIGR03026 NDP-sugDHase nucleot 97.1 0.0012 2.6E-08 60.5 6.6 75 167-244 2-84 (411)
151 PRK12548 shikimate 5-dehydroge 97.1 0.0018 3.8E-08 56.7 7.3 80 163-243 124-206 (289)
152 PTZ00142 6-phosphogluconate de 97.1 0.0013 2.8E-08 61.4 6.7 69 167-244 3-74 (470)
153 PRK05808 3-hydroxybutyryl-CoA 97.1 0.0012 2.6E-08 57.3 6.2 35 166-201 4-38 (282)
154 KOG2380 Prephenate dehydrogena 97.1 0.0013 2.9E-08 58.0 6.3 64 165-244 52-116 (480)
155 PRK13301 putative L-aspartate 97.1 0.002 4.4E-08 55.3 7.2 63 166-242 3-68 (267)
156 TIGR02371 ala_DH_arch alanine 97.1 0.0025 5.3E-08 56.7 7.9 71 165-243 128-199 (325)
157 PRK12549 shikimate 5-dehydroge 97.0 0.0025 5.3E-08 55.7 7.7 74 163-243 125-199 (284)
158 PRK11064 wecC UDP-N-acetyl-D-m 97.0 0.0015 3.3E-08 60.1 6.7 35 166-201 4-38 (415)
159 PF02737 3HCDH_N: 3-hydroxyacy 97.0 0.0012 2.6E-08 53.7 5.4 74 167-242 1-84 (180)
160 PRK07530 3-hydroxybutyryl-CoA 97.0 0.0017 3.6E-08 56.8 6.6 35 166-201 5-39 (292)
161 PF13241 NAD_binding_7: Putati 97.0 0.00092 2E-08 49.3 4.3 65 162-244 4-68 (103)
162 PRK08293 3-hydroxybutyryl-CoA 97.0 0.0023 5E-08 55.8 7.4 77 166-244 4-92 (287)
163 TIGR01915 npdG NADPH-dependent 97.0 0.0037 8E-08 52.3 8.3 74 167-244 2-76 (219)
164 COG1712 Predicted dinucleotide 97.0 0.002 4.3E-08 53.9 6.4 62 167-242 2-66 (255)
165 PRK14174 bifunctional 5,10-met 97.0 0.022 4.7E-07 50.0 13.1 146 33-244 56-214 (295)
166 PF02882 THF_DHG_CYH_C: Tetrah 97.0 0.0028 6.1E-08 50.6 7.0 55 161-244 32-87 (160)
167 KOG0023 Alcohol dehydrogenase, 97.0 0.001 2.2E-08 58.3 4.6 46 164-211 181-226 (360)
168 PRK09310 aroDE bifunctional 3- 97.0 0.002 4.4E-08 60.3 6.9 40 161-201 328-367 (477)
169 PRK14106 murD UDP-N-acetylmura 97.0 0.003 6.5E-08 58.4 7.9 74 162-243 2-75 (450)
170 PRK14982 acyl-ACP reductase; P 97.0 0.0022 4.9E-08 57.2 6.7 70 161-243 151-222 (340)
171 PLN02350 phosphogluconate dehy 96.9 0.0026 5.7E-08 59.6 7.4 70 167-244 8-80 (493)
172 PRK06407 ornithine cyclodeamin 96.9 0.004 8.6E-08 54.9 7.9 72 165-243 117-189 (301)
173 TIGR02992 ectoine_eutC ectoine 96.9 0.0039 8.5E-08 55.5 8.0 73 164-243 128-201 (326)
174 PRK06719 precorrin-2 dehydroge 96.9 0.0032 6.8E-08 50.1 6.7 41 160-201 8-48 (157)
175 PF02423 OCD_Mu_crystall: Orni 96.9 0.0031 6.7E-08 55.8 7.3 70 166-243 129-199 (313)
176 PRK07819 3-hydroxybutyryl-CoA 96.9 0.0032 6.9E-08 55.0 7.2 35 166-201 6-40 (286)
177 PRK06019 phosphoribosylaminoim 96.9 0.0015 3.3E-08 59.1 5.4 68 165-242 2-69 (372)
178 PRK08291 ectoine utilization p 96.8 0.0056 1.2E-07 54.5 8.1 73 164-243 131-204 (330)
179 TIGR00873 gnd 6-phosphoglucona 96.8 0.0032 6.9E-08 58.8 6.6 67 168-244 2-71 (467)
180 PRK06035 3-hydroxyacyl-CoA deh 96.8 0.0049 1.1E-07 53.8 7.3 35 166-201 4-38 (291)
181 COG0059 IlvC Ketol-acid reduct 96.8 0.0051 1.1E-07 53.6 7.1 67 162-243 15-81 (338)
182 PRK06823 ornithine cyclodeamin 96.7 0.0068 1.5E-07 53.7 7.9 71 165-243 128-199 (315)
183 TIGR02356 adenyl_thiF thiazole 96.7 0.0018 3.9E-08 53.6 4.0 37 161-198 17-54 (202)
184 COG1064 AdhP Zn-dependent alco 96.7 0.0049 1.1E-07 54.9 6.9 37 164-201 166-202 (339)
185 PRK07589 ornithine cyclodeamin 96.7 0.0074 1.6E-07 54.2 8.0 71 165-243 129-200 (346)
186 PF01118 Semialdhyde_dh: Semia 96.7 0.0046 9.9E-08 46.8 5.7 32 167-198 1-33 (121)
187 PRK00676 hemA glutamyl-tRNA re 96.7 0.0036 7.8E-08 55.8 5.9 38 162-200 171-209 (338)
188 PRK06522 2-dehydropantoate 2-r 96.7 0.006 1.3E-07 53.2 7.3 73 167-244 2-74 (304)
189 PF03721 UDPG_MGDP_dh_N: UDP-g 96.7 0.0049 1.1E-07 50.4 6.2 76 166-244 1-84 (185)
190 PRK03369 murD UDP-N-acetylmura 96.7 0.0049 1.1E-07 57.9 7.0 68 163-243 10-77 (488)
191 cd05212 NAD_bind_m-THF_DH_Cycl 96.6 0.01 2.2E-07 46.3 7.5 55 160-243 23-78 (140)
192 PF03435 Saccharop_dh: Sacchar 96.6 0.0027 5.8E-08 57.6 4.9 74 168-244 1-75 (386)
193 PLN02477 glutamate dehydrogena 96.6 0.0049 1.1E-07 56.5 6.4 36 162-198 203-238 (410)
194 PRK00048 dihydrodipicolinate r 96.6 0.0085 1.8E-07 51.5 7.5 64 166-243 2-67 (257)
195 PRK12921 2-dehydropantoate 2-r 96.6 0.0046 9.9E-08 54.0 5.9 74 167-244 2-76 (305)
196 PRK15057 UDP-glucose 6-dehydro 96.6 0.0042 9.1E-08 56.6 5.7 72 167-244 2-81 (388)
197 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.0038 8.3E-08 52.4 5.0 39 161-200 19-57 (217)
198 PRK04207 glyceraldehyde-3-phos 96.5 0.012 2.7E-07 52.7 8.4 76 167-243 3-85 (341)
199 cd05313 NAD_bind_2_Glu_DH NAD( 96.5 0.0042 9.2E-08 53.2 5.0 36 161-197 34-69 (254)
200 PF01262 AlaDh_PNT_C: Alanine 96.5 0.0041 9E-08 49.9 4.7 40 161-201 16-55 (168)
201 PRK00066 ldh L-lactate dehydro 96.5 0.011 2.5E-07 52.3 7.8 74 164-243 5-80 (315)
202 PRK08229 2-dehydropantoate 2-r 96.5 0.0052 1.1E-07 54.7 5.5 33 166-199 3-35 (341)
203 cd05191 NAD_bind_amino_acid_DH 96.4 0.0073 1.6E-07 42.8 5.0 35 162-197 20-55 (86)
204 PTZ00117 malate dehydrogenase; 96.4 0.016 3.5E-07 51.4 8.1 77 163-243 3-80 (319)
205 PRK04284 ornithine carbamoyltr 96.4 0.057 1.2E-06 48.2 11.5 112 104-242 117-230 (332)
206 COG2423 Predicted ornithine cy 96.4 0.017 3.6E-07 51.5 8.0 71 166-243 131-202 (330)
207 PRK12475 thiamine/molybdopteri 96.4 0.0074 1.6E-07 54.0 5.8 38 161-199 20-58 (338)
208 PRK06046 alanine dehydrogenase 96.3 0.016 3.5E-07 51.6 7.9 72 165-244 129-201 (326)
209 PRK14619 NAD(P)H-dependent gly 96.3 0.0057 1.2E-07 53.9 4.9 40 164-204 3-42 (308)
210 PF00185 OTCace: Aspartate/orn 96.3 0.017 3.6E-07 46.0 7.1 75 164-242 1-79 (158)
211 PRK08268 3-hydroxy-acyl-CoA de 96.3 0.01 2.2E-07 56.1 6.7 35 166-201 8-42 (507)
212 PRK02102 ornithine carbamoyltr 96.3 0.062 1.3E-06 47.9 11.3 76 163-242 153-230 (331)
213 PRK15182 Vi polysaccharide bio 96.3 0.0095 2E-07 55.0 6.2 34 166-201 7-40 (425)
214 PRK03515 ornithine carbamoyltr 96.3 0.076 1.7E-06 47.5 11.8 113 104-242 117-231 (336)
215 TIGR01809 Shik-DH-AROM shikima 96.2 0.015 3.3E-07 50.6 7.0 74 163-243 123-197 (282)
216 COG0771 MurD UDP-N-acetylmuram 96.2 0.0085 1.8E-07 55.4 5.6 72 163-243 5-76 (448)
217 PTZ00082 L-lactate dehydrogena 96.2 0.025 5.4E-07 50.3 8.4 77 163-243 4-81 (321)
218 TIGR03376 glycerol3P_DH glycer 96.2 0.024 5.2E-07 50.9 8.3 73 167-244 1-90 (342)
219 PRK12562 ornithine carbamoyltr 96.2 0.08 1.7E-06 47.3 11.5 114 103-242 116-231 (334)
220 PRK02472 murD UDP-N-acetylmura 96.2 0.011 2.4E-07 54.6 6.4 36 163-199 3-38 (447)
221 PRK08762 molybdopterin biosynt 96.2 0.046 1E-06 49.6 10.2 37 161-198 131-168 (376)
222 PRK14031 glutamate dehydrogena 96.2 0.0079 1.7E-07 55.5 5.1 36 161-197 224-259 (444)
223 TIGR00507 aroE shikimate 5-deh 96.2 0.019 4.2E-07 49.6 7.3 38 163-201 115-152 (270)
224 TIGR03316 ygeW probable carbam 96.2 0.12 2.6E-06 46.6 12.5 77 162-242 167-251 (357)
225 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.2 0.015 3.3E-07 54.8 7.1 35 166-201 6-40 (503)
226 COG1748 LYS9 Saccharopine dehy 96.1 0.013 2.8E-07 53.3 6.2 73 166-243 2-75 (389)
227 PRK13303 L-aspartate dehydroge 96.1 0.016 3.4E-07 50.1 6.5 65 166-243 2-68 (265)
228 PRK00779 ornithine carbamoyltr 96.1 0.056 1.2E-06 47.7 10.0 107 105-242 116-223 (304)
229 PRK02006 murD UDP-N-acetylmura 96.1 0.02 4.2E-07 53.9 7.6 36 163-199 5-40 (498)
230 PRK04690 murD UDP-N-acetylmura 96.1 0.014 3E-07 54.5 6.4 37 163-200 6-42 (468)
231 PRK00141 murD UDP-N-acetylmura 96.1 0.016 3.4E-07 54.2 6.7 39 161-200 11-49 (473)
232 PRK09414 glutamate dehydrogena 96.1 0.0092 2E-07 55.2 5.0 36 161-197 228-263 (445)
233 PRK06249 2-dehydropantoate 2-r 96.1 0.0096 2.1E-07 52.5 4.9 34 166-200 6-39 (313)
234 cd01492 Aos1_SUMO Ubiquitin ac 96.1 0.015 3.3E-07 48.0 5.8 38 161-199 17-55 (197)
235 PLN02353 probable UDP-glucose 96.0 0.015 3.4E-07 54.3 6.5 76 166-244 2-86 (473)
236 TIGR00658 orni_carb_tr ornithi 96.0 0.099 2.1E-06 46.1 11.2 110 105-242 112-222 (304)
237 PRK04523 N-acetylornithine car 96.0 0.12 2.6E-06 46.2 11.9 76 163-242 166-250 (335)
238 PRK06223 malate dehydrogenase; 96.0 0.032 6.9E-07 49.0 8.2 74 166-243 3-77 (307)
239 PRK01713 ornithine carbamoyltr 96.0 0.11 2.3E-06 46.5 11.5 113 103-242 117-231 (334)
240 cd05311 NAD_bind_2_malic_enz N 96.0 0.029 6.4E-07 47.3 7.5 75 161-243 21-104 (226)
241 TIGR00670 asp_carb_tr aspartat 96.0 0.11 2.4E-06 45.8 11.2 72 163-242 148-222 (301)
242 PRK00421 murC UDP-N-acetylmura 96.0 0.021 4.6E-07 53.1 7.2 38 163-201 5-43 (461)
243 PRK14620 NAD(P)H-dependent gly 96.0 0.03 6.4E-07 49.6 7.7 75 167-244 2-79 (326)
244 PRK06199 ornithine cyclodeamin 96.0 0.029 6.4E-07 51.0 7.7 74 165-243 155-230 (379)
245 TIGR01161 purK phosphoribosyla 95.9 0.012 2.6E-07 52.7 4.9 66 167-242 1-66 (352)
246 cd01079 NAD_bind_m-THF_DH NAD 95.9 0.034 7.3E-07 45.7 6.9 73 160-244 57-134 (197)
247 PRK11891 aspartate carbamoyltr 95.9 0.12 2.5E-06 47.7 11.2 73 162-242 238-314 (429)
248 PRK01438 murD UDP-N-acetylmura 95.8 0.026 5.6E-07 52.7 6.9 40 160-200 11-50 (480)
249 PLN02948 phosphoribosylaminoim 95.8 0.019 4.2E-07 55.0 6.1 73 161-243 18-90 (577)
250 PF00044 Gp_dh_N: Glyceraldehy 95.8 0.016 3.4E-07 45.9 4.6 33 167-199 2-34 (151)
251 COG0569 TrkA K+ transport syst 95.8 0.013 2.8E-07 49.4 4.4 72 166-243 1-73 (225)
252 PRK12439 NAD(P)H-dependent gly 95.8 0.036 7.7E-07 49.6 7.4 75 166-244 8-85 (341)
253 PF13460 NAD_binding_10: NADH( 95.8 0.017 3.8E-07 46.2 4.9 65 168-244 1-68 (183)
254 TIGR01763 MalateDH_bact malate 95.7 0.048 1E-06 48.1 8.0 75 166-244 2-77 (305)
255 PRK00683 murD UDP-N-acetylmura 95.7 0.018 3.9E-07 52.9 5.4 35 165-200 3-37 (418)
256 PRK05562 precorrin-2 dehydroge 95.6 0.055 1.2E-06 45.5 7.5 45 160-205 20-64 (223)
257 PRK07688 thiamine/molybdopteri 95.6 0.021 4.5E-07 51.2 5.3 37 161-198 20-57 (339)
258 PRK11579 putative oxidoreducta 95.6 0.052 1.1E-06 48.5 7.8 64 166-244 5-72 (346)
259 COG1004 Ugd Predicted UDP-gluc 95.6 0.032 6.9E-07 50.5 6.2 66 163-243 308-383 (414)
260 PRK01390 murD UDP-N-acetylmura 95.6 0.034 7.3E-07 51.7 6.7 38 162-200 6-43 (460)
261 cd05291 HicDH_like L-2-hydroxy 95.6 0.05 1.1E-06 47.9 7.4 73 166-243 1-75 (306)
262 TIGR00036 dapB dihydrodipicoli 95.5 0.05 1.1E-06 47.0 7.2 71 167-243 3-75 (266)
263 COG0057 GapA Glyceraldehyde-3- 95.5 0.03 6.5E-07 49.5 5.7 39 166-205 2-42 (335)
264 PTZ00345 glycerol-3-phosphate 95.5 0.071 1.5E-06 48.2 8.3 75 165-244 11-101 (365)
265 PRK11064 wecC UDP-N-acetyl-D-m 95.5 0.037 8.1E-07 50.9 6.5 69 160-244 315-394 (415)
266 PF00056 Ldh_1_N: lactate/mala 95.5 0.019 4.2E-07 44.7 4.0 72 167-243 2-76 (141)
267 COG1648 CysG Siroheme synthase 95.5 0.077 1.7E-06 44.3 7.8 43 161-204 8-50 (210)
268 PRK04308 murD UDP-N-acetylmura 95.4 0.061 1.3E-06 49.7 7.9 38 163-201 3-40 (445)
269 PRK09496 trkA potassium transp 95.4 0.02 4.2E-07 52.9 4.6 68 167-243 2-72 (453)
270 TIGR03026 NDP-sugDHase nucleot 95.4 0.048 1E-06 50.0 7.0 65 162-244 310-384 (411)
271 PLN02527 aspartate carbamoyltr 95.4 0.27 5.9E-06 43.4 11.3 72 163-242 149-224 (306)
272 PF02558 ApbA: Ketopantoate re 95.4 0.017 3.7E-07 45.0 3.4 73 168-244 1-75 (151)
273 PRK07806 short chain dehydroge 95.3 0.053 1.1E-06 45.5 6.6 37 163-200 4-41 (248)
274 PRK14030 glutamate dehydrogena 95.3 0.026 5.6E-07 52.2 5.0 38 161-199 224-269 (445)
275 PRK03803 murD UDP-N-acetylmura 95.3 0.052 1.1E-06 50.2 7.1 35 165-200 6-40 (448)
276 cd00757 ThiF_MoeB_HesA_family 95.3 0.049 1.1E-06 45.9 6.3 38 161-199 17-55 (228)
277 cd01339 LDH-like_MDH L-lactate 95.3 0.069 1.5E-06 46.9 7.4 72 168-243 1-73 (300)
278 PRK02255 putrescine carbamoylt 95.3 0.29 6.3E-06 43.8 11.5 77 162-242 151-228 (338)
279 PRK08818 prephenate dehydrogen 95.3 0.03 6.6E-07 50.7 5.1 36 164-199 3-39 (370)
280 PRK08644 thiamine biosynthesis 95.3 0.056 1.2E-06 45.1 6.4 37 161-198 24-61 (212)
281 PRK01368 murD UDP-N-acetylmura 95.2 0.055 1.2E-06 50.4 6.9 34 164-199 5-38 (454)
282 PRK06114 short chain dehydroge 95.2 0.062 1.3E-06 45.4 6.7 39 162-201 5-44 (254)
283 cd05293 LDH_1 A subgroup of L- 95.2 0.097 2.1E-06 46.3 7.9 72 166-243 4-78 (312)
284 COG0240 GpsA Glycerol-3-phosph 95.2 0.094 2E-06 46.5 7.7 71 166-244 2-79 (329)
285 PRK07576 short chain dehydroge 95.1 0.057 1.2E-06 46.1 6.2 40 161-201 5-45 (264)
286 COG0673 MviM Predicted dehydro 95.1 0.099 2.1E-06 46.2 7.7 66 166-244 4-75 (342)
287 PLN02272 glyceraldehyde-3-phos 95.0 0.029 6.2E-07 51.4 4.3 35 166-201 86-122 (421)
288 cd00650 LDH_MDH_like NAD-depen 95.0 0.077 1.7E-06 45.6 6.8 70 168-243 1-77 (263)
289 cd05292 LDH_2 A subgroup of L- 95.0 0.097 2.1E-06 46.2 7.5 72 167-244 2-75 (308)
290 PRK07523 gluconate 5-dehydroge 95.0 0.067 1.5E-06 45.1 6.3 39 162-201 7-46 (255)
291 PRK12749 quinate/shikimate deh 95.0 0.091 2E-06 46.0 7.2 38 162-200 121-159 (288)
292 COG0540 PyrB Aspartate carbamo 94.9 0.072 1.6E-06 46.7 6.2 72 163-242 156-230 (316)
293 cd05297 GH4_alpha_glucosidase_ 94.9 0.067 1.5E-06 49.4 6.4 75 167-243 2-81 (423)
294 PRK08217 fabG 3-ketoacyl-(acyl 94.9 0.066 1.4E-06 44.8 5.9 37 163-200 3-40 (253)
295 PLN02214 cinnamoyl-CoA reducta 94.9 0.096 2.1E-06 46.7 7.2 81 162-243 7-88 (342)
296 COG1023 Gnd Predicted 6-phosph 94.9 0.054 1.2E-06 45.9 5.2 35 166-201 1-35 (300)
297 PRK07326 short chain dehydroge 94.9 0.079 1.7E-06 44.0 6.3 38 163-201 4-42 (237)
298 PF05368 NmrA: NmrA-like famil 94.9 0.067 1.5E-06 44.7 5.9 70 168-243 1-71 (233)
299 PLN02819 lysine-ketoglutarate 94.9 0.052 1.1E-06 55.2 6.0 74 164-244 568-656 (1042)
300 PRK07200 aspartate/ornithine c 94.9 0.66 1.4E-05 42.4 12.6 77 162-242 184-268 (395)
301 PF04016 DUF364: Domain of unk 94.9 0.068 1.5E-06 42.0 5.4 61 163-243 9-69 (147)
302 TIGR02964 xanthine_xdhC xanthi 94.8 0.12 2.7E-06 44.1 7.4 34 166-200 101-134 (246)
303 TIGR01832 kduD 2-deoxy-D-gluco 94.8 0.092 2E-06 44.0 6.5 38 162-200 2-40 (248)
304 PRK12826 3-ketoacyl-(acyl-carr 94.8 0.083 1.8E-06 44.1 6.2 38 162-200 3-41 (251)
305 PRK06172 short chain dehydroge 94.8 0.068 1.5E-06 45.0 5.7 39 162-201 4-43 (253)
306 PLN02602 lactate dehydrogenase 94.8 0.17 3.6E-06 45.6 8.4 73 166-243 38-112 (350)
307 PTZ00079 NADP-specific glutama 94.7 0.049 1.1E-06 50.4 5.0 38 161-199 233-270 (454)
308 PLN02520 bifunctional 3-dehydr 94.7 0.1 2.2E-06 49.6 7.3 39 161-200 375-413 (529)
309 PLN00106 malate dehydrogenase 94.7 0.1 2.2E-06 46.4 6.9 73 163-243 16-93 (323)
310 PRK06949 short chain dehydroge 94.7 0.087 1.9E-06 44.3 6.3 39 162-201 6-45 (258)
311 PRK10637 cysG siroheme synthas 94.6 0.13 2.8E-06 48.0 7.6 72 161-243 8-79 (457)
312 COG0334 GdhA Glutamate dehydro 94.6 0.057 1.2E-06 49.1 4.9 38 162-200 204-241 (411)
313 PF00208 ELFV_dehydrog: Glutam 94.6 0.051 1.1E-06 46.4 4.4 33 162-195 29-61 (244)
314 cd01483 E1_enzyme_family Super 94.5 0.14 3.1E-06 39.5 6.6 31 167-198 1-32 (143)
315 PRK08589 short chain dehydroge 94.5 0.094 2E-06 44.9 6.0 36 162-198 3-39 (272)
316 TIGR01532 E4PD_g-proteo D-eryt 94.5 0.11 2.3E-06 46.3 6.5 34 167-201 1-38 (325)
317 PRK03806 murD UDP-N-acetylmura 94.5 0.14 3E-06 47.3 7.4 37 163-200 4-40 (438)
318 PRK07231 fabG 3-ketoacyl-(acyl 94.5 0.094 2E-06 43.8 5.8 39 162-201 2-41 (251)
319 TIGR01087 murD UDP-N-acetylmur 94.5 0.091 2E-06 48.4 6.2 34 167-201 1-34 (433)
320 PLN02342 ornithine carbamoyltr 94.4 0.56 1.2E-05 42.2 10.9 73 163-242 192-265 (348)
321 PRK05866 short chain dehydroge 94.4 0.11 2.5E-06 45.1 6.4 40 160-200 35-75 (293)
322 PF00070 Pyr_redox: Pyridine n 94.4 0.081 1.7E-06 36.7 4.4 34 167-201 1-34 (80)
323 PLN03209 translocon at the inn 94.4 0.09 1.9E-06 50.2 6.0 38 163-201 78-116 (576)
324 PRK07890 short chain dehydroge 94.4 0.1 2.2E-06 43.9 5.9 38 163-201 3-41 (258)
325 PF03720 UDPG_MGDP_dh_C: UDP-g 94.4 0.08 1.7E-06 39.1 4.6 57 176-244 18-74 (106)
326 PRK07533 enoyl-(acyl carrier p 94.4 0.12 2.6E-06 43.9 6.3 39 161-200 6-47 (258)
327 PRK09189 uroporphyrinogen-III 94.3 0.8 1.7E-05 38.6 11.3 53 16-68 1-54 (240)
328 PRK12937 short chain dehydroge 94.3 0.15 3.3E-06 42.5 6.7 37 163-200 3-40 (245)
329 PRK05600 thiamine biosynthesis 94.3 0.11 2.3E-06 47.2 6.1 54 139-198 20-74 (370)
330 PRK14804 ornithine carbamoyltr 94.3 0.7 1.5E-05 40.9 11.1 72 162-242 150-224 (311)
331 PRK05867 short chain dehydroge 94.3 0.13 2.7E-06 43.4 6.3 39 162-201 6-45 (253)
332 PTZ00325 malate dehydrogenase; 94.3 0.2 4.2E-06 44.6 7.6 74 162-244 5-84 (321)
333 PRK05708 2-dehydropantoate 2-r 94.3 0.087 1.9E-06 46.4 5.3 33 166-199 3-35 (305)
334 PRK05786 fabG 3-ketoacyl-(acyl 94.2 0.11 2.4E-06 43.1 5.8 38 163-201 3-41 (238)
335 COG0677 WecC UDP-N-acetyl-D-ma 94.2 0.079 1.7E-06 48.0 4.9 35 166-201 10-44 (436)
336 PRK08300 acetaldehyde dehydrog 94.2 0.3 6.6E-06 43.0 8.5 68 165-243 4-77 (302)
337 TIGR01761 thiaz-red thiazoliny 94.2 0.2 4.3E-06 45.0 7.5 64 166-243 4-69 (343)
338 PRK08628 short chain dehydroge 94.2 0.11 2.3E-06 43.9 5.7 39 162-201 4-43 (258)
339 PRK00856 pyrB aspartate carbam 94.2 0.67 1.5E-05 40.9 10.7 63 163-242 154-219 (305)
340 PRK12935 acetoacetyl-CoA reduc 94.2 0.18 4E-06 42.1 7.0 36 162-198 3-39 (247)
341 PRK14027 quinate/shikimate deh 94.1 0.23 4.9E-06 43.4 7.6 76 163-243 125-201 (283)
342 PRK05086 malate dehydrogenase; 94.1 0.14 3.1E-06 45.2 6.4 72 166-244 1-77 (312)
343 PRK05876 short chain dehydroge 94.1 0.13 2.8E-06 44.3 6.0 38 162-200 3-41 (275)
344 cd01485 E1-1_like Ubiquitin ac 94.0 0.19 4.1E-06 41.4 6.6 37 161-198 15-52 (198)
345 PF13478 XdhC_C: XdhC Rossmann 94.0 0.059 1.3E-06 41.8 3.4 32 168-200 1-32 (136)
346 cd05290 LDH_3 A subgroup of L- 94.0 0.18 3.9E-06 44.5 6.8 69 167-243 1-75 (307)
347 PRK06523 short chain dehydroge 94.0 0.084 1.8E-06 44.6 4.6 40 161-201 5-45 (260)
348 PRK08416 7-alpha-hydroxysteroi 94.0 0.16 3.6E-06 43.0 6.4 40 161-201 4-44 (260)
349 PRK07424 bifunctional sterol d 93.9 0.13 2.7E-06 47.3 5.8 78 161-243 174-252 (406)
350 PRK06701 short chain dehydroge 93.9 0.18 3.8E-06 43.8 6.6 39 161-200 42-81 (290)
351 PRK12939 short chain dehydroge 93.9 0.19 4E-06 42.0 6.5 38 162-200 4-42 (250)
352 PRK06057 short chain dehydroge 93.9 0.15 3.2E-06 43.1 5.9 38 163-201 5-43 (255)
353 PRK02705 murD UDP-N-acetylmura 93.9 0.16 3.5E-06 47.1 6.6 34 167-201 2-35 (459)
354 COG2344 AT-rich DNA-binding pr 93.9 0.13 2.9E-06 41.9 5.1 65 167-244 86-154 (211)
355 PRK12367 short chain dehydroge 93.8 0.14 2.9E-06 43.6 5.5 76 161-243 10-86 (245)
356 PRK07239 bifunctional uroporph 93.8 2.4 5.1E-05 38.4 13.9 148 11-198 7-179 (381)
357 TIGR02440 FadJ fatty oxidation 93.8 0.15 3.2E-06 50.2 6.4 36 166-201 305-340 (699)
358 cd01336 MDH_cytoplasmic_cytoso 93.8 0.2 4.3E-06 44.6 6.7 72 167-243 4-85 (325)
359 PRK05690 molybdopterin biosynt 93.8 0.076 1.6E-06 45.3 3.9 38 161-199 28-66 (245)
360 PRK12938 acetyacetyl-CoA reduc 93.7 0.19 4.1E-06 42.0 6.3 34 163-197 1-35 (246)
361 PRK08192 aspartate carbamoyltr 93.7 0.25 5.4E-06 44.2 7.2 74 162-242 156-232 (338)
362 PRK09186 flagellin modificatio 93.7 0.24 5.2E-06 41.6 6.9 38 163-201 2-40 (256)
363 PRK07792 fabG 3-ketoacyl-(acyl 93.7 0.29 6.2E-06 42.9 7.6 39 161-200 8-47 (306)
364 PRK06270 homoserine dehydrogen 93.7 0.3 6.5E-06 43.8 7.7 29 167-196 4-42 (341)
365 PRK07370 enoyl-(acyl carrier p 93.6 0.24 5.2E-06 42.1 6.6 36 162-198 3-41 (258)
366 PRK06935 2-deoxy-D-gluconate 3 93.6 0.19 4.2E-06 42.4 6.1 37 161-198 11-48 (258)
367 PRK07478 short chain dehydroge 93.6 0.23 5E-06 41.8 6.5 39 162-201 3-42 (254)
368 CHL00194 ycf39 Ycf39; Provisio 93.5 0.15 3.3E-06 44.7 5.6 66 167-242 2-70 (317)
369 TIGR03215 ac_ald_DH_ac acetald 93.5 0.39 8.5E-06 41.9 8.0 67 166-243 2-71 (285)
370 PRK15076 alpha-galactosidase; 93.5 0.23 4.9E-06 46.0 6.9 74 166-243 2-82 (431)
371 PRK08862 short chain dehydroge 93.5 0.24 5.1E-06 41.5 6.4 39 162-201 2-41 (227)
372 PRK07984 enoyl-(acyl carrier p 93.5 0.22 4.8E-06 42.6 6.4 36 163-199 4-42 (262)
373 PRK04148 hypothetical protein; 93.5 0.16 3.4E-06 39.4 4.8 36 164-201 16-51 (134)
374 PRK07035 short chain dehydroge 93.4 0.2 4.2E-06 42.1 5.8 38 162-200 5-43 (252)
375 TIGR03206 benzo_BadH 2-hydroxy 93.4 0.24 5.1E-06 41.4 6.3 38 163-201 1-39 (250)
376 cd00300 LDH_like L-lactate deh 93.4 0.36 7.8E-06 42.4 7.6 72 168-244 1-74 (300)
377 PRK13394 3-hydroxybutyrate deh 93.4 0.25 5.3E-06 41.6 6.4 38 163-201 5-43 (262)
378 PLN02353 probable UDP-glucose 93.3 0.28 6E-06 46.0 7.1 80 162-244 321-420 (473)
379 PRK06124 gluconate 5-dehydroge 93.3 0.26 5.7E-06 41.4 6.5 39 161-200 7-46 (256)
380 PLN02206 UDP-glucuronate decar 93.3 0.23 4.9E-06 46.2 6.4 38 161-199 115-153 (442)
381 PRK07774 short chain dehydroge 93.3 0.24 5.2E-06 41.4 6.1 38 162-200 3-41 (250)
382 PF03447 NAD_binding_3: Homose 93.2 0.17 3.7E-06 37.7 4.7 55 172-241 1-64 (117)
383 PRK15181 Vi polysaccharide bio 93.2 0.18 4E-06 44.9 5.6 38 162-200 12-50 (348)
384 cd01487 E1_ThiF_like E1_ThiF_l 93.2 0.26 5.7E-06 39.7 6.0 32 167-199 1-33 (174)
385 TIGR01142 purT phosphoribosylg 93.2 0.13 2.8E-06 46.4 4.7 34 167-201 1-34 (380)
386 PRK08085 gluconate 5-dehydroge 93.2 0.24 5.3E-06 41.6 6.1 39 162-201 6-45 (254)
387 PRK06194 hypothetical protein; 93.2 0.23 5.1E-06 42.6 6.1 38 162-200 3-41 (287)
388 PRK08339 short chain dehydroge 93.2 0.27 5.8E-06 41.9 6.4 39 162-201 5-44 (263)
389 PRK13814 pyrB aspartate carbam 93.2 0.99 2.1E-05 40.0 10.0 65 163-242 155-223 (310)
390 COG0169 AroE Shikimate 5-dehyd 93.2 0.34 7.3E-06 42.3 7.0 40 161-201 122-162 (283)
391 PRK05872 short chain dehydroge 93.1 0.24 5.1E-06 43.1 6.1 40 161-201 5-45 (296)
392 COG0686 Ald Alanine dehydrogen 93.1 0.12 2.7E-06 45.4 4.2 72 161-243 164-238 (371)
393 KOG0022 Alcohol dehydrogenase, 93.1 0.12 2.6E-06 45.6 4.0 38 163-201 191-229 (375)
394 PLN02427 UDP-apiose/xylose syn 93.1 0.19 4E-06 45.5 5.6 40 160-200 9-50 (386)
395 PF02629 CoA_binding: CoA bind 93.1 0.23 5.1E-06 35.8 5.0 64 166-244 4-70 (96)
396 smart00846 Gp_dh_N Glyceraldeh 93.1 0.16 3.5E-06 40.0 4.5 31 167-197 2-32 (149)
397 PF00899 ThiF: ThiF family; I 93.1 0.092 2E-06 40.3 3.0 34 165-199 2-36 (135)
398 PRK08936 glucose-1-dehydrogena 93.1 0.27 5.8E-06 41.6 6.2 38 162-200 4-42 (261)
399 PRK12742 oxidoreductase; Provi 93.1 0.41 8.8E-06 39.7 7.2 37 162-199 3-40 (237)
400 PRK06125 short chain dehydroge 93.1 0.31 6.7E-06 41.2 6.5 38 162-200 4-42 (259)
401 PRK12429 3-hydroxybutyrate deh 93.0 0.24 5.1E-06 41.5 5.8 38 163-201 2-40 (258)
402 COG1893 ApbA Ketopantoate redu 93.0 0.26 5.5E-06 43.6 6.1 75 166-244 1-75 (307)
403 PRK06603 enoyl-(acyl carrier p 93.0 0.38 8.2E-06 40.9 7.1 38 161-199 4-44 (260)
404 PRK15057 UDP-glucose 6-dehydro 93.0 0.32 6.9E-06 44.4 6.9 63 163-243 294-366 (388)
405 PRK11154 fadJ multifunctional 93.0 0.32 6.8E-06 47.9 7.3 36 166-201 310-345 (708)
406 PRK08415 enoyl-(acyl carrier p 93.0 0.23 5.1E-06 42.8 5.8 36 163-199 3-41 (274)
407 PF02254 TrkA_N: TrkA-N domain 93.0 0.14 3E-06 37.9 3.8 33 168-201 1-33 (116)
408 TIGR01759 MalateDH-SF1 malate 93.0 0.38 8.1E-06 42.8 7.1 72 167-243 5-86 (323)
409 PRK05565 fabG 3-ketoacyl-(acyl 93.0 0.31 6.7E-06 40.5 6.3 39 162-201 2-42 (247)
410 PLN02662 cinnamyl-alcohol dehy 92.9 0.34 7.4E-06 42.2 6.8 76 164-242 3-82 (322)
411 cd05312 NAD_bind_1_malic_enz N 92.9 0.93 2E-05 39.5 9.2 89 123-241 4-110 (279)
412 TIGR01850 argC N-acetyl-gamma- 92.9 0.36 7.8E-06 43.4 7.0 73 166-244 1-76 (346)
413 PLN02896 cinnamyl-alcohol dehy 92.9 0.25 5.4E-06 44.0 6.0 40 160-200 5-45 (353)
414 PRK07889 enoyl-(acyl carrier p 92.9 0.39 8.4E-06 40.8 6.9 37 162-199 4-43 (256)
415 TIGR02441 fa_ox_alpha_mit fatt 92.9 0.2 4.4E-06 49.5 5.7 35 166-201 336-370 (737)
416 PRK07060 short chain dehydroge 92.8 0.3 6.6E-06 40.6 6.1 39 162-201 6-45 (245)
417 TIGR02354 thiF_fam2 thiamine b 92.8 0.16 3.5E-06 42.0 4.3 37 161-198 17-54 (200)
418 PRK07666 fabG 3-ketoacyl-(acyl 92.8 0.33 7.2E-06 40.3 6.4 39 162-201 4-43 (239)
419 PF13380 CoA_binding_2: CoA bi 92.8 0.21 4.5E-06 37.5 4.6 59 166-244 1-63 (116)
420 cd05294 LDH-like_MDH_nadp A la 92.8 0.31 6.8E-06 43.0 6.4 33 166-199 1-36 (309)
421 PRK08159 enoyl-(acyl carrier p 92.8 0.32 7E-06 41.8 6.4 36 162-198 7-45 (272)
422 PRK06398 aldose dehydrogenase; 92.8 0.23 4.9E-06 42.2 5.4 38 162-200 3-41 (258)
423 PRK08690 enoyl-(acyl carrier p 92.8 0.38 8.3E-06 40.9 6.8 35 163-198 4-41 (261)
424 PRK08303 short chain dehydroge 92.8 0.34 7.3E-06 42.5 6.5 38 161-199 4-42 (305)
425 PRK06079 enoyl-(acyl carrier p 92.7 0.32 7E-06 41.1 6.2 36 163-199 5-43 (252)
426 PRK06997 enoyl-(acyl carrier p 92.7 0.37 8E-06 41.0 6.6 35 163-198 4-41 (260)
427 PRK12481 2-deoxy-D-gluconate 3 92.7 0.27 5.8E-06 41.5 5.6 38 162-200 5-43 (251)
428 PLN02695 GDP-D-mannose-3',5'-e 92.7 0.16 3.5E-06 45.8 4.5 35 164-199 20-55 (370)
429 PRK03659 glutathione-regulated 92.7 0.13 2.9E-06 49.6 4.1 36 165-201 400-435 (601)
430 PRK11730 fadB multifunctional 92.6 0.26 5.6E-06 48.6 6.1 35 166-201 314-348 (715)
431 TIGR02437 FadB fatty oxidation 92.6 0.24 5.3E-06 48.8 5.8 35 166-201 314-348 (714)
432 PRK07454 short chain dehydroge 92.6 0.35 7.7E-06 40.2 6.2 37 164-201 5-42 (241)
433 PRK05557 fabG 3-ketoacyl-(acyl 92.6 0.45 9.7E-06 39.4 6.8 38 163-201 3-41 (248)
434 PRK04663 murD UDP-N-acetylmura 92.5 0.43 9.4E-06 44.1 7.2 37 163-200 4-43 (438)
435 PRK06139 short chain dehydroge 92.5 0.26 5.6E-06 43.9 5.5 39 162-201 4-43 (330)
436 PRK05928 hemD uroporphyrinogen 92.5 1.8 4E-05 36.1 10.5 146 15-198 1-157 (249)
437 PRK07825 short chain dehydroge 92.5 0.32 6.9E-06 41.4 5.9 39 162-201 2-41 (273)
438 PRK06505 enoyl-(acyl carrier p 92.5 0.36 7.8E-06 41.4 6.3 36 163-199 5-43 (271)
439 PRK10206 putative oxidoreducta 92.5 0.46 9.9E-06 42.6 7.1 65 167-244 3-72 (344)
440 PRK08277 D-mannonate oxidoredu 92.5 0.38 8.3E-06 41.1 6.4 39 161-200 6-45 (278)
441 TIGR01758 MDH_euk_cyt malate d 92.5 0.21 4.6E-06 44.4 4.9 72 167-243 1-82 (324)
442 PRK06196 oxidoreductase; Provi 92.5 0.41 9E-06 41.9 6.7 39 162-201 23-62 (315)
443 PRK09880 L-idonate 5-dehydroge 92.5 0.47 1E-05 42.0 7.1 37 164-201 169-206 (343)
444 PRK07856 short chain dehydroge 92.4 0.23 4.9E-06 41.8 4.8 38 162-200 3-41 (252)
445 PRK12825 fabG 3-ketoacyl-(acyl 92.4 0.42 9E-06 39.6 6.4 38 163-201 4-42 (249)
446 PRK05875 short chain dehydroge 92.4 0.38 8.3E-06 41.0 6.2 38 163-201 5-43 (276)
447 PLN02657 3,8-divinyl protochlo 92.4 0.27 5.8E-06 44.8 5.5 39 161-200 56-95 (390)
448 PRK06182 short chain dehydroge 92.3 0.34 7.3E-06 41.4 5.9 37 164-201 2-39 (273)
449 PRK08213 gluconate 5-dehydroge 92.3 0.33 7.1E-06 41.0 5.8 39 161-200 8-47 (259)
450 cd00704 MDH Malate dehydrogena 92.3 0.4 8.7E-06 42.7 6.5 72 167-243 2-83 (323)
451 PRK14573 bifunctional D-alanyl 92.3 0.35 7.6E-06 48.3 6.7 64 167-243 6-70 (809)
452 PRK08642 fabG 3-ketoacyl-(acyl 92.3 0.43 9.3E-06 39.9 6.4 35 163-198 3-38 (253)
453 PRK06198 short chain dehydroge 92.2 0.32 6.9E-06 41.0 5.5 38 162-200 3-42 (260)
454 PRK12745 3-ketoacyl-(acyl-carr 92.2 0.36 7.8E-06 40.5 5.8 35 166-201 3-38 (256)
455 PRK07814 short chain dehydroge 92.2 0.34 7.4E-06 41.1 5.7 39 162-201 7-46 (263)
456 PRK09291 short chain dehydroge 92.1 0.41 8.9E-06 40.2 6.1 35 165-200 2-37 (257)
457 cd01338 MDH_choloroplast_like 92.1 0.35 7.5E-06 43.0 5.8 74 166-244 3-86 (322)
458 PRK08324 short chain dehydroge 92.1 0.31 6.8E-06 47.7 6.0 40 161-201 418-458 (681)
459 PRK06138 short chain dehydroge 92.1 0.46 9.9E-06 39.7 6.3 38 163-201 3-41 (252)
460 PRK08177 short chain dehydroge 92.1 0.47 1E-05 39.2 6.3 35 166-201 2-37 (225)
461 TIGR02622 CDP_4_6_dhtase CDP-g 92.1 0.43 9.3E-06 42.4 6.4 38 163-201 2-40 (349)
462 PRK12823 benD 1,6-dihydroxycyc 92.1 0.35 7.7E-06 40.7 5.6 37 162-199 5-42 (260)
463 TIGR03649 ergot_EASG ergot alk 92.0 0.34 7.3E-06 41.7 5.5 34 167-201 1-35 (285)
464 PRK09496 trkA potassium transp 92.0 0.23 5E-06 45.8 4.7 38 163-201 229-266 (453)
465 PRK14805 ornithine carbamoyltr 92.0 2.7 5.9E-05 37.0 11.2 75 163-242 145-220 (302)
466 PRK12859 3-ketoacyl-(acyl-carr 92.0 0.47 1E-05 40.1 6.3 35 162-197 3-40 (256)
467 PRK09242 tropinone reductase; 91.9 0.42 9.2E-06 40.2 5.9 38 162-200 6-44 (257)
468 PRK12748 3-ketoacyl-(acyl-carr 91.8 0.4 8.6E-06 40.4 5.7 36 162-198 2-40 (256)
469 PRK07102 short chain dehydroge 91.8 0.55 1.2E-05 39.2 6.5 35 166-201 2-37 (243)
470 PRK03562 glutathione-regulated 91.8 0.22 4.8E-06 48.2 4.6 36 165-201 400-435 (621)
471 PRK06392 homoserine dehydrogen 91.8 0.21 4.5E-06 44.6 4.0 32 167-198 2-40 (326)
472 PRK06128 oxidoreductase; Provi 91.8 0.43 9.3E-06 41.5 6.0 37 162-199 52-89 (300)
473 PLN02989 cinnamyl-alcohol dehy 91.8 0.39 8.5E-06 42.1 5.7 78 164-243 4-84 (325)
474 PRK08063 enoyl-(acyl carrier p 91.7 0.52 1.1E-05 39.3 6.3 36 163-199 2-39 (250)
475 PRK07453 protochlorophyllide o 91.7 0.49 1.1E-05 41.6 6.3 39 162-201 3-42 (322)
476 PRK12828 short chain dehydroge 91.7 0.3 6.5E-06 40.3 4.7 39 162-201 4-43 (239)
477 PRK06171 sorbitol-6-phosphate 91.7 0.23 4.9E-06 42.1 4.0 39 162-201 6-45 (266)
478 TIGR01772 MDH_euk_gproteo mala 91.7 0.43 9.3E-06 42.3 5.8 69 167-244 1-75 (312)
479 PRK09987 dTDP-4-dehydrorhamnos 91.7 0.42 9E-06 41.7 5.8 31 167-199 2-33 (299)
480 PRK06349 homoserine dehydrogen 91.7 0.53 1.1E-05 43.5 6.7 63 166-243 4-79 (426)
481 PRK06181 short chain dehydroge 91.7 0.49 1.1E-05 39.9 6.1 36 165-201 1-37 (263)
482 PRK05653 fabG 3-ketoacyl-(acyl 91.7 0.49 1.1E-05 39.1 6.0 38 163-201 3-41 (246)
483 TIGR01829 AcAcCoA_reduct aceto 91.6 0.55 1.2E-05 38.9 6.2 32 166-198 1-33 (242)
484 PRK08226 short chain dehydroge 91.6 0.47 1E-05 40.1 5.9 37 163-200 4-41 (263)
485 PRK06841 short chain dehydroge 91.6 0.31 6.6E-06 40.9 4.7 39 162-201 12-51 (255)
486 PRK00436 argC N-acetyl-gamma-g 91.6 0.44 9.5E-06 42.7 5.9 31 166-197 3-35 (343)
487 PLN02240 UDP-glucose 4-epimera 91.6 0.62 1.3E-05 41.2 6.9 37 162-199 2-39 (352)
488 PLN00198 anthocyanidin reducta 91.5 0.59 1.3E-05 41.2 6.7 36 163-199 7-43 (338)
489 PRK09288 purT phosphoribosylgl 91.5 0.48 1E-05 42.9 6.2 37 164-201 11-47 (395)
490 PRK08703 short chain dehydroge 91.5 0.34 7.4E-06 40.3 4.9 39 162-201 3-42 (239)
491 COG0565 LasT rRNA methylase [T 91.5 0.42 9E-06 40.6 5.3 65 172-243 14-79 (242)
492 PRK06463 fabG 3-ketoacyl-(acyl 91.5 0.52 1.1E-05 39.7 6.0 38 162-200 4-42 (255)
493 PRK06197 short chain dehydroge 91.4 0.3 6.6E-06 42.5 4.6 40 161-201 12-52 (306)
494 PRK07063 short chain dehydroge 91.3 0.6 1.3E-05 39.4 6.3 39 162-201 4-43 (260)
495 PRK08278 short chain dehydroge 91.3 0.71 1.5E-05 39.5 6.8 38 162-200 3-41 (273)
496 PRK06940 short chain dehydroge 91.3 0.58 1.3E-05 40.2 6.2 34 165-200 2-35 (275)
497 PRK07097 gluconate 5-dehydroge 91.2 0.65 1.4E-05 39.4 6.4 39 162-201 7-46 (265)
498 PRK08993 2-deoxy-D-gluconate 3 91.1 0.73 1.6E-05 38.8 6.6 39 161-200 6-45 (253)
499 PRK09135 pteridine reductase; 91.1 0.76 1.7E-05 38.1 6.6 37 163-200 4-41 (249)
500 TIGR03589 PseB UDP-N-acetylglu 91.1 0.56 1.2E-05 41.4 6.0 76 163-242 2-80 (324)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.6e-44 Score=324.56 Aligned_cols=244 Identities=93% Similarity=1.414 Sum_probs=196.0
Q ss_pred CCCceeeeeeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHH
Q 026023 1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA 80 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~ 80 (244)
|.||+.+.+-+|.++++|+++.++++....+.|++.+++++.....+...+.+++.+.+.+++|++++....++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~ 80 (386)
T PLN02306 1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS 80 (386)
T ss_pred CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence 89999999999999999999998876334677776666776443223336888999887545999998766789999999
Q ss_pred HhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccc
Q 026023 81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (244)
Q Consensus 81 ~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~ 160 (244)
++|++++|+|++.|+|+||||.+++.++||.|+|++|+++.+||||++++||++.|++..+++.+++|.|.+|.+....+
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 99976669999999999999999999999999999999999999999999999999999999999999998786543456
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.+|.|+||||+|+|+||+++|++++++|||+|++|||+++...+.+...+|.-....+.....+....+|+|+|++||+|
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 78999999999999999999999624999999999998754322211122111111111111222346899999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
++||
T Consensus 241 ~lh~ 244 (386)
T PLN02306 241 SLHP 244 (386)
T ss_pred EEeC
Confidence 9997
No 2
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=4.1e-42 Score=302.29 Aligned_cols=206 Identities=35% Similarity=0.535 Sum_probs=173.2
Q ss_pred CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (244)
Q Consensus 15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~ 94 (244)
++.++.+.++++. ..+.+.+. +++..+..+.. .+. ++.+.+. ++|++++....++++++++++|+| |+|++.|
T Consensus 2 k~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~-~~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~~ 74 (324)
T COG1052 2 KIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLT-PDT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATRS 74 (324)
T ss_pred CcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCc-cch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEec
Confidence 3457777887775 56777665 67766654422 223 6677777 499999987789999999999998 9999999
Q ss_pred cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCC-CCCcccccccCCCEEEEEcC
Q 026023 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGA 173 (244)
Q Consensus 95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~~~~~~l~g~tvgIvG~ 173 (244)
+||||||+++++++||.|+|+|++++++||||+++++|++.|++.++++.+++|.|..+ .+....+.+++|||+||+|+
T Consensus 75 ~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~ 154 (324)
T COG1052 75 AGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL 154 (324)
T ss_pred cccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999865 23334678999999999999
Q ss_pred ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+||+++|+++ ++|||+|+||+|+++++.++ ...+.+. +|+|++++||+|++||
T Consensus 155 GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~---------------~~~~~y~-~l~ell~~sDii~l~~ 208 (324)
T COG1052 155 GRIGQAVARRL-KGFGMKVLYYDRSPNPEAEK---------------ELGARYV-DLDELLAESDIISLHC 208 (324)
T ss_pred CHHHHHHHHHH-hcCCCEEEEECCCCChHHHh---------------hcCceec-cHHHHHHhCCEEEEeC
Confidence 99999999997 89999999999998743322 1123344 4999999999999998
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.7e-40 Score=293.08 Aligned_cols=206 Identities=31% Similarity=0.487 Sum_probs=170.2
Q ss_pred CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (244)
Q Consensus 15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~ 94 (244)
+++|+++.+++++ ..+.|++. +++..... ....+.+++.+.+.+ +|++++. ..++++++++++|+| |+|++.|
T Consensus 2 ~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~~-~~~~~~~~~~~~~~~-ad~li~~-~~~~~~~~l~~~p~L--k~I~~~g 74 (323)
T PRK15409 2 KPSVILYKALPDD-LLQRLEEH-FTVTQVAN-LSPETVEQHAAAFAE-AEGLLGS-GEKVDAALLEKMPKL--RAASTIS 74 (323)
T ss_pred CceEEEeCCCCHH-HHHHHHhc-CcEEEcCC-CCCCCHHHHHHHhcC-CeEEEEc-CCCCCHHHHhhCCCC--eEEEECc
Confidence 4789999887654 56777664 56654322 112367888888885 9999876 347999999999999 9999999
Q ss_pred cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (244)
Q Consensus 95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G 174 (244)
+|+||||.+++.++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|..+......+.+|.|||+||+|+|
T Consensus 75 ~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 75 VGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred eecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999754222224679999999999999
Q ss_pred hHHHHHHHHHhc-cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 175 RIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 175 ~IG~~vA~~la~-afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+||+++|+++ + +|||+|+||+|+.++..+. ..+. ...+|+|++++||+|++||
T Consensus 155 ~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 155 RIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIIL 208 (323)
T ss_pred HHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeC
Confidence 9999999997 8 9999999999986542211 0111 2358999999999999997
No 4
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=292.12 Aligned_cols=204 Identities=35% Similarity=0.471 Sum_probs=171.0
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (244)
Q Consensus 14 ~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~ 93 (244)
.++++++..++.++. .+.+.+. .++...... ..+.+++.+.+.+ +|++++ +..+++++.+..+|+| |+|++.
T Consensus 2 ~~~~vl~~~~~~~~~-~~~l~~~-~~~~~~~~~--~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~ 73 (324)
T COG0111 2 MMIKVLVTDPLAPDA-LEELLAA-YDVEVPDGP--DLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGRA 73 (324)
T ss_pred CcceeeccCccCHHH-HHHHHhc-ccccccccc--ccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence 467888888888764 5555554 333332222 3477788888885 999888 6678999999999999 999999
Q ss_pred ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (244)
Q Consensus 94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~ 173 (244)
|+|+||||.+++.++||.|+|+|+.|+.+||||+++++|++.|+++.+++.+++|.|++ ..+.+.+|.||||||+|+
T Consensus 74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~ 150 (324)
T COG0111 74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGL 150 (324)
T ss_pred cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999975 234567999999999999
Q ss_pred ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+||+++|+++ ++|||+|++|||+...+.+. ..++...++|+++|++||||++|+
T Consensus 151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~ 205 (324)
T COG0111 151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHL 205 (324)
T ss_pred CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcC
Confidence 99999999997 99999999999966553222 122345578999999999999996
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-40 Score=288.69 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=161.7
Q ss_pred EEEEeCC--CCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023 17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (244)
Q Consensus 17 ~ilv~~~--~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~ 94 (244)
||++..+ +.+. ..+.|++.+ ++..... .+++++.+.+.+ +|+++++ ..++++++++.+|+| |+|++.|
T Consensus 2 ki~~~~~~~~~~~-~~~~l~~~~-~~~~~~~----~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~ 71 (311)
T PRK08410 2 KIVILDAKTLGDK-DLSVFEEFG-DFQIYPT----TSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICITA 71 (311)
T ss_pred eEEEEecCCCChh-hHHHHhhCc-eEEEeCC----CCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence 4555543 3333 356676653 6654321 256788888885 9999886 457999999999999 9999999
Q ss_pred cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCc---ccccccCCCEEEEE
Q 026023 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI 171 (244)
Q Consensus 95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~---~~~~~l~g~tvgIv 171 (244)
+|+||+|+++++++||.|+|+||+++.+||||+++++|+++|++..+++.+++|.|..+.... ..+.+|.||||||+
T Consensus 72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi 151 (311)
T PRK08410 72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII 151 (311)
T ss_pred cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999997432111 12468999999999
Q ss_pred cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+|+||+++|+++ ++|||+|++|||+.+.. +. . ....+|+|++++||+|++||
T Consensus 152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~-~~---------------~---~~~~~l~ell~~sDvv~lh~ 204 (311)
T PRK08410 152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNK-NE---------------E---YERVSLEELLKTSDIISIHA 204 (311)
T ss_pred CCCHHHHHHHHHH-hhcCCEEEEECCCcccc-cc---------------C---ceeecHHHHhhcCCEEEEeC
Confidence 9999999999997 99999999999975431 00 1 12468999999999999997
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-40 Score=298.38 Aligned_cols=207 Identities=25% Similarity=0.317 Sum_probs=175.0
Q ss_pred eeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCC
Q 026023 9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG 87 (244)
Q Consensus 9 ~~~~~~~~~ilv~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~ 87 (244)
++.|+.||+|+++.++.+. ..+.+++.++ ++..... ..+++++.+.+.+ +|++++....++++++++.+|+|
T Consensus 4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~~---~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L-- 76 (409)
T PRK11790 4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHKG---ALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL-- 76 (409)
T ss_pred CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECCC---CCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--
Confidence 4568888999999877654 4677777666 6654421 3477888888885 99987765667999999999999
Q ss_pred cEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 026023 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (244)
Q Consensus 88 k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~t 167 (244)
|||++.|+|+||||.++++++||.|+|+||+++.+||||+++++|++.|++..+.+.+++|.|.++. ..+.+|.|||
T Consensus 77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gkt 153 (409)
T PRK11790 77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKT 153 (409)
T ss_pred eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999997432 3467899999
Q ss_pred EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|||+|+|+||+++|+++ ++|||+|++|||++... . ..+....+|+|++++||+|++||
T Consensus 154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~-~-----------------~~~~~~~~l~ell~~sDiVslh~ 211 (409)
T PRK11790 154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLP-L-----------------GNARQVGSLEELLAQSDVVSLHV 211 (409)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEECCCcccc-c-----------------CCceecCCHHHHHhhCCEEEEcC
Confidence 99999999999999997 99999999999875321 0 01223468999999999999997
No 7
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=8.8e-39 Score=283.59 Aligned_cols=207 Identities=39% Similarity=0.612 Sum_probs=169.7
Q ss_pred CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (244)
Q Consensus 15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~ 94 (244)
+++|+++.++++. ..+.+++. +++..... ....+.+++.+.+.+ +|++++....++++++++++|+| |||++.|
T Consensus 2 ~~kil~~~~~~~~-~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~~ 75 (333)
T PRK13243 2 KPKVFITREIPEN-GIEMLEEH-FEVEVWED-EREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANYA 75 (333)
T ss_pred CceEEEECCCCHH-HHHHHhcC-ceEEEecC-CCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEecC
Confidence 3678888776554 45667654 46654322 223467888888885 99998875568999999999999 9999999
Q ss_pred cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCC----CCCcccccccCCCEEEE
Q 026023 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW----LPNLFVGNLLKGQTVGV 170 (244)
Q Consensus 95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~----~~~~~~~~~l~g~tvgI 170 (244)
+|+||+|.+++.++||.|+|++|+++.+||||++++||++.|+++.+++.+++|.|.+. .+....+.+|.||||||
T Consensus 76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999742 22122467899999999
Q ss_pred EcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 171 vG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+||+.+|++| ++|||+|++|||++++.... . .+. ...++++++++||+|++|+
T Consensus 156 iG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~~~-~~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 156 IGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E------------LGA-EYRPLEELLRESDFVSLHV 212 (333)
T ss_pred ECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H------------cCC-EecCHHHHHhhCCEEEEeC
Confidence 99999999999997 99999999999987542111 0 111 2358999999999999996
No 8
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=8e-39 Score=282.11 Aligned_cols=185 Identities=26% Similarity=0.319 Sum_probs=155.8
Q ss_pred HHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCC
Q 026023 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109 (244)
Q Consensus 30 ~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~g 109 (244)
.+.+++...++..... .+.+++.+.+.+ +|+++++ ..++++++++++|+| |||++.|+|+||+|.+++.++|
T Consensus 18 ~~~l~~~~~~~~~~~~----~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g 89 (317)
T PRK06487 18 LSPLEQAFDELQLHDA----TTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG 89 (317)
T ss_pred hhHHHhhCCeEEEecC----CCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence 3556544345544322 357888888885 9998876 457999999999999 9999999999999999999999
Q ss_pred cEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEcCChHHHHHHHHHhc
Q 026023 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (244)
Q Consensus 110 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~---~~~~~~l~g~tvgIvG~G~IG~~vA~~la~ 186 (244)
|.|+|++|+++.+||||++++||++.|++..+.+.+++|.|..+... ...+.+|.||||||+|+|+||+++|+++ +
T Consensus 90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~ 168 (317)
T PRK06487 90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E 168 (317)
T ss_pred CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999999755321 1234689999999999999999999997 9
Q ss_pred cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 187 afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|||+|++|+|+.++.. ....+|+|++++||+|++||
T Consensus 169 ~fgm~V~~~~~~~~~~~---------------------~~~~~l~ell~~sDiv~l~l 205 (317)
T PRK06487 169 AFGMRVLIGQLPGRPAR---------------------PDRLPLDELLPQVDALTLHC 205 (317)
T ss_pred hCCCEEEEECCCCCccc---------------------ccccCHHHHHHhCCEEEECC
Confidence 99999999998754310 01358999999999999997
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-38 Score=279.69 Aligned_cols=170 Identities=26% Similarity=0.338 Sum_probs=147.7
Q ss_pred CCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHH
Q 026023 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (244)
Q Consensus 50 ~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~ 129 (244)
.+++++.+.+.+ +|++++. ..++++++++++|+| |||++.|+|+||||.+++.++||.|+|+||+++.+||||+++
T Consensus 33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~ 108 (314)
T PRK06932 33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence 367888999985 9988875 457999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhChHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHH
Q 026023 130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (244)
Q Consensus 130 ~~L~~~R~~~~~~~~~~~~~w~~~~~~---~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~ 206 (244)
++|++.|+++.+.+.+++|.|..+... ...+.+|.||||||+|+|+||+++|+++ ++|||+|++|+++.....
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~--- 184 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC--- 184 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence 999999999999999999999753221 1234689999999999999999999997 999999999998643210
Q ss_pred HhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
. ....+|+|+|++||+|++||
T Consensus 185 --------------~---~~~~~l~ell~~sDiv~l~~ 205 (314)
T PRK06932 185 --------------R---EGYTPFEEVLKQADIVTLHC 205 (314)
T ss_pred --------------c---cccCCHHHHHHhCCEEEEcC
Confidence 0 02358999999999999997
No 10
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-38 Score=270.72 Aligned_cols=203 Identities=31% Similarity=0.463 Sum_probs=177.4
Q ss_pred CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (244)
Q Consensus 15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~ 94 (244)
+-+||++.++... .++.|++.+..+++... .+.||+.+.+++ +|++++++.+++++++|+...+ ++|+|.+.+
T Consensus 6 ~~~il~~e~~~~~-~~~~l~~~g~~v~~~~~----~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag 78 (406)
T KOG0068|consen 6 MRKILVAESLDQA-CIEILKDNGYQVEFKKN----LSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAG 78 (406)
T ss_pred cceEEEecccchH-HHHHHHhcCceEEEecc----CCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecc
Confidence 3379999998886 58999999888876543 367799999995 9999999999999999995433 459999999
Q ss_pred cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (244)
Q Consensus 95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G 174 (244)
+|+||+|++++.++||.|.|+|.+|+.++||++++++++++|++++....+++|+|++ ..+.+.+|+|||+||+|+|
T Consensus 79 ~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~G 155 (406)
T KOG0068|consen 79 IGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLG 155 (406)
T ss_pred cCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999874 3356889999999999999
Q ss_pred hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 175 ~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+||+++|+++ ++|||+|++||+.......+ .+ .....+|+|+|+.||||++||
T Consensus 156 rIGseVA~r~-k~~gm~vI~~dpi~~~~~~~---------------a~-gvq~vsl~Eil~~ADFitlH~ 208 (406)
T KOG0068|consen 156 RIGSEVAVRA-KAMGMHVIGYDPITPMALAE---------------AF-GVQLVSLEEILPKADFITLHV 208 (406)
T ss_pred cchHHHHHHH-HhcCceEEeecCCCchHHHH---------------hc-cceeeeHHHHHhhcCEEEEcc
Confidence 9999999996 99999999999987653222 11 124569999999999999997
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-37 Score=276.18 Aligned_cols=194 Identities=21% Similarity=0.210 Sum_probs=162.2
Q ss_pred HHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEEEEcccCCCccChHHHhh
Q 026023 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107 (244)
Q Consensus 30 ~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~ 107 (244)
.+.|++.++++....+. ..+++++.+.+.+ +|++++.. +.+++++.++++|+| |||++.|+|+||||++++.+
T Consensus 68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~ 142 (386)
T PLN03139 68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA 142 (386)
T ss_pred HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence 45567777888765433 3477888999985 99998853 246999999999999 99999999999999999999
Q ss_pred CCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhcc
Q 026023 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (244)
Q Consensus 108 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~a 187 (244)
+||.|+|++|+|+.+||||++++||++.|++..+++.+++|.|... .....+.+|.|+||||+|+|+||+++|++| ++
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a 220 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP 220 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999999731 111345789999999999999999999998 89
Q ss_pred CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 188 fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|||+|++|||+..+.... . ..++...++++|++++||+|++||
T Consensus 221 fG~~V~~~d~~~~~~~~~--~------------~~g~~~~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 221 FNCNLLYHDRLKMDPELE--K------------ETGAKFEEDLDAMLPKCDVVVINT 263 (386)
T ss_pred CCCEEEEECCCCcchhhH--h------------hcCceecCCHHHHHhhCCEEEEeC
Confidence 999999999986432111 0 112233468999999999999997
No 12
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=4.7e-37 Score=287.23 Aligned_cols=201 Identities=33% Similarity=0.483 Sum_probs=168.8
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccC
Q 026023 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (244)
Q Consensus 17 ~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG 96 (244)
+|+++.++.+. ..+.|++.++++.... ..+++++.+.+++ +|++++++..++++++++++|+| |||++.|+|
T Consensus 1 ~vli~~~~~~~-~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADPISPD-GIDILEDVGVEVDVQT----GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG 72 (525)
T ss_pred CEEEeCCCCHH-HHHHHHhcCcEEEeCC----CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence 46777776654 5677776666776421 2367889999985 99998876678999999999999 999999999
Q ss_pred CCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH
Q 026023 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (244)
Q Consensus 97 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I 176 (244)
+||+|++++.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+. .+.+.+|.||||||+|+|+|
T Consensus 73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999999742 23467899999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 177 G~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+++|++| ++|||+|++|||+...+... ..++...++++|++++||+|++||
T Consensus 150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 150 GSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHT 201 (525)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEcc
Confidence 99999997 99999999999975432111 112223458999999999999997
No 13
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-36 Score=272.60 Aligned_cols=193 Identities=25% Similarity=0.270 Sum_probs=161.7
Q ss_pred HHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhC
Q 026023 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108 (244)
Q Consensus 31 ~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~ 108 (244)
+.|++.++++.+..+ ...+++++.+.+.+ +|++++.. ..+++++.++++|+| |||++.|+|+||+|++++.++
T Consensus 62 ~~l~~~g~e~~~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~ 136 (385)
T PRK07574 62 KFLEERGHELVVTSD--KDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH 136 (385)
T ss_pred HHHHhcCcEEEEeCC--CCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence 557777788876432 23477888888985 99998853 357999999999999 999999999999999999999
Q ss_pred CcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccC
Q 026023 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (244)
Q Consensus 109 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~af 188 (244)
||.|+|++++|+.+||||+++++|++.|++..+++.+++|.|..+.. ...+.+|.|+||||+|+|+||+.+|++| ++|
T Consensus 137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f 214 (385)
T PRK07574 137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF 214 (385)
T ss_pred CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence 99999999999999999999999999999999999999999975321 1235789999999999999999999998 999
Q ss_pred CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 189 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
||+|++|||+..+.... . ..++....+++|++++||+|++||
T Consensus 215 G~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 215 DVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred CCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcC
Confidence 99999999987432111 0 112333568999999999999997
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-36 Score=283.72 Aligned_cols=201 Identities=32% Similarity=0.465 Sum_probs=168.0
Q ss_pred eEEEEeCCCCchHHHHHHHhC-CCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023 16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (244)
Q Consensus 16 ~~ilv~~~~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~ 94 (244)
|+|+++.++++. ..+.|++. ++++... . ..+.+++.+.+++ +|++++++..++++++++++|+| |||++.|
T Consensus 1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG 72 (526)
T ss_pred CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence 468888777654 46677665 4566532 1 2367888888985 99998876668999999999999 9999999
Q ss_pred cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (244)
Q Consensus 95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G 174 (244)
+|+||+|.+++.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.++ .+.+.+|.||||||+|+|
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G 149 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG 149 (526)
T ss_pred cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999742 134678999999999999
Q ss_pred hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 175 ~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+||+.+|++| ++|||+|++|||+...+... ..++.. .+++|++++||+|++||
T Consensus 150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~l 202 (526)
T PRK13581 150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHT 202 (526)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEcc
Confidence 9999999997 99999999999976432111 011222 38999999999999996
No 15
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-36 Score=268.31 Aligned_cols=207 Identities=23% Similarity=0.429 Sum_probs=165.3
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (244)
Q Consensus 14 ~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~ 93 (244)
.+++++++.+.+.+ +.+.+.+. ++++...... ..+ +|..+.+.+ +|++++....++++++++++|++++|+|++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~-~e~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~ 76 (332)
T PRK08605 2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALT-DDNVEEVEG-FDGLSLSQQIPLSEAIYKLLNELGIKQIAQR 76 (332)
T ss_pred cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCC-HHHHHHhcC-CCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence 34667777765544 56666554 2333222111 234 455677774 9999887667899999999998555999999
Q ss_pred ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (244)
Q Consensus 94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~ 173 (244)
|+|+||+|+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|. |... ..+.+|.|++|||||+
T Consensus 77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~ 154 (332)
T PRK08605 77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT 154 (332)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999985 6442 2467899999999999
Q ss_pred ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+||+.+|++|+++|||+|++||+++....... .....++++++++||+|++|+
T Consensus 155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~-----------------~~~~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATY-----------------VDYKDTIEEAVEGADIVTLHM 208 (332)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCccHhHHhh-----------------ccccCCHHHHHHhCCEEEEeC
Confidence 999999999974699999999999875432110 112358999999999999986
No 16
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1e-35 Score=265.16 Aligned_cols=216 Identities=23% Similarity=0.237 Sum_probs=165.0
Q ss_pred eCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccC
Q 026023 10 WNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAG 86 (244)
Q Consensus 10 ~~~~~~~~ilv~~~~~~~--~~-~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~ 86 (244)
-|.+.+++|+++.+..++ .+ .+.+++.+ +..+.. .+.+++.+.+.+ +|+++++ ..++++++++.+|+|
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~e~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L- 83 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYP--FIQVDA----VAREDVPDVIAN-YDICVPK-MMRLDADIIARASQM- 83 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCC--eeEecC----CCHHHHHHHhcC-CcEEEEC-CCCCCHHHHhcCCCc-
Confidence 345677889999876553 12 34443333 222221 366788888885 9998876 447999999999999
Q ss_pred CcEEEEcccCCCccChHHHhhCCcEEEecCCC---CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccccccc
Q 026023 87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL 163 (244)
Q Consensus 87 ~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l 163 (244)
|||++.++|+||+|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+.+.++++.|.. ..+.+|
T Consensus 84 -k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l 157 (347)
T PLN02928 84 -KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTL 157 (347)
T ss_pred -eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCC
Confidence 9999999999999999999999999999985 7899999999999999999999999999999853 245789
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.|+|+||+|+|+||+.+|++| ++|||+|++|+|+.+........ + ................+|+|++++||+|++|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLL-I--PNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhc-c--ccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 999999999999999999997 99999999999985432111000 0 0000000000011346999999999999999
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
|
T Consensus 234 l 234 (347)
T PLN02928 234 C 234 (347)
T ss_pred C
Confidence 6
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-35 Score=263.28 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=162.8
Q ss_pred CeEEEEeCCCCch-HHH-HHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEE
Q 026023 15 KYRVVSTKPMPGT-RWI-NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92 (244)
Q Consensus 15 ~~~ilv~~~~~~~-~~~-~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~ 92 (244)
||||++.+..+.+ ++. +.+++.++++.... . ..+++ ..+.+.+ +|+++++...++++++++++|+.++|+|++
T Consensus 1 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~~~~-~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~ 75 (330)
T PRK12480 1 MTKIMFFGTRDYEKEMALNWGKKNNVEVTTSK--E-LLSSA-TVDQLKD-YDGVTTMQFGKLENDVYPKLESYGIKQIAQ 75 (330)
T ss_pred CcEEEEEeCcHHHHHHHHHHHHhcCeEEEEcC--C-CCCHH-HHHHhCC-CCEEEEecCCCCCHHHHHhhhhcCceEEEe
Confidence 4788776543332 333 33455555554322 2 34555 4777874 999998766689999999998323399999
Q ss_pred cccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 026023 93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172 (244)
Q Consensus 93 ~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG 172 (244)
.++|+||+|.+++.++||.|+|+|++++++||||+++++|++.|+++.+.+.+++|.|. |... ..+.+|.|++|||+|
T Consensus 76 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG 153 (330)
T PRK12480 76 RTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIG 153 (330)
T ss_pred cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999875 5332 246789999999999
Q ss_pred CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 173 ~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+||+.+|++| ++|||+|++||+++.... .+ .....++++++++||+|++|+
T Consensus 154 ~G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~-~~-----------------~~~~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 154 TGRIGAATAKIY-AGFGATITAYDAYPNKDL-DF-----------------LTYKDSVKEAIKDADIISLHV 206 (330)
T ss_pred CCHHHHHHHHHH-HhCCCEEEEEeCChhHhh-hh-----------------hhccCCHHHHHhcCCEEEEeC
Confidence 999999999998 899999999999875421 10 112358999999999999996
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=5.7e-34 Score=248.64 Aligned_cols=176 Identities=36% Similarity=0.559 Sum_probs=149.3
Q ss_pred CCHHHHHHHhcCCccEEEeccCccccHHHHHHh-hccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHH
Q 026023 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA 128 (244)
Q Consensus 50 ~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~-p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l 128 (244)
++..++.+.+.+...++.+......+.+.+... |++ |+|.++|+|+||||+++|++|||+|+|+|+.+..+|||+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~ 126 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAV 126 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHH
Confidence 455556666665344455555567788888877 888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh
Q 026023 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208 (244)
Q Consensus 129 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~ 208 (244)
+++|.+.|++..+++++++|.| .|....+.+..+.||||||+|+|+||+.+|++| ++|||.+.|++|+.....+. .+
T Consensus 127 ~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y~~r~~~~~~~~-~~ 203 (336)
T KOG0069|consen 127 SLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILYHSRTQLPPEEA-YE 203 (336)
T ss_pred HHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeeeecccCCchhhH-HH
Confidence 9999999999999999999999 687777788999999999999999999999998 99999999999987643222 11
Q ss_pred hhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+ ....+++|++++||+||+||
T Consensus 204 -~~-------------~~~~d~~~~~~~sD~ivv~~ 225 (336)
T KOG0069|consen 204 -YY-------------AEFVDIEELLANSDVIVVNC 225 (336)
T ss_pred -hc-------------ccccCHHHHHhhCCEEEEec
Confidence 10 11469999999999999998
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.2e-32 Score=246.38 Aligned_cols=175 Identities=23% Similarity=0.304 Sum_probs=141.9
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (244)
Q Consensus 16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a 95 (244)
|||++...++. ..+.+.+. .++.+... ...+.++ ++ ++|++++++.+++++++++ .|+| |||++.++
T Consensus 1 mkIl~d~~~~~--~~~~~~~~-~ev~~~~~--~~~~~~~----l~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~ 67 (378)
T PRK15438 1 MKILVDENMPY--ARELFSRL-GEVKAVPG--RPIPVAQ----LA-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA 67 (378)
T ss_pred CEEEEeCCcch--HHHHHhhc-CcEEEeCC--CCCCHHH----hC-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence 57888876653 24556554 37766532 2334444 44 5999998776789999986 6888 99999999
Q ss_pred CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (244)
Q Consensus 96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~ 175 (244)
|+||||.+++.++||.|+|+||+|+.+||||+++++|++.|+. +.+|.|+||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~ 126 (378)
T PRK15438 68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN 126 (378)
T ss_pred cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999861 2369999999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
||+++|++| ++|||+|++|||..... .. ...+.+|++++++||+|++|+
T Consensus 127 IG~~vA~~l-~a~G~~V~~~dp~~~~~-~~------------------~~~~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 127 VGRRLQARL-EALGIKTLLCDPPRADR-GD------------------EGDFRSLDELVQEADILTFHT 175 (378)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc-cc------------------ccccCCHHHHHhhCCEEEEeC
Confidence 999999997 99999999999864321 00 012468999999999999996
No 20
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.98 E-value=1.6e-31 Score=233.72 Aligned_cols=148 Identities=22% Similarity=0.358 Sum_probs=125.0
Q ss_pred CccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHH
Q 026023 62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141 (244)
Q Consensus 62 ~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~ 141 (244)
++|+++.... +...|+| |||++.++|+||+|.+++.++++.++| ++.++.+||||+++++|++.|+++.+
T Consensus 34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence 4888865422 1235777 999999999999999999998887777 58889999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC
Q 026023 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221 (244)
Q Consensus 142 ~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (244)
.+.+++|.|... .+.+|+||||||+|+|+||+++|+++ ++|||+|++|+|+..+. +
T Consensus 104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~--- 159 (303)
T PRK06436 104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------G--- 159 (303)
T ss_pred HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------C---
Confidence 999999998742 34689999999999999999999997 99999999999985431 0
Q ss_pred ccccccCCHHHHhhhCCEEEEeC
Q 026023 222 VTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 222 ~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
.. ....++++++++||+|++||
T Consensus 160 ~~-~~~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 160 IS-SIYMEPEDIMKKSDFVLISL 181 (303)
T ss_pred cc-cccCCHHHHHhhCCEEEECC
Confidence 00 01358999999999999996
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.98 E-value=2e-31 Score=239.11 Aligned_cols=175 Identities=19% Similarity=0.297 Sum_probs=141.1
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (244)
Q Consensus 16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a 95 (244)
|||++...++.. .+.+.+.+ ++.+.... ..+. +.++ ++|++++++.+++++++++ .|+| |||++.++
T Consensus 1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~~~--~~~~----~~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~ 67 (381)
T PRK00257 1 MKIVADENIPLL--DAFFAGFG-EIRRLPGR--AFDR----AAVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI 67 (381)
T ss_pred CEEEEecCchhH--HHHHhhCC-cEEEcCCc--ccCH----HHhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence 688888877532 34455543 66654321 2233 3455 5999988877789999997 5888 99999999
Q ss_pred CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (244)
Q Consensus 96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~ 175 (244)
|+||+|.+++.++||.|+|+||+|+.+||||+++++|++.|+ .+.++.|+||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~ 126 (381)
T PRK00257 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH 126 (381)
T ss_pred cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence 999999999999999999999999999999999999999875 12469999999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
||+++|+++ ++|||+|++|||..... + ....+.+|+|++++||+|++|+
T Consensus 127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~------------------~~~~~~~l~ell~~aDiV~lh~ 175 (381)
T PRK00257 127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E------------------GDGDFVSLERILEECDVISLHT 175 (381)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc-c------------------cCccccCHHHHHhhCCEEEEeC
Confidence 999999997 99999999999864321 0 0113468999999999999996
No 22
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.97 E-value=7.6e-31 Score=230.65 Aligned_cols=188 Identities=17% Similarity=0.197 Sum_probs=144.3
Q ss_pred EEEEeCCC-CchHHHHHHHhC--CCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023 17 RVVSTKPM-PGTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (244)
Q Consensus 17 ~ilv~~~~-~~~~~~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~ 93 (244)
.+++..+. ....|.+.|++. ++++..+... + .. ++|+++++.. +.+.++ .|+| |||++.
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~-------~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~ 63 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKSG-------D----ND-PADYALVWHP---PVEMLA-GRDL--KAVFAL 63 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCCC-------C----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEc
Confidence 56666554 444477888775 4455432221 1 13 5999998742 456665 5888 999999
Q ss_pred ccCCCccChHH-----HhhCCcEEEecCC-CCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 026023 94 AVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (244)
Q Consensus 94 ~aG~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~t 167 (244)
|+|+|++|... +.++||.|+|+++ .++.+||||+++++|++.|+++.+.+.++++.|... ...++.|+|
T Consensus 64 ~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~t 138 (312)
T PRK15469 64 GAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFT 138 (312)
T ss_pred ccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCE
Confidence 99999998332 4458999999864 689999999999999999999999999999998642 235799999
Q ss_pred EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|||+|+|+||+.+|++| ++|||+|++|+++++... . ... ....++|++++++||+|++|+
T Consensus 139 vgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~-~-------------~~~--~~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 139 IGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP-G-------------VQS--FAGREELSAFLSQTRVLINLL 198 (312)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC-C-------------cee--ecccccHHHHHhcCCEEEECC
Confidence 99999999999999998 899999999999765410 0 001 113468999999999999996
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.86 E-value=8.1e-22 Score=160.49 Aligned_cols=99 Identities=37% Similarity=0.480 Sum_probs=78.9
Q ss_pred HHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHH
Q 026023 128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207 (244)
Q Consensus 128 l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~ 207 (244)
++++|++.|+++.+.+.++++.| +......+.++.|+||||+|+|+||+++|+++ ++|||+|++|||+.++....
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-- 75 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-- 75 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence 68999999999999999999998 12223467899999999999999999999997 99999999999998864311
Q ss_pred hhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
.. . .....+++|++++||+|++||
T Consensus 76 ~~------------~-~~~~~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 76 DE------------F-GVEYVSLDELLAQADIVSLHL 99 (178)
T ss_dssp HH------------T-TEEESSHHHHHHH-SEEEE-S
T ss_pred cc------------c-cceeeehhhhcchhhhhhhhh
Confidence 11 1 114569999999999999997
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.80 E-value=7.6e-20 Score=159.20 Aligned_cols=177 Identities=26% Similarity=0.366 Sum_probs=150.6
Q ss_pred CCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHH
Q 026023 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (244)
Q Consensus 50 ~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~ 129 (244)
.+..|+.+++-+++-+.+.+.+..++++.+++++.| |++...+.|+|++|+.++.+.||.+||.|+..-+.+|+.++.
T Consensus 61 qstqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~ 138 (435)
T KOG0067|consen 61 QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLC 138 (435)
T ss_pred cchHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHH
Confidence 477888887655566666776778999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhChHHHHHHHHcCCCCCCCCC----cccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHH
Q 026023 130 LSLAAARRIVEADEFMRAGLYDGWLPN----LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205 (244)
Q Consensus 130 ~~L~~~R~~~~~~~~~~~~~w~~~~~~----~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~ 205 (244)
.+|.++|+.....+..++|.|.+-... ......++|.++|++|+|++|+.++.+ |++||..|+.||++...-.+.
T Consensus 139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~ 217 (435)
T KOG0067|consen 139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK 217 (435)
T ss_pred HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh
Confidence 999999999999999999998542111 112356899999999999999999999 699999999999998764443
Q ss_pred HHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
++ +.....+|.+++.++|.+++||
T Consensus 218 ~l---------------g~~rVytlqd~~~~sd~~S~hc 241 (435)
T KOG0067|consen 218 SL---------------GLQRVYTLQDLLYQSDCVSLHC 241 (435)
T ss_pred hc---------------ccceecccchhhhhccceeeec
Confidence 22 2233457999999999999998
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.78 E-value=2.1e-18 Score=133.84 Aligned_cols=101 Identities=32% Similarity=0.441 Sum_probs=86.9
Q ss_pred EEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023 18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (244)
Q Consensus 18 ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~ 97 (244)
||++.+++++ .++.|++ ++++.+.. ..+.+++.+.+++ +|+++++...++++++++.+|+| |||++.|+|+
T Consensus 1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV 71 (133)
T ss_dssp EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence 6888888765 5788888 66887765 3588999999995 99999987767999999999999 9999999999
Q ss_pred CccChHHHhhCCcEEEecCCCCCcchHHHH
Q 026023 98 NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (244)
Q Consensus 98 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~ 127 (244)
||+|++++.++||.|+|+||+++.+||||+
T Consensus 72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999999
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.77 E-value=4.2e-18 Score=148.39 Aligned_cols=173 Identities=19% Similarity=0.191 Sum_probs=125.2
Q ss_pred HHHHHHhCCCeEEEeccCCC-----CCCHHHHHHH-hcCCccEEEeccC----------------ccccHHHHHHhhccC
Q 026023 29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAG 86 (244)
Q Consensus 29 ~~~~l~~~~~~v~~~~~~~~-----~~~~~~~~~~-~~~~ad~ii~~~~----------------~~~~~~~l~~~p~l~ 86 (244)
..+.|.+.|..|..+..+.. ......+.+. +. ++|+++...+ .++++++++.+|
T Consensus 16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~--- 91 (287)
T TIGR02853 16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK--- 91 (287)
T ss_pred HHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcC---
Confidence 45667778888766544311 0012223333 44 5898886321 125678888776
Q ss_pred CcEEEEcccCCCccChH-HHhhCCcEEE------ecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccc
Q 026023 87 GKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159 (244)
Q Consensus 87 ~k~I~~~~aG~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~ 159 (244)
.++...+|+++.+++ +++++||+|+ |++.+|+.++||+++++++.. .
T Consensus 92 --~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~ 145 (287)
T TIGR02853 92 --GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------T 145 (287)
T ss_pred --CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------c
Confidence 356678889999988 9999999999 998999999999999988852 1
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
+.++.|++++|+|+|+||+.+|+.| ++||++|.+++|++... +... . .+ ......++++++++++|+
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~-~~~~-~-------~g---~~~~~~~~l~~~l~~aDi 212 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADL-ARIT-E-------MG---LIPFPLNKLEEKVAEIDI 212 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH-H-------CC---CeeecHHHHHHHhccCCE
Confidence 2368999999999999999999998 89999999999987542 1110 0 01 112234578999999999
Q ss_pred EEEeC
Q 026023 240 VCTLC 244 (244)
Q Consensus 240 Vvl~~ 244 (244)
|++|+
T Consensus 213 Vint~ 217 (287)
T TIGR02853 213 VINTI 217 (287)
T ss_pred EEECC
Confidence 99985
No 27
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.59 E-value=5.8e-14 Score=122.98 Aligned_cols=174 Identities=17% Similarity=0.136 Sum_probs=122.7
Q ss_pred HHHHHHhCCCeEEEeccCCCCCC-----H-HHHHHHhcCCccEEEeccC----------------ccccHHHHHHhhccC
Q 026023 29 WINLLIEQDCRVEICTQKKTILS-----V-EDIIALIGDKCDGVIGQLT----------------EDWGETLFAALSRAG 86 (244)
Q Consensus 29 ~~~~l~~~~~~v~~~~~~~~~~~-----~-~~~~~~~~~~ad~ii~~~~----------------~~~~~~~l~~~p~l~ 86 (244)
..++|.+.|++|.....++.... . +...+.+. ++|+++...+ ..++++.++.+|+.
T Consensus 17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~- 94 (296)
T PRK08306 17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH- 94 (296)
T ss_pred HHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC-
Confidence 46678888999876544432110 0 01123344 5999886411 12367899999997
Q ss_pred CcEEEEcccCCCccChHHHhhCCcEEEecCCC------CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccc
Q 026023 87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (244)
Q Consensus 87 ~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~ 160 (244)
..+. .|.+.++++ +.+.++||.+.+.... ++.++||.++...+.. .+
T Consensus 95 -~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~------------------------~~ 147 (296)
T PRK08306 95 -CTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEH------------------------TP 147 (296)
T ss_pred -CEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHh------------------------CC
Confidence 6444 588899987 7889999999988864 8999999988765430 11
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.++.|++++|+|+|.+|+.+++.| +.+|++|.+++|++... +....+ + .......++.+.++++|+|
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~--~~~~~~-------G---~~~~~~~~l~~~l~~aDiV 214 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHL--ARITEM-------G---LSPFHLSELAEEVGKIDII 214 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH--HHHHHc-------C---CeeecHHHHHHHhCCCCEE
Confidence 357899999999999999999997 99999999999996542 111111 1 1222345788999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
+.++
T Consensus 215 I~t~ 218 (296)
T PRK08306 215 FNTI 218 (296)
T ss_pred EECC
Confidence 9763
No 28
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.55 E-value=2.7e-14 Score=130.76 Aligned_cols=119 Identities=18% Similarity=0.282 Sum_probs=90.0
Q ss_pred cccCCCccC-hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 026023 93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (244)
Q Consensus 93 ~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIv 171 (244)
..+|+..+- .......+|+|+|+|++++.+++|+++++++++. +..+|.+ +..+.|++|||+
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~~~LaGKtVgVI 260 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------DVMIAGKTVVVC 260 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------CCCcCCCEEEEE
Confidence 456765442 2222346899999999999999999999999988 3333333 246999999999
Q ss_pred cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+|+||+.+|+++ ++|||+|+++++.+....+... .++ ...+++++++.||+|++|+
T Consensus 261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~--------------~G~-~~~~leell~~ADIVI~at 317 (476)
T PTZ00075 261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAM--------------EGY-QVVTLEDVVETADIFVTAT 317 (476)
T ss_pred CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHh--------------cCc-eeccHHHHHhcCCEEEECC
Confidence 9999999999997 9999999999887654211110 111 2357999999999999874
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.09 E-value=2.2e-10 Score=100.30 Aligned_cols=68 Identities=31% Similarity=0.358 Sum_probs=53.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
..|+||||||||+|+||+.+|++| ++||++|+++++..+. .+. ... .++ ...+++|++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s-~~~-A~~------------~G~-~v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKS-FEV-AKA------------DGF-EVMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchh-hHH-HHH------------cCC-EECCHHHHHhcCCEE
Confidence 469999999999999999999998 9999999999876432 111 111 011 224899999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
++||
T Consensus 76 ~llL 79 (335)
T PRK13403 76 QMLL 79 (335)
T ss_pred EEeC
Confidence 9986
No 30
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.88 E-value=5.3e-08 Score=89.02 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=77.0
Q ss_pred EcccCCCccC-hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 026023 92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV 170 (244)
Q Consensus 92 ~~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgI 170 (244)
-..+|+..+- .....+.+++|.|.+..+....-|...+.- ++.|..... .....+.|++|+|
T Consensus 155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai~r--at~~~l~Gk~VlV 217 (425)
T PRK05476 155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGIKR--ATNVLIAGKVVVV 217 (425)
T ss_pred cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHHHHH--hccCCCCCCEEEE
Confidence 3566765542 222235689999999887766444222211 122211000 1123489999999
Q ss_pred EcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 171 vG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
+|+|.||+.+|+++ +++|++|+++++.+....+... .++ ...+++++++.+|+|+.+
T Consensus 218 iG~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~--------------~G~-~v~~l~eal~~aDVVI~a 274 (425)
T PRK05476 218 AGYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAM--------------DGF-RVMTMEEAAELGDIFVTA 274 (425)
T ss_pred ECCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHh--------------cCC-EecCHHHHHhCCCEEEEC
Confidence 99999999999997 9999999999998754222110 011 134789999999999865
No 31
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.78 E-value=2.3e-07 Score=84.36 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=51.5
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
..+.|++|+|+|+|.||+.+|+++ ++||++|+++++.+....+... .+. ...+++++++.+|+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~--------------~G~-~v~~leeal~~aDVV 254 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAM--------------DGF-RVMTMEEAAKIGDIF 254 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHh--------------cCC-EeCCHHHHHhcCCEE
Confidence 358999999999999999999997 9999999999887644222110 111 234688999999998
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+..
T Consensus 255 Ita 257 (406)
T TIGR00936 255 ITA 257 (406)
T ss_pred EEC
Confidence 764
No 32
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.76 E-value=1.9e-08 Score=79.92 Aligned_cols=67 Identities=27% Similarity=0.503 Sum_probs=48.5
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
..+.||++.|+|||.+|+.+|+.| +++|++|..++..|....+...+.| ...+++++++++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence 468999999999999999999998 9999999999999876555544432 335899999999998
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 83 vta 85 (162)
T PF00670_consen 83 VTA 85 (162)
T ss_dssp EE-
T ss_pred EEC
Confidence 864
No 33
>PLN02494 adenosylhomocysteinase
Probab=98.74 E-value=2.9e-08 Score=91.16 Aligned_cols=67 Identities=19% Similarity=0.362 Sum_probs=52.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
..+.|++|+|+|+|.||+.+|+++ ++|||+|+++++++....+.... .+ ...+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~------------G~---~vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME------------GY---QVLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc------------CC---eeccHHHHHhhCCEE
Confidence 357999999999999999999997 99999999999987542221111 11 123789999999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 314 I~t 316 (477)
T PLN02494 314 VTT 316 (477)
T ss_pred EEC
Confidence 864
No 34
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.56 E-value=1.8e-07 Score=82.81 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=53.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
..|.|++|||||+|++|+.+|+.| +.+|++|+++++......+. ... .++. ..+..+++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~-A~~------------~G~~-~~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK-AEA------------DGFE-VLTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH-HHH------------CCCe-eCCHHHHHhcCCEE
Confidence 468999999999999999999998 89999999887764432221 111 1122 24899999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
++++
T Consensus 78 vLaV 81 (330)
T PRK05479 78 MILL 81 (330)
T ss_pred EEcC
Confidence 9985
No 35
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.52 E-value=3.1e-06 Score=77.32 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=51.7
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
+..+.|++|+|+|+|.||+.+|+++ +++|++|+++++++...... .. .++ ...++++.++.+|+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A--~~------------~G~-~~~~~~e~v~~aDV 260 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA--AM------------EGY-EVMTMEEAVKEGDI 260 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH--Hh------------cCC-EEccHHHHHcCCCE
Confidence 3468999999999999999999996 99999999999886542111 11 111 12357889999999
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
|+.+
T Consensus 261 VI~a 264 (413)
T cd00401 261 FVTT 264 (413)
T ss_pred EEEC
Confidence 9865
No 36
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.47 E-value=4.8e-07 Score=79.93 Aligned_cols=67 Identities=28% Similarity=0.364 Sum_probs=49.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
|.|++|||||+|++|+++|+.| +.+|++|+++++...+..+... . .++. ..+..+++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~-~------------~Gv~-~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT-E------------DGFK-VGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH-H------------CCCE-ECCHHHHHhcCCEEEE
Confidence 5789999999999999999998 8999998876655433222211 0 1111 2468899999999999
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 66 aV 67 (314)
T TIGR00465 66 LL 67 (314)
T ss_pred eC
Confidence 85
No 37
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.39 E-value=2e-06 Score=71.29 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=49.5
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-hCCE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV 239 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD~ 239 (244)
.++.|++++|+|+|++|+.+|++| ..+|++|+++|+++.. .+++.+.+ +... .+.++++. +||+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~-~~~~~~~~------------g~~~-v~~~~l~~~~~Dv 88 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEA-VARAAELF------------GATV-VAPEEIYSVDADV 88 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc------------CCEE-EcchhhccccCCE
Confidence 468999999999999999999998 8999999999998643 22222211 1111 23456665 7999
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
++.+
T Consensus 89 ~vp~ 92 (200)
T cd01075 89 FAPC 92 (200)
T ss_pred EEec
Confidence 9854
No 38
>PLN02712 arogenate dehydrogenase
Probab=98.39 E-value=9.6e-07 Score=85.39 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=54.3
Q ss_pred ccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-h
Q 026023 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-E 236 (244)
Q Consensus 158 ~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~ 236 (244)
..+.++.+++|||||+|.||+.+|+.| +.+|.+|.+|+++.... . ... .++....++++++. .
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-a~~------------~Gv~~~~~~~el~~~~ 425 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E-AQK------------LGVSYFSDADDLCEEH 425 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H-HHH------------cCCeEeCCHHHHHhcC
Confidence 345678999999999999999999998 89999999999985321 1 111 11223468999886 5
Q ss_pred CCEEEEeC
Q 026023 237 ADVVCTLC 244 (244)
Q Consensus 237 sD~Vvl~~ 244 (244)
+|+|++++
T Consensus 426 aDvVILav 433 (667)
T PLN02712 426 PEVILLCT 433 (667)
T ss_pred CCEEEECC
Confidence 99999985
No 39
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=1.2e-05 Score=69.92 Aligned_cols=144 Identities=19% Similarity=0.220 Sum_probs=91.4
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++.+..++ ..+++++.+.+.. .+|++++..+ ..+++ .+++..+.. |= +|.+-...
T Consensus 57 ~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~~n 126 (285)
T PRK14189 57 CEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHVAN 126 (285)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCChhh
Confidence 355588877666543 3477777766542 4678888643 23443 355555444 32 22221111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH-HHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I-G~~vA~~ 183 (244)
. |-...+. ..+.+.++.-++.++=. .+.++.||++.|+|.|.| |+-+|.+
T Consensus 127 ~---g~l~~~~-~~~~PcTp~aii~lL~~-------------------------~~i~l~Gk~vvViGrs~iVGkPla~l 177 (285)
T PRK14189 127 A---GALMTGQ-PLFRPCTPYGVMKMLES-------------------------IGIPLRGAHAVVIGRSNIVGKPMAML 177 (285)
T ss_pred h---hHhhCCC-CCCcCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCccHHHHHHH
Confidence 1 1111122 23456666665554322 235699999999999999 9999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ...|++|..+..+ ..+|.+.+++||+|+..+
T Consensus 178 L-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~av 209 (285)
T PRK14189 178 L-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAV 209 (285)
T ss_pred H-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcC
Confidence 9 8999999987643 147999999999999863
No 40
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.37 E-value=1.1e-06 Score=70.38 Aligned_cols=64 Identities=30% Similarity=0.351 Sum_probs=48.9
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
++|||||+|+.|..+|+.| ..-|.+|.+|||++... +++.+ .+....+++.|+.++||+|++++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~-------------~g~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALAE-------------AGAEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHHH-------------TTEEEESSHHHHHHHBSEEEE-S
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhHH-------------hhhhhhhhhhhHhhcccceEeec
Confidence 4899999999999999999 78899999999987542 22221 12445689999999999999875
No 41
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=2.4e-05 Score=68.05 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=90.8
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. +++++++..+ ..+++. +++..+.. |= +|.+....
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~~n 126 (286)
T PRK14175 57 AEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KD-------VDGFHPIN 126 (286)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCCccc
Confidence 344577776665544 3477777766542 4578888643 234443 44444443 32 22221110
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+. ..+.+.++.-++.++-. .+.++.|+++.|+|.|. +|+.+|.+
T Consensus 127 ~---g~l~~~~-~~~~PcTp~ai~~ll~~-------------------------~~i~l~Gk~vvVIGrs~~VG~pla~l 177 (286)
T PRK14175 127 I---GKLYIDE-QTFVPCTPLGIMEILKH-------------------------ADIDLEGKNAVVIGRSHIVGQPVSKL 177 (286)
T ss_pred h---HhHhcCC-CCCCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCchhHHHHHHH
Confidence 0 1111111 23456666666554432 12469999999999999 99999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ...|++|..++++. .+|.+.+++||+|+..+
T Consensus 178 L-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAv 209 (286)
T PRK14175 178 L-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAV 209 (286)
T ss_pred H-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECC
Confidence 9 89999999988642 36899999999999764
No 42
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.27 E-value=2.5e-05 Score=68.28 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=90.5
Q ss_pred HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHHH
Q 026023 34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNAA 105 (244)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~~ 105 (244)
++.|++.+....++ ..+++++.+.+.. .+|++++..+ ..+++. +++..+.. | =+|.+.....
T Consensus 59 ~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~~N~ 128 (301)
T PRK14194 59 EEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--K-------DVDGFHSENV 128 (301)
T ss_pred HHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--h-------ccCccChhhh
Confidence 44577776655543 3477777776532 4678888643 234443 44444433 3 2222221111
Q ss_pred hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHHH
Q 026023 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARMM 184 (244)
Q Consensus 106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~l 184 (244)
|-...+ ...+.+.++.-++.++=. .+.++.||+|+|+|.| .+|+.+|.+|
T Consensus 129 ---g~l~~~-~~~~~PcTp~aii~lL~~-------------------------~~i~l~Gk~V~vIG~s~ivG~PmA~~L 179 (301)
T PRK14194 129 ---GGLSQG-RDVLTPCTPSGCLRLLED-------------------------TCGDLTGKHAVVIGRSNIVGKPMAALL 179 (301)
T ss_pred ---hHHhcC-CCCCCCCcHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCccHHHHHHHH
Confidence 111111 123456677666654432 2357999999999996 9999999999
Q ss_pred hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
..-|++|..++++. .++.++.++||+|++++
T Consensus 180 -~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsav 210 (301)
T PRK14194 180 -LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAV 210 (301)
T ss_pred -HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEec
Confidence 78899999998652 36889999999999864
No 43
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.24 E-value=3.9e-06 Score=60.80 Aligned_cols=64 Identities=28% Similarity=0.382 Sum_probs=47.7
Q ss_pred EEEEEcCChHHHHHHHHHhccCC---cEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccC-CHHHHhhhCCEEE
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVVC 241 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG---~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~sD~Vv 241 (244)
++||+|+|++|+.+++.| ..-| .+|. +++|++.. .++..+.+ +..... +..|++++||+|+
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEK-AAELAKEY------------GVQATADDNEEAAQEADVVI 66 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHH-HHHHHHHC------------TTEEESEEHHHHHHHTSEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHH-HHHHHHhh------------ccccccCChHHhhccCCEEE
Confidence 699999999999999998 7899 8999 55888754 23333322 111223 7999999999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 67 lav 69 (96)
T PF03807_consen 67 LAV 69 (96)
T ss_dssp E-S
T ss_pred EEE
Confidence 985
No 44
>PLN02256 arogenate dehydrogenase
Probab=98.21 E-value=4.3e-06 Score=73.67 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hhCCEEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD~Vvl 242 (244)
.+++|||+|+|.||+.+|+.| +..|.+|.+++++.....+ ..+ ++....++++++ ..+|+|++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a---~~~------------gv~~~~~~~e~~~~~aDvVil 98 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA---AEL------------GVSFFRDPDDFCEEHPDVVLL 98 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH---HHc------------CCeeeCCHHHHhhCCCCEEEE
Confidence 667999999999999999998 8899999999998632111 111 122346788887 47999999
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 99 av 100 (304)
T PLN02256 99 CT 100 (304)
T ss_pred ec
Confidence 75
No 45
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.14 E-value=5.7e-06 Score=64.18 Aligned_cols=73 Identities=26% Similarity=0.343 Sum_probs=56.6
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
++.|+++.|+|.|.+|+.++..| ...|++ |..++|+... .++..+.+ ....+....++++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 68999999999999999999998 799997 9999998754 33333322 22233455667899999999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 80 I~a 82 (135)
T PF01488_consen 80 INA 82 (135)
T ss_dssp EE-
T ss_pred EEe
Confidence 875
No 46
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=7.2e-05 Score=64.98 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=91.0
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. .+|++++..+ ..+++ .+++..+.. |= +|.+....
T Consensus 57 ~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KD-------VDGl~~~N 126 (284)
T PRK14179 57 ALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KD-------VDGFHPMN 126 (284)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCHhh
Confidence 355688777666554 3577777766542 4578888743 23443 344444433 32 22221111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~ 183 (244)
. |-...+. ..+.++++.-++.++-. .+.++.||+++|+|. |-.|+-+|.+
T Consensus 127 ~---g~l~~~~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~v~vIG~S~ivG~Pla~l 177 (284)
T PRK14179 127 T---GHLWSGR-PVMIPCTPAGIMEMFRE-------------------------YNVELEGKHAVVIGRSNIVGKPMAQL 177 (284)
T ss_pred H---HHHhCCC-CCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcCcHHHHHH
Confidence 1 1111122 23567777776654432 235699999999999 9999999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|++|..+... ..++.+..++||+|+..+
T Consensus 178 L-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~av 209 (284)
T PRK14179 178 L-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAI 209 (284)
T ss_pred H-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEec
Confidence 9 7889999998321 137999999999999864
No 47
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.08 E-value=7.1e-06 Score=71.63 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=49.0
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|||||+|.+|+.+|+.| ...|.+|.+|||++.. .+...+ . +.....+..+++++||+|++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~-~~~~~~--------~-----g~~~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEV-ADELLA--------A-----GAVTAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHH-HHHHHH--------C-----CCcccCCHHHHHhcCCEEEEec
Confidence 489999999999999998 7899999999998744 222111 1 1223468899999999999985
No 48
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.08 E-value=0.00048 Score=64.60 Aligned_cols=155 Identities=19% Similarity=0.119 Sum_probs=90.9
Q ss_pred HHHHHHhCCCeEEEecc--CCCCCCHHHHHHH---------hcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023 29 WINLLIEQDCRVEICTQ--KKTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (244)
Q Consensus 29 ~~~~l~~~~~~v~~~~~--~~~~~~~~~~~~~---------~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~ 97 (244)
..++|.+.|++|.+-.. ....+++++..++ +. .+|+|+.- . +++++.++.+++ |-.+|+...-.-
T Consensus 21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~-~adiIlkV-~-~P~~~e~~~l~~-g~tli~~l~p~~ 96 (511)
T TIGR00561 21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFW-QSDIILKV-N-APSDAEIAELPA-GKALVSFIWPAQ 96 (511)
T ss_pred HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchh-cCCEEEEe-C-CCCHHHHHhcCC-CCEEEEEcCccC
Confidence 36677788888865433 1224566666642 12 36766632 2 234555677766 435666665555
Q ss_pred CccChHHHhhCCcEEEecCCCC--C--------cchHHHHHHHHHHHHhChHHHHHHHHc---CCCCCCCCCcccccccC
Q 026023 98 NNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRA---GLYDGWLPNLFVGNLLK 164 (244)
Q Consensus 98 d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~~l~~~L~~~R~~~~~~~~~~~---~~w~~~~~~~~~~~~l~ 164 (244)
|.=.++.+.+++|++...-.+. . .++|+.+ -.|-+....+..-+ |. .. .. ..+.
T Consensus 97 n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA------Gy~Avi~Aa~~lgr~~~g~-----~t-aa-g~vp 163 (511)
T TIGR00561 97 NPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA------GYRAIIEAAHEFGRFFTGQ-----IT-AA-GKVP 163 (511)
T ss_pred CHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH------HHHHHHHHHHHhhhhcCCc-----ee-cC-CCCC
Confidence 5445677888999887644222 1 2233322 11211111111111 11 00 01 1456
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++.|+|+|.+|...++.+ +.+|++|.++|+++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~r 199 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEV 199 (511)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 78999999999999999996 9999999999998754
No 49
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=0.00012 Score=64.06 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=89.4
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++....++ ..+++|+.+.+.. .++++++..+ ..+++ .+++..+.. | =+|.+-...
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--K-------DVDGl~~~n 126 (296)
T PRK14188 57 TKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--K-------DVDGLHVVN 126 (296)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCChhh
Confidence 345577776555433 3577877776542 4578888643 23443 344444443 3 223222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc-CChHHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG-~G~IG~~vA~~ 183 (244)
. |-...+. ..+.++++.-++.++=. .+.++.||+|+|+| .|..|+.+|.+
T Consensus 127 ~---g~l~~~~-~~~~PcTp~ai~~ll~~-------------------------~~i~~~Gk~V~viGrs~~mG~PmA~~ 177 (296)
T PRK14188 127 A---GRLATGE-TALVPCTPLGCMMLLRR-------------------------VHGDLSGLNAVVIGRSNLVGKPMAQL 177 (296)
T ss_pred H---HHHhCCC-CCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEEcCCcchHHHHHHH
Confidence 1 1111111 23567777766654422 12469999999999 99999999999
Q ss_pred HhccCCcEEEEEc-CCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..++ |+ .+++++.++||+|++++
T Consensus 178 L-~~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsav 209 (296)
T PRK14188 178 L-LAANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAV 209 (296)
T ss_pred H-HhCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEec
Confidence 9 67899999995 43 25889999999999864
No 50
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.06 E-value=1e-05 Score=70.67 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=49.4
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
++|||+|+|.+|+.+|+.| ...|.+|.+|||++... ++.. . .+.....++++++++||+|++++
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~~-~------------~g~~~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEVI-A------------AGAETASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH-H------------CCCeecCCHHHHHhcCCEEEEeC
Confidence 4799999999999999998 78999999999987542 2111 0 11223468999999999999875
No 51
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00015 Score=63.03 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=90.7
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++++.+.+.. ++|++++..+ ..+++ .+++..+.. |= +|.+-...
T Consensus 63 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~~N 132 (287)
T PRK14176 63 CERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KD-------ADGFHPYN 132 (287)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccChhh
Confidence 345588776665544 3477777765543 4678888743 23443 344444443 32 22221110
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
.|-...+.+ .+.+.+++-++.++=. .+.++.||++.|+|.|+ +|+-+|.+
T Consensus 133 ---~g~l~~g~~-~~~PcTp~av~~ll~~-------------------------~~i~l~Gk~vvViGrs~iVGkPla~l 183 (287)
T PRK14176 133 ---MGKLMIGDE-GLVPCTPHGVIRALEE-------------------------YGVDIEGKNAVIVGHSNVVGKPMAAM 183 (287)
T ss_pred ---hhhHhcCCC-CCCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCcccHHHHHHH
Confidence 111112222 3566777766654422 23569999999999999 99999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
| ..-|+.|..++... .+|.+..++||+|+..
T Consensus 184 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvv~A 214 (287)
T PRK14176 184 L-LNRNATVSVCHVFT----------------------------DDLKKYTLDADILVVA 214 (287)
T ss_pred H-HHCCCEEEEEeccC----------------------------CCHHHHHhhCCEEEEc
Confidence 9 89999999888531 4799999999999875
No 52
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00013 Score=63.37 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=90.3
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++|+.+.+.. +++++++..+ ..+++ .+++..+.. |= +|.+-...
T Consensus 58 a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~~n 127 (285)
T PRK10792 58 CEEVGFVSRSYDLPE-TTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD--KD-------VDGFHPYN 127 (285)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cCccChhh
Confidence 345587776665543 3477777766543 4678888643 23433 344444443 32 22221111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+.+ .+.+.++.-++.++-. .+.++.||++.|+|.|+ +|+-+|.+
T Consensus 128 ~---g~l~~~~~-~~~PcTp~av~~ll~~-------------------------~~i~l~Gk~vvViGrs~iVG~Pla~l 178 (285)
T PRK10792 128 V---GRLAQRIP-LLRPCTPRGIMTLLER-------------------------YGIDTYGLNAVVVGASNIVGRPMSLE 178 (285)
T ss_pred H---hHHhCCCC-CCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCcccHHHHHHH
Confidence 1 11111112 2456666665554422 23469999999999999 99999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+.++. .+|.+..++||+|+..+
T Consensus 179 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvi~av 210 (285)
T PRK10792 179 L-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADLLVVAV 210 (285)
T ss_pred H-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCEEEEcC
Confidence 9 89999999987542 47999999999999764
No 53
>PLN02712 arogenate dehydrogenase
Probab=98.03 E-value=1.8e-05 Score=76.66 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=50.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD~V 240 (244)
.-+.++|||||+|.||+.+|+.| +.+|.+|.+++++..... ... .++....++++++ .++|+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~---A~~------------~Gv~~~~d~~e~~~~~aDvV 112 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLA---ARS------------LGVSFFLDPHDLCERHPDVI 112 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH---HHH------------cCCEEeCCHHHHhhcCCCEE
Confidence 34557999999999999999998 899999999999843311 111 1222346788866 569999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
++++
T Consensus 113 iLav 116 (667)
T PLN02712 113 LLCT 116 (667)
T ss_pred EEcC
Confidence 9985
No 54
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.98 E-value=3e-05 Score=67.23 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=48.0
Q ss_pred CCEEEEEcCChHHHHHHHHHhcc-CCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~a-fG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..+|||+|+|+||+.+++.|.+. .++++. .++|++.. .+++.+.+| . ...+.+++++++++|+|++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~-a~~~a~~~g-------~----~~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQR-HADFIWGLR-------R----PPPVVPLDQLATHADIVVE 73 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHH-HHHHHHhcC-------C----CcccCCHHHHhcCCCEEEE
Confidence 46899999999999999998432 689877 56776543 233222221 0 1234689999999999998
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 74 ~t 75 (271)
T PRK13302 74 AA 75 (271)
T ss_pred CC
Confidence 74
No 55
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.97 E-value=3.2e-05 Score=61.42 Aligned_cols=67 Identities=33% Similarity=0.338 Sum_probs=48.7
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
|+||+|.|+|||+-|.+-|.-| +--|.+|++-.|...+.++...+ ..+ ...+..|..++||+|.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~~-----------~Gf---~v~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAKA-----------DGF---EVMSVAEAVKKADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHHH-----------TT----ECCEHHHHHHC-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHHH-----------CCC---eeccHHHHHhhCCEEEE
Confidence 6899999999999999999999 99999999988887644433111 111 23589999999999987
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
.+
T Consensus 67 L~ 68 (165)
T PF07991_consen 67 LL 68 (165)
T ss_dssp -S
T ss_pred eC
Confidence 53
No 56
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.91 E-value=2.9e-05 Score=68.07 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=49.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
++|||+|+|.+|..+|+.| ...|.+|.+|||++... +++.+ . +.....+..+++++||+|++++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~~--------~-----g~~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALVD--------K-----GATPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------c-----CCcccCCHHHHHhcCCEEEEec
Confidence 3799999999999999998 68899999999987542 22111 1 1223468899999999999875
No 57
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.90 E-value=3.2e-05 Score=69.67 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=48.3
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
++|+|||+|.||+.+|+.| +..|..|..+++++......... +.... .....++++++++||+|++++
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~a~---------~~~~~-~~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLARAL---------GFGVI-DELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHHHh---------cCCCC-cccccCHHHHhcCCCEEEEeC
Confidence 4799999999999999998 89998888888776542211100 11111 112357889999999999975
No 58
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.87 E-value=5.8e-05 Score=65.58 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=48.7
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
+.+|||||+|++|+.+++.| ..-| -+|.+++|+..+..+.+...+ +.....+..+++++||+|
T Consensus 3 ~mkI~~IG~G~mG~aia~~l-~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------------g~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGL-LHANVVKGEQITVSNRSNETRLQELHQKY------------GVKGTHNKKELLTDANIL 69 (279)
T ss_pred CCEEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCCHHHHHHHHHhc------------CceEeCCHHHHHhcCCEE
Confidence 45899999999999999998 5555 679999987643333322211 122346788999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
++++
T Consensus 70 ilav 73 (279)
T PRK07679 70 FLAM 73 (279)
T ss_pred EEEe
Confidence 9975
No 59
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=0.00085 Score=58.52 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=47.4
Q ss_pred cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
.++.||++.|+|.|. .|+.+|.+| ...|++|..+++.. .+|.+.+++||+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI 205 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI 205 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence 569999999999998 999999998 79999999988731 368888899999
Q ss_pred EEEeC
Q 026023 240 VCTLC 244 (244)
Q Consensus 240 Vvl~~ 244 (244)
|+.++
T Consensus 206 vI~At 210 (283)
T PRK14192 206 IVGAV 210 (283)
T ss_pred EEEcc
Confidence 98763
No 60
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.84 E-value=4.2e-05 Score=67.16 Aligned_cols=63 Identities=17% Similarity=0.352 Sum_probs=48.1
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl~ 243 (244)
+|||||+|++|+.+|+.| ...|.+|.+|||++... ++. .. .+.....+.++++++ +|+|+++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~-~~------------~g~~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVA-GK------------LGITARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHH-HH------------CCCeecCCHHHHHHhCCCCCEEEEE
Confidence 699999999999999998 78899999999986542 221 11 112334689999887 5899987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 67 v 67 (299)
T PRK12490 67 V 67 (299)
T ss_pred e
Confidence 5
No 61
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.82 E-value=6.7e-05 Score=60.45 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=47.1
Q ss_pred cccCCCEEEEEcCChH-HHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~I-G~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
.++.|+++.|+|.|.+ |+.+|+.| ...|++|..++|+. .++.+.+++||+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi 90 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI 90 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence 3589999999999985 88899998 89999999999862 368899999999
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
|+.+
T Consensus 91 VIsa 94 (168)
T cd01080 91 VIVA 94 (168)
T ss_pred EEEc
Confidence 9975
No 62
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=0.0006 Score=59.30 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=90.9
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. ..+++++..+ ..+++. +++..+.. | =+|.+....
T Consensus 56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~~n 125 (285)
T PRK14191 56 CERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHPLN 125 (285)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccChhh
Confidence 345587777666554 3467777765543 3578888643 234433 44444443 3 223222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~ 183 (244)
. |-...+. ..+.++++.-++.++=. .+.++.||+|.|+|-| -+|+.+|.+
T Consensus 126 ~---g~l~~g~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvVvGrs~~VG~Pla~l 176 (285)
T PRK14191 126 I---GKLCSQL-DGFVPATPMGVMRLLKH-------------------------YHIEIKGKDVVIIGASNIVGKPLAML 176 (285)
T ss_pred H---HHHhcCC-CCCCCCcHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCchhHHHHHHH
Confidence 1 1111222 23567777776665422 2346999999999999 899999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+.... .+|.+.+++||+|+..+
T Consensus 177 L-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~Av 208 (285)
T PRK14191 177 M-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGV 208 (285)
T ss_pred H-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEec
Confidence 8 78899999885421 36889999999999864
No 63
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.80 E-value=4.1e-05 Score=70.12 Aligned_cols=64 Identities=27% Similarity=0.463 Sum_probs=43.4
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC-----------cchHHHHHHhhhhhhhhcCCCCCccccccC
Q 026023 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (244)
...|+||||+|||+|+||+. ++|++++.++++. .+. .+.. ....+ ...
T Consensus 31 ~~~LkgKtIaIIGyGSqG~A------qAlNLrdSGvnVvvglr~~~id~~~~s-~~kA-----------~~dGF---~v~ 89 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLN------QGLNMRDSGLDISYALRKEAIAEKRAS-WRKA-----------TENGF---KVG 89 (487)
T ss_pred hHHhCCCEEEEEccCHHHHH------HhCCCccccceeEEeccccccccccch-HHHH-----------HhcCC---ccC
Confidence 35799999999999999993 5666666666555 111 1110 00112 346
Q ss_pred CHHHHhhhCCEEEEeC
Q 026023 229 SMDEVLREADVVCTLC 244 (244)
Q Consensus 229 ~l~ell~~sD~Vvl~~ 244 (244)
+++|++++||+|++.+
T Consensus 90 ~~~Ea~~~ADvVviLl 105 (487)
T PRK05225 90 TYEELIPQADLVINLT 105 (487)
T ss_pred CHHHHHHhCCEEEEcC
Confidence 8999999999999864
No 64
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.77 E-value=5.8e-05 Score=65.58 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=44.8
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|||||+|.||+.+|+.| +..|.+|.+|++++... +...+ .+. .. ....+. +.+++||+|++++
T Consensus 2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~-~~a~~--------~g~--~~-~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTC-ERAIE--------RGL--VD-EASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------CCC--cc-cccCCH-hHhcCCCEEEEcC
Confidence 699999999999999998 78899999999986542 21110 111 00 011234 5789999999874
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.76 E-value=5.8e-05 Score=66.47 Aligned_cols=67 Identities=27% Similarity=0.347 Sum_probs=47.9
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
.++|+|+|+|.||..+|+.| +..|. +|.+|+|++... +. .... +. ......++++.++++|+|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~-a~~~-------g~---~~~~~~~~~~~~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-AR-AREL-------GL---GDRVTTSAAEAVKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HH-HHhC-------CC---CceecCCHHHHhcCCCEEEE
Confidence 46899999999999999998 67774 899999986531 11 1111 11 01123578889999999998
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 73 av 74 (307)
T PRK07502 73 CV 74 (307)
T ss_pred CC
Confidence 75
No 66
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.73 E-value=0.0001 Score=63.90 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=47.2
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc----EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
.++||||+|++|+.+++.| ..-|. +|++++|++.. .+...+.+ ++....+..+++++||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L-~~~g~~~~~~I~v~~r~~~~-~~~l~~~~------------g~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGM-INKNIVSPDQIICSDLNVSN-LKNASDKY------------GITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHH-HHCCCCCCceEEEECCCHHH-HHHHHHhc------------CcEEeCCcHHHHhhCCEEE
Confidence 4799999999999999987 55453 69999998644 22222111 1223457889999999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 69 Lav 71 (272)
T PRK12491 69 LSI 71 (272)
T ss_pred EEe
Confidence 975
No 67
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.72 E-value=0.00014 Score=57.06 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=51.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
++.+++++|+|.|.+|+.+++.| ...| .+|.+++|++... ++..+.++. .... ....++.++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~~-------~~~~-~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFGE-------LGIA-IAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHhh-------cccc-eeecchhhccccCCEE
Confidence 36688999999999999999998 6775 7899999986542 222222210 0000 1235788889999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
++++
T Consensus 86 i~~~ 89 (155)
T cd01065 86 INTT 89 (155)
T ss_pred EeCc
Confidence 9864
No 68
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.72 E-value=7.6e-05 Score=68.62 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=52.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.+.|++|+|+|+|.||+.+++.| ..+| .+|.+++|+.... +++...+ +.. .....++.+.+..+|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence 37889999999999999999998 7899 6899999987542 2222222 111 12335788999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
+.++
T Consensus 245 i~aT 248 (417)
T TIGR01035 245 ISST 248 (417)
T ss_pred EECC
Confidence 9763
No 69
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.72 E-value=6.7e-05 Score=66.41 Aligned_cols=67 Identities=27% Similarity=0.428 Sum_probs=55.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
..+.||++.|.|||..|+-+|.++ +++|++|++..-.|-...+..++.| ...+++|....+|++
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDif 268 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIF 268 (420)
T ss_pred eeecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEE
Confidence 358999999999999999999997 9999999999988766555544432 345799999999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+-+
T Consensus 269 iT~ 271 (420)
T COG0499 269 VTA 271 (420)
T ss_pred EEc
Confidence 864
No 70
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.70 E-value=0.00011 Score=64.36 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=48.3
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|||||+|++|+.+|+.| ..-|.+|.+|+++++. +++.+ .+.....+..++.++||+|++++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~~-------------~g~~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELLS-------------LGAVSVETARQVTEASDIIFIMV 63 (292)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHHH-------------cCCeecCCHHHHHhcCCEEEEeC
Confidence 699999999999999998 7889999999988642 22211 11223468889999999999875
No 71
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.70 E-value=8.6e-05 Score=67.20 Aligned_cols=196 Identities=16% Similarity=0.148 Sum_probs=102.2
Q ss_pred HHHHHHhCCCeEEEeccC--CCCCCHHHHHHH---hcC------CccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023 29 WINLLIEQDCRVEICTQK--KTILSVEDIIAL---IGD------KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (244)
Q Consensus 29 ~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~---~~~------~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~ 97 (244)
..+.|.+.|++|.+-... ...+++++..++ +.+ .+|+|+.- .. ..++.++.++. |--+++......
T Consensus 22 ~v~~l~~~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~~dii~~V-k~-p~~~~~~~~~~-g~~l~~~~~~a~ 98 (370)
T TIGR00518 22 GVAELTSRGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWDAELVLKV-KE-PLPEEYGYLRH-GQILFTYLHLAA 98 (370)
T ss_pred HHHHHHhCCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhcCCEEEEe-CC-CCHHHHhhcCC-CcEEEEEeccCC
Confidence 356677778888654331 223455555432 100 26776632 22 33344455544 324555555555
Q ss_pred CccChHHHhhCCcEEEecCCCC--------CcchHHHHHHHHHHH-HhChHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 026023 98 NNVDVNAANKYGIAVGNTPGVL--------TETTAELAASLSLAA-ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168 (244)
Q Consensus 98 d~id~~~~~~~gI~v~n~~~~~--------~~~vAE~~l~~~L~~-~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tv 168 (244)
+....+.+.++++.....-..- -.++|+.+=-..... +..+. + .+.+.......-..+.+.+|
T Consensus 99 ~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~aa~~~~------~--~~~g~~~~~~~~~~l~~~~V 170 (370)
T TIGR00518 99 ERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLE------K--TQGGRGVLLGGVPGVEPGDV 170 (370)
T ss_pred CHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHHHHHhH------h--hcCCcceeecCCCCCCCceE
Confidence 5555677778887766533321 122233221111110 11111 1 10000000001124678899
Q ss_pred EEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 169 gIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.|+|+|.+|+.+++.+ +.+|++|.++|+++.. .+.....++.. .........++.+.++++|+|+.+
T Consensus 171 lViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~-~~~l~~~~g~~------v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 171 TIIGGGVVGTNAAKMA-NGLGATVTILDINIDR-LRQLDAEFGGR------IHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred EEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHH-HHHHHHhcCce------eEeccCCHHHHHHHHccCCEEEEc
Confidence 9999999999999997 9999999999998643 12211122110 000111224678899999999975
No 72
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.70 E-value=0.0026 Score=59.77 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=92.5
Q ss_pred HHHHHHhCCCeEEEecc--CCCCCCHHHHHHH---------hcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023 29 WINLLIEQDCRVEICTQ--KKTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (244)
Q Consensus 29 ~~~~l~~~~~~v~~~~~--~~~~~~~~~~~~~---------~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~ 97 (244)
..++|.+.|++|.+-.. ....+++++..++ +. ++|+|+.- . +++++.++.+++ |-.+|+......
T Consensus 22 ~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV-~-~P~~~e~~~l~~-g~~li~~l~p~~ 97 (509)
T PRK09424 22 TVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKV-N-APSDDEIALLRE-GATLVSFIWPAQ 97 (509)
T ss_pred HHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEe-C-CCCHHHHHhcCC-CCEEEEEeCccc
Confidence 35677778888865443 1224567777652 11 36777642 2 234555677766 446666666655
Q ss_pred CccChHHHhhCCcEEEecCCCC----C------cchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccc-ccccCCC
Q 026023 98 NNVDVNAANKYGIAVGNTPGVL----T------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV-GNLLKGQ 166 (244)
Q Consensus 98 d~id~~~~~~~gI~v~n~~~~~----~------~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~-~~~l~g~ 166 (244)
|.=.++.+.++||.+...-..- + .++|+.+= +|-+...-+.. +. ..+.... .....|.
T Consensus 98 ~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~---~~~g~~taaG~~pg~ 166 (509)
T PRK09424 98 NPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GR---FFTGQITAAGKVPPA 166 (509)
T ss_pred CHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cc---cCCCceeccCCcCCC
Confidence 5445677888999887643322 1 22333221 11111111111 11 1110000 1145799
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+|.|+|.|.||...+..+ +.+|++|.++|+++..
T Consensus 167 kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~r 200 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEV 200 (509)
T ss_pred EEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 999999999999999995 9999999999998754
No 73
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.70 E-value=2.1e-05 Score=60.43 Aligned_cols=67 Identities=27% Similarity=0.396 Sum_probs=42.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
...+|||||.|+.|..+++.| +.-|..|.++ +|+... .+.... .++.....+++|+++++|++++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~s-a~~a~~------------~~~~~~~~~~~~~~~~aDlv~i 74 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPAS-AERAAA------------FIGAGAILDLEEILRDADLVFI 74 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-H-HHHHHC--------------TT-----TTGGGCC-SEEEE
T ss_pred CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccc-cccccc------------ccccccccccccccccCCEEEE
Confidence 445899999999999999999 8899998876 454422 222111 1122234578899999999998
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 75 av 76 (127)
T PF10727_consen 75 AV 76 (127)
T ss_dssp -S
T ss_pred Ee
Confidence 74
No 74
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.68 E-value=0.0001 Score=64.75 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=47.8
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl~ 243 (244)
+|||+|+|.+|+.+|+.| ...|.+|.+|||++... +++.+ .+....++.+|+++. +|+|+++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~~-------------~g~~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EALAE-------------EGATGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHH-------------CCCeecCCHHHHHhhcCCCCEEEEE
Confidence 699999999999999998 78899999999997542 22111 112334688898886 5899886
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 67 v 67 (301)
T PRK09599 67 V 67 (301)
T ss_pred e
Confidence 4
No 75
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.67 E-value=0.00015 Score=62.47 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=47.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccCC---cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
.+++|||+|+||+.+++.| ..-| .+|.+++|++.. .+...+.| +.....+..++++++|+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~-~~~~~~~~------------g~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEK-RAALAEEY------------GVRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHH-HHHHHHhc------------CCeecCChHHHHhcCCEEEE
Confidence 4799999999999999998 5667 689999998643 22222111 11223578889999999999
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 69 ~v 70 (267)
T PRK11880 69 AV 70 (267)
T ss_pred Ec
Confidence 75
No 76
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.65 E-value=0.00023 Score=64.50 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..++|+|+| +|.+|+.+|+.| +.-|..|.+|+++.. .+.++++++||+|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil 148 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV 148 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence 457999999 999999999998 788999999998531 256788899999998
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 149 av 150 (374)
T PRK11199 149 SV 150 (374)
T ss_pred eC
Confidence 74
No 77
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.64 E-value=0.00013 Score=62.79 Aligned_cols=63 Identities=30% Similarity=0.373 Sum_probs=46.3
Q ss_pred EEEEEcCChHHHHHHHHHhccCCc----EEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~----~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+|||||+|++|+.+++.| ..-|. +|+++ +|++.. .+.. ..+ +.....+..+++++||+|+
T Consensus 2 kI~~IG~G~mG~a~a~~L-~~~g~~~~~~i~v~~~r~~~~-~~~~-~~~------------g~~~~~~~~e~~~~aDvVi 66 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGL-VASGVVPPSRISTADDSNPAR-RDVF-QSL------------GVKTAASNTEVVKSSDVII 66 (266)
T ss_pred eEEEECCcHHHHHHHHHH-HHCCCCCcceEEEEeCCCHHH-HHHH-HHc------------CCEEeCChHHHHhcCCEEE
Confidence 699999999999999998 56676 88888 877543 2221 111 2223467889999999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 67 l~v 69 (266)
T PLN02688 67 LAV 69 (266)
T ss_pred EEE
Confidence 874
No 78
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.64 E-value=7.6e-05 Score=65.29 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=31.9
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|||||.|.+|..+|+.| ...|.+|+.||+++..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~ 39 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAA 39 (295)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHH
Confidence 5899999999999999998 6889999999998754
No 79
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.61 E-value=0.0022 Score=55.77 Aligned_cols=144 Identities=16% Similarity=0.233 Sum_probs=90.6
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++++.+.+.. .+|++++..+ ..+++. +++..+.. | =+|.+....
T Consensus 56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~p~N 125 (284)
T PRK14170 56 TEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--K-------DVDGFHPVN 125 (284)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcccCChhh
Confidence 345577776665544 3477777766542 4678888643 234443 44444443 3 223222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+. ..+.+.++.-++.++-. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 126 ~---g~l~~~~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvVvGrS~iVGkPla~l 176 (284)
T PRK14170 126 V---GNLFIGK-DSFVPCTPAGIIELIKS-------------------------TGTQIEGKRAVVIGRSNIVGKPVAQL 176 (284)
T ss_pred h---hHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 1111111 23567777776665521 23579999999999987 59999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+.... .+|.+..++||+|+..+
T Consensus 177 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~Av 208 (284)
T PRK14170 177 L-LNENATVTIAHSRT----------------------------KDLPQVAKEADILVVAT 208 (284)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEec
Confidence 9 78899998876431 37999999999999864
No 80
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.61 E-value=0.00023 Score=61.94 Aligned_cols=65 Identities=26% Similarity=0.269 Sum_probs=51.8
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
.+||+||+|.-|..+|++| ..=|..|.+|||++.+. ++..... +.....+..|+.+++|+|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka-~~~~~~~------------Ga~~a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKA-AELLAAA------------GATVAASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhh-hHHHHHc------------CCcccCCHHHHHHhCCEEEEec
Confidence 3799999999999999999 89999999999998763 2222211 2334468899999999999875
No 81
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.61 E-value=0.0017 Score=56.32 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=91.9
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++|+.+.+.. .++++++..+ ..++. .+++..+.. | =+|.+....
T Consensus 51 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--K-------DVDGl~~~n 120 (279)
T PRK14178 51 CERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--K-------DVDGFHPLN 120 (279)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCChhh
Confidence 345587776665544 3577777776542 4678888643 23443 344444443 3 223222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~ 183 (244)
. |-...+.+ .+.+.++.-++.++=. .+.++.|++|.|+|.+ ..|+.+|.+
T Consensus 121 ~---g~l~~~~~-~~~PcTp~av~~ll~~-------------------------~~i~l~Gk~V~ViGrs~~vGrpla~l 171 (279)
T PRK14178 121 L---GRLVSGLP-GFAPCTPNGIMTLLHE-------------------------YKISIAGKRAVVVGRSIDVGRPMAAL 171 (279)
T ss_pred H---HHHhCCCC-CCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCccccHHHHHH
Confidence 1 11111222 3567777766654422 2346999999999999 899999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..+|++|..+.++. .+|.+.+++||+|+..+
T Consensus 172 L-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Av 203 (279)
T PRK14178 172 L-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAA 203 (279)
T ss_pred H-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECC
Confidence 8 89999998887542 36999999999999753
No 82
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.0025 Score=55.38 Aligned_cols=144 Identities=17% Similarity=0.237 Sum_probs=90.9
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++.+..++ ..+++++.+.+.. .+|++++..+ ..+++ .+++..+.. |= +|.+-...
T Consensus 55 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~~N 124 (282)
T PRK14169 55 AEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KD-------VDGFSPVS 124 (282)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCChhh
Confidence 345588877666544 3577777776543 4578888643 23443 345555443 32 22221110
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+.+ .+.++++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 125 ~---g~l~~~~~-~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l 175 (282)
T PRK14169 125 V---GRLWANEP-TVVASTPYGIMALLDA-------------------------YDIDVAGKRVVIVGRSNIVGRPLAGL 175 (282)
T ss_pred h---HHHhcCCC-CCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence 0 11111222 3567777776665522 23469999999999987 59999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+.... .+|.+..++||+|+..+
T Consensus 176 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~Av 207 (282)
T PRK14169 176 M-VNHDATVTIAHSKT----------------------------RNLKQLTKEADILVVAV 207 (282)
T ss_pred H-HHCCCEEEEECCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence 9 78899998876431 37999999999999864
No 83
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.58 E-value=0.00027 Score=61.46 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=46.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
.+++|+|+|++|+.+++.| ..-| .+|.+++|+..+..+.....+ . ......+..++++++|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L-~~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKL-LETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHH-HHCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence 3699999999999999998 5556 689999987543222211111 0 1112357889999999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 70 lav 72 (277)
T PRK06928 70 ICV 72 (277)
T ss_pred Eec
Confidence 874
No 84
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.58 E-value=0.00036 Score=57.79 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=49.1
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
++++|+|.|+||..+|+++ ..-|-+|+.-+++..+..+...+.. .. ...-.+.++..+.+|+|++.+
T Consensus 2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l----------~~-~i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAAL----------GP-LITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhh----------cc-ccccCChHHHHhcCCEEEEec
Confidence 4799999999999999998 7999999988776654333222111 11 122357899999999999864
No 85
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.57 E-value=0.00017 Score=63.74 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=50.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+.|++|+|+|.|.||+.+++.| +..| .+|..++|++... +++...+| . .....+++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~g-------~---~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKELG-------G---NAVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHcC-------C---eEEeHHHHHHHHhcCCEEE
Confidence 6889999999999999999998 6766 4799999986431 23322221 1 1222346888899999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
.+.
T Consensus 244 ~at 246 (311)
T cd05213 244 SAT 246 (311)
T ss_pred ECC
Confidence 763
No 86
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.55 E-value=0.00028 Score=62.66 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=50.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHH--HHHHhhhhhhhhcCC----CCCccccccCCHHHHhhhCCE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANG----EQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ell~~sD~ 239 (244)
++|||||.|.+|..+|..+ ...|++|..||+++.... .......-....+.+ ...-......++++.++.||+
T Consensus 8 ~~VaVIGaG~MG~giA~~~-a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARA-LAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 5899999999999999998 588999999999875421 111110000000010 000122345689999999999
Q ss_pred EEEeC
Q 026023 240 VCTLC 244 (244)
Q Consensus 240 Vvl~~ 244 (244)
|+-++
T Consensus 87 ViEav 91 (321)
T PRK07066 87 IQESA 91 (321)
T ss_pred EEECC
Confidence 98653
No 87
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.003 Score=54.84 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=88.2
Q ss_pred HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHHH
Q 026023 34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNAA 105 (244)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~~ 105 (244)
++.|++.+.+..++ ..+++++.+.+.. ..+++++..+ ..++. .+++..+.. |= +|.+.....
T Consensus 57 ~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~~n~ 126 (281)
T PRK14183 57 DRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KD-------VDGFHPYNV 126 (281)
T ss_pred HHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hc-------ccccChhhh
Confidence 44577776655544 2467777765432 4678888643 23443 344444443 32 222211111
Q ss_pred hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHHH
Q 026023 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARMM 184 (244)
Q Consensus 106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~l 184 (244)
|-...+. ..+.+.++.-++.++=. .+.++.||++.|+|-+ -+|+-+|.+|
T Consensus 127 ---g~l~~g~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~~VG~Pla~lL 177 (281)
T PRK14183 127 ---GRLVTGL-DGFVPCTPLGVMELLEE-------------------------YEIDVKGKDVCVVGASNIVGKPMAALL 177 (281)
T ss_pred ---hHHhcCC-CCCCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCcchHHHHHHH
Confidence 1111111 23566677666554321 2347999999999999 7899999999
Q ss_pred hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
..-|+.|..+... ..+|.+..++||+|+..+
T Consensus 178 -~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~Av 208 (281)
T PRK14183 178 -LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGV 208 (281)
T ss_pred -HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEec
Confidence 7889999877532 147999999999999864
No 88
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.54 E-value=0.00037 Score=59.06 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCC---cE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFK---MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG---~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
+.+|||+|.|++|+.+++.+ ..-| .+ ++.++|+..+..++..+.+ +.....+++++++++|+|
T Consensus 4 ~~kI~iIG~G~mg~ala~~l-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiV 70 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGL-LKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTI 70 (245)
T ss_pred CCeEEEECcCHHHHHHHHHH-HhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEE
Confidence 46899999999999999987 3433 44 7778875333223322211 122346889999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
++++
T Consensus 71 iiav 74 (245)
T PRK07634 71 VLAM 74 (245)
T ss_pred EEec
Confidence 9874
No 89
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.0033 Score=54.76 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=89.9
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++....++ ..+++++.+.+.. ..|++++..+ ..++.. +++..+.. | =+|.+....
T Consensus 54 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~~N 123 (287)
T PRK14173 54 AKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--K-------DVDGFHPLN 123 (287)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------cccccChhh
Confidence 345588777665544 2467777765542 4678888643 234433 44444443 3 222222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+. ..+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 124 ~---g~l~~~~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l 174 (287)
T PRK14173 124 V---GRLWMGG-EALEPCTPAGVVRLLKH-------------------------YGIPLAGKEVVVVGRSNIVGKPLAAL 174 (287)
T ss_pred h---HHHhcCC-CCCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCccHHHHHHH
Confidence 1 1111111 23567777776665432 23569999999999876 69999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+.... .+|.+..++||+|+..+
T Consensus 175 L-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIvIsAv 206 (287)
T PRK14173 175 L-LREDATVTLAHSKT----------------------------QDLPAVTRRADVLVVAV 206 (287)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEec
Confidence 9 78899998876531 37999999999999864
No 90
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.0035 Score=54.91 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=90.2
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. ..+++++..+ ..+++ .+++..+.. |= +|.+....
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~~n 126 (297)
T PRK14186 57 CARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--KD-------ADGLHPLN 126 (297)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence 345587777665543 3477777765542 4578888643 23443 345555444 32 23222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+. ..+.+++|.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 127 ~---g~l~~~~-~~~~PcTp~aii~lL~~-------------------------~~i~l~Gk~vvVIGrS~iVGkPla~l 177 (297)
T PRK14186 127 L---GRLVKGE-PGLRSCTPAGVMRLLRS-------------------------QQIDIAGKKAVVVGRSILVGKPLALM 177 (297)
T ss_pred H---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence 1 1111112 23456777666655422 23579999999999987 59999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+.... .+|.+..++||+|+..+
T Consensus 178 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvIsAv 209 (297)
T PRK14186 178 L-LAANATVTIAHSRT----------------------------QDLASITREADILVAAA 209 (297)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence 9 78899998886431 37999999999999864
No 91
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.0035 Score=54.34 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=90.0
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++....++ ..+++++.+.+.. +.+++++..+ ..++.. +++..+.. | =+|.+-...
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--K-------DVDGl~~~n 126 (278)
T PRK14172 57 ANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--K-------DIDCLTFIS 126 (278)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------ccCccCHhh
Confidence 345587777665543 3577777765543 4578888743 234433 44444443 3 222221111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+-+ .+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 127 ~---g~l~~g~~-~~~PcTp~av~~lL~~-------------------------~~i~l~Gk~vvViGrS~~VGkPla~l 177 (278)
T PRK14172 127 V---GKFYKGEK-CFLPCTPNSVITLIKS-------------------------LNIDIEGKEVVVIGRSNIVGKPVAQL 177 (278)
T ss_pred H---HHHhCCCC-CCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence 1 11111112 3466677666554422 23469999999999987 69999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+..+. .+|.+..++||+|+..+
T Consensus 178 L-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIvIsAv 209 (278)
T PRK14172 178 L-LNENATVTICHSKT----------------------------KNLKEVCKKADILVVAI 209 (278)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence 9 78899999887531 37999999999999764
No 92
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.50 E-value=0.00023 Score=65.58 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=52.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.+.|++|+|+|.|.+|+.+++.| +..|+ +|..++|++... +++...+| . ......++.+.+.++|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~g-------~---~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEFG-------G---EAIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHcC-------C---cEeeHHHHHHHhccCCEE
Confidence 37889999999999999999998 79998 799999986442 22222221 1 122335678889999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 247 I~a 249 (423)
T PRK00045 247 ISS 249 (423)
T ss_pred EEC
Confidence 976
No 93
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.49 E-value=0.0003 Score=65.11 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=48.3
Q ss_pred EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+| +|.+|+.+|+.| +..|.+|.+++|++... .+....+ +.....++.+.+.+||+|++++
T Consensus 2 kI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~-~~~a~~~------------gv~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKG-KEVAKEL------------GVEYANDNIDAAKDADIVIISV 66 (437)
T ss_pred EEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHH-HHHHHHc------------CCeeccCHHHHhccCCEEEEec
Confidence 799997 899999999998 89999999999986431 1211111 1223457889999999999875
No 94
>PLN00203 glutamyl-tRNA reductase
Probab=97.48 E-value=0.0003 Score=66.31 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=53.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
++.+++|+|+|.|.+|+.+++.| ...|+ +|..++|+... .+.+...+ +.....+...+++.+.+.++|+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~er-a~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEER-VAALREEF-------PDVEIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHH-HHHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence 37899999999999999999998 78998 69999998754 23322222 11111223446788999999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 334 IsA 336 (519)
T PLN00203 334 FTS 336 (519)
T ss_pred EEc
Confidence 876
No 95
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.47 E-value=0.00019 Score=62.99 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=44.8
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhhCCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~sD~Vvl~ 243 (244)
+|||||+|++|..+|+.| ...|.+|.+|||++.. .++..+ .+ .....+++++ ++++|+|+++
T Consensus 2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~-~~~l~~--------~g-----~~~~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDA-VKAMKE--------DR-----TTGVANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHH-HHHHHH--------cC-----CcccCCHHHHHhhcCCCCEEEEE
Confidence 699999999999999998 6789999999998754 222211 11 1112355554 4568999987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 67 v 67 (298)
T TIGR00872 67 V 67 (298)
T ss_pred c
Confidence 4
No 96
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.47 E-value=0.00045 Score=59.67 Aligned_cols=64 Identities=23% Similarity=0.405 Sum_probs=44.7
Q ss_pred EEEEEcCChHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++||+|+|+||+.+++.+ ... ++++. .+|+++.. .+++.+.+ +...+.++++++.++|+|+++
T Consensus 3 rIgIIG~G~iG~~ia~~l-~~~~~~~elv~v~d~~~~~-a~~~a~~~------------~~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 3 KIGIVGCGAIASLITKAI-LSGRINAELYAFYDRNLEK-AENLASKT------------GAKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred EEEEECccHHHHHHHHHH-HcCCCCeEEEEEECCCHHH-HHHHHHhc------------CCeeECCHHHHhcCCCEEEEc
Confidence 799999999999999987 443 67744 57776543 22222211 122346899999999999986
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
.
T Consensus 69 a 69 (265)
T PRK13304 69 A 69 (265)
T ss_pred C
Confidence 3
No 97
>PLN02858 fructose-bisphosphate aldolase
Probab=97.46 E-value=0.00024 Score=73.94 Aligned_cols=65 Identities=25% Similarity=0.379 Sum_probs=51.2
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
.++||+||+|++|..+|+.| ...|.+|.+|||++... +++.+ . +....++..+++++||+|++++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~-----Ga~~~~s~~e~~~~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRFEN--------A-----GGLAGNSPAEVAKDVDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH--------c-----CCeecCCHHHHHhcCCEEEEec
Confidence 47899999999999999998 79999999999987542 22111 1 1223468999999999999975
No 98
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.45 E-value=0.0003 Score=61.11 Aligned_cols=66 Identities=23% Similarity=0.440 Sum_probs=52.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
-+.||.+.|.|||..|+-.|..| ++||++|+...-.|--......+ .....+|+|..++.|+++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMe---------------G~~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAME---------------GYEVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhh---------------ccEeeeHHHhhhcCCEEE
Confidence 46899999999999999999999 99999999987766432222222 224568999999999998
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
-+
T Consensus 275 Tt 276 (434)
T KOG1370|consen 275 TT 276 (434)
T ss_pred Ec
Confidence 64
No 99
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.44 E-value=0.00019 Score=61.59 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=45.2
Q ss_pred EEEEEcCChHHHHHHHHHhccCCc---EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
+|||||+|++|+.+++.| ..-|. .+.+++|++.. .+++.+.+ . +.....+..++++++|+|+++
T Consensus 2 ~IgiIG~G~mG~aia~~L-~~~g~~~~~i~v~~r~~~~-~~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGL-LTSPADVSEIIVSPRNAQI-AARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred eEEEECcCHHHHHHHHHH-HhCCCChheEEEECCCHHH-HHHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence 699999999999999998 55553 35788887543 22222111 0 122346889999999999987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 69 v 69 (258)
T PRK06476 69 V 69 (258)
T ss_pred e
Confidence 4
No 100
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.43 E-value=0.00047 Score=60.68 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=49.5
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh----hhhhhhhcCCC-C-CccccccCCHHHHhhhCCE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AYGQFLKANGE-Q-PVTWKRASSMDEVLREADV 239 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~~~~~l~ell~~sD~ 239 (244)
++|+|||.|.+|..+|..| ..-|.+|..+|++.... +...+ ..+........ . ........++.+.+++||+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGAL-ERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 5799999999999999998 67899999999976541 21111 11110000000 0 0001233578889999999
Q ss_pred EEEeC
Q 026023 240 VCTLC 244 (244)
Q Consensus 240 Vvl~~ 244 (244)
|++++
T Consensus 83 Vi~av 87 (311)
T PRK06130 83 VIEAV 87 (311)
T ss_pred EEEec
Confidence 99874
No 101
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.43 E-value=0.0003 Score=58.76 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH-hccCCcEEEE-Ec
Q 026023 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM-VEGFKMNLIY-YD 196 (244)
Q Consensus 119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~l-a~afG~~V~~-~~ 196 (244)
.+.+.++|.+..++...|++. . +. ..++++|+|+|.+|+.+++.+ ....|+++.+ +|
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l---------~---~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D 117 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKIL---------G---LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD 117 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHh---------C---CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence 345556699999999888874 1 10 235899999999999999852 1467898776 56
Q ss_pred CCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEEEeC
Q 026023 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVCTLC 244 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vvl~~ 244 (244)
+.+... . . .....++...+++.+++++ .|.|++++
T Consensus 118 ~d~~~~-~-------~-----~i~g~~v~~~~~l~~li~~~~iD~ViIa~ 154 (213)
T PRK05472 118 VDPEKI-G-------T-----KIGGIPVYHIDELEEVVKENDIEIGILTV 154 (213)
T ss_pred CChhhc-C-------C-----EeCCeEEcCHHHHHHHHHHCCCCEEEEeC
Confidence 543221 0 0 0011223345678999876 99998864
No 102
>PRK07680 late competence protein ComER; Validated
Probab=97.41 E-value=0.00063 Score=58.86 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=46.6
Q ss_pred EEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
++||||+|++|+.+++.| ..-| ..|.+++|++.. .+...+.+ .+.....+..++++++|+|++
T Consensus 2 ~I~iIG~G~mG~ala~~L-~~~g~~~~~~v~v~~r~~~~-~~~~~~~~-----------~g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAF-LESGAVKPSQLTITNRTPAK-AYHIKERY-----------PGIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCHHH-HHHHHHHc-----------CCeEEECCHHHHHHhCCEEEE
Confidence 699999999999999998 5666 379999998643 22221111 012234578899999999998
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 69 av 70 (273)
T PRK07680 69 CV 70 (273)
T ss_pred ec
Confidence 74
No 103
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.40 E-value=0.0052 Score=53.43 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=89.7
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccCc--cccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLTE--DWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~~--~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++.+..++ ..+++++.+.+.. ..|++++..+. .+++ .+++..+.. |= +|.+....
T Consensus 58 ~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~~n 127 (284)
T PRK14177 58 CHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KD-------VDGVTTLS 127 (284)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cccCChhh
Confidence 455688877665544 2477777665432 56888886432 2433 344444443 32 22222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+. ..+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 128 ~---g~l~~g~-~~~~PcTp~avi~ll~~-------------------------y~i~l~Gk~vvViGrS~iVGkPla~l 178 (284)
T PRK14177 128 F---GKLSMGV-ETYLPCTPYGMVLLLKE-------------------------YGIDVTGKNAVVVGRSPILGKPMAML 178 (284)
T ss_pred H---HHHHcCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 1111121 23466677666553321 23469999999999987 69999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..++... .+|.+..++||+|+..+
T Consensus 179 L-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAv 210 (284)
T PRK14177 179 L-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAV 210 (284)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeC
Confidence 9 78899999887532 47999999999999764
No 104
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.38 E-value=0.00047 Score=58.22 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=33.5
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
.++.|+++.|.|||++|+.+|++| ..+|++|+++..+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECC
Confidence 358999999999999999999998 8999999977665
No 105
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.37 E-value=0.00059 Score=59.12 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=43.1
Q ss_pred EEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|||+|.+|+.+|+.| +.-| .+|.++|+++... +.. ... +. . ....++.++. ++|+|++++
T Consensus 2 ~I~iIG~G~mG~sla~~l-~~~g~~~~v~~~d~~~~~~-~~~-~~~-------g~--~--~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLAL-KEKGLISKVYGYDHNELHL-KKA-LEL-------GL--V--DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHH-HhcCCCCEEEEEcCCHHHH-HHH-HHC-------CC--C--cccCCHHHHh-cCCEEEEeC
Confidence 699999999999999998 5556 4899999986542 111 111 11 0 0123677765 499999975
No 106
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0004 Score=60.43 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=44.1
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEE--EEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHhhhCCEEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVVC 241 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~sD~Vv 241 (244)
..+|+|+|+|.||+.+|+.| +.-|..+ +++|++........ ...+......+ +.+.++.+|+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a~------------~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAAL------------ELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHHh------------hcCcccccccchhhhhcccCCEEE
Confidence 35899999999999999998 8999977 55555443321110 01111111123 378888999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 70 vav 72 (279)
T COG0287 70 VAV 72 (279)
T ss_pred Eec
Confidence 975
No 107
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.37 E-value=0.00057 Score=60.52 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=45.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccC-CcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.+|||+|+|+||+.+++.+ ... ++++.+ +++++.....+ ..++....+.++++.+.|+|++|
T Consensus 4 IRVgIVG~GnIGr~~a~al-~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIc 67 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAI-QQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILC 67 (324)
T ss_pred cEEEEEeecHHHHHHHHHH-HhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEc
Confidence 5899999999999999998 555 899887 57774221111 12233345788888999999987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 68 t 68 (324)
T TIGR01921 68 M 68 (324)
T ss_pred C
Confidence 4
No 108
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.0081 Score=52.62 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=88.4
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++++.+.+.. ..+++++..+ ..+++ .+++.++.. |= +|.+....
T Consensus 56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~~n 125 (297)
T PRK14167 56 CEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KD-------VDGFHPEN 125 (297)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence 355688877666544 3467777765543 4578888743 23443 344444443 32 22221111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+. ..+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 126 ~---g~l~~g~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l 176 (297)
T PRK14167 126 V---GRLVAGD-ARFKPCTPHGIQKLLAA-------------------------AGVDTEGADVVVVGRSDIVGKPMANL 176 (297)
T ss_pred h---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCcccHHHHHHH
Confidence 1 1111121 23567777766655422 23469999999999987 69999999
Q ss_pred HhccC---CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~af---G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|.+.+ ++.|..+... ..+|.+..++||+|+..+
T Consensus 177 L~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAv 212 (297)
T PRK14167 177 LIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAA 212 (297)
T ss_pred HhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcc
Confidence 84333 8999887543 147999999999999853
No 109
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.34 E-value=0.0072 Score=52.94 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=89.1
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. .++++++..+ ..+++ .+++..+.. | =+|.+....
T Consensus 64 a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--K-------DVDGl~~~n 133 (299)
T PLN02516 64 CAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--K-------DVDGFHPLN 133 (299)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--c-------ccCccCHhh
Confidence 345577776655543 3477777766543 4578888643 23443 344444433 3 223222111
Q ss_pred HhhCCcEEEe-cCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023 105 ANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (244)
Q Consensus 105 ~~~~gI~v~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~ 182 (244)
. |-...+ ....+.++++.-++.++=. .+.++.||++.|+|-+. +|+-+|.
T Consensus 134 ~---g~l~~~~~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvVIGRS~iVGkPla~ 185 (299)
T PLN02516 134 I---GKLAMKGREPLFLPCTPKGCLELLSR-------------------------SGIPIKGKKAVVVGRSNIVGLPVSL 185 (299)
T ss_pred H---hhHhcCCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence 1 111111 0123467777765554321 23579999999999987 5999999
Q ss_pred HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+| ..-|+.|..+.... .++++..++||+|+..+
T Consensus 186 lL-~~~~ATVtvchs~T----------------------------~nl~~~~~~ADIvv~Av 218 (299)
T PLN02516 186 LL-LKADATVTVVHSRT----------------------------PDPESIVREADIVIAAA 218 (299)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence 99 78899999886431 37999999999999764
No 110
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.34 E-value=0.00065 Score=59.22 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=49.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc---CC-CC-------CccccccCCHHHHh
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA---NG-EQ-------PVTWKRASSMDEVL 234 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-------~~~~~~~~~l~ell 234 (244)
++|+|||.|.+|..+|..| ..-|.+|+.||+++... +...+........ .+ .. ........++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 5799999999999999998 57799999999987542 2211100000000 00 00 00112346888999
Q ss_pred hhCCEEEEeC
Q 026023 235 READVVCTLC 244 (244)
Q Consensus 235 ~~sD~Vvl~~ 244 (244)
++||+|+.++
T Consensus 80 ~~aD~Vi~av 89 (288)
T PRK09260 80 ADADLVIEAV 89 (288)
T ss_pred cCCCEEEEec
Confidence 9999999874
No 111
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.33 E-value=0.00071 Score=59.64 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=48.9
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh----hhhhhhhcCCCCC--------ccccccCCHHHH
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AYGQFLKANGEQP--------VTWKRASSMDEV 233 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~l~el 233 (244)
++|+|+|.|.+|..+|..| ..-|.+|++||+++... +.... .+..+. ..+... -......++.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~-~~~~~~~~~~l~~l~-~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAA-AAAPAYIAGRLEDLA-AFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHH-HHHHHHHHHHHHHHH-HcCCCchhhHHHHhcCeEEECcHHHh
Confidence 3799999999999999998 67799999999986431 11000 000000 011000 001234689999
Q ss_pred hhhCCEEEEeC
Q 026023 234 LREADVVCTLC 244 (244)
Q Consensus 234 l~~sD~Vvl~~ 244 (244)
++.||+|+.++
T Consensus 80 ~~~ad~Vi~av 90 (308)
T PRK06129 80 VADADYVQESA 90 (308)
T ss_pred hCCCCEEEECC
Confidence 99999998763
No 112
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.32 E-value=0.00082 Score=55.07 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=50.9
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
..+.++++.|+|. |.+|+.+++.| ...|.+|..++|+... .++..+.+.... ............+++.+.++++|+
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~-~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~di 100 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLER-AQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADV 100 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCE
Confidence 3578899999995 99999999998 6789999999998643 233322221000 000001111222455688999998
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
|+.+
T Consensus 101 Vi~a 104 (194)
T cd01078 101 VFAA 104 (194)
T ss_pred EEEC
Confidence 8764
No 113
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00087 Score=57.80 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=50.1
Q ss_pred CEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
.++|++|+|++|+.++.-| ..-| -+|++.+|+..... ...+.|| .....+..++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g------------~~~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYG------------VVTTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcC------------CcccCcHHHHHhhCCEEE
Confidence 4799999999999999998 7777 58999999876532 3333432 112568899999999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 68 Lav 70 (266)
T COG0345 68 LAV 70 (266)
T ss_pred EEe
Confidence 975
No 114
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.32 E-value=0.001 Score=59.07 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=49.3
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc-CCCC-CccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQ-PVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.+|+|+|.|.+|..+|..| ..-|.+|..|+|++... +.... .+..... .+.. ........++.+.++.+|+|+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L-~~~G~~V~~~~r~~~~~-~~i~~-~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLA-ASKGVPVRLWARRPEFA-AALAA-ERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHH-hCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 4799999999999999998 57799999999976431 22111 0000000 0000 00122446899999999999987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 82 v 82 (328)
T PRK14618 82 V 82 (328)
T ss_pred C
Confidence 4
No 115
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.31 E-value=0.0087 Score=52.09 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=88.3
Q ss_pred HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHHH
Q 026023 34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNAA 105 (244)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~~ 105 (244)
++.|++.+.+..++ ..+++++.+.+.. .++++++..+ ..++. ++++..+.. |= +|.+.....
T Consensus 58 ~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KD-------VDGl~~~n~ 127 (284)
T PRK14193 58 AEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KD-------ADGLHPTNL 127 (284)
T ss_pred HHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cC-------ccCCChhhh
Confidence 44577776655443 3577777765543 4578888643 23443 345555444 32 222211111
Q ss_pred hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHHH
Q 026023 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARMM 184 (244)
Q Consensus 106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~l 184 (244)
|-...+.++ +.++++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+|
T Consensus 128 ---g~l~~~~~~-~~PcTp~av~~ll~~-------------------------~~i~l~Gk~vvViGrS~~VGkPla~lL 178 (284)
T PRK14193 128 ---GRLVLNEPA-PLPCTPRGIVHLLRR-------------------------YDVELAGAHVVVIGRGVTVGRPIGLLL 178 (284)
T ss_pred ---hHHhCCCCC-CCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHHH
Confidence 111122222 356677766655421 23579999999999876 699999998
Q ss_pred hcc--CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 185 VEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 185 a~a--fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
.. -|+.|..+.... .+|.+..++||+|+..+
T Consensus 179 -~~~~~~atVtvchs~T----------------------------~~l~~~~k~ADIvV~Av 211 (284)
T PRK14193 179 -TRRSENATVTLCHTGT----------------------------RDLAAHTRRADIIVAAA 211 (284)
T ss_pred -hhccCCCEEEEeCCCC----------------------------CCHHHHHHhCCEEEEec
Confidence 55 789998887531 47999999999999863
No 116
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.30 E-value=0.00038 Score=60.71 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=46.1
Q ss_pred EEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 170 IvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|||+|.+|..+|+.| ...|.+|.+|||++.. .++..+ . +.....++.+++++||+|++++
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~-~~~l~~--------~-----g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDA-VEEAVA--------A-----GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHH-HHHHHH--------c-----CCeecCCHHHHHhcCCEEEEeC
Confidence 589999999999998 7889999999998754 222111 1 1223468999999999999975
No 117
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.30 E-value=0.00078 Score=59.39 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=48.7
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+|.|.+|..+|..| ..-|.+|..|+|++... +..-. .+........ ...+.....++++.++.+|+|++++
T Consensus 3 kI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINA-DRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred EEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHH-cCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 699999999999999998 57799999999976431 21111 0000000000 0012223457888999999999875
No 118
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.30 E-value=0.00055 Score=67.30 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=48.2
Q ss_pred CEEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++|||+|+|.+|+.+++.+ +..| .+|+++|++.... +. ...+ +.. .....++++.++++|+|+++
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~-~~-a~~~-------g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSL-EL-AVSL-------GVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHH-HH-HHHC-------CCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999998 7877 5899999986542 11 1111 110 01235788999999999998
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 71 v 71 (735)
T PRK14806 71 V 71 (735)
T ss_pred C
Confidence 5
No 119
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.0095 Score=51.95 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++++.+.+.. .+|++++..+ ..+++ .+++..+.. |= +|.+...
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KD-------VDGl~~~- 125 (288)
T PRK14171 57 AHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KD-------IDGFHPL- 125 (288)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cccCCcc-
Confidence 355588777665543 3577888776542 4678888743 23443 344544443 32 2222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
..|-........+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 126 --N~g~l~~g~~~~~~PcTp~av~~lL~~-------------------------y~i~l~GK~vvViGrS~iVGkPla~l 178 (288)
T PRK14171 126 --NVGYLHSGISQGFIPCTALGCLAVIKK-------------------------YEPNLTGKNVVIIGRSNIVGKPLSAL 178 (288)
T ss_pred --chhhhhcCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence 111112221123566677665544311 13469999999999987 59999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+..+. .+|.+..++||+|+..+
T Consensus 179 L-~~~~ATVtichs~T----------------------------~~L~~~~~~ADIvV~Av 210 (288)
T PRK14171 179 L-LKENCSVTICHSKT----------------------------HNLSSITSKADIVVAAI 210 (288)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence 9 78899998776431 47999999999999864
No 120
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.28 E-value=0.00088 Score=55.55 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=50.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.++.|++|.|+|.|.+|...++.| ...|++|..+++...++..+..+. ..+.+..-.-.++-+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~----------~~i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEE----------GKIRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhC----------CCEEEEecCCChhhcCCceEE
Confidence 469999999999999999999998 789999999998765543332211 111111111224567889988
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 75 iaa 77 (202)
T PRK06718 75 IAA 77 (202)
T ss_pred EEc
Confidence 865
No 121
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.011 Score=51.47 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=91.1
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. .++++++..+ ..+++ .+++..+.. | =+|.+....
T Consensus 55 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~~n 124 (282)
T PRK14182 55 CEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHPFN 124 (282)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCHhH
Confidence 355588777666544 3477777766532 4678888743 23443 344444443 3 223332111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+.++.+.+.+|.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 125 ~---g~l~~g~~~~~~PcTp~avi~ll~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l 176 (282)
T PRK14182 125 V---GALSIGIAGVPRPCTPAGVMRMLDE-------------------------ARVDPKGKRALVVGRSNIVGKPMAMM 176 (282)
T ss_pred H---HHHhCCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 2122222332466777666655422 13468999999999987 69999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+..+. .+|.+..++||+|+..+
T Consensus 177 L-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI~Av 208 (282)
T PRK14182 177 L-LERHATVTIAHSRT----------------------------ADLAGEVGRADILVAAI 208 (282)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEec
Confidence 9 78899999887532 37999999999999763
No 122
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.27 E-value=0.0012 Score=52.44 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=48.5
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC--CCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN--GEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+|.|+.|.++|..| ..-|-+|..|+|.... .+. .+..+.-.... ........-..++++.++.||+|++.+
T Consensus 1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~-~~~-i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQ-IEE-INETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHH-HHH-HHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHH-HHH-HHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 589999999999999998 7899999999998633 222 21111000000 000112234578999999999999864
No 123
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.27 E-value=0.011 Score=53.00 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=88.9
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHh---cC--CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALI---GD--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~---~~--~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++|+.+.+ .+ .+|++++..+ ..+++ .+++..+.. | =+|.+....
T Consensus 128 ~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--K-------DVDGl~p~N 197 (364)
T PLN02616 128 CDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--K-------DVDGFHPLN 197 (364)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCChhh
Confidence 355577766555443 34777777665 22 4688888743 23443 345555444 3 223222111
Q ss_pred HhhCCcEEEe-cCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023 105 ANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (244)
Q Consensus 105 ~~~~gI~v~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~ 182 (244)
. |-...+ ....+...++.-++.++=. .+.++.||++.|||-++ +|+-+|.
T Consensus 198 ~---G~L~~g~~~~~f~PCTp~avielL~~-------------------------y~i~l~GK~vvVIGRS~iVGkPLa~ 249 (364)
T PLN02616 198 I---GRLAMRGREPLFVPCTPKGCIELLHR-------------------------YNVEIKGKRAVVIGRSNIVGMPAAL 249 (364)
T ss_pred h---HHHhcCCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccccHHHHH
Confidence 1 111111 0123466777665543321 13469999999999987 5999999
Q ss_pred HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+| ..-|+.|..+.... .++.+..++||+|+..+
T Consensus 250 LL-~~~~ATVTicHs~T----------------------------~nl~~~~r~ADIVIsAv 282 (364)
T PLN02616 250 LL-QREDATVSIVHSRT----------------------------KNPEEITREADIIISAV 282 (364)
T ss_pred HH-HHCCCeEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence 99 78899999886431 47999999999999763
No 124
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.26 E-value=0.0095 Score=52.08 Aligned_cols=144 Identities=16% Similarity=0.168 Sum_probs=88.6
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++++.+.+.+ .+|++++..+ ..+++ .+++..+.. | =+|.+...-
T Consensus 56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~~N 125 (293)
T PRK14185 56 CEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHPIN 125 (293)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCHhh
Confidence 355687776655544 3467777754432 4678888643 23443 344444443 3 223322111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
+ |-...+. ..+.++++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 126 ~---g~l~~~~-~~~~PcTp~av~~lL~~-------------------------~~i~l~GK~vvViGrS~iVGkPla~l 176 (293)
T PRK14185 126 V---GRMSIGL-PCFVSATPNGILELLKR-------------------------YHIETSGKKCVVLGRSNIVGKPMAQL 176 (293)
T ss_pred H---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence 1 1111122 23567777776665422 23469999999999987 59999999
Q ss_pred HhccC----CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~af----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..- ++.|..+.... .+|.+..++||+|+..+
T Consensus 177 L-~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADIvIsAv 212 (293)
T PRK14185 177 M-MQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADIIIAAL 212 (293)
T ss_pred H-HcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence 8 443 79998886431 47999999999999764
No 125
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.015 Score=50.68 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=90.4
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++.+..++ ..+++|+.+.+.. +++++++..+ ..+++ .+++..+.. | =+|.+....
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--K-------DVDGl~~~n 126 (284)
T PRK14190 57 AEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--K-------DVDGFHPIN 126 (284)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCHhh
Confidence 345588877666554 3477777766542 4578888643 23443 344444443 3 223332111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
+ |-...+.+ .+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 127 ~---g~l~~~~~-~~~PcTp~av~~lL~~-------------------------~~i~l~Gk~vvViGrS~iVG~Pla~l 177 (284)
T PRK14190 127 V---GRMMLGQD-TFLPCTPHGILELLKE-------------------------YNIDISGKHVVVVGRSNIVGKPVGQL 177 (284)
T ss_pred H---HHHhcCCC-CCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCccHHHHHHH
Confidence 1 11112222 3567777776665422 23579999999999987 69999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..++.. ..+|.+.+++||+|+..+
T Consensus 178 L-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~Av 209 (284)
T PRK14190 178 L-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAV 209 (284)
T ss_pred H-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEec
Confidence 9 7889999888642 137999999999999753
No 126
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.25 E-value=0.00094 Score=57.45 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=43.1
Q ss_pred CEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
.+|||+|+|++|+.+++.| ..-| -++.+++|+.... +.....+..+++.+||+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l-~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~Vi 62 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGI-ENSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDIIV 62 (260)
T ss_pred CEEEEECccHHHHHHHHHH-HhCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEEE
Confidence 4799999999999999998 4444 2488888864320 1122357788899999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 63 lav 65 (260)
T PTZ00431 63 LAV 65 (260)
T ss_pred EEe
Confidence 874
No 127
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0008 Score=60.01 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=49.4
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
++||||+|-|..|+.++.- |+.+|.+|+..|+.+........+. .-... +.....+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~~-------~i~~~--~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVADR-------VIVAA--YDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhcccc-------eeecC--CCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999 6999999999999887643332110 00000 1112368999999999974
No 128
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.23 E-value=0.00077 Score=62.66 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=34.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+.+++|+|+|+|..|+.+|+.| +..|++|.++|+++.
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSE 48 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCC
Confidence 6789999999999999999998 899999999998764
No 129
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.23 E-value=0.00099 Score=60.76 Aligned_cols=70 Identities=27% Similarity=0.300 Sum_probs=55.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
+|.++++.|||+|.+|+-+|+.| ..-|. +|+..+|+... .++..+.+| ..+...+++.+.+.++|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~er-A~~La~~~~----------~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLER-AEELAKKLG----------AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHH-HHHHHHHhC----------CeeecHHHHHHhhhhCCEE
Confidence 38999999999999999999999 79996 68888888754 344444332 2345667899999999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 243 iss 245 (414)
T COG0373 243 ISS 245 (414)
T ss_pred EEe
Confidence 976
No 130
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.23 E-value=0.014 Score=50.93 Aligned_cols=145 Identities=16% Similarity=0.211 Sum_probs=89.4
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.+ .++++++..+ ..+++ .+++..+.. |= +|.+....
T Consensus 51 ~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p~n 120 (287)
T PRK14181 51 ATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KD-------VDGLHPVN 120 (287)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cC-------cccCChhh
Confidence 345577776665544 3477777766532 5688988753 23444 345555444 32 22222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+....+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 121 ~---g~l~~g~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l 172 (287)
T PRK14181 121 M---GKLLLGETDGFIPCTPAGIIELLKY-------------------------YEIPLHGRHVAIVGRSNIVGKPLAAL 172 (287)
T ss_pred H---HHHhcCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence 1 1111111123567777766655421 13469999999999987 59999999
Q ss_pred HhccC----CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~af----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..- |+.|..+.... .+|++.+++||+|+..+
T Consensus 173 L-~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADIvV~Av 208 (287)
T PRK14181 173 L-MQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADIIIAAI 208 (287)
T ss_pred H-HhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence 9 555 78998876431 37999999999999764
No 131
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.22 E-value=0.00073 Score=58.68 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=53.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+...+++|+||+|.-|..+++-| -.-|.+|++|||+.+.. .+|.+ - +..-..+..|+.+.||+|+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~-~~f~~-~------------Ga~v~~sPaeVae~sDvvi 96 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKC-KEFQE-A------------GARVANSPAEVAEDSDVVI 96 (327)
T ss_pred CcccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHH-HHHHH-h------------chhhhCCHHHHHhhcCEEE
Confidence 34678999999999999999998 89999999999998763 22221 1 1223468999999999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
.++
T Consensus 97 tmv 99 (327)
T KOG0409|consen 97 TMV 99 (327)
T ss_pred EEc
Confidence 764
No 132
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.013 Score=51.26 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=89.7
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. .++++++..+ ..+++ .+++..+.. |= +|.+....
T Consensus 57 a~~~Gi~~~~~~l~~-~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~~n 126 (294)
T PRK14187 57 AEMLGLRSETILLPS-TISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--KD-------VDGFHNEN 126 (294)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence 345588777665544 2467777655432 4578888643 23443 345555444 32 22222111
Q ss_pred HhhCCcEEEecC-CCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023 105 ANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (244)
Q Consensus 105 ~~~~gI~v~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~ 182 (244)
. |-...+.. ..+.++++.-++.++=. .+.++.||++.|+|-+. +|+-+|.
T Consensus 127 ~---g~l~~g~~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~ 178 (294)
T PRK14187 127 V---GRLFTGQKKNCLIPCTPKGCLYLIKT-------------------------ITRNLSGSDAVVIGRSNIVGKPMAC 178 (294)
T ss_pred H---HHHhCCCCCCCccCcCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence 1 11111111 23466677766544321 23569999999999987 6999999
Q ss_pred HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+| ..-|+.|..+.... .+|.+..++||+|+..+
T Consensus 179 lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~ADIvVsAv 211 (294)
T PRK14187 179 LL-LGENCTVTTVHSAT----------------------------RDLADYCSKADILVAAV 211 (294)
T ss_pred HH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence 99 88999999887532 47999999999999864
No 133
>PLN02858 fructose-bisphosphate aldolase
Probab=97.21 E-value=0.00093 Score=69.71 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=52.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.+.+||+||+|.+|..+|+.| ..-|.+|.+|||++... +++.+ .+....++..|+.++||+|+++
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~~-------------~Ga~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKFCE-------------LGGHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH-------------cCCeecCCHHHHHhcCCEEEEE
Confidence 456899999999999999999 67899999999987542 33221 1233457999999999999987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 68 l 68 (1378)
T PLN02858 68 L 68 (1378)
T ss_pred c
Confidence 4
No 134
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.21 E-value=0.0078 Score=53.61 Aligned_cols=145 Identities=14% Similarity=0.216 Sum_probs=91.0
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++|+.+.+.. .+|+|++..+ ..+++. +++..+.. | =+|.+....
T Consensus 111 a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--K-------DVDGl~p~N 180 (345)
T PLN02897 111 CEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--K-------DVDGFHPLN 180 (345)
T ss_pred HHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CccCCCHHH
Confidence 345577777665544 3477777776542 4678888643 234443 44444333 3 223322111
Q ss_pred HhhCCcEEEe-cCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023 105 ANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (244)
Q Consensus 105 ~~~~gI~v~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~ 182 (244)
. |-.... ....+...++.-++.++-. .+.++.||++.|+|-++ +|+-+|.
T Consensus 181 ~---G~L~~~~~~~~~~PCTp~avi~LL~~-------------------------~~i~l~GK~vvVIGRS~iVGkPla~ 232 (345)
T PLN02897 181 V---GNLAMRGREPLFVSCTPKGCVELLIR-------------------------SGVEIAGKNAVVIGRSNIVGLPMSL 232 (345)
T ss_pred H---HHHhcCCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccccHHHHH
Confidence 1 111111 1123567777777766522 23569999999999987 5999999
Q ss_pred HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+| ..-|+.|..+.... .++.+..++||+|+..+
T Consensus 233 LL-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAv 265 (345)
T PLN02897 233 LL-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAA 265 (345)
T ss_pred HH-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence 99 78899998886431 37899999999999763
No 135
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.21 E-value=0.0016 Score=57.44 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=52.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..++++|+|.|.+|+..++.++..++. +|..|+|++.. .+.+.+.+.+ ...... ..+.++++++||+|+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~~~-------~~~~~~-~~~~~~av~~aDiVit 194 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHARA-------LGPTAE-PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHHHh-------cCCeeE-ECCHHHHhhcCCEEEE
Confidence 567999999999999999997445775 69999998754 3455444321 112222 4689999999999997
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 195 a 195 (304)
T PRK07340 195 A 195 (304)
T ss_pred c
Confidence 6
No 136
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.18 E-value=0.0012 Score=50.34 Aligned_cols=70 Identities=31% Similarity=0.504 Sum_probs=43.5
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
+|+|+|+ |+.|+.+++.+...=|++ +-++++.+++.... ..|.. .+....+..-.+++++++.++|+|+-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~~---~~~~~~~~~v~~~l~~~~~~~DVvID 73 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGEL---AGIGPLGVPVTDDLEELLEEADVVID 73 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHHH---CTSST-SSBEBS-HHHHTTH-SEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhhh---hCcCCcccccchhHHHhcccCCEEEE
Confidence 6999999 999999999984448888 44556655221111 11111 12223444456899999999999873
No 137
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.18 E-value=0.0021 Score=48.03 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=44.8
Q ss_pred EEEEEcCChHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023 167 TVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC 241 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv 241 (244)
++||||+|.+|+...+-+ ... +.++. .+|+++.. .+.+.+.+ +...+.+++++++ +.|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~-~~~~~~~~v~~v~d~~~~~-~~~~~~~~------------~~~~~~~~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRAL-LRSSPDFEVVAVCDPDPER-AEAFAEKY------------GIPVYTDLEELLADEDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTTTEEEEEEECSSHHH-HHHHHHHT------------TSEEESSHHHHHHHTTESEEE
T ss_pred EEEEECCcHHHHHHHHHH-HhcCCCcEEEEEEeCCHHH-HHHHHHHh------------cccchhHHHHHHHhhcCCEEE
Confidence 699999999999998776 444 66765 56766543 33333322 1225679999999 789998
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
++.
T Consensus 68 I~t 70 (120)
T PF01408_consen 68 IAT 70 (120)
T ss_dssp EES
T ss_pred Eec
Confidence 863
No 138
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.17 E-value=0.0016 Score=58.04 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=44.3
Q ss_pred EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhh--hhhhcCC----CCCccccccCCHHHHhhhCCEEE
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--QFLKANG----EQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
|||+|||+||+.+++.+...=+++|.++.....+..+.....+| ....... ...-+..-..++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999986334578988887632221111111111 1000000 00001112347999999999999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
.|.
T Consensus 81 e~T 83 (333)
T TIGR01546 81 DAT 83 (333)
T ss_pred ECC
Confidence 874
No 139
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.17 E-value=0.0011 Score=62.21 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=49.9
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh-------hhhhhhhcCCCCCc-cccccCCHHHHhhhC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-------AYGQFLKANGEQPV-TWKRASSMDEVLREA 237 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~l~ell~~s 237 (244)
++|||||.|.+|..+|..| ..-|.+|..||+++... +...+ .++.+ ........ .....+++.+.+++|
T Consensus 5 ~kIavIG~G~MG~~iA~~l-a~~G~~V~v~D~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARF-LLAGIDVAVFDPHPEAE-RIIGEVLANAERAYAML-TDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHHhhh-ccchhhhhhceEeeCCHHHHhcCC
Confidence 4799999999999999998 56799999999987552 11110 00000 00000000 123456899999999
Q ss_pred CEEEEeC
Q 026023 238 DVVCTLC 244 (244)
Q Consensus 238 D~Vvl~~ 244 (244)
|+|+.++
T Consensus 82 D~Vieav 88 (495)
T PRK07531 82 DWIQESV 88 (495)
T ss_pred CEEEEcC
Confidence 9999764
No 140
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.17 E-value=0.0016 Score=57.97 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=51.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..++++|+|.|.+|+..++.++...+. +|..++|++.. .+++.+.+.. . ....+..+.++++++++||+|+.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~-a~~~~~~~~~----~--~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK-AYAFAQEIQS----K--FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHHH----h--cCCcEEEeCCHHHHHhcCCEEEE
Confidence 456899999999999998776456677 69999998754 3444332210 0 11223346789999999999997
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 199 a 199 (325)
T PRK08618 199 V 199 (325)
T ss_pred c
Confidence 5
No 141
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.17 E-value=0.001 Score=61.15 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=54.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.+.|+++.|+|.|.+|+.+++.| ...|+ ++..++|+... .+.+.+.|+. ..+..++++.+.+.++|+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~~---------~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFRN---------ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhcC---------CeEecHHHHHHHhccCCEE
Confidence 47889999999999999999998 78996 79999998643 3443333310 1233456788999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
+.+.
T Consensus 247 I~aT 250 (414)
T PRK13940 247 IAAV 250 (414)
T ss_pred EECc
Confidence 9863
No 142
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.16 E-value=0.0018 Score=57.37 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=50.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..++++|+|.|..|+..++.+...++ -+|..|+|++.. .+++.+.+.+ . ...+....++++.+++||+|+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~~~----~---g~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAELRA----Q---GFDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHHh----c---CCceEEeCCHHHHHhcCCEEEE
Confidence 46799999999999999985534466 479999998754 3444443311 1 1123345789999999999965
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 196 a 196 (314)
T PRK06141 196 A 196 (314)
T ss_pred e
Confidence 3
No 143
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.16 E-value=0.012 Score=51.52 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=86.6
Q ss_pred HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHHH
Q 026023 34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNAA 105 (244)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~~ 105 (244)
++.|++.+.+..++ ..+++++.+.+.. ..|++++..+ ..+++. +++..+.. | =+|.+.....
T Consensus 59 ~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~~~n~ 128 (297)
T PRK14168 59 HRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--K-------DVDGFHPVNV 128 (297)
T ss_pred HHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------cccccChhhH
Confidence 44577776655443 3477777765543 4678888643 234433 44444433 3 2222211111
Q ss_pred hhCCcEEEec-CCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 106 NKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 106 ~~~gI~v~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
|-...+. ...+.+.++.-++.++-. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 129 ---g~l~~~~~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l 180 (297)
T PRK14168 129 ---GRLMIGGDEVKFLPCTPAGIQEMLVR-------------------------SGVETSGAEVVVVGRSNIVGKPIANM 180 (297)
T ss_pred ---HHHhcCCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcccHHHHHH
Confidence 1111111 123466677666655432 23579999999999987 69999999
Q ss_pred HhccC----CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~af----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..- |+.|..+... ..++.+..++||+|+..+
T Consensus 181 L-~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAv 216 (297)
T PRK14168 181 M-TQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAA 216 (297)
T ss_pred H-HhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEec
Confidence 8 554 7899877543 137999999999999763
No 144
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.015 Score=50.72 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+....++ ..+++++.+.+.. .+|++++..+ ..+++. +++..+.. | =+|.+....
T Consensus 56 ~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~~N 125 (286)
T PRK14184 56 CEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHPEN 125 (286)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCHhh
Confidence 355687777665543 3577877766542 4578888643 234433 34444333 3 223222111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+. ..+.+.++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 126 ~---g~l~~~~-~~~~PcTp~av~~lL~~-------------------------~~i~l~Gk~vvViGrS~iVG~Pla~l 176 (286)
T PRK14184 126 M---GRLALGL-PGFRPCTPAGVMTLLER-------------------------YGLSPAGKKAVVVGRSNIVGKPLALM 176 (286)
T ss_pred H---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence 1 1111122 23466777755543321 23569999999999987 59999999
Q ss_pred Hhcc----CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~a----fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| .. -|++|..+..+. .+|.+.+++||+|+..+
T Consensus 177 L-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~Av 212 (286)
T PRK14184 177 L-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAI 212 (286)
T ss_pred H-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEec
Confidence 9 66 689988877431 37999999999999764
No 145
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.13 E-value=0.017 Score=50.20 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=89.9
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++.+.+..++ ..+++++.+.+.. .++++++..+ ..+++ ++++..+.. |= +|.+....
T Consensus 55 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~~N 124 (282)
T PRK14166 55 CEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KD-------VDGFHPIN 124 (282)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence 345577776665543 3577778776542 4678888643 23443 344444443 32 22221111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+....+.++++.-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 125 ~---g~l~~g~~~~~~PcTp~avi~lL~~-------------------------y~i~l~Gk~vvVvGrS~iVGkPla~l 176 (282)
T PRK14166 125 V---GYLNLGLESGFLPCTPLGVMKLLKA-------------------------YEIDLEGKDAVIIGASNIVGRPMATM 176 (282)
T ss_pred h---HHHhcCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 1011110123567777766654422 23469999999999987 59999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+..+. .+|.+..++||+|+..+
T Consensus 177 L-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAv 208 (282)
T PRK14166 177 L-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAA 208 (282)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence 9 78899999877532 47999999999999864
No 146
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.13 E-value=0.0018 Score=53.79 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=51.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.++.|++|.|+|.|.+|.+-++.| ..+|++|..+++...++..+..+. + .+.+..-.--.+.+..+|+|
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~~--------~--~i~~~~~~~~~~dl~~~~lV 73 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAEQ--------G--GITWLARCFDADILEGAFLV 73 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHHc--------C--CEEEEeCCCCHHHhCCcEEE
Confidence 468999999999999999999998 799999999999877654443211 1 11121111124567889998
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 74 i~a 76 (205)
T TIGR01470 74 IAA 76 (205)
T ss_pred EEC
Confidence 875
No 147
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.13 E-value=0.034 Score=48.13 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=89.9
Q ss_pred HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHHH
Q 026023 34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNAA 105 (244)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~~ 105 (244)
++.|+....+..++ ..+++|+.+.+.+ .+++|++..+ ..+++ .+++....- | -+|.+-..
T Consensus 56 ~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~--K-------DVDG~hp~-- 123 (283)
T COG0190 56 EEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE--K-------DVDGFHPY-- 123 (283)
T ss_pred HHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC--C-------CccccChh--
Confidence 44576666555543 3577887776543 5678888643 23442 333433322 2 23333221
Q ss_pred hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH-HHHHHHHH
Q 026023 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARMM 184 (244)
Q Consensus 106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I-G~~vA~~l 184 (244)
.-|-...+ ....-..++.-++.++ . . .+.+++|+++.|||-++| |+-+|.+|
T Consensus 124 -N~g~L~~~-~~~~~PCTp~gi~~ll-~---~---------------------~~i~l~Gk~~vVVGrS~iVGkPla~lL 176 (283)
T COG0190 124 -NLGKLAQG-EPGFLPCTPAGIMTLL-E---E---------------------YGIDLRGKNVVVVGRSNIVGKPLALLL 176 (283)
T ss_pred -HhcchhcC-CCCCCCCCHHHHHHHH-H---H---------------------hCCCCCCCEEEEECCCCcCcHHHHHHH
Confidence 11333333 4444556665544432 2 1 235799999999999996 88999999
Q ss_pred hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
..-+++|..+..+. .++.+..++||+|+..+
T Consensus 177 -~~~naTVtvcHs~T----------------------------~~l~~~~k~ADIvv~Av 207 (283)
T COG0190 177 -LNANATVTVCHSRT----------------------------KDLASITKNADIVVVAV 207 (283)
T ss_pred -HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCEEEEec
Confidence 78999999988653 47999999999999864
No 148
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.12 E-value=0.02 Score=49.83 Aligned_cols=145 Identities=12% Similarity=0.182 Sum_probs=89.3
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++.+..++ ..+++++.+.+.. ..+++++..+ ..+++ ++++..+.. |= +|.+....
T Consensus 56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~~n 125 (282)
T PRK14180 56 CAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KD-------VDGFHPTN 125 (282)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cc-------ccccChhh
Confidence 345588877665543 2466777665432 4578888643 23443 344444443 32 22221111
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~ 183 (244)
. |-...+....+.+++++-++.++=. .+.++.||++.|+|-+. +|+-+|.+
T Consensus 126 ~---g~l~~g~~~~~~PcTp~aii~lL~~-------------------------y~i~l~Gk~vvViGrS~~VGkPla~l 177 (282)
T PRK14180 126 V---GRLQLRDKKCLESCTPKGIMTMLRE-------------------------YGIKTEGAYAVVVGASNVVGKPVSQL 177 (282)
T ss_pred H---HHHhcCCCCCcCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 1111111123466677766654422 23469999999999987 69999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
| ..-|+.|..+.... .+|.+..++||+|+..+
T Consensus 178 L-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADIvIsAv 209 (282)
T PRK14180 178 L-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAV 209 (282)
T ss_pred H-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCEEEEcc
Confidence 9 78899999887532 47999999999999864
No 149
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.11 E-value=0.0017 Score=56.46 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=50.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
++.++++.|+|.|.+|+.+++.| ..+| .+|..++|+... .++..+.++. .. ...+ ..++.+.+.++|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~-a~~l~~~~~~----~~--~~~~--~~~~~~~~~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVER-AEELAKLFGA----LG--KAEL--DLELQEELADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----cc--ceee--cccchhccccCCEE
Confidence 47889999999999999999998 7999 689999998754 2333332210 00 0111 12456788999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 190 Ina 192 (278)
T PRK00258 190 INA 192 (278)
T ss_pred EEC
Confidence 875
No 150
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.10 E-value=0.0012 Score=60.55 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=48.7
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhh--------hhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
+|||+|+|.+|..+|..| ..-|.+|++||+++... +..-... .....+. ...-......++.+.+++||
T Consensus 2 kI~vIGlG~~G~~lA~~L-a~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~-~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALL-ADLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKA-LAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEEECCCchhHHHHHHH-HhcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHh-hhcCCeEEECCHHHHHhhCC
Confidence 699999999999999998 57899999999987542 1110000 0000000 00000223457889999999
Q ss_pred EEEEeC
Q 026023 239 VVCTLC 244 (244)
Q Consensus 239 ~Vvl~~ 244 (244)
+|++++
T Consensus 79 vvii~v 84 (411)
T TIGR03026 79 VIIICV 84 (411)
T ss_pred EEEEEe
Confidence 999874
No 151
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.10 E-value=0.0018 Score=56.70 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=49.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcc--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
+.|+++.|+|.|.+|++++..| ...|++ |..++|+.. +..++..+.+..................++++.++.+|+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 6789999999999999999998 689996 999999862 222332222110000000001111112245567778999
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
||.+
T Consensus 203 lINa 206 (289)
T PRK12548 203 LVNA 206 (289)
T ss_pred EEEe
Confidence 9875
No 152
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.08 E-value=0.0013 Score=61.37 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=48.8
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---hCCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sD~Vvl~ 243 (244)
+|||||+|..|..+|+.| ..-|.+|.+|||++... +++.+. ............+++|+++ ++|+|+++
T Consensus 3 ~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~-~~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKT-EEFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred EEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence 799999999999999999 78899999999987652 222110 0000111223568999987 48988876
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 74 v 74 (470)
T PTZ00142 74 I 74 (470)
T ss_pred e
Confidence 3
No 153
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.08 E-value=0.0012 Score=57.32 Aligned_cols=35 Identities=31% Similarity=0.554 Sum_probs=31.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|||.|.+|..+|..+ ...|.+|..+|+++..
T Consensus 4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~ 38 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAA 38 (282)
T ss_pred cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHH
Confidence 4799999999999999998 6779999999998754
No 154
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0013 Score=58.02 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=49.3
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hhCCEEEEe
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVVCTL 243 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD~Vvl~ 243 (244)
-.+|||+|||+-||-+|+.+ ---|-.|+.+||+.-.+.++ .| +...++.++++. +++|+|.+|
T Consensus 52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~y------------g~~~ft~lhdlcerhpDvvLlc 115 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---KY------------GSAKFTLLHDLCERHPDVVLLC 115 (480)
T ss_pred ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---Hh------------cccccccHHHHHhcCCCEEEEE
Confidence 35899999999999999998 89999999999987443322 22 233556777766 468999887
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 116 t 116 (480)
T KOG2380|consen 116 T 116 (480)
T ss_pred e
Confidence 4
No 155
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.07 E-value=0.002 Score=55.35 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=40.8
Q ss_pred CEEEEEcCChHHHHHHHHHhcc--CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhhCCEEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVVCT 242 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~a--fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sD~Vvl 242 (244)
.+|||+|+|.||+.+++.+.+. -++++.++.++..+..+.+.+ . .....+++++ ..+.|+|+=
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~------------~--~~~~~~l~~ll~~~~DlVVE 68 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG------------R--VALLDGLPGLLAWRPDLVVE 68 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc------------c--CcccCCHHHHhhcCCCEEEE
Confidence 5899999999999999987332 236666654443332222110 1 2245689997 588999874
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.05 E-value=0.0025 Score=56.75 Aligned_cols=71 Identities=24% Similarity=0.323 Sum_probs=49.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.+++||+|.|.+|+.-++.+...+.. +|..|+|+... .+.+.+.+ ++. ...+....+.++++++||+|+.+
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~-~~~~~~~~----~~~---g~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPST-REKFALRA----SDY---EVPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHHHHH----Hhh---CCcEEEeCCHHHHhccCCEEEEe
Confidence 46899999999999977665444544 79999998765 23333322 111 12233457999999999999976
No 157
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.05 E-value=0.0025 Score=55.69 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=51.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+.++++.|+|.|..|+.++..| ...|+ +|..++|+... .+...+.++.. .. .......+++.+.++++|+||
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~k-a~~la~~l~~~---~~--~~~~~~~~~~~~~~~~aDiVI 197 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPAR-AAALADELNAR---FP--AARATAGSDLAAALAAADGLV 197 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHHHhh---CC--CeEEEeccchHhhhCCCCEEE
Confidence 5778999999999999999998 78998 79999998643 23333222110 00 112223356777889999998
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
.+
T Consensus 198 na 199 (284)
T PRK12549 198 HA 199 (284)
T ss_pred EC
Confidence 76
No 158
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.05 E-value=0.0015 Score=60.06 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=31.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|+|+|.+|..+|..| ..-|.+|++||+++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~ 38 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHA 38 (415)
T ss_pred cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHH
Confidence 5899999999999999998 6779999999998754
No 159
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.04 E-value=0.0012 Score=53.69 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=45.6
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHH--HHHHhh-hhhhhhcCCCC-------CccccccCCHHHHhhh
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE 236 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~ell~~ 236 (244)
+|+|+|.|.+|+.+|..+ -..|++|..||+++.... .+.... +....+..... .-......+++++. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~-a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALF-ARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHH-HHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHH-HhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 699999999999999998 577999999999986421 121111 11111111100 11223456888888 9
Q ss_pred CCEEEE
Q 026023 237 ADVVCT 242 (244)
Q Consensus 237 sD~Vvl 242 (244)
||+|+=
T Consensus 79 adlViE 84 (180)
T PF02737_consen 79 ADLVIE 84 (180)
T ss_dssp ESEEEE
T ss_pred hheehh
Confidence 999873
No 160
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.04 E-value=0.0017 Score=56.77 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=31.5
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|+|.|.+|..+|..| ..-|.+|..||+++..
T Consensus 5 ~kI~vIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~ 39 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVC-ALAGYDVLLNDVSADR 39 (292)
T ss_pred CEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 5799999999999999998 5779999999998654
No 161
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.03 E-value=0.00092 Score=49.27 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=45.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
.++|++|.|+|.|.+|.+=++.| ...|++|..+++.. ...++ .+.+. ...+++-+..+|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~---------------~i~~~-~~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG---------------LIQLI-RREFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT---------------SCEEE-ESS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh---------------HHHHH-hhhHHHHHhhheEEE
Confidence 48999999999999999999998 89999999999986 21111 11111 124456688889888
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
.++
T Consensus 66 ~at 68 (103)
T PF13241_consen 66 AAT 68 (103)
T ss_dssp E-S
T ss_pred ecC
Confidence 753
No 162
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.03 E-value=0.0023 Score=55.79 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=49.3
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhh----hhhhhcCCCC--------CccccccCCHHHH
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY----GQFLKANGEQ--------PVTWKRASSMDEV 233 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~l~el 233 (244)
++|+|+|.|.+|..+|..+ ..-|.+|..+|++.... +...+.. .......... .-......++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQT-AFHGFDVTIYDISDEAL-EKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 4899999999999999998 56799999999986531 1111100 0000000000 0112234689999
Q ss_pred hhhCCEEEEeC
Q 026023 234 LREADVVCTLC 244 (244)
Q Consensus 234 l~~sD~Vvl~~ 244 (244)
++.||+|+.++
T Consensus 82 ~~~aDlVieav 92 (287)
T PRK08293 82 VKDADLVIEAV 92 (287)
T ss_pred hcCCCEEEEec
Confidence 99999999864
No 163
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.01 E-value=0.0037 Score=52.32 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+| .|++|+.+++.| ..-|.+|..++|++.. .+.....+.......+. .... ...+..+.++++|+|++++
T Consensus 2 kI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~-~~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEK-AEEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV 76 (219)
T ss_pred EEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHH-HHHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence 699997 999999999998 6779999999987644 22211111000000000 0001 1236688899999999875
No 164
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.01 E-value=0.002 Score=53.86 Aligned_cols=62 Identities=24% Similarity=0.464 Sum_probs=42.8
Q ss_pred EEEEEcCChHHHHHHHHHhcc--CCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 167 TVGVIGAGRIGSAYARMMVEG--FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~a--fG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
+|||||+|.||+.+.+.+ +- .+.+ +..||++..... +... .++.....+++|++++.|.|+=
T Consensus 2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~~ek~~-~~~~------------~~~~~~~s~ide~~~~~DlvVE 66 (255)
T COG1712 2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRDEEKAK-ELEA------------SVGRRCVSDIDELIAEVDLVVE 66 (255)
T ss_pred eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCCHHHHH-HHHh------------hcCCCccccHHHHhhccceeee
Confidence 799999999999999997 42 3454 778888875522 1111 1112223689999999999874
No 165
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.022 Score=49.97 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=86.2
Q ss_pred HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (244)
Q Consensus 33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~ 104 (244)
.++.|++++.+..++ ..+++++.+.+.. .++++++..+ ..+++. +++..+.. |= +|.+....
T Consensus 56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KD-------VDGl~~~n 125 (295)
T PRK14174 56 CKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KD-------VDGFHPEN 125 (295)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccChhh
Confidence 345588887666554 3477777765543 4578888643 234444 34444433 32 22222111
Q ss_pred HhhCCcEEEec-CCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023 105 ANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (244)
Q Consensus 105 ~~~~gI~v~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~ 182 (244)
. |-...+. ...+.+++|.-++.++=. .+.++.||++.|+|-+. +|+-+|-
T Consensus 126 ~---g~l~~~~~~~~~~PcTp~ail~ll~~-------------------------y~i~l~Gk~vvViGrS~iVG~Pla~ 177 (295)
T PRK14174 126 L---GRLVMGHLDKCFVSCTPYGILELLGR-------------------------YNIETKGKHCVVVGRSNIVGKPMAN 177 (295)
T ss_pred H---HHHhcCCCCCCcCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence 1 1011111 123466677765443311 12469999999999987 5999999
Q ss_pred HHhcc---CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 183 MMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 183 ~la~a---fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|.+. -|++|..+.... .++.+.+++||+|+..+
T Consensus 178 lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Av 214 (295)
T PRK14174 178 LMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAI 214 (295)
T ss_pred HHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEec
Confidence 98322 478887776432 36999999999999764
No 166
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.00 E-value=0.0028 Score=50.59 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=43.3
Q ss_pred cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
.++.||++.|+|-+. +|+-++.+| ..-|+.|..++.+. .++++.+++||+
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI 82 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI 82 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence 469999999999996 999999999 89999999887642 479999999999
Q ss_pred EEEeC
Q 026023 240 VCTLC 244 (244)
Q Consensus 240 Vvl~~ 244 (244)
|+..+
T Consensus 83 VVsa~ 87 (160)
T PF02882_consen 83 VVSAV 87 (160)
T ss_dssp EEE-S
T ss_pred Eeeee
Confidence 99753
No 167
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.98 E-value=0.001 Score=58.35 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=38.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhh
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~ 211 (244)
.|+.+||+|+|-+|..-.+. ||||||+|.++|++.++. |+.++.+|
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kk-eea~~~LG 226 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKK-EEAIKSLG 226 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhH-HHHHHhcC
Confidence 89999999999999888888 799999999999997553 44444443
No 168
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.96 E-value=0.002 Score=60.29 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=35.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++.+++++|+|.|.+|+.++..| ...|++|..++|+...
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~ 367 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAH 367 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 467899999999999999999998 7999999999987643
No 169
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.96 E-value=0.003 Score=58.40 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=50.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
.+.++++.|+|.|.+|..+|+.| ...|++|.++|+...+..++..+.+ ...+ ..+...+..++.+...|+|+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~l----~~~~---~~~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEEL----GELG---IELVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHHH----HhcC---CEEEeCCcchhHhhcCCEEE
Confidence 36789999999999999999998 7999999999998643332222111 1111 12222233456778899998
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
..
T Consensus 74 ~~ 75 (450)
T PRK14106 74 VS 75 (450)
T ss_pred EC
Confidence 75
No 170
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.95 E-value=0.0022 Score=57.24 Aligned_cols=70 Identities=31% Similarity=0.364 Sum_probs=49.6
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
.++.|++|.|+|. |.||+.+++.|+...|. +++.++|+... .++....+ ......++++.++++|
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el------------~~~~i~~l~~~l~~aD 217 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL------------GGGKILSLEEALPEAD 217 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh------------ccccHHhHHHHHccCC
Confidence 4689999999998 89999999998434675 89999987543 22211111 0012347889999999
Q ss_pred EEEEe
Q 026023 239 VVCTL 243 (244)
Q Consensus 239 ~Vvl~ 243 (244)
+|+..
T Consensus 218 iVv~~ 222 (340)
T PRK14982 218 IVVWV 222 (340)
T ss_pred EEEEC
Confidence 88753
No 171
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.94 E-value=0.0026 Score=59.58 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=49.5
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl~ 243 (244)
+||+||+|..|+.+|+.| ..-|.+|.+|||++... +++.+.. ...+... .....+++|+.+. +|+|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence 699999999999999999 67899999999987652 3332210 0001111 1234688898886 9999987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 80 v 80 (493)
T PLN02350 80 V 80 (493)
T ss_pred C
Confidence 4
No 172
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.92 E-value=0.004 Score=54.85 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
-+++||+|.|..|+.-++.++..++. +|..|+|++.. .++|.+.+ ++. ....+...++.++.+++||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~-a~~f~~~~----~~~--~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDH-ARAFAERF----SKE--FGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 46999999999999988887667777 69999999755 34444333 111 123344557999999999999864
No 173
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.91 E-value=0.0039 Score=55.47 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..++++|+|.|..|+..++.|+..++. +|..|+|++.. .+++.+.+.. ...+.+...+++++.+++||+|+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~~------~~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLSS------LLGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh------hcCceEEEeCCHHHHhccCCEEEE
Confidence 346899999999999999998436885 69999998754 3444333211 001233445789999999999997
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 201 a 201 (326)
T TIGR02992 201 T 201 (326)
T ss_pred e
Confidence 5
No 174
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.91 E-value=0.0032 Score=50.14 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=36.4
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
..+|.|++|.|+|.|++|.+.++.| ...|++|..+++...+
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~ 48 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK 48 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence 3579999999999999999999998 7999999999876544
No 175
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.91 E-value=0.0031 Score=55.81 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=49.1
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
+++||+|.|..|+.-++.++..|+. +|..|+|++.. .+++.+.+ +. ..+.+...++.++.+++||+|+.+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~----~~---~~~~v~~~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARL----RD---LGVPVVAVDSAEEAVRGADIIVTA 199 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHH----HC---CCTCEEEESSHHHHHTTSSEEEE-
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhh----cc---ccccceeccchhhhcccCCEEEEc
Confidence 4899999999999999988777888 69999998754 35554433 22 245566678999999999999865
No 176
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.91 E-value=0.0032 Score=54.99 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=31.8
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|||||.|.+|..+|..+ ...|.+|+.||+++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~-a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVC-ARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHH
Confidence 3899999999999999998 4779999999999865
No 177
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.90 E-value=0.0015 Score=59.08 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=47.9
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
.++|||+|-|..|+.++..+ +.+|.+|+.+|+++........+.+ - ..++...+.+.++.+.+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~pa~~~ad~~-------~--~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDSPAAQVADEV-------I--VADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCCchhHhCceE-------E--ecCCCCHHHHHHHHhcCCEEEe
Confidence 37899999999999999994 9999999999998765322211110 0 0111122358889999999875
No 178
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.81 E-value=0.0056 Score=54.55 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..++++|+|.|.+|+..+..++...+. +|..|+|++.. .+++.+.+.+ ...+.+...+++++++++||+|+.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~~------~~g~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLRA------ELGIPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHhh------ccCceEEEeCCHHHHHccCCEEEE
Confidence 347899999999999988887334664 79999998654 3444333211 011333445789999999999987
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 204 a 204 (330)
T PRK08291 204 T 204 (330)
T ss_pred e
Confidence 5
No 179
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.79 E-value=0.0032 Score=58.76 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=46.3
Q ss_pred EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---hhCCEEEEeC
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVVCTLC 244 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sD~Vvl~~ 244 (244)
|||||+|..|+.+|+.| ..-|.+|.+|||++... +++.+.++ .+ . ......++.++. +++|+|++++
T Consensus 2 IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~~~~-----~g-~--~~~~~~s~~e~v~~l~~~dvIil~v 71 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLAEHA-----KG-K--KIVGAYSIEEFVQSLERPRKIMLMV 71 (467)
T ss_pred EEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHhhcc-----CC-C--CceecCCHHHHHhhcCCCCEEEEEC
Confidence 89999999999999999 68899999999987652 33221100 01 0 112335677766 4689988864
No 180
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.76 E-value=0.0049 Score=53.81 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=31.8
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|+|.|.+|..+|..+ ...|.+|+.+|+++..
T Consensus 4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEI 38 (291)
T ss_pred cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHH
Confidence 5899999999999999998 6789999999998754
No 181
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.76 E-value=0.0051 Score=53.62 Aligned_cols=67 Identities=30% Similarity=0.361 Sum_probs=52.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
-|.||||+|||||+-|..=|.-| +--|.+|++=-|....+++...+ ..+ ...+.+|+.++||+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~kA~~-----------dGf---~V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKKAKE-----------DGF---KVYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHHHHh-----------cCC---EeecHHHHhhcCCEEE
Confidence 48999999999999999999999 99999988877776654443211 122 2358999999999998
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
+-
T Consensus 80 ~L 81 (338)
T COG0059 80 IL 81 (338)
T ss_pred Ee
Confidence 64
No 182
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.72 E-value=0.0068 Score=53.71 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
-++++|+|.|..|+.-++.+...+.. +|..|+|++.. .+.+.+.. ++ ..+.+...++.++.++.||+|+.+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~-a~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETA-LEEYRQYA----QA---LGFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHHHHH----Hh---cCCcEEEECCHHHHhcCCCEEEEe
Confidence 46999999999999998888667776 79999999765 24433322 11 124444567999999999999865
No 183
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.72 E-value=0.0018 Score=53.64 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=34.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~ 198 (244)
..|.+++|.|+|.|.+|..+|+.| ...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~L-a~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYL-AGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHH-HHcCCCeEEEecCC
Confidence 468999999999999999999999 68998 89999987
No 184
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.71 E-value=0.0049 Score=54.90 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=34.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.|++|+|+|+|-.|-.-.+. |+++|++|++++++.++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K 202 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence 58999999999999999999 59999999999999876
No 185
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.69 E-value=0.0074 Score=54.17 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=52.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
-++++|+|.|..++.-++.+...+.. +|..|+|++.. .+.+.+.+ +. ..+.+...+++++.+++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~-a~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAA-TAKLARNL----AG---PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHH-HHHHHHHH----Hh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 36899999999999998876667777 69999999754 34444332 11 123444567999999999999875
No 186
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.69 E-value=0.0046 Score=46.80 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.5
Q ss_pred EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
+|+|+| +|.+|+++.++|++...+++...-.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~ 33 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS 33 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee
Confidence 699999 99999999999988888875554433
No 187
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.69 E-value=0.0036 Score=55.82 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcc
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~ 200 (244)
++.|+++.|||+|.+|+.+++.| ..-|. +|...+|+..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQL 209 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcc
Confidence 48899999999999999999999 78996 6999999864
No 188
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.68 E-value=0.006 Score=53.18 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=45.6
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+|.|++|..+|..| ..-|.+|..++|++.. .+.... -|.... .+..........+..++ +.+|+|++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~-~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAAL-AQAGHDVTLVARRGAH-LDALNE-NGLRLE-DGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHH-HhCCCeEEEEECChHH-HHHHHH-cCCccc-CCceeecccCCCChhHc-CCCCEEEEec
Confidence 699999999999999998 5679999999996533 122111 111000 00000111223456666 8999999874
No 189
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.67 E-value=0.0049 Score=50.38 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=43.0
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh--------hhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA 237 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (244)
++|+|+|+|.+|-.+|-.| ...|.+|+++|..++. .+..-+ ....++++.. .........+.++.+++|
T Consensus 1 M~I~ViGlGyvGl~~A~~l-A~~G~~V~g~D~~~~~-v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAAL-AEKGHQVIGVDIDEEK-VEALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHH-HHTTSEEEEE-S-HHH-HHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHH-HhCCCEEEEEeCChHH-HHHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence 4799999999999999999 6999999999998753 111000 0000011100 001123346788889999
Q ss_pred CEEEEeC
Q 026023 238 DVVCTLC 244 (244)
Q Consensus 238 D~Vvl~~ 244 (244)
|++++++
T Consensus 78 dv~~I~V 84 (185)
T PF03721_consen 78 DVVFICV 84 (185)
T ss_dssp SEEEE--
T ss_pred ceEEEec
Confidence 9999875
No 190
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.0049 Score=57.85 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=47.0
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..|++|.|+|+|.+|...++.| +..|++|.++|..+.. .+. ... .+. .........+.++.+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~-l~~-------~g~---~~~~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP-HAE-------RGV---ATVSTSDAVQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH-HHh-------CCC---EEEcCcchHhHhhcCCEEEE
Confidence 5789999999999999999998 8999999999976432 121 111 111 11111234466788999987
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 77 S 77 (488)
T PRK03369 77 S 77 (488)
T ss_pred C
Confidence 4
No 191
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.64 E-value=0.01 Score=46.34 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=46.7
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
+.++.||++.|+|-+. +|+.+|.+| ..-|++|..++++. .++++..++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 3579999999999876 689999998 78999999988542 37899999999
Q ss_pred EEEEe
Q 026023 239 VVCTL 243 (244)
Q Consensus 239 ~Vvl~ 243 (244)
+|+..
T Consensus 74 IVvsA 78 (140)
T cd05212 74 VVVVG 78 (140)
T ss_pred EEEEe
Confidence 99975
No 192
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.63 E-value=0.0027 Score=57.62 Aligned_cols=74 Identities=27% Similarity=0.348 Sum_probs=45.5
Q ss_pred EEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+|+|.|.+|+.+++.|++..+. +|...+|+.... +...+.+ ...+.....+.+....+|.++++++|+|+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~-~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKA-ERLAEKL--LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHH-HHHHT----TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHH-HHHHhhc--cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 68999999999999999766667 999999998652 2211100 00001111222223345889999999999764
No 193
>PLN02477 glutamate dehydrogenase
Probab=96.61 E-value=0.0049 Score=56.45 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
++.|++|.|.|||++|+.+|+.| ...|++|++++.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~ 238 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDI 238 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECC
Confidence 68999999999999999999998 8999999966544
No 194
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.60 E-value=0.0085 Score=51.50 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=43.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.+|+|+|+ |++|+.+++.+.+.-++++.+ +|+.+... .. . ...+.....+++++++.+|+|+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~-~~-----------~--~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL-VG-----------Q--GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-cc-----------c--CCCCccccCCHHHhccCCCEEEEC
Confidence 37999998 999999999973334788666 66654321 11 0 112233457999999999999853
No 195
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.60 E-value=0.0046 Score=54.03 Aligned_cols=74 Identities=15% Similarity=0.276 Sum_probs=45.8
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC-CCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+|.|.+|..+|..| ..-|.+|..++| +.. .+.. ...|-..... +..........+..+....+|+|++++
T Consensus 2 kI~IiG~G~iG~~~a~~L-~~~g~~V~~~~r-~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRL-LEAGRDVTFLVR-PKR-AKAL-RERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred eEEEECCCHHHHHHHHHH-HHCCCceEEEec-HHH-HHHH-HhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 699999999999999999 466999999998 322 2221 1111111100 011111112346677778999999875
No 196
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.58 E-value=0.0042 Score=56.64 Aligned_cols=72 Identities=17% Similarity=0.322 Sum_probs=46.0
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhh--------hhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
+|+|+|+|.+|..+|..+| .|.+|++||++...- +..-+. +.....+ .........+..+..+.||
T Consensus 2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~---~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQS---DKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHh---CCCcEEEecchhhhhcCCC
Confidence 6999999999999998873 499999999987541 221110 0000000 0111222234778889999
Q ss_pred EEEEeC
Q 026023 239 VVCTLC 244 (244)
Q Consensus 239 ~Vvl~~ 244 (244)
+|++++
T Consensus 76 ~vii~V 81 (388)
T PRK15057 76 YVIIAT 81 (388)
T ss_pred EEEEeC
Confidence 999875
No 197
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.56 E-value=0.0038 Score=52.36 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=33.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.++.|++|.|.|||++|+.+|+.| ...|.+|++++.+..
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCC
Confidence 358999999999999999999999 899998777655443
No 198
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.54 E-value=0.012 Score=52.66 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=44.4
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHH-hhhh-----hhhhcCC-CCCccccccCCHHHHhhhCCE
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV-TAYG-----QFLKANG-EQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~-~~~~-----~~~~~~~-~~~~~~~~~~~l~ell~~sD~ 239 (244)
+|||+|+|+||+++++.++..=++++.+...+. ++...+. ..+| ..-.... ....+..-..++++++..+|+
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~-~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK-PDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC-hHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 799999999999999987445578988876643 2212211 1111 0000000 000112223578899999999
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
|+.+
T Consensus 82 VIda 85 (341)
T PRK04207 82 VVDA 85 (341)
T ss_pred EEEC
Confidence 9875
No 199
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.52 E-value=0.0042 Score=53.24 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=32.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~ 197 (244)
.++.|+||.|-|||++|+.+|+.| ..+|++|++++.
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD 69 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSD 69 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEC
Confidence 468999999999999999999998 899999996655
No 200
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.51 E-value=0.0041 Score=49.87 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=33.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
..+...++.|+|.|+.|+..++.+ +++|++|..+|.++..
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~ 55 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPER 55 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHH
Confidence 457889999999999999999997 9999999999998653
No 201
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.50 E-value=0.011 Score=52.30 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=46.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
.+++|+|+|.|+||..+|-.| ...|. ++..+|.+.......-.| +.... ... ..... ...+. +-+++||+|+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~D-l~~~~-~~~-~~~~i-~~~~~-~~~~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMD-LSHAV-PFT-SPTKI-YAGDY-SDCKDADLVV 78 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHH-HHhhc-ccc-CCeEE-EeCCH-HHhCCCCEEE
Confidence 567999999999999999997 67888 799999875432111111 10000 000 01122 22344 5589999999
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
+.
T Consensus 79 it 80 (315)
T PRK00066 79 IT 80 (315)
T ss_pred Ee
Confidence 86
No 202
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.47 E-value=0.0052 Score=54.69 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=29.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.+|+|+|.|.+|..+|..| ..-|.+|..++|++
T Consensus 3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHH
Confidence 4699999999999999998 57799999999864
No 203
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.42 E-value=0.0073 Score=42.84 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=31.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccC-CcEEEEEcC
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL 197 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~af-G~~V~~~~~ 197 (244)
.+.+++++|+|.|.+|+.+++.| ..+ +.+|..++|
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC
Confidence 47899999999999999999998 677 678999988
No 204
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.38 E-value=0.016 Score=51.41 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=48.1
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+..++|+|+|.|.+|..+|-.+ ...| ..+..+|.........-.+.... . .............+.+ .++.||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l-~~~~~~~l~L~Di~~~~~~g~~lDl~~~-~-~~~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLI-LQKNLGDVVLYDVIKGVPQGKALDLKHF-S-TLVGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHH-HHCCCCeEEEEECCCccchhHHHHHhhh-c-cccCCCeEEEeCCCHH-HhCCCCEEE
Confidence 4567999999999999999987 5667 68999999764311111111000 0 0000011222235666 779999999
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
++
T Consensus 79 it 80 (319)
T PTZ00117 79 IT 80 (319)
T ss_pred EC
Confidence 86
No 205
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.37 E-value=0.057 Score=48.24 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=68.1
Q ss_pred HHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHH
Q 026023 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYA 181 (244)
Q Consensus 104 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA 181 (244)
.+.-.+|+|.|..+.+.-|+=-.+=.+.+. +.+ .| .+.|++|+++|=+ ++..+++
T Consensus 117 ~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~--e~~--------~g-------------~l~g~kia~vGD~~~~v~~Sl~ 173 (332)
T PRK04284 117 LAEYSGVPVWNGLTDEDHPTQVLADFLTAK--EHL--------KK-------------PYKDIKFTYVGDGRNNVANALM 173 (332)
T ss_pred HHHhCCCCEEECCCCCCChHHHHHHHHHHH--HHh--------cC-------------CcCCcEEEEecCCCcchHHHHH
Confidence 344458999998765544443333233332 110 01 3789999999975 8899999
Q ss_pred HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..+ ..||++|....|..-...++..+..-......+ ..+....++++.++.+|+|..
T Consensus 174 ~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvvy~ 230 (332)
T PRK04284 174 QGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVIYT 230 (332)
T ss_pred HHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEE
Confidence 997 799999999998642211222110000001111 123345799999999999975
No 206
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.37 E-value=0.017 Score=51.50 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=54.1
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++++|||.|..++.-.+.+..-|+. +|..|+|++... +.+...+ +.. ....+....+.++.++.||+|+-+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a~~l----~~~--~~~~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFAARL----RKR--GGEAVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHHHHH----Hhh--cCccceeccCHHHHhhcCCEEEEe
Confidence 5899999999999999998888998 699999998653 4433222 111 122345668999999999999875
No 207
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.35 E-value=0.0074 Score=54.03 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=34.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~ 199 (244)
..|.+++|.|+|.|.+|..+|+.| ...|. ++..+|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~L-a~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEAL-VRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCc
Confidence 568999999999999999999999 68998 788898864
No 208
>PRK06046 alanine dehydrogenase; Validated
Probab=96.34 E-value=0.016 Score=51.55 Aligned_cols=72 Identities=25% Similarity=0.369 Sum_probs=49.1
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
-+++||+|.|.+|+..++.++...+. +|..|+|++.. .+++.+.+.+ .....+...++++++++ +|+|+.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~-~~~~~~~~~~------~~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSS-AEKFVERMSS------VVGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHH-HHHHHHHHHh------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence 35899999999999999988546677 57778988744 3343332210 01122334568999997 9999986
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
.
T Consensus 201 T 201 (326)
T PRK06046 201 T 201 (326)
T ss_pred c
Confidence 3
No 209
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.33 E-value=0.0057 Score=53.90 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=34.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHH
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~ 204 (244)
.+++|||+|+|++|+.+|+.| ...|.+|..|+|+.....+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~~~~~ 42 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSGLSLA 42 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCCCCHH
Confidence 456899999999999999998 7999999999998754433
No 210
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.32 E-value=0.017 Score=46.00 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=50.1
Q ss_pred CCCEEEEEc--CChHHHHHHHHHhccCCcEEEEEcCCcc--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 164 ~g~tvgIvG--~G~IG~~vA~~la~afG~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
.|++|+++| .+++..+++..+ ..||+++..+.|..- +...+..+...+..... ... +...++++|.++.+|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~-g~~--i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKN-GGK--ITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHH-TTE--EEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHh-CCC--eEEEeCHHHhcCCCCE
Confidence 488999999 489999999997 899999999999872 22222221111111111 112 2334799999999999
Q ss_pred EEE
Q 026023 240 VCT 242 (244)
Q Consensus 240 Vvl 242 (244)
|..
T Consensus 77 vy~ 79 (158)
T PF00185_consen 77 VYT 79 (158)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
No 211
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.31 E-value=0.01 Score=56.05 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=31.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|||||.|..|..+|..+ ..-|..|..||+++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~l-a~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVA-AQAGHTVLLYDARAGA 42 (507)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHH
Confidence 5799999999999999998 4669999999999765
No 212
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.31 E-value=0.062 Score=47.94 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=51.3
Q ss_pred cCCCEEEEEcCC--hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 163 l~g~tvgIvG~G--~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
+.|++|+++|-+ ++...++..+ ..||++|..+.|..-...++..+..-...+..+ ..+...+++++.++.+|+|
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv 228 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADVI 228 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence 789999999997 8999999997 799999999998653322222211000011111 1233457899999999998
Q ss_pred EE
Q 026023 241 CT 242 (244)
Q Consensus 241 vl 242 (244)
..
T Consensus 229 yt 230 (331)
T PRK02102 229 YT 230 (331)
T ss_pred EE
Confidence 75
No 213
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.28 E-value=0.0095 Score=55.00 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=30.2
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+|||+|+|.+|..+|..|++ |.+|++||+++..
T Consensus 7 mkI~vIGlGyvGlpmA~~la~--~~~V~g~D~~~~~ 40 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK--SRQVVGFDVNKKR 40 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc--CCEEEEEeCCHHH
Confidence 579999999999999999843 6999999999755
No 214
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.27 E-value=0.076 Score=47.48 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHH
Q 026023 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYA 181 (244)
Q Consensus 104 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA 181 (244)
.+.-.+|+|.|..+...-|+=-.+=.+.+. +. +.+..+.|.+|+++|-+ ++..+++
T Consensus 117 ~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~--------------------~g~~~l~g~~ia~vGD~~~~v~~Sl~ 174 (336)
T PRK03515 117 LAEYAGVPVWNGLTNEFHPTQLLADLLTMQ--EH--------------------LPGKAFNEMTLAYAGDARNNMGNSLL 174 (336)
T ss_pred HHHhCCCCEEECCCCCCChHHHHHHHHHHH--HH--------------------hCCCCcCCCEEEEeCCCcCcHHHHHH
Confidence 344458999998765544443332223322 11 01124789999999976 6899999
Q ss_pred HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..+ ..||+++..+.|..-...+++.+..-...+..+ ..+...+++++.++.+|+|..
T Consensus 175 ~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDvvyt 231 (336)
T PRK03515 175 EAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADFIYT 231 (336)
T ss_pred HHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEe
Confidence 997 799999999998653211222110000011111 223455799999999999975
No 215
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.22 E-value=0.015 Score=50.64 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=49.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+.|+++.|+|.|..|+.++..| ...|+ +|..++|+... .+...+.++.. . ........+++.+.+.++|+||
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~k-a~~La~~~~~~----~-~~~~~~~~~~~~~~~~~~DiVI 195 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDK-LSRLVDLGVQV----G-VITRLEGDSGGLAIEKAAEVLV 195 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHH-HHHHHHHhhhc----C-cceeccchhhhhhcccCCCEEE
Confidence 6789999999999999999998 79998 69999998643 23333322110 0 0000111124556778899998
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
.+
T Consensus 196 na 197 (282)
T TIGR01809 196 ST 197 (282)
T ss_pred EC
Confidence 75
No 216
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.0085 Score=55.40 Aligned_cols=72 Identities=25% Similarity=0.195 Sum_probs=48.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
..+++|.|+|+|.-|..+|+.| +..|++|.++|.++.+..... .....+.+.+..-....+.+..+|+|+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~--------~~~~~~~i~~~~g~~~~~~~~~~d~vV~ 75 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAA--------QPLLLEGIEVELGSHDDEDLAEFDLVVK 75 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhh--------hhhhccCceeecCccchhccccCCEEEE
Confidence 4499999999999999999999 899999999998776510000 0000111111111122278889999987
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
.
T Consensus 76 S 76 (448)
T COG0771 76 S 76 (448)
T ss_pred C
Confidence 4
No 217
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.21 E-value=0.025 Score=50.26 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=49.1
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+..++|+|+|.|++|..+|..+ ..-|. .|..+|.++.....+..+.... . ........+....+. +-++.||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~l-a~~gl~~i~LvDi~~~~~~~~~ld~~~~-~-~~~~~~~~I~~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLI-VLKNLGDVVLFDIVKNIPQGKALDISHS-N-VIAGSNSKVIGTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HhCCCCeEEEEeCCCchhhHHHHHHHhh-h-hccCCCeEEEECCCH-HHhCCCCEEE
Confidence 4557999999999999999987 56674 8999999876422222221111 0 001111223333566 4679999999
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
++
T Consensus 80 ~t 81 (321)
T PTZ00082 80 VT 81 (321)
T ss_pred EC
Confidence 85
No 218
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.21 E-value=0.024 Score=50.86 Aligned_cols=73 Identities=18% Similarity=0.347 Sum_probs=47.3
Q ss_pred EEEEEcCChHHHHHHHHHhc-c------CCcEEEEEcCCc---chHHHHHHhhhhhhhhcCCCCCc-------cccccCC
Q 026023 167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPV-------TWKRASS 229 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~-a------fG~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 229 (244)
+|+|+|.|+-|.++|..|+. . |+-+|..|.|.. .+...+..+.- +.+...+ ......+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~-----~~n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTT-----HENVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhc-----CCCccccCCCcCCCCeEEECC
Confidence 48999999999999999854 2 558999998843 22222222110 1111111 1223468
Q ss_pred HHHHhhhCCEEEEeC
Q 026023 230 MDEVLREADVVCTLC 244 (244)
Q Consensus 230 l~ell~~sD~Vvl~~ 244 (244)
++++++.||+|++.+
T Consensus 76 l~eal~~ADiIIlAV 90 (342)
T TIGR03376 76 LVEAAKGADILVFVI 90 (342)
T ss_pred HHHHHhcCCEEEEEC
Confidence 999999999999874
No 219
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.21 E-value=0.08 Score=47.31 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=68.9
Q ss_pred HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHH
Q 026023 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY 180 (244)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~v 180 (244)
..+.-.+|+|.|..+.+.-|+=-.+=.+.+. +. +.+..+.|.+|+++|-+ ++...+
T Consensus 116 ~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~--------------------~g~~~l~gl~va~vGD~~~~v~~S~ 173 (334)
T PRK12562 116 TLAEYAGVPVWNGLTNEFHPTQLLADLLTMQ--EH--------------------LPGKAFNEMTLVYAGDARNNMGNSM 173 (334)
T ss_pred HHHHhCCCCEEECCCCCCChHHHHHHHHHHH--HH--------------------hCCCCcCCcEEEEECCCCCCHHHHH
Confidence 3344458999998775544443332223322 11 01123789999999976 789999
Q ss_pred HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 181 A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
+..+ ..||++|..+.|..-...+++.+......+..+ ..+...+++++.++.+|+|..
T Consensus 174 ~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvyt 231 (334)
T PRK12562 174 LEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADFIYT 231 (334)
T ss_pred HHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEE
Confidence 9997 789999999998652211222211000111111 123345799999999999975
No 220
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.011 Score=54.55 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=33.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+.|+++.|+|.|.+|..+|+.| ...|++|.++|+..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCC
Confidence 6789999999999999999998 89999999999765
No 221
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.19 E-value=0.046 Score=49.60 Aligned_cols=37 Identities=30% Similarity=0.250 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~ 198 (244)
..+.+++|.|+|.|.+|..+++.| ...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~L-a~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYL-AAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence 458999999999999999999999 69999 79999986
No 222
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.18 E-value=0.0079 Score=55.53 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=33.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~ 197 (244)
.+|.|+||.|.|+|++|+..|+.| ..+|++|++++.
T Consensus 224 ~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD 259 (444)
T PRK14031 224 TDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSD 259 (444)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEC
Confidence 369999999999999999999998 899999999666
No 223
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.18 E-value=0.019 Score=49.56 Aligned_cols=38 Identities=26% Similarity=0.178 Sum_probs=33.7
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
..+++++|+|.|.+|+.++..| ...|.+|..++|+...
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~ 152 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSK 152 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 4678999999999999999998 6789999999998643
No 224
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.17 E-value=0.12 Score=46.60 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=49.1
Q ss_pred ccCCCEEEEEcCC--------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023 162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (244)
Q Consensus 162 ~l~g~tvgIvG~G--------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (244)
.+.|++|+|+|.| ++.++++..+ ..|||+|....|..-...++..+.--+..+.. ...+...+++++.
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~---g~~~~~~~d~~ea 242 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAEN---GGKFNIVNSMDEA 242 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence 3789999999853 4557788887 78999999999874321122111000001111 1223345799999
Q ss_pred hhhCCEEEE
Q 026023 234 LREADVVCT 242 (244)
Q Consensus 234 l~~sD~Vvl 242 (244)
++.+|+|..
T Consensus 243 ~~~aDvvyt 251 (357)
T TIGR03316 243 FKDADIVYP 251 (357)
T ss_pred hCCCCEEEE
Confidence 999999975
No 225
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.16 E-value=0.015 Score=54.80 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=31.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|||||.|..|..+|..+ ..-|.+|..||+++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~l-a~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVA-ASAGHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHH
Confidence 5799999999999999998 5779999999999764
No 226
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.14 E-value=0.013 Score=53.27 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=51.4
Q ss_pred CEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++|.|+|.|.||+.+|..| ..-| .+|+.-||+.... .+..+..+ .+.....+.+...+.+.+++++.|+|+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~l-a~~~d~~V~iAdRs~~~~-~~i~~~~~---~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKL-AQNGDGEVTIADRSKEKC-ARIAELIG---GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHH-HhCCCceEEEEeCCHHHH-HHHHhhcc---ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 5799999999999999998 5777 8999999997552 22111100 01222334444556799999999999875
No 227
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.12 E-value=0.016 Score=50.06 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=39.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccC-CcEEEEEc-CCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.+|||+|+|+||+.+++.+ ... ++++.++- +..... .....+ . .+...+.+++++-.+.|+|+.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l-~~~~~~~l~~v~~~~~~~~--~~~~~~-------~---~~~~~~~d~~~l~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELL-EHDPDLRVDWVIVPEHSID--AVRRAL-------G---EAVRVVSSVDALPQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHH-hhCCCceEEEEEEcCCCHH--HHhhhh-------c---cCCeeeCCHHHhccCCCEEEEC
Confidence 3799999999999999998 554 56654443 322211 100000 0 0123346788885568999876
No 228
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.11 E-value=0.056 Score=47.67 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=68.7
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~ 183 (244)
+...+++|.|..+.+.-|+=-.+=.+.+. +. -| .+.|++|+++|= +++.+.++..
T Consensus 116 a~~~~vPVINag~~~~HPtQaL~Dl~Ti~--e~---------~g-------------~l~gl~i~~vGd~~~v~~Sl~~~ 171 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPCQILADLLTIY--EH---------RG-------------SLKGLKVAWVGDGNNVANSLLLA 171 (304)
T ss_pred HHhCCCCEEeCCCCCCChHHHHHHHHHHH--HH---------hC-------------CcCCcEEEEEeCCCccHHHHHHH
Confidence 44568999999876554443333333332 11 01 278899999998 7899999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
+ ..||++|....|..-...++..+.+ ....+ ..+...+++++.++.+|+|..
T Consensus 172 l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvvy~ 223 (304)
T PRK00779 172 A-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVVYT 223 (304)
T ss_pred H-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEEEe
Confidence 7 7999999999986532212221110 01111 123345799999999999875
No 229
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.02 Score=53.88 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=33.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+.+++++|+|+|.+|..+|+.| +..|.+|.++|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCC
Confidence 5688999999999999999998 89999999999765
No 230
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.014 Score=54.54 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=33.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+.|++++|+|+|.-|+.+|+.| +..|++|.++|....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNA 42 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCc
Confidence 4689999999999999999998 899999999996543
No 231
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.016 Score=54.25 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=35.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
..+.+++|.|+|+|.+|+.+|+.| ...|++|.++|+...
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~ 49 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNET 49 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChH
Confidence 457889999999999999999998 899999999998654
No 232
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.07 E-value=0.0092 Score=55.21 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=32.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~ 197 (244)
.++.|+||.|.|||++|+.+|+.| ..+|++|++++.
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsD 263 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSD 263 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEc
Confidence 358999999999999999999998 899999999843
No 233
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.05 E-value=0.0096 Score=52.53 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=30.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+|+|+|.|.||..+|.+| ...|.+|..+.|+..
T Consensus 6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~ 39 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDY 39 (313)
T ss_pred cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCH
Confidence 5799999999999999999 678999999999753
No 234
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.05 E-value=0.015 Score=47.97 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=33.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~ 199 (244)
..|.+++|.|+|.|.+|.++++.| -..|. ++..+|...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~L-a~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNL-VLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHH-HHcCCCEEEEEECCc
Confidence 568999999999999999999999 69999 588888764
No 235
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.04 E-value=0.015 Score=54.29 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=47.9
Q ss_pred CEEEEEcCChHHHHHHHHHhc-cCCcEEEEEcCCcchHHHHHH-------h-hhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFV-------T-AYGQFLKANGEQPVTWKRASSMDEVLRE 236 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~-afG~~V~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (244)
.+|+|+|+|.+|..+|-.||+ +.|.+|+++|..+.. .+..- + ....+..+.... ......+..+.+++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~-v~~l~~g~~~~~e~gl~ell~~~~~~--~l~~t~~~~~~i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR-IDAWNSDQLPIYEPGLDEVVKQCRGK--NLFFSTDVEKHVAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH-HHHHHcCCCccCCCCHHHHHHHhhcC--CEEEEcCHHHHHhc
Confidence 479999999999999999853 357999999987654 11100 0 000001110000 12233567888999
Q ss_pred CCEEEEeC
Q 026023 237 ADVVCTLC 244 (244)
Q Consensus 237 sD~Vvl~~ 244 (244)
||++++|+
T Consensus 79 advi~I~V 86 (473)
T PLN02353 79 ADIVFVSV 86 (473)
T ss_pred CCEEEEEe
Confidence 99999985
No 236
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.04 E-value=0.099 Score=46.12 Aligned_cols=110 Identities=20% Similarity=0.157 Sum_probs=68.1
Q ss_pred HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHH
Q 026023 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM 183 (244)
Q Consensus 105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~ 183 (244)
++..+++|.|..+.+.-|+=-.+=.+.+. +.+ | .+.|.+|+++|= +++.++++..
T Consensus 112 a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~--e~~---------g-------------~l~g~~v~~vGd~~~v~~Sl~~~ 167 (304)
T TIGR00658 112 AKYASVPVINGLTDLFHPCQALADLLTII--EHF---------G-------------KLKGVKVVYVGDGNNVCNSLMLA 167 (304)
T ss_pred HHhCCCCEEECCCCCCChHHHHHHHHHHH--HHh---------C-------------CCCCcEEEEEeCCCchHHHHHHH
Confidence 44457999999776554443333333332 110 1 278999999997 7899999999
Q ss_pred HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
+ ..||++|....|..-...++..+..-...... ...+...+++++.++.+|+|..
T Consensus 168 l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~~a~~~aDvvy~ 222 (304)
T TIGR00658 168 G-AKLGMDVVVATPEGYEPDADIVKKAQEIAKEN---GGSVELTHDPVEAVKGADVIYT 222 (304)
T ss_pred H-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCEEEE
Confidence 7 79999999999865322122111000000111 1123345799999999999975
No 237
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=96.04 E-value=0.12 Score=46.19 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=48.0
Q ss_pred c-CCCEEEEEcCC-------hHHHHHHHHHhccCCcEEEEEcC-CcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023 163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (244)
Q Consensus 163 l-~g~tvgIvG~G-------~IG~~vA~~la~afG~~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (244)
+ .|++|+|+|.| ++...++..+ ..||++|....| ..-...++..+.--+..+..+ ..+...++++|.
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea 241 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA 241 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 5 78999887644 7888999987 789999999998 322111111110000011111 223345799999
Q ss_pred hhhCCEEEE
Q 026023 234 LREADVVCT 242 (244)
Q Consensus 234 l~~sD~Vvl 242 (244)
++.+|+|..
T Consensus 242 ~~~aDvvy~ 250 (335)
T PRK04523 242 YAGADVVYA 250 (335)
T ss_pred hCCCCEEEe
Confidence 999999975
No 238
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.03 E-value=0.032 Score=49.02 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=44.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++|+|+|.|.+|..+|..+ ...|. +|..+|+..........+..... . ............+.+ -++.||+|+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~l-a~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~-~~~~~~~i~~~~d~~-~~~~aDiVii~ 77 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLL-ALKELGDVVLFDIVEGVPQGKALDIAEAA-P-VEGFDTKITGTNDYE-DIAGSDVVVIT 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCeEEEEEECCCchhHHHHHHHHhhh-h-hcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence 4899999999999999997 45443 99999996643211111111000 0 001111222234564 57999999986
No 239
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.03 E-value=0.11 Score=46.54 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=67.8
Q ss_pred HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHH
Q 026023 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY 180 (244)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~v 180 (244)
..+...+|+|.|..+.+.-|+=-.+=.+.+. .. .+..+.|++|+++|=+ +...++
T Consensus 117 ~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~--e~---------------------~g~~l~gl~ia~vGD~~~~v~~Sl 173 (334)
T PRK01713 117 ELAEYAGVPVFNGLTDEFHPTQMLADVLTMI--EN---------------------CDKPLSEISYVYIGDARNNMGNSL 173 (334)
T ss_pred HHHHhCCCCEEECCCCCCChHHHHHHHHHHH--HH---------------------cCCCcCCcEEEEECCCccCHHHHH
Confidence 3344568999999775544432222222222 11 0113789999999986 678888
Q ss_pred HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 181 A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
+..+ ..||++|..+.|..-...++..+...+..+.. ...+...+++++.++.+|+|..
T Consensus 174 ~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~---g~~~~~~~d~~~a~~~aDvVyt 231 (334)
T PRK01713 174 LLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKES---GARITVTDDIDKAVKGVDFVHT 231 (334)
T ss_pred HHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCEEEE
Confidence 9997 78999999999864321121111000001111 1223445899999999999975
No 240
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.02 E-value=0.029 Score=47.29 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=49.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcE---EEEEcCCc---chHH---HHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN---LIYYDLYQ---ATRL---EKFVTAYGQFLKANGEQPVTWKRASSMD 231 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~---V~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (244)
.++.++++.|+|.|..|+.+|+.| ...|++ |..+||+. .... .+....+ .+...... . . .+|.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~l---a~~~~~~~--~-~-~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEI---AKETNPEK--T-G-GTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHH---HHHhccCc--c-c-CCHH
Confidence 358889999999999999999998 788985 99999983 1111 0110111 11111111 1 1 2688
Q ss_pred HHhhhCCEEEEe
Q 026023 232 EVLREADVVCTL 243 (244)
Q Consensus 232 ell~~sD~Vvl~ 243 (244)
+.++++|+|+-.
T Consensus 93 ~~l~~~dvlIga 104 (226)
T cd05311 93 EALKGADVFIGV 104 (226)
T ss_pred HHHhcCCEEEeC
Confidence 888999998864
No 241
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.99 E-value=0.11 Score=45.79 Aligned_cols=72 Identities=22% Similarity=0.358 Sum_probs=52.0
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
+.|++|.++|-| ++..+++..+ ..||++|....|..-..+++..+. +... ...+...+++++.++.+|+
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~~a~~~aDv 219 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAK---GIKVRETESLEEVIDEADV 219 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHc---CCEEEEECCHHHHhCCCCE
Confidence 789999999995 9999999997 799999999998754222222221 1111 1233345799999999999
Q ss_pred EEE
Q 026023 240 VCT 242 (244)
Q Consensus 240 Vvl 242 (244)
|..
T Consensus 220 vyt 222 (301)
T TIGR00670 220 LYV 222 (301)
T ss_pred EEE
Confidence 864
No 242
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.99 E-value=0.021 Score=53.07 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=34.2
Q ss_pred cCCCEEEEEcCChHHHH-HHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~-vA~~la~afG~~V~~~~~~~~~ 201 (244)
..++++.|+|+|.+|.. +|+.| +..|.+|.++|....+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~ 43 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESA 43 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCCh
Confidence 56789999999999999 79998 8999999999987654
No 243
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.98 E-value=0.03 Score=49.63 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=46.0
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC-CC-CCccccccCCHHHHh-hhCCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL-READVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~ell-~~sD~Vvl~ 243 (244)
+|+|+|.|++|..+|..| ..-|.+|..++|+... .+. ...-+.-.... +. .........++.+.+ ..+|+|+++
T Consensus 2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~-~~~-i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTT-FES-INTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHH-HHH-HHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 599999999999999998 6779999999997532 111 11000000000 00 011122335777776 589999987
Q ss_pred C
Q 026023 244 C 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 79 v 79 (326)
T PRK14620 79 V 79 (326)
T ss_pred e
Confidence 4
No 244
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.96 E-value=0.029 Score=50.98 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=51.7
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCC-c-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFK-M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG-~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
-+++||+|.|..|+.-++.++..+. . +|.+|+|++.. .+.|.+.+.+.. + ...++...++.++.+++||+|+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~-a~~f~~~~~~~~---~-~~~~v~~~~s~~eav~~ADIVvt 229 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKS-LDSFATWVAETY---P-QITNVEVVDSIEEVVRGSDIVTY 229 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHHHhc---C-CCceEEEeCCHHHHHcCCCEEEE
Confidence 4689999999999999998754564 4 89999999854 344444332110 0 00123445799999999999986
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 230 a 230 (379)
T PRK06199 230 C 230 (379)
T ss_pred c
Confidence 5
No 245
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.91 E-value=0.012 Score=52.74 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=45.4
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
||||+|-|..|+.+++.+ +.+|.+|+.+|+++......+.+.+ - .......+.+.++.+.||+|+.
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~p~~~~ad~~-------~--~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANSPAVQVADHV-------V--LAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCCChhHhCcee-------E--eCCCCCHHHHHHHHhhCCEEEe
Confidence 599999999999999995 9999999999998754322211110 0 0011112237888899998864
No 246
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.87 E-value=0.034 Score=45.75 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=48.3
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc----cCCHHHHh
Q 026023 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR----ASSMDEVL 234 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ell 234 (244)
+.++.||++.|+|-+. +|+-+|.+| ..-|+.|..++.+.-.. + .+.......... ..++.+.+
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~----~-------~~~~~~~hs~t~~~~~~~~l~~~~ 124 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV----F-------TRGESIRHEKHHVTDEEAMTLDCL 124 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc----c-------ccccccccccccccchhhHHHHHh
Confidence 5689999999999998 599999999 78899999996432110 0 000000000000 01388999
Q ss_pred hhCCEEEEeC
Q 026023 235 READVVCTLC 244 (244)
Q Consensus 235 ~~sD~Vvl~~ 244 (244)
++||+|+..+
T Consensus 125 ~~ADIVIsAv 134 (197)
T cd01079 125 SQSDVVITGV 134 (197)
T ss_pred hhCCEEEEcc
Confidence 9999999864
No 247
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.85 E-value=0.12 Score=47.72 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=51.2
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (244)
Q Consensus 162 ~l~g~tvgIvG~G---~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s 237 (244)
.+.|++|+++|-+ +...+++..+ ..| ||+|..+.|..-...+++.+. +... ...+...++++|.++.+
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCC
Confidence 3789999999994 8899999987 565 999999998654222232211 1111 12234457999999999
Q ss_pred CEEEE
Q 026023 238 DVVCT 242 (244)
Q Consensus 238 D~Vvl 242 (244)
|+|..
T Consensus 310 DVVYt 314 (429)
T PRK11891 310 DVVYA 314 (429)
T ss_pred CEEEE
Confidence 99975
No 248
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.81 E-value=0.026 Score=52.73 Aligned_cols=40 Identities=23% Similarity=0.114 Sum_probs=35.4
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+..+.+++|.|+|.|.+|.++|+.| +..|.+|.+++++..
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDD 50 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCch
Confidence 3457899999999999999999998 799999999997653
No 249
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.80 E-value=0.019 Score=54.98 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=50.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
....+++|||+|-|..|+.+++.+ +.+|.+|+.+|+.+......+.+.+ - ..+....+.+.++.+++|+|
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~~-------~--v~~~~D~~~l~~~a~~~dvI 87 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAARH-------V--VGSFDDRAAVREFAKRCDVL 87 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCcee-------e--eCCCCCHHHHHHHHHHCCEE
Confidence 357899999999999999999995 9999999999998754222211100 0 00111122366778889998
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+..
T Consensus 88 t~e 90 (577)
T PLN02948 88 TVE 90 (577)
T ss_pred EEe
Confidence 753
No 250
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.80 E-value=0.016 Score=45.89 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=28.3
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+|||-|||+||+.++|.+...-.++|.+++...
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 799999999999999998667778888887654
No 251
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.013 Score=49.40 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=46.9
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sD~Vvl~ 243 (244)
+++.|+|.|+.|..+|+.| ...|..|..+++.+....+..-+.++. ... .......+.|.++ +.++|+++..
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~----~~v-~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDT----HVV-IGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcce----EEE-EecCCCHHHHHhcCCCcCCEEEEe
Confidence 4789999999999999999 899999999999876532211100100 000 0111223456666 7788888764
No 252
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.77 E-value=0.036 Score=49.63 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=45.5
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCC-CC--CccccccCCHHHHhhhCCEEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQ--PVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~ell~~sD~Vvl 242 (244)
.+|+|+|.|.+|..+|..| ..-| .|..|.+++.. .+. ....+.-..... .. ........++.+.++.+|+|++
T Consensus 8 mkI~IiGaGa~G~alA~~L-a~~g-~v~l~~~~~~~-~~~-i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVil 83 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASIC-ARRG-PTLQWVRSAET-ADD-INDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVM 83 (341)
T ss_pred CeEEEECCCHHHHHHHHHH-HHCC-CEEEEeCCHHH-HHH-HHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEE
Confidence 4799999999999999998 5667 67777766533 111 111000000000 00 0112234688899999999998
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 84 av 85 (341)
T PRK12439 84 GV 85 (341)
T ss_pred Ee
Confidence 74
No 253
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.76 E-value=0.017 Score=46.15 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=46.4
Q ss_pred EEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCCEEEEeC
Q 026023 168 VGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 168 vgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|.|+| .|.+|+.+++.| ..-|.+|.++.|++.+..+ . .+.. ...+...+++.+.++.+|.|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~---------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--S---------PGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--C---------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--c---------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 57899 599999999998 8999999999999875322 0 0111 112223345788899999998753
No 254
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.73 E-value=0.048 Score=48.08 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=46.4
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
++|+|+|.|.+|..+|-.+ ...|. +|..+|........+..+.+... .............++++ +++||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~l-a~~g~~~VvlvDi~~~l~~g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRL-AEKELADLVLLDVVEGIPQGKALDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHH-HHcCCCeEEEEeCCCChhHHHHHhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 4799999999999999997 46554 89999996543221111111100 00001112223467777 79999999863
No 255
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.72 E-value=0.018 Score=52.89 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.++|.|+|+|.+|..+|+.| +..|.+|.++|+++.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 36899999999999999998 899999999998764
No 256
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.64 E-value=0.055 Score=45.53 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=38.5
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHH
Q 026023 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205 (244)
Q Consensus 160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~ 205 (244)
...+.|++|.|||.|.+|.+=++.| ..+|++|..++|...++..+
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~ 64 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLD 64 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHH
Confidence 3567899999999999999988887 78999999999988765444
No 257
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.62 E-value=0.021 Score=51.17 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~ 198 (244)
..|..++|.|+|.|.+|..+|+.| ...|. ++..+|+.
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~L-a~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEML-VRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence 468999999999999999999999 58899 89999985
No 258
>PRK11579 putative oxidoreductase; Provisional
Probab=95.61 E-value=0.052 Score=48.51 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=41.2
Q ss_pred CEEEEEcCChHHHH-HHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023 166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC 241 (244)
Q Consensus 166 ~tvgIvG~G~IG~~-vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv 241 (244)
-++||||+|.||+. .+..+.+.-++++.+ +|+++... .+ .| .....+.+++++|+ +.|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~---~~-----------~~~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-KA---DW-----------PTVTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-Hh---hC-----------CCCceeCCHHHHhcCCCCCEEE
Confidence 38999999999985 566553444788775 55554321 11 11 01223579999996 469999
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 70 I~t 72 (346)
T PRK11579 70 IPT 72 (346)
T ss_pred EcC
Confidence 864
No 259
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.58 E-value=0.032 Score=50.52 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=51.5
Q ss_pred cCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 026023 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (244)
Q Consensus 163 l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (244)
|.|||+||+|+- .-...++++| +..|++|.+|||-..+.... . .. ......++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~---~---------~~--~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR---N---------FP--DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh---c---------CC--CceEeCCHHH
Confidence 899999999984 4567899999 89999999999976542111 1 01 2345689999
Q ss_pred HhhhCCEEEEe
Q 026023 233 VLREADVVCTL 243 (244)
Q Consensus 233 ll~~sD~Vvl~ 243 (244)
+++.||.+++.
T Consensus 373 ~~~~aDaivi~ 383 (414)
T COG1004 373 ALKGADAIVIN 383 (414)
T ss_pred HHhhCCEEEEe
Confidence 99999999985
No 260
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.034 Score=51.70 Aligned_cols=38 Identities=34% Similarity=0.363 Sum_probs=34.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.|++|.|+|+|.+|..+|+.| +..|.+|.++|....
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~ 43 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPA 43 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChh
Confidence 36789999999999999999998 899999999997644
No 261
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.56 E-value=0.05 Score=47.91 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=44.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++|+|+|.|.+|+.+|..| ...|. +|..+|+..... +.....+........ ..... ...+. +.++.||+|+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~i-~~~~~-~~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVKI-KAGDY-SDCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeEE-EcCCH-HHhCCCCEEEEc
Confidence 4799999999999999998 67784 799999976542 211111100000000 01111 22344 457999999986
No 262
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.53 E-value=0.05 Score=47.01 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=42.5
Q ss_pred EEEEEc-CChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 167 tvgIvG-~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
+|+|+| +|++|+.+++.+...=++++.+ +|+...+...... +.. .+....++..+.+++++...+|+|+.+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~---~~~---~~~~~~gv~~~~d~~~l~~~~DvVIdf 75 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDA---GEL---AGIGKVGVPVTDDLEAVETDPDVLIDF 75 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCH---HHh---cCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence 799999 7999999999974456888666 5533221100000 000 011112233447899986678999864
No 263
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.03 Score=49.49 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=30.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccC--CcEEEEEcCCcchHHHH
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEK 205 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~af--G~~V~~~~~~~~~~~~~ 205 (244)
-+|||=|||+||+.++|.+ ..- .|+|.+++....++...
T Consensus 2 ikV~INGfGrIGR~v~ra~-~~~~~dieVVaInd~t~~~~~A 42 (335)
T COG0057 2 IKVAINGFGRIGRLVARAA-LERDGDIEVVAINDLTDPDYLA 42 (335)
T ss_pred cEEEEecCcHHHHHHHHHH-HhCCCCeEEEEEecCCCHHHHH
Confidence 3799999999999999997 554 49999999854443333
No 264
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.51 E-value=0.071 Score=48.23 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=48.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhcc------CCcEEEEEcCCcch---HHHHHHhhhhhhhhcCCCCCc-------cccccC
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPV-------TWKRAS 228 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~a------fG~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 228 (244)
..+|+|+|.|+-|.++|..|+.. ||-+|..|.|...- ...+..+. .+.+..++ .+....
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~-----~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT-----KHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh-----cCCCcccCCCCcCCCceEEec
Confidence 35899999999999999998533 45799999887631 11111111 01111111 222346
Q ss_pred CHHHHhhhCCEEEEeC
Q 026023 229 SMDEVLREADVVCTLC 244 (244)
Q Consensus 229 ~l~ell~~sD~Vvl~~ 244 (244)
++.+.++.||+|++.+
T Consensus 86 dl~eav~~aDiIvlAV 101 (365)
T PTZ00345 86 DLKEAVEDADLLIFVI 101 (365)
T ss_pred CHHHHHhcCCEEEEEc
Confidence 8999999999999864
No 265
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.48 E-value=0.037 Score=50.91 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=51.0
Q ss_pred ccccCCCEEEEEcC----------ChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccC
Q 026023 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (244)
Q Consensus 160 ~~~l~g~tvgIvG~----------G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (244)
+.++.|++|+|+|+ ..-+..+++.| ...| ++|.+|||........+ . ......
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~~--------------~-~~~~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKKL--------------D-GLVTLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhhc--------------c-CceeeC
Confidence 34688999999998 56788999999 7886 99999999854311100 0 011236
Q ss_pred CHHHHhhhCCEEEEeC
Q 026023 229 SMDEVLREADVVCTLC 244 (244)
Q Consensus 229 ~l~ell~~sD~Vvl~~ 244 (244)
+++|.++.||.|+++.
T Consensus 379 ~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 379 SLDEALATADVLVMLV 394 (415)
T ss_pred CHHHHHhCCCEEEECC
Confidence 8999999999999863
No 266
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.47 E-value=0.019 Score=44.72 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=44.4
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
+|+|+|. |++|+.+|-.| ..-+ -++..+|+..........| +....... .....-..+..+.+++||+|++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l-~~~~l~~ei~L~D~~~~~~~g~a~D-l~~~~~~~---~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLL-AQQGLADEIVLIDINEDKAEGEALD-LSHASAPL---PSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp EEEEESTTSHHHHHHHHHH-HHTTTSSEEEEEESSHHHHHHHHHH-HHHHHHGS---TEEEEEEESSGGGGTTESEEEET
T ss_pred EEEEECCCChHHHHHHHHH-HhCCCCCceEEeccCcccceeeehh-hhhhhhhc---ccccccccccccccccccEEEEe
Confidence 7999999 99999998876 3434 4799999985432111111 00000000 01112223678889999999985
No 267
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.46 E-value=0.077 Score=44.26 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=38.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHH
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~ 204 (244)
-++.|++|.|+|-|.+|.+=++.| ...|++|+.+++...++..
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~ 50 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELK 50 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHH
Confidence 469999999999999999999999 8999999999998844433
No 268
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.061 Score=49.75 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++++.|+|.|.+|..+|+.| ...|.+|.++|.....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKP 40 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCc
Confidence 5689999999999999999998 8999999999987653
No 269
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.43 E-value=0.02 Score=52.90 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=45.5
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC--ccccccCCHHHH-hhhCCEEEEe
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEV-LREADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~el-l~~sD~Vvl~ 243 (244)
++.|+|+|++|+.+++.| ...|.+|.++++++... +...+.. +... ........++++ +.++|.|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 689999999999999998 88999999999987542 2211100 0000 011122346666 7889988875
No 270
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.42 E-value=0.048 Score=50.02 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=50.9
Q ss_pred ccCCCEEEEEcC----------ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (244)
Q Consensus 162 ~l~g~tvgIvG~----------G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (244)
++.|++|+|+|+ ..-...+++.| ...|++|.+|||...+.... . . ....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~------------~--~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G------------L--PLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h------------c--ccCCCHH
Confidence 479999999998 45788999999 89999999999986542111 0 0 1246899
Q ss_pred HHhhhCCEEEEeC
Q 026023 232 EVLREADVVCTLC 244 (244)
Q Consensus 232 ell~~sD~Vvl~~ 244 (244)
+.++.||.|+++.
T Consensus 372 ~~~~~ad~~v~~t 384 (411)
T TIGR03026 372 EALKGADALVILT 384 (411)
T ss_pred HHHhCCCEEEEec
Confidence 9999999999873
No 271
>PLN02527 aspartate carbamoyltransferase
Probab=95.36 E-value=0.27 Score=43.39 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=49.6
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 163 LKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 163 l~g~tvgIvG~G---~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
+.|.+|+++|-+ +...+++..+ ..| |++|....|..-...+++.+. +... ...+...+++++.++.+|
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~~a~~~aD 220 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTSK---GVEWEESSDLMEVASKCD 220 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHHc---CCEEEEEcCHHHHhCCCC
Confidence 789999999975 6889999987 566 999999998653212222211 1111 122334579999999999
Q ss_pred EEEE
Q 026023 239 VVCT 242 (244)
Q Consensus 239 ~Vvl 242 (244)
+|..
T Consensus 221 vvyt 224 (306)
T PLN02527 221 VLYQ 224 (306)
T ss_pred EEEE
Confidence 9875
No 272
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.35 E-value=0.017 Score=45.00 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=44.2
Q ss_pred EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCC-CCCcccc-ccCCHHHHhhhCCEEEEeC
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVVCTLC 244 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~sD~Vvl~~ 244 (244)
|.|+|.|.||..+|-+| +.-|.+|..++|+.+. +. ....|-...... ....... ...+..+-....|+|++++
T Consensus 1 I~I~G~GaiG~~~a~~L-~~~g~~V~l~~r~~~~--~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARL-AQAGHDVTLVSRSPRL--EA-IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHHHHHHH-HHTTCEEEEEESHHHH--HH-HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred CEEECcCHHHHHHHHHH-HHCCCceEEEEccccH--Hh-hhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
Confidence 68999999999999999 6799999999998722 22 111111111111 1111111 1112246788899999875
No 273
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.35 E-value=0.053 Score=45.46 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=32.6
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+.|+++.|.|. |.||+.+++.| ..-|.+|++++|+..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~ 41 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA 41 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence 67899999996 89999999998 688999999988754
No 274
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.35 E-value=0.026 Score=52.18 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=34.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEE--------EcCCc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~--------~~~~~ 199 (244)
.++.|+||.|=|+|++|+..|+.| ..+|++|++ |++..
T Consensus 224 ~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~G 269 (445)
T PRK14030 224 IDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDG 269 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCC
Confidence 358999999999999999999998 899999999 77654
No 275
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.052 Score=50.24 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+-+++|+|+|.+|..+|+.| +..|.+|.++|....
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQ 40 (448)
T ss_pred CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCC
Confidence 45899999999999999998 899999999998653
No 276
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.33 E-value=0.049 Score=45.89 Aligned_cols=38 Identities=32% Similarity=0.313 Sum_probs=33.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~ 199 (244)
..|.+++|.|+|.|.+|.++|+.| ...|. ++..+|...
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~L-a~~Gvg~i~lvD~D~ 55 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYL-AAAGVGKLGLVDDDV 55 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCE
Confidence 468999999999999999999999 68899 688887654
No 277
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.32 E-value=0.069 Score=46.86 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=42.8
Q ss_pred EEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
|+|+|.|.+|..+|..+ ...|. +|..+|..+........+... ... ............+.+ -++.||+|+++
T Consensus 1 I~IIGaG~vG~~ia~~l-a~~~l~eV~L~Di~e~~~~g~~~dl~~-~~~-~~~~~~~I~~t~d~~-~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLL-ALKELGDVVLLDIVEGLPQGKALDISQ-AAP-ILGSDTKVTGTNDYE-DIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHH-HhCCCcEEEEEeCCCcHHHHHHHHHHH-hhh-hcCCCeEEEEcCCHH-HhCCCCEEEEe
Confidence 68999999999999987 44444 999999986431111111110 000 011112233334555 48999999985
No 278
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.31 E-value=0.29 Score=43.84 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=51.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.+.|++|+++|= .++...++..+ ..||++|..+.|..-...+++.+..-...... ...+...+++++.++.+|+|
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~eav~~aDvv 226 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVS---GGSVLVTDDVDEAVKDADFV 226 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhc---CCeEEEEcCHHHHhCCCCEE
Confidence 488999999997 68888989997 79999999999874321122211100000001 11233457999999999999
Q ss_pred EE
Q 026023 241 CT 242 (244)
Q Consensus 241 vl 242 (244)
..
T Consensus 227 y~ 228 (338)
T PRK02255 227 YT 228 (338)
T ss_pred EE
Confidence 75
No 279
>PRK08818 prephenate dehydrogenase; Provisional
Probab=95.26 E-value=0.03 Score=50.69 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=30.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
...||+|||+ |.||+.+|+.|.+.+|.+|+++|+..
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d 39 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD 39 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 4569999999 99999999999324699999999853
No 280
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.25 E-value=0.056 Score=45.10 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=32.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~ 198 (244)
..|.+++|+|+|.|.+|..+|+.| ...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~L-a~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVAL-ARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence 468999999999999999999999 57898 48888887
No 281
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.23 E-value=0.055 Score=50.38 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.|++|+|+|+|.-|+++++.| +. |++|..+|...
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~ 38 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLK 38 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCC
Confidence 578999999999999999999 65 99999999654
No 282
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.062 Score=45.40 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=33.5
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.| .|.||+.+|+.| ...|++|+..+|+...
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~~ 44 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTDD 44 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcch
Confidence 47899999997 568999999999 6899999999987543
No 283
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.17 E-value=0.097 Score=46.35 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=44.2
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhhCCEEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~sD~Vvl 242 (244)
.+|+|+|.|+||..+|-.| ...|. ++..+|...........|.- ....... ..+....+.++ ++.||+|++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l-~~~~~~~el~LiD~~~~~~~g~a~Dl~----~~~~~~~~~~v~~~~dy~~-~~~adivvi 77 (312)
T cd05293 4 NKVTVVGVGQVGMACAISI-LAKGLADELVLVDVVEDKLKGEAMDLQ----HGSAFLKNPKIEADKDYSV-TANSKVVIV 77 (312)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCccHHHHHHHHHH----HhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence 4899999999999999876 45555 79999987643211111110 0000000 12222345655 899999998
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 78 t 78 (312)
T cd05293 78 T 78 (312)
T ss_pred C
Confidence 5
No 284
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.17 E-value=0.094 Score=46.52 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=50.2
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCc-------cccccCCHHHHhhhCC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-------TWKRASSMDEVLREAD 238 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~ell~~sD 238 (244)
++|.|+|.|+-|.++|..| .--|-+|..|.|.+... ++ ... .+.+..++ ......||.+.++.||
T Consensus 2 ~kI~ViGaGswGTALA~~l-a~ng~~V~lw~r~~~~~-~~-i~~-----~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVL-ARNGHEVRLWGRDEEIV-AE-INE-----TRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred ceEEEEcCChHHHHHHHHH-HhcCCeeEEEecCHHHH-HH-HHh-----cCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 4799999999999999998 57778999999986431 11 110 01122222 2334568999999999
Q ss_pred EEEEeC
Q 026023 239 VVCTLC 244 (244)
Q Consensus 239 ~Vvl~~ 244 (244)
+|++.+
T Consensus 74 ~iv~av 79 (329)
T COG0240 74 IIVIAV 79 (329)
T ss_pred EEEEEC
Confidence 999853
No 285
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.057 Score=46.07 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=35.0
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++.++++.|.|. |.||+.+++.| ...|++|+..+|+...
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~~ 45 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQEK 45 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 4588999999988 89999999998 6899999999988643
No 286
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.05 E-value=0.099 Score=46.18 Aligned_cols=66 Identities=26% Similarity=0.439 Sum_probs=44.3
Q ss_pred CEEEEEcCChHHHH-HHHHHhccCC--cEE-EEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC--CE
Q 026023 166 QTVGVIGAGRIGSA-YARMMVEGFK--MNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DV 239 (244)
Q Consensus 166 ~tvgIvG~G~IG~~-vA~~la~afG--~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--D~ 239 (244)
.++||||+|.|++. .+..+ +..+ +.+ -.+|+++.. .+.+.+.|| .. ..+.+++++|+.- |+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~----------~~-~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG----------IA-KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC----------CC-cccCCHHHHhcCCCCCE
Confidence 48999999988864 77776 6766 454 445776643 344444442 11 2457999999975 89
Q ss_pred EEEeC
Q 026023 240 VCTLC 244 (244)
Q Consensus 240 Vvl~~ 244 (244)
|+++.
T Consensus 71 V~Iat 75 (342)
T COG0673 71 VYIAT 75 (342)
T ss_pred EEEcC
Confidence 98863
No 287
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.05 E-value=0.029 Score=51.42 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=28.5
Q ss_pred CEEEEEcCChHHHHHHHHHhcc-CCcEEEEEc-CCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYD-LYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~a-fG~~V~~~~-~~~~~ 201 (244)
.+|||.|||+||+.++|.+ .. ++++|.+.+ +....
T Consensus 86 ~kvgInGFGRIGR~v~R~~-~~~~~i~vvaINdp~~~~ 122 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIA-TSRDDIEVVAVNDPFIDA 122 (421)
T ss_pred eEEEEECcCHHHHHHHHHH-hhcCCcEEEEecCCCCCH
Confidence 4899999999999999995 64 899999855 45443
No 288
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.04 E-value=0.077 Score=45.59 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=46.7
Q ss_pred EEEEcC-ChHHHHHHHHHhccCC----cEEEEEcCCcchH--HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 168 vgIvG~-G~IG~~vA~~la~afG----~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
|+|+|. |.+|..+|..| ..-| -+|..+|...... .+...+.+ .... ....+....++++.+++||+|
T Consensus 1 I~IIGagG~vG~~ia~~l-~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~---~~~~--~~~~i~~~~d~~~~~~~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGL-ADGSVLLAIELVLYDIDEEKLKGVAMDLQDA---VEPL--ADIKVSITDDPYEAFKDADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHH-HhCCCCcceEEEEEeCCcccchHHHHHHHHh---hhhc--cCcEEEECCchHHHhCCCCEE
Confidence 589999 99999999987 4656 6899999876431 11111111 1111 122344456789999999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+++
T Consensus 75 v~t 77 (263)
T cd00650 75 IIT 77 (263)
T ss_pred EEC
Confidence 984
No 289
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.02 E-value=0.097 Score=46.18 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=44.5
Q ss_pred EEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
+|+|+|.|.+|..+|..| ...| -+|..+|++......+..+.... . ... .... ....+. +-++.||+|++++
T Consensus 2 kI~IIGaG~VG~~~a~~l-~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-~-~~~-~~~~-i~~~d~-~~l~~aDiViita 75 (308)
T cd05292 2 KVAIVGAGFVGSTTAYAL-LLRGLASEIVLVDINKAKAEGEAMDLAHG-T-PFV-KPVR-IYAGDY-ADCKGADVVVITA 75 (308)
T ss_pred EEEEECCCHHHHHHHHHH-HHcCCCCEEEEEECCchhhhhHHHHHHcc-c-ccc-CCeE-EeeCCH-HHhCCCCEEEEcc
Confidence 699999999999999997 6778 58999999764321111111000 0 000 0111 122455 5589999999864
No 290
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.02 E-value=0.067 Score=45.11 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~ 46 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAK 46 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 478999999985 99999999998 5789999999998643
No 291
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.01 E-value=0.091 Score=45.97 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcc
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~ 200 (244)
++.|+++.|+|.|..+++++-.| ...|+ +|..++|+..
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l-~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDE 159 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCcc
Confidence 46889999999999999999987 57787 7999999853
No 292
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.072 Score=46.66 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=51.9
Q ss_pred cCCCEEEEEc---CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 163 l~g~tvgIvG---~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
+.|++|+|+| +|+...+.++.| +.||++|..++|..-..++...+.+ ......+...+..+|.++++|+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l-------~~~~~~~~~~~~~e~~i~~~DV 227 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL-------EEKGGVVVEHDSDEEVIEEADV 227 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH-------hhcCceEEEecchhhhhccCCE
Confidence 8999999999 899999999999 8999999999997433222222211 1111223445566669999999
Q ss_pred EEE
Q 026023 240 VCT 242 (244)
Q Consensus 240 Vvl 242 (244)
+-+
T Consensus 228 l~~ 230 (316)
T COG0540 228 LYM 230 (316)
T ss_pred EEe
Confidence 864
No 293
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.91 E-value=0.067 Score=49.36 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=45.5
Q ss_pred EEEEEcCChHHHHHHH---HH--hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 167 TVGVIGAGRIGSAYAR---MM--VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~---~l--a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+|+|+|.|.+|...+- .+ ...-|.+|..+|+.+... +............ ......+....++++.++.||+|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l-~~~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~Vi 79 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERL-ETVEILAKKIVEE-LGAPLKIEATTDRREALDGADFVI 79 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHH-HHHHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEEE
Confidence 6999999999998544 21 123356899999987431 1111111111111 111233444678999999999999
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
.+
T Consensus 80 ~a 81 (423)
T cd05297 80 NT 81 (423)
T ss_pred Ee
Confidence 86
No 294
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.89 E-value=0.066 Score=44.76 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=33.7
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+.|+++.|.|. |.||+.+++.| ...|++|+.++|+..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 67999999998 99999999998 688999999999864
No 295
>PLN02214 cinnamoyl-CoA reductase
Probab=94.89 E-value=0.096 Score=46.65 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=49.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.+.+++|.|.|. |.||+.+++.| ..-|.+|.+..|+..............................+++++++.+|+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 467899999997 99999999998 6889999999987543111111100000000000011222345678889999987
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+-+
T Consensus 86 ih~ 88 (342)
T PLN02214 86 FHT 88 (342)
T ss_pred EEe
Confidence 643
No 296
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.89 E-value=0.054 Score=45.92 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.3
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++|+||+|+.|..+.++| .--|-.|.+||+++..
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~a 35 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTA 35 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHH
Confidence 3689999999999999998 8999999999999865
No 297
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.079 Score=44.01 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=32.7
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++++.|.|. |.||+.+++.| ..-|.+|+.++|++..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l-~~~g~~V~~~~r~~~~ 42 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEAL-LAEGYKVAITARDQKE 42 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEeeCCHHH
Confidence 56789999985 99999999998 5679999999998643
No 298
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.87 E-value=0.067 Score=44.68 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=47.1
Q ss_pred EEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 168 vgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
|.|+|. |++|+.+++.| ..-|.+|.+..|.+.+...+.+..-|.+.- ...+...++|.+.|+.+|.|+++
T Consensus 1 I~V~GatG~~G~~v~~~L-~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv-----~~d~~~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRAL-LSAGFSVRALVRDPSSDRAQQLQALGAEVV-----EADYDDPESLVAALKGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTGCEEEEESSSHHHHHHHHHHTTTEEE-----ES-TT-HHHHHHHHTTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHH-HhCCCCcEEEEeccchhhhhhhhcccceEe-----ecccCCHHHHHHHHcCCceEEee
Confidence 578885 99999999999 679999999999885433322221111110 11222345788899999999876
No 299
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.87 E-value=0.052 Score=55.19 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=46.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcE-------------EEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccC
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRAS 228 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~-------------V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 228 (244)
..++|+|+|.|.||+.+|+.|++--+.+ |...|++... .+...+.+ .+.. .+.+...+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~-a~~la~~~------~~~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD-AKETVEGI------ENAEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH-HHHHHHhc------CCCceEEeecCCHH
Confidence 5789999999999999999996544444 8888988754 22222211 0111 11122223
Q ss_pred CHHHHhhhCCEEEEeC
Q 026023 229 SMDEVLREADVVCTLC 244 (244)
Q Consensus 229 ~l~ell~~sD~Vvl~~ 244 (244)
+|.++++++|+|++++
T Consensus 641 ~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 641 SLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHhhcCCCEEEECC
Confidence 4555557899999864
No 300
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.86 E-value=0.66 Score=42.42 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=49.8
Q ss_pred ccCCCEEEEEcC-----C---hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023 162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (244)
Q Consensus 162 ~l~g~tvgIvG~-----G---~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (244)
.+.|++|+|+|- | +...+++..+ ..||++|..+.|..-...++..+.--+..+..+ ..+....++++.
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea 259 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA 259 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 378999999985 5 5668999997 799999999999742111111110000011111 223345799999
Q ss_pred hhhCCEEEE
Q 026023 234 LREADVVCT 242 (244)
Q Consensus 234 l~~sD~Vvl 242 (244)
++.+|+|..
T Consensus 260 v~~aDvVYt 268 (395)
T PRK07200 260 FKDADIVYP 268 (395)
T ss_pred hCCCCEEEE
Confidence 999999975
No 301
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.85 E-value=0.068 Score=42.02 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=41.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
-.|++|++||+ +. .++++| +.-+.++..+++++..... .... ......++++++||+|++
T Consensus 9 ~~~~~V~~VG~--f~-P~~~~l-~~~~~~v~v~d~~~~~~~~---------------~~~~-~~~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 9 GPGDKVGMVGY--FQ-PLVEKL-KERGAEVRVFDLNPDNIGE---------------EPGD-VPDEDAEEILPWADVVII 68 (147)
T ss_dssp TTTSEEEEES----H-CCHHHH-CCCCSEEEEEESSGGG--S---------------SCT--EEGGGHHHHGGG-SEEEE
T ss_pred cCCCEEEEEcC--cH-HHHHHH-hcCCCCEEEEECCCCCCCC---------------CCCc-CCHHHHHHHHccCCEEEE
Confidence 57899999996 21 267777 7899999999999854211 0111 133578999999999987
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
.
T Consensus 69 T 69 (147)
T PF04016_consen 69 T 69 (147)
T ss_dssp E
T ss_pred E
Confidence 5
No 302
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.82 E-value=0.12 Score=44.10 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=31.1
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
-++-|+|.|++++.+++++ +.+|++|..+|+++.
T Consensus 101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCcc
Confidence 3799999999999999995 999999999998754
No 303
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=94.79 E-value=0.092 Score=43.96 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~ 40 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEP 40 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchH
Confidence 378999999997 78999999999 678999999998753
No 304
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.78 E-value=0.083 Score=44.10 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=33.5
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.++++.|.| .|.||+.+++.| ..-|++|+.++|+..
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~ 41 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 46789999999 699999999998 678999999999864
No 305
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.068 Score=44.98 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 478999999986 78999999999 6789999999998654
No 306
>PLN02602 lactate dehydrogenase
Probab=94.76 E-value=0.17 Score=45.57 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=44.2
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++|+|+|.|+||..+|-.| ...|. ++..+|...........|-... . .... ...+....+. +-+++||+|+++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l-~~~~l~~el~LiDi~~~~~~g~a~DL~~~-~-~~~~-~~~i~~~~dy-~~~~daDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTI-LTQDLADELALVDVNPDKLRGEMLDLQHA-A-AFLP-RTKILASTDY-AVTAGSDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCCCchhhHHHHHHHhh-h-hcCC-CCEEEeCCCH-HHhCCCCEEEEC
Confidence 6999999999999999987 55555 7999998764321111121000 0 0000 1122212344 449999999986
No 307
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.75 E-value=0.049 Score=50.40 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=33.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.++.|+||.|=|+|++|+..|++| ..+|++|++++.+.
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~ 270 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSD 270 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCC
Confidence 468999999999999999999998 89999999555443
No 308
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.74 E-value=0.1 Score=49.64 Aligned_cols=39 Identities=26% Similarity=0.228 Sum_probs=35.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.++.++++.|+|.|.+|+.++..| ...|++|..++|+..
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e 413 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYE 413 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence 357899999999999999999998 789999999999754
No 309
>PLN00106 malate dehydrogenase
Probab=94.74 E-value=0.1 Score=46.44 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=46.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCC-Ccc-ccccCCHHHHhhhC
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVT-WKRASSMDEVLREA 237 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~ell~~s 237 (244)
...++|+|+|. |+||..+|-.| ...+. ++..+|..+.. .+ ..|- ...... .+. +...+++.+.++.|
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l-~~~~~~~el~L~Di~~~~-g~-a~Dl-----~~~~~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLM-KMNPLVSELHLYDIANTP-GV-AADV-----SHINTPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH-HhCCCCCEEEEEecCCCC-ee-Echh-----hhCCcCceEEEEeCCCCHHHHcCCC
Confidence 34569999999 99999999997 53343 89999987621 10 0010 000000 111 11235678999999
Q ss_pred CEEEEe
Q 026023 238 DVVCTL 243 (244)
Q Consensus 238 D~Vvl~ 243 (244)
|+|+++
T Consensus 88 DiVVit 93 (323)
T PLN00106 88 DLVIIP 93 (323)
T ss_pred CEEEEe
Confidence 999985
No 310
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.73 E-value=0.087 Score=44.34 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=34.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|. |.||+.+++.| ...|++|+..+|+...
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l-~~~G~~Vi~~~r~~~~ 45 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVL-AQAGAKVVLASRRVER 45 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 478999999996 99999999998 6889999999998643
No 311
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.62 E-value=0.13 Score=47.97 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=50.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.+|.|++|.|||-|.++.+=++.| ..+|++|..+++...++..+... ...+.+..-.-.++.++.+|+|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~----------~~~i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD----------AGMLTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh----------CCCEEEEeCCCChHHhCCCEEE
Confidence 579999999999999999988887 78999999999987665443221 0111111111234567888887
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 77 ~~a 79 (457)
T PRK10637 77 IAA 79 (457)
T ss_pred EEC
Confidence 765
No 312
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.58 E-value=0.057 Score=49.15 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++.|+||.|=|+|+.|+..|+.| ...|++|+++|-+..
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g 241 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKG 241 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCC
Confidence 48999999999999999999998 788999999998865
No 313
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.55 E-value=0.051 Score=46.40 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=31.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEE
Q 026023 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (244)
Q Consensus 162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~ 195 (244)
++.|+++.|-|+|++|+.+|+.| ...|++|+++
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~v 61 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAV 61 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEE
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEE
Confidence 58999999999999999999999 7999999887
No 314
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.54 E-value=0.14 Score=39.52 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=27.7
Q ss_pred EEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~ 198 (244)
+|.|+|.|.+|.++++.| ...|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L-~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNL-ARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCEEEEEcCC
Confidence 589999999999999999 69998 68888865
No 315
>PRK08589 short chain dehydrogenase; Validated
Probab=94.51 E-value=0.094 Score=44.91 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=32.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
.+.||++.|.|. |.||+++|+.| ..-|++|+..+|+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l-~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIAL-AQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCc
Confidence 368999999997 78999999999 6789999999998
No 316
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.51 E-value=0.11 Score=46.31 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=26.5
Q ss_pred EEEEEcCChHHHHHHHHHhccC----CcEEEEEcCCcch
Q 026023 167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQAT 201 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~af----G~~V~~~~~~~~~ 201 (244)
+|||.|||+||+.+.|.+ ... +.+|...+.....
T Consensus 1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~ 38 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQ 38 (325)
T ss_pred CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCH
Confidence 489999999999999986 544 3788887764444
No 317
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.14 Score=47.27 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=33.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+.++++.|+|+|.+|...++.| +..|.+|.++|....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRIT 40 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCC
Confidence 5688999999999999999998 899999999998654
No 318
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.48 E-value=0.094 Score=43.83 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.++++.|.|. |.||+.+++.| ...|++|+.++|++..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 367899999985 89999999998 6789999999998744
No 319
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.46 E-value=0.091 Score=48.36 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=30.5
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.|+|+|.+|..+|+.| +..|.+|.++|....+
T Consensus 1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~ 34 (433)
T TIGR01087 1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNE 34 (433)
T ss_pred CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCc
Confidence 378999999999999998 8999999999987553
No 320
>PLN02342 ornithine carbamoyltransferase
Probab=94.44 E-value=0.56 Score=42.17 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=50.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+.|++|+++|= .++...++..+ ..||++|..+.|..-...++..+. ....+. ..+...+++++.++.+|+|.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVvy 264 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVVY 264 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEEE
Confidence 78999999987 46888889987 799999999998653322222211 111111 12334579999999999997
Q ss_pred E
Q 026023 242 T 242 (244)
Q Consensus 242 l 242 (244)
.
T Consensus 265 ~ 265 (348)
T PLN02342 265 T 265 (348)
T ss_pred E
Confidence 5
No 321
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.11 Score=45.12 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=35.2
Q ss_pred ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+..+.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+..
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~L-a~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQF-ARRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence 45688999999996 99999999998 578999999999864
No 322
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.41 E-value=0.081 Score=36.67 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=31.1
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.|+|.|.||-++|..| ..+|.+|..+.+++..
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccchh
Confidence 588999999999999998 8999999999998754
No 323
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.39 E-value=0.09 Score=50.19 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=33.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
-.|+++.|.|. |.||+.+++.| ...|++|.+++|+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 47889999996 99999999998 6889999999998644
No 324
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.1 Score=43.87 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=33.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++++.|.|. |.||+.+|+.| ..-|++|+..+|++..
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l-~~~G~~V~~~~r~~~~ 41 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRA-ARAGADVVLAARTAER 41 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 67899999985 89999999998 6899999999998643
No 325
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.37 E-value=0.08 Score=39.06 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
-+..+++.| +..|++|.+|||............ ..++...+++++.++.+|+|++++
T Consensus 18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~D~vvl~t 74 (106)
T PF03720_consen 18 PALELIEEL-KERGAEVSVYDPYVDEEEIKELGK-----------LEGVEVCDDLEEALKGADAVVLAT 74 (106)
T ss_dssp HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHHCH-----------HHCEEEESSHHHHHTTESEEEESS
T ss_pred HHHHHHHHH-HHCCCEEEEECCccChHHHHhhCC-----------ccceEEecCHHHHhcCCCEEEEEe
Confidence 567899998 899999999999987643321000 012334578999999999999874
No 326
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.36 E-value=0.12 Score=43.90 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=33.6
Q ss_pred cccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.++.||++.|.|.+ .||+++|+.| ..-|++|+..+|+.+
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~l-a~~G~~v~l~~r~~~ 47 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAF-RALGAELAVTYLNDK 47 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEEeCChh
Confidence 45789999999986 6999999999 578999999888753
No 327
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=94.35 E-value=0.8 Score=38.58 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=31.6
Q ss_pred eEEEEeCCCCch-HHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEe
Q 026023 16 YRVVSTKPMPGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG 68 (244)
Q Consensus 16 ~~ilv~~~~~~~-~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 68 (244)
|+|++|.+.+.. ...+.|++.|.++...+.-+.....++..+.+.+.+|.++.
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iif 54 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAV 54 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEE
Confidence 689999987653 34567888898887665433222223333344433676554
No 328
>PRK12937 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.15 Score=42.46 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=31.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+.++++.|.|. |.||+.+|+.| ..-|++|+...++..
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~~ 40 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGSA 40 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCCH
Confidence 67899999985 99999999999 688999888776543
No 329
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.31 E-value=0.11 Score=47.17 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023 139 VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (244)
Q Consensus 139 ~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~ 198 (244)
.+|.++++-..|.. .....|.+++|.|+|.|.+|..+++.| ...|. ++..+|..
T Consensus 20 ~ry~Rqi~l~~~g~-----~~q~~l~~~~VliiG~GglG~~v~~~L-a~~Gvg~i~ivD~D 74 (370)
T PRK05600 20 RRTARQLALPGFGI-----EQQERLHNARVLVIGAGGLGCPAMQSL-ASAGVGTITLIDDD 74 (370)
T ss_pred HHhhcccchhhhCH-----HHHHHhcCCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEeCC
Confidence 34555544444421 123568999999999999999999999 68998 78888876
No 330
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.30 E-value=0.7 Score=40.90 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=50.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch-HH-HHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-RL-EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
.+.|++|+++|- +++...++..+ ..||++|....|..-. .. ++..+. ....+ .+...+++++.++.+|
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~----~~~~g----~i~~~~d~~~av~~aD 220 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVER----AKKKG----TLSWEMNLHKAVSHAD 220 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHHH----HHhcC----CeEEEeCHHHHhCCCC
Confidence 378999999997 78999999997 7899999999996532 11 111110 11111 1223478999999999
Q ss_pred EEEE
Q 026023 239 VVCT 242 (244)
Q Consensus 239 ~Vvl 242 (244)
+|..
T Consensus 221 vvy~ 224 (311)
T PRK14804 221 YVYT 224 (311)
T ss_pred EEEe
Confidence 9975
No 331
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.13 Score=43.41 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.||++.|.|. |.||+++++.| ..-|++|+..+|+...
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~ 45 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAY-VEAGAQVAIAARHLDA 45 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 478999999997 78999999999 6889999999987643
No 332
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.26 E-value=0.2 Score=44.60 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=45.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhcc--CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCcccccc---CCHHHHhh
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR 235 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~a--fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~ 235 (244)
.++.++|+|+|. |+||..+|-.| .. +.-++..+|............ .... ...+... .+..+.++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l-~~~~~~~elvL~Di~~~~g~a~Dl~-------~~~~-~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLL-KQNPHVSELSLYDIVGAPGVAADLS-------HIDT-PAKVTGYADGELWEKALR 75 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHH-hcCCCCCEEEEEecCCCcccccchh-------hcCc-CceEEEecCCCchHHHhC
Confidence 367779999999 99999999987 53 445899999832111010000 0011 1112211 23378999
Q ss_pred hCCEEEEeC
Q 026023 236 EADVVCTLC 244 (244)
Q Consensus 236 ~sD~Vvl~~ 244 (244)
.||+|+++.
T Consensus 76 gaDvVVita 84 (321)
T PTZ00325 76 GADLVLICA 84 (321)
T ss_pred CCCEEEECC
Confidence 999999863
No 333
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.25 E-value=0.087 Score=46.38 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.7
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.+++|+|.|.||..+|-+| ..-|..|..++|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEech
Confidence 4799999999999999999 56799999999974
No 334
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.24 E-value=0.11 Score=43.09 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=33.6
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.|+++.|.|. |.||+.+++.| ..-|++|++.+|+...
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~ 41 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENK 41 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 67899999987 77999999998 7889999999998643
No 335
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.22 E-value=0.079 Score=48.04 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=31.8
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++||+|+|-||--+|-.+ ..-|.+|+|||-+.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~f-A~~G~~ViG~DIn~~~ 44 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAF-ASAGFKVIGVDINQKK 44 (436)
T ss_pred eEEEEEccccccHHHHHHH-HHcCCceEeEeCCHHH
Confidence 7999999999999999998 5889999999988654
No 336
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.21 E-value=0.3 Score=42.97 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=40.9
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----hCC
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD 238 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sD 238 (244)
..++||||.|+||+..+..+.+.-++++.+ +++.+........+.+ + ++ ..+++.+++++ +.|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~-------G---i~-~~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL-------G---VA-TSAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc-------C---CC-cccCCHHHHHhCcCCCCCC
Confidence 358999999999999766663444677664 4454432111111111 1 11 12468999995 478
Q ss_pred EEEEe
Q 026023 239 VVCTL 243 (244)
Q Consensus 239 ~Vvl~ 243 (244)
+|+.+
T Consensus 73 iVf~A 77 (302)
T PRK08300 73 IVFDA 77 (302)
T ss_pred EEEEC
Confidence 78875
No 337
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.21 E-value=0.2 Score=45.02 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=44.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccC--CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~af--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
.+|||+|. .+|+.-++.+ +.. +.++.++-....+..+++.+.|| +..+.+++|++++.|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al-~~~~~~~eLvaV~d~~~erA~~~A~~~g------------i~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAF-AAAPERFELAGILAQGSERSRALAHRLG------------VPLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHH-HhCCCCcEEEEEEcCCHHHHHHHHHHhC------------CCccCCHHHHhcCCCEEEEE
Confidence 58999999 6899999887 555 57877644443344455444442 22357999999988988876
No 338
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.11 Score=43.88 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=33.9
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.|+++.|.| .|.||+.+|+.| ..-|++|+..+|++..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~ 43 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPD 43 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhh
Confidence 58899999998 578999999999 6889999999987643
No 339
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.19 E-value=0.67 Score=40.92 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=48.6
Q ss_pred cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
+.|++|+++|= +++..+++..+ ..||++|....|..-.. ++ . ......+++++.++.+|+
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~~-~--------------~~~~~~~d~~ea~~~aDv 216 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-EG-M--------------PEYGVHTDLDEVIEDADV 216 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-cc-c--------------cceEEECCHHHHhCCCCE
Confidence 78999999987 59999999997 79999999999865321 11 0 012345799999999999
Q ss_pred EEE
Q 026023 240 VCT 242 (244)
Q Consensus 240 Vvl 242 (244)
|..
T Consensus 217 vyt 219 (305)
T PRK00856 217 VMM 219 (305)
T ss_pred EEE
Confidence 865
No 340
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=94.16 E-value=0.18 Score=42.11 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=30.4
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
.+.++++.|.| .|.||+.+|++| ...|++|+...++
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l-~~~g~~v~~~~~~ 39 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVAL-AQEGAKVVINYNS 39 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEcCC
Confidence 36789999998 789999999998 6899999876544
No 341
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.14 E-value=0.23 Score=43.41 Aligned_cols=76 Identities=25% Similarity=0.294 Sum_probs=47.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+.|+++.|+|.|-.|++++--| ...|+ +|..++|+... .++..+.+.. ..+..........++++.+..+|+|+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~k-a~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~divI 199 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSR-AQALADVINN---AVGREAVVGVDARGIEDVIAAADGVV 199 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHH-HHHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEEE
Confidence 5688999999999999999998 67998 69999998643 2332222110 00100011111113355678899988
Q ss_pred Ee
Q 026023 242 TL 243 (244)
Q Consensus 242 l~ 243 (244)
.+
T Consensus 200 Na 201 (283)
T PRK14027 200 NA 201 (283)
T ss_pred Ec
Confidence 64
No 342
>PRK05086 malate dehydrogenase; Provisional
Probab=94.11 E-value=0.14 Score=45.24 Aligned_cols=72 Identities=29% Similarity=0.272 Sum_probs=44.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHh--ccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCcccc--ccCCHHHHhhhCCEE
Q 026023 166 QTVGVIGA-GRIGSAYARMMV--EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVLREADVV 240 (244)
Q Consensus 166 ~tvgIvG~-G~IG~~vA~~la--~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~sD~V 240 (244)
++++|+|. |.||+.++..|+ ..++..+..+++.+...... .+ + .... ...... ..+++.+.++.+|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~a-lD-l----~~~~-~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVA-VD-L----SHIP-TAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCccee-hh-h----hcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence 47999999 999999997652 34556889999874321000 01 0 0000 001111 135778889999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
+++.
T Consensus 74 Iita 77 (312)
T PRK05086 74 LISA 77 (312)
T ss_pred EEcC
Confidence 9864
No 343
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.13 Score=44.30 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.3
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++.||++.|.| .|.||+.+|+.| ..-|++|+..+++..
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~L-a~~G~~Vv~~~r~~~ 41 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEF-ARRGARVVLGDVDKP 41 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 47899999997 778999999999 688999999998764
No 344
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.04 E-value=0.19 Score=41.45 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=32.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~ 198 (244)
..|.+.+|.|+|.|.+|.++++.| -..|.+ +..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L-~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNL-VLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEECC
Confidence 458999999999999999999999 688994 8888765
No 345
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.03 E-value=0.059 Score=41.81 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.4
Q ss_pred EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+-|+|.|.+|+.+++.+ +.+|++|..+|+++.
T Consensus 1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHH-HHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCcc
Confidence 46999999999999995 999999999999864
No 346
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.98 E-value=0.18 Score=44.52 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=42.5
Q ss_pred EEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCC----CccccccCCHHHHhhhCCEE
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~sD~V 240 (244)
+|+|+|.|+||..+|-.| -.-|. ++..+|........+-.|- ...... .... +. +-.+-++.||+|
T Consensus 1 Ki~IIGaG~VG~~~a~~l-~~~~~~~elvL~Di~~~~a~g~a~DL-----~~~~~~~~~~~~~i-~~-~~y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYA-LALGLFSEIVLIDVNEGVAEGEALDF-----HHATALTYSTNTKI-RA-GDYDDCADADII 72 (307)
T ss_pred CEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchhhHHHHHH-----HhhhccCCCCCEEE-EE-CCHHHhCCCCEE
Confidence 589999999999998876 34454 7999998754321111111 000110 1111 12 336899999999
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+++
T Consensus 73 vit 75 (307)
T cd05290 73 VIT 75 (307)
T ss_pred EEC
Confidence 986
No 347
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.084 Score=44.60 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=34.4
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
..+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~r~~~~ 45 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARL-LEAGARVVTTARSRPD 45 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHH-HHCCCEEEEEeCChhh
Confidence 3578999999995 89999999999 6789999999987543
No 348
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=93.97 E-value=0.16 Score=43.00 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=33.0
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++.||++.|.|. |.||+++|+.| ..-|++|+...++..+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~~~~ 44 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEF-AQSGVNIAFTYNSNVE 44 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHH
Confidence 3588999999987 77999999999 6899999888665433
No 349
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=93.93 E-value=0.13 Score=47.32 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=49.7
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
.++.||++.|.|. |.||+++++.| ..-|++|+..+|+.....+. ....+ .............+++.+.+.+.|+
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~-~~~~~---~~v~~v~~Dvsd~~~v~~~l~~IDi 248 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLE-INGED---LPVKTLHWQVGQEAALAELLEKVDI 248 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH-HhhcC---CCeEEEEeeCCCHHHHHHHhCCCCE
Confidence 4678999999987 89999999998 67899999999875432111 10000 0000001122223346677888999
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
++.+
T Consensus 249 LInn 252 (406)
T PRK07424 249 LIIN 252 (406)
T ss_pred EEEC
Confidence 8865
No 350
>PRK06701 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.18 Score=43.82 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.8
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
..+.|+++.|.|. |.||..+++.| ..-|++|+.++++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l-~~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLF-AKEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 4688999999985 78999999999 578999999988754
No 351
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.19 Score=41.98 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.++++.|.|. |.||+.+|+.| ..-|++|+.++|++.
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l-~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEAL-AEAGATVAFNDGLAA 42 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence 367899999985 89999999998 688999999988754
No 352
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.89 E-value=0.15 Score=43.09 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=34.0
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.|+++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l-~~~G~~v~~~~r~~~~ 43 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRL-AAEGATVVVGDIDPEA 43 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 78999999998 99999999999 6889999999987543
No 353
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.16 Score=47.07 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=31.1
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+|.|+|.|..|...|+.| ...|.+|.++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCch
Confidence 589999999999999998 8999999999987654
No 354
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.85 E-value=0.13 Score=41.91 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=45.2
Q ss_pred EEEEEcCChHHHHHHHHH-hccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEEE
Q 026023 167 TVGVIGAGRIGSAYARMM-VEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVCT 242 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~l-a~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vvl 242 (244)
.+-|||.|++|++++..= .+-.||+ +-+||-.+.. .|+ ....+++...++|++.+++ .|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~--------VG~-----~~~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK--------VGT-----KIGDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH--------hCc-----ccCCeeeechHHHHHHHHhcCccEEEE
Confidence 689999999999998751 2456887 5567776543 232 2234677788899999994 556666
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 153 tV 154 (211)
T COG2344 153 TV 154 (211)
T ss_pred Ec
Confidence 53
No 355
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.80 E-value=0.14 Score=43.57 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=48.6
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
..+.|+++.|.|. |.||+++|+.| ..-|++|+..+|+..+..+...+ ..............++++.+...|+
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l-~~~G~~Vi~~~r~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~iDi 82 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAF-RAKGAKVIGLTHSKINNSESNDE------SPNEWIKWECGKEESLDKQLASLDV 82 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEECCchhhhhhhcc------CCCeEEEeeCCCHHHHHHhcCCCCE
Confidence 4588999999987 67999999998 68999999999876322111000 0000001122222345667778898
Q ss_pred EEEe
Q 026023 240 VCTL 243 (244)
Q Consensus 240 Vvl~ 243 (244)
++.+
T Consensus 83 lVnn 86 (245)
T PRK12367 83 LILN 86 (245)
T ss_pred EEEC
Confidence 8765
No 356
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=93.79 E-value=2.4 Score=38.44 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=82.8
Q ss_pred CCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCC-C-C---HHHHHHHhc-CCccEEEeccCccccHHHH-----
Q 026023 11 NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTI-L-S---VEDIIALIG-DKCDGVIGQLTEDWGETLF----- 79 (244)
Q Consensus 11 ~~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~-~-~---~~~~~~~~~-~~ad~ii~~~~~~~~~~~l----- 79 (244)
.|..-.+|+||.+.....+.+.|++.|.++...+.-+.. . + -++....+. +++|.++..+...+. .++
T Consensus 7 ~pL~g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~-~~~~~l~~ 85 (381)
T PRK07239 7 APLAGFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFR-GWVEAADG 85 (381)
T ss_pred CCCCCcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHH-HHHHHHHH
Confidence 466678999998655556677888888887654322111 1 1 122333332 247876654321111 122
Q ss_pred --------HHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCC-CCCcchHHHHHHHHHHHHhChHHHHHHHHcCCC
Q 026023 80 --------AALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLY 150 (244)
Q Consensus 80 --------~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w 150 (244)
+.+.++ +++ ..|.+. ..++.+.|+.+.-.|. ..++.+++.. ..
T Consensus 86 ~~~~~~~~~~l~~~--~i~-aVG~~T----a~aL~~~G~~~~~~p~~~~~e~L~~~l----~~----------------- 137 (381)
T PRK07239 86 WGLADELLEALSSA--RLL-ARGPKA----TGAIRAAGLREEWSPASESSAEVLEYL----LE----------------- 137 (381)
T ss_pred cCChHHHHHHHcCC--eEE-EECccH----HHHHHHcCCCCccCCCCCccHHHHHHH----hc-----------------
Confidence 222222 443 333332 4667788998766653 3344444332 11
Q ss_pred CCCCCCcccccccCCCEEEEEcCC-----hHHHHHHHHHhccCCcEEEEEcCC
Q 026023 151 DGWLPNLFVGNLLKGQTVGVIGAG-----RIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 151 ~~~~~~~~~~~~l~g~tvgIvG~G-----~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
....|++|.|.-.| .....+.+.| +..|++|..+.-+
T Consensus 138 ----------~~~~g~~vli~~~~~~~~~~~~~~L~~~L-~~~G~~V~~~~vY 179 (381)
T PRK07239 138 ----------EGVAGKRIAVQLHGATDEWEPLPEFLEAL-RAAGAEVVPVPVY 179 (381)
T ss_pred ----------CCCCCCEEEEEcCCCccccCchHHHHHHH-HHCCCEEEEeCcE
Confidence 12567899998666 4445799998 8999987766655
No 357
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=93.78 E-value=0.15 Score=50.15 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=30.9
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|||.|.+|..+|..+|..-|++|..+|+++..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~ 340 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQG 340 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 589999999999999998732479999999998753
No 358
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.78 E-value=0.2 Score=44.60 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=43.5
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCC-------cEEEEEcCCcchH-HHH-HHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFK-------MNLIYYDLYQATR-LEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG-------~~V~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (244)
+|+|+|. |.||..++..| ...+ .+|..+|+.+..+ .+. ..+. ...............++.+.++.
T Consensus 4 kV~I~GAaG~VG~~la~~L-~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl----~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMI-AKGDVFGPDQPVILHLLDIPPALKALEGVVMEL----QDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHH-HhCcccCCCCCcEEEEEEcCCccccccceeeeh----hhccccccCCceecCCHHHHhCC
Confidence 6999999 99999999987 4533 4899999865321 111 0010 00000000011123578899999
Q ss_pred CCEEEEe
Q 026023 237 ADVVCTL 243 (244)
Q Consensus 237 sD~Vvl~ 243 (244)
||+|+++
T Consensus 79 aDiVI~t 85 (325)
T cd01336 79 VDVAILV 85 (325)
T ss_pred CCEEEEe
Confidence 9999875
No 359
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.76 E-value=0.076 Score=45.33 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=32.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~ 199 (244)
..|.+++|+|+|.|.+|..+++.| ...|. ++..+|...
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~L-a~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYL-AAAGVGTLTLVDFDT 66 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCE
Confidence 569999999999999999999999 58888 688877653
No 360
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=93.74 E-value=0.19 Score=41.98 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=28.7
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcC
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL 197 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~ 197 (244)
+.||++.|.|. |.||+.+|+.| ..-|++|+...+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l-~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRL-HKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcC
Confidence 35789999985 99999999999 688999888654
No 361
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=93.72 E-value=0.25 Score=44.24 Aligned_cols=74 Identities=11% Similarity=0.208 Sum_probs=49.9
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
.+.|++|.++|= ++...+++..++..+|++|..+.|..-...++..+. +... ...+...++++|.++.+|
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKAD 228 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccCC
Confidence 488999999998 578888888764456999999998653211222211 1111 122334579999999999
Q ss_pred EEEE
Q 026023 239 VVCT 242 (244)
Q Consensus 239 ~Vvl 242 (244)
+|..
T Consensus 229 vvyt 232 (338)
T PRK08192 229 ILYL 232 (338)
T ss_pred EEEE
Confidence 9875
No 362
>PRK09186 flagellin modification protein A; Provisional
Probab=93.72 E-value=0.24 Score=41.58 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=33.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l-~~~g~~v~~~~r~~~~ 40 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAI-LEAGGIVIAADIDKEA 40 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecChHH
Confidence 57899999996 79999999999 6889999999987643
No 363
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.71 E-value=0.29 Score=42.86 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=33.6
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.++.||++.|.|. |.||+.+|+.| ..-|++|+..++...
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L-~~~Ga~Vv~~~~~~~ 47 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGL-ARLGATVVVNDVASA 47 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCch
Confidence 5689999999986 67999999999 578999999987643
No 364
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.66 E-value=0.3 Score=43.77 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=23.5
Q ss_pred EEEEEcCChHHHHHHHHHhccC----------CcEEEEEc
Q 026023 167 TVGVIGAGRIGSAYARMMVEGF----------KMNLIYYD 196 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~af----------G~~V~~~~ 196 (244)
+|||+|+|.||+.+++.| ... +++|.++.
T Consensus 4 ~V~IiG~G~VG~~~~~~L-~~~~~~~~~~~g~~~~vvai~ 42 (341)
T PRK06270 4 KIALIGFGGVGQGVAELL-AEKREYLKKRYGLDLKVVAIA 42 (341)
T ss_pred EEEEECCCHHHHHHHHHH-HHhHHHHHHHcCCCEEEEEEE
Confidence 799999999999999987 433 67866553
No 365
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=93.56 E-value=0.24 Score=42.13 Aligned_cols=36 Identities=22% Similarity=0.102 Sum_probs=30.4
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
++.||++.|.|. +.||+++|+.| ..-|++|....++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~l-a~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQL-HAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEEecC
Confidence 478999999997 48999999999 5899999877554
No 366
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.56 E-value=0.19 Score=42.42 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=32.9
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
..+.|+++.|.|. |.||+.+++.| ...|++|+.++++
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~ 48 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVAL-AKAGADIIITTHG 48 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCC
Confidence 3588999999986 78999999999 6889999999887
No 367
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.55 E-value=0.23 Score=41.76 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.|+++.|.|. |.||+.+++.| ..-|++|+..+|++.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l-~~~G~~v~~~~r~~~~ 42 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLF-AREGAKVVVGARRQAE 42 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 478899999986 78999999999 6889999999988643
No 368
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.55 E-value=0.15 Score=44.74 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=44.3
Q ss_pred EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCCEEEE
Q 026023 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD~Vvl 242 (244)
+|.|.| .|.||+.+++.| ..-|.+|.+.+|++... ..... .+.. ........++.+.++.+|+|+.
T Consensus 2 kIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~--~~l~~-------~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKA--SFLKE-------WGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHh--hhHhh-------cCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 688998 699999999998 67899999999986431 11000 0111 1112233467888999998774
No 369
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.54 E-value=0.39 Score=41.95 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=40.2
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVCT 242 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vvl 242 (244)
.++||||.|+||+..+..+.+.=++++.+ +++.+.....+..+.+ + .+ ..+.+.+++++ +-|+|++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~-------G---i~-~~~~~~e~ll~~~dIDaV~i 70 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL-------G---VK-TSAEGVDGLLANPDIDIVFD 70 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC-------C---CC-EEECCHHHHhcCCCCCEEEE
Confidence 37999999999998866553444677665 5555543211111111 1 11 13457899986 4677887
Q ss_pred e
Q 026023 243 L 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 71 a 71 (285)
T TIGR03215 71 A 71 (285)
T ss_pred C
Confidence 5
No 370
>PRK15076 alpha-galactosidase; Provisional
Probab=93.54 E-value=0.23 Score=46.01 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=44.8
Q ss_pred CEEEEEcCChHHHHHHH--HHh--ccC-CcEEEEEcCCcchHH--HHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~--~la--~af-G~~V~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
.+|+|||.|++|-..+- .++ +++ |-+|..+|..+.... ....... .... .....+....++.+.++.||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~---~~~~-~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKL---AESL-GASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHH---HHhc-CCCeEEEEECCHHHHhCCCC
Confidence 47999999999944322 111 345 458999999864421 1111111 1111 11234444678999999999
Q ss_pred EEEEe
Q 026023 239 VVCTL 243 (244)
Q Consensus 239 ~Vvl~ 243 (244)
||+.+
T Consensus 78 fVv~t 82 (431)
T PRK15076 78 YVINA 82 (431)
T ss_pred EEeEe
Confidence 99976
No 371
>PRK08862 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.24 Score=41.49 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.|+++.|.|.++ ||+++|+.| ..-|++|+.++|+...
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~ 41 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSA 41 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 47899999999876 999999999 6899999999997653
No 372
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.52 E-value=0.22 Score=42.61 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=31.6
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+.||++.|.|.+ .||+++|+.| ..-|++|+..+|+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~l-a~~G~~vil~~r~~ 42 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQND 42 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHH-HHCCCEEEEEecch
Confidence 679999999997 5999999999 57899999888763
No 373
>PRK04148 hypothetical protein; Provisional
Probab=93.48 E-value=0.16 Score=39.35 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++++.+||+| -|..+|+.| ...|..|+++|.++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence 56789999999 999999998 6899999999999874
No 374
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.2 Score=42.12 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=33.4
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.++++.|.| .|.||..+++.| ..-|++|+..+|+..
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l-~~~G~~Vi~~~r~~~ 43 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLL-AQQGAHVIVSSRKLD 43 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 47889999998 678999999999 678999999998754
No 375
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.41 E-value=0.24 Score=41.39 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=32.8
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++++.|.| .|.||+.+++.| ..-|.+|..++|+...
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l-~~~g~~v~~~~r~~~~ 39 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRF-AEEGAKVAVFDLNREA 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHHH
Confidence 4688999998 588999999998 6889999999987643
No 376
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.37 E-value=0.36 Score=42.41 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=44.1
Q ss_pred EEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
|+|+|.|.+|..+|-.| ...| -++..+|...... +.....+...... ..........+ .+.++.||+|+++.
T Consensus 1 i~iiGaG~VG~~~a~~l-~~~~~~~el~l~D~~~~~~-~g~~~DL~~~~~~--~~~~~i~~~~~-~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFAL-IAKGLASELVLVDVNEEKA-KGDALDLSHASAF--LATGTIVRGGD-YADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCccHH-HHHHHhHHHhccc--cCCCeEEECCC-HHHhCCCCEEEEcC
Confidence 58999999999999987 5777 4799999976431 1111111111111 01112222234 57999999999863
No 377
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.36 E-value=0.25 Score=41.60 Aligned_cols=38 Identities=32% Similarity=0.315 Sum_probs=33.8
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.|+++.|.|. |.||+.+++.| ..-|.+|+..+|++..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l-~~~G~~v~~~~r~~~~ 43 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALEL-ARAGAAVAIADLNQDG 43 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCChHH
Confidence 67899999988 99999999999 6889999999998743
No 378
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.35 E-value=0.28 Score=46.01 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=51.9
Q ss_pred ccCCCEEEEEcC----------ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhh----hhcCC------CCC
Q 026023 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF----LKANG------EQP 221 (244)
Q Consensus 162 ~l~g~tvgIvG~----------G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~ 221 (244)
++.|++|+|+|+ ..-...+++.| ...|++|.+|||........ +.++.. ..... ...
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence 589999999998 56788999999 89999999999985442110 011000 00000 000
Q ss_pred ccccccCCHHHHhhhCCEEEEeC
Q 026023 222 VTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 222 ~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
......+++++.++.||+|+++.
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t 420 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILT 420 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECC
Confidence 01233457789999999999863
No 379
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.31 E-value=0.26 Score=41.44 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=34.1
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
..+.|+++.|.|. |.||+.+++.| ..-|++|+.++|+..
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l-~~~G~~v~~~~r~~~ 46 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARAL-AGAGAHVLVNGRNAA 46 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHH-HHcCCeEEEEeCCHH
Confidence 3588999999986 78999999998 578999999999864
No 380
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.28 E-value=0.23 Score=46.15 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=32.6
Q ss_pred cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
..-.+++|.|.| .|-||+.+++.| ..-|.+|+++++..
T Consensus 115 ~~~~~~kILVTGatGfIGs~Lv~~L-l~~G~~V~~ld~~~ 153 (442)
T PLN02206 115 LKRKGLRVVVTGGAGFVGSHLVDRL-MARGDSVIVVDNFF 153 (442)
T ss_pred cccCCCEEEEECcccHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence 344678999999 599999999999 78899999998753
No 381
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.24 Score=41.42 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l-~~~g~~vi~~~r~~~ 41 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEAL-AREGASVVVADINAE 41 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 367899999997 99999999998 678999999999854
No 382
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.25 E-value=0.17 Score=37.71 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=33.6
Q ss_pred cCChHHHHHHHHHhccC----CcEEEEEcCCc---chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023 172 GAGRIGSAYARMMVEGF----KMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC 241 (244)
Q Consensus 172 G~G~IG~~vA~~la~af----G~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv 241 (244)
|+|.||+.+++.| +.. +++|.++-.+. ......... ......++++++. ..|+||
T Consensus 1 G~G~VG~~l~~~l-~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQL-KEQQERIDLEVVGVADRSMLISKDWAASFP--------------DEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHH-HHTHHHCEEEEEEEEESSEEEETTHHHHHT--------------HSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHH-HhCcccCCEEEEEEEECCchhhhhhhhhcc--------------cccccCCHHHHhcCcCCCEEE
Confidence 8999999999998 554 78876665444 111111111 1223468999999 899887
No 383
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.24 E-value=0.18 Score=44.89 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+++++|.|.|. |-||+.+++.| ..-|.+|+++++...
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L-~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEEL-LFLNQTVIGLDNFST 50 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence 367789999995 99999999999 788999999998653
No 384
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.23 E-value=0.26 Score=39.71 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=28.0
Q ss_pred EEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~ 199 (244)
+|+|+|.|.+|..+++.| ...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~L-a~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLL-ARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHH-HHcCCCeEEEEeCCE
Confidence 489999999999999999 57898 598888875
No 385
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=93.22 E-value=0.13 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.2
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+|||+|-|..|..+++.+ +.+|.+|+.+++++..
T Consensus 1 kililG~g~~~~~l~~aa-~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 589999999999999995 9999999999998754
No 386
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.22 E-value=0.24 Score=41.62 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L-~~~G~~vvl~~r~~~~ 45 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGL-AEYGAEIIINDITAER 45 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcCCHHH
Confidence 578999999984 78999999999 6789999999998543
No 387
>PRK06194 hypothetical protein; Provisional
Probab=93.19 E-value=0.23 Score=42.57 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++.++++.|.|. |.||+.+++.| ..-|++|+.++++..
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l-~~~G~~V~~~~r~~~ 41 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIG-AALGMKLVLADVQQD 41 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEeCChH
Confidence 367889999985 88999999998 688999999998754
No 388
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.27 Score=41.93 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.||++.|.|. |.||+++|+.| ..-|++|+.++|+...
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l-~~~G~~V~~~~r~~~~ 44 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVL-ARAGADVILLSRNEEN 44 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 478999999987 57999999999 6889999999997543
No 389
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.16 E-value=0.99 Score=39.96 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=49.2
Q ss_pred cCCCEEEEEcC---ChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (244)
Q Consensus 163 l~g~tvgIvG~---G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD 238 (244)
+.|.+|.++|= +++..+++..+ ..||+ +|....|..-.. ++ .....+...+++++.++.+|
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~p-~~-------------~~~~~~~~~~d~~ea~~~aD 219 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLLP-DK-------------VGNDSIKKFTELKPSLLNSD 219 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccCc-Cc-------------cccceEEEEcCHHHHhCCCC
Confidence 78899999998 59999999997 79999 999999864221 11 00012334579999999999
Q ss_pred EEEE
Q 026023 239 VVCT 242 (244)
Q Consensus 239 ~Vvl 242 (244)
+|..
T Consensus 220 vvy~ 223 (310)
T PRK13814 220 VIVT 223 (310)
T ss_pred EEEE
Confidence 9975
No 390
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.16 E-value=0.34 Score=42.31 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=35.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~ 201 (244)
....|+++.|+|.|-.++.++--| .-.|+ +|..++|+...
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r 162 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER 162 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH
Confidence 346899999999999999999998 79996 79999998754
No 391
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.15 E-value=0.24 Score=43.10 Aligned_cols=40 Identities=35% Similarity=0.407 Sum_probs=34.9
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~ 45 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRL-HARGAKLALVDLEEAE 45 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 4588999999986 78999999998 6899999999997643
No 392
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.14 E-value=0.12 Score=45.40 Aligned_cols=72 Identities=22% Similarity=0.397 Sum_probs=51.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch--HHHHHHhhhhhhhhcCCCC-CccccccCCHHHHhhhC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREA 237 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~s 237 (244)
..+...+|.|+|.|-+|..-||. |-++|++|...|.+... ..++.+ +.. ..-......+++.+.++
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~rl~~ldd~f----------~~rv~~~~st~~~iee~v~~a 232 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNIDRLRQLDDLF----------GGRVHTLYSTPSNIEEAVKKA 232 (371)
T ss_pred CCCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHHHHhhhhHhh----------CceeEEEEcCHHHHHHHhhhc
Confidence 45777889999999999999999 59999999999998643 112211 111 11111334789999999
Q ss_pred CEEEEe
Q 026023 238 DVVCTL 243 (244)
Q Consensus 238 D~Vvl~ 243 (244)
|+|+-.
T Consensus 233 DlvIga 238 (371)
T COG0686 233 DLVIGA 238 (371)
T ss_pred cEEEEE
Confidence 999854
No 393
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.13 E-value=0.12 Score=45.59 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=34.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~ 201 (244)
=.|+|+.|+|+|.+|.+++.- |++.|+ +++++|-++.+
T Consensus 191 ~~GstvAVfGLG~VGLav~~G-aka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMG-AKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCCEEEEEecchHHHHHHHh-HHhcCcccEEEEecCHHH
Confidence 378999999999999999999 599999 79999998765
No 394
>PLN02427 UDP-apiose/xylose synthase
Probab=93.12 E-value=0.19 Score=45.45 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=33.2
Q ss_pred ccccCCCEEEEEc-CChHHHHHHHHHhccC-CcEEEEEcCCcc
Q 026023 160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQA 200 (244)
Q Consensus 160 ~~~l~g~tvgIvG-~G~IG~~vA~~la~af-G~~V~~~~~~~~ 200 (244)
+..+..++|.|.| .|-||+.+++.| ..- |.+|++++++..
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L-~~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKL-MTETPHKVLALDVYND 50 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHH-HhcCCCEEEEEecCch
Confidence 4567788999999 599999999998 565 589999998753
No 395
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.12 E-value=0.23 Score=35.82 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=38.9
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEEE
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVCT 242 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vvl 242 (244)
.++.|+|+|+.|++++..+.+..|++ +..+|..++.- |+ ....+++. .+++++.+. .|+-++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~--------G~-----~i~gipV~--~~~~~l~~~~~i~iaii 68 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI--------GK-----EIGGIPVY--GSMDELEEFIEIDIAII 68 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT--------TS-----EETTEEEE--SSHHHHHHHCTTSEEEE
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc--------Cc-----EECCEEee--ccHHHhhhhhCCCEEEE
Confidence 47999999999998864333555554 45556555431 11 11122332 367777776 888887
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 69 ~V 70 (96)
T PF02629_consen 69 TV 70 (96)
T ss_dssp ES
T ss_pred Ec
Confidence 64
No 396
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.12 E-value=0.16 Score=39.96 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=25.4
Q ss_pred EEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~ 197 (244)
+|||+|+|+||+.+++.+...-++++.+...
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence 6999999999999999864356788777554
No 397
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.09 E-value=0.092 Score=40.30 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=29.2
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~ 199 (244)
.++|.|+|.|.+|.++|+.| ...|+ ++..+|+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L-~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNL-ARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHH-HHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHH-HHhCCCceeecCCcc
Confidence 57999999999999999999 57798 799988764
No 398
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=93.09 E-value=0.27 Score=41.63 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=32.3
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.|+++.|.| .|.||+.+|+.| ...|++|+...++..
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l-~~~G~~vvi~~~~~~ 42 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRF-GKEKAKVVINYRSDE 42 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCCH
Confidence 47899999998 577999999999 689999988877543
No 399
>PRK12742 oxidoreductase; Provisional
Probab=93.09 E-value=0.41 Score=39.66 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=31.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.+.|+++.|.|. |.||+.+|+.| ...|++|+...++.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~~ 40 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAGS 40 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCC
Confidence 367899999995 89999999998 78999998876543
No 400
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.06 E-value=0.31 Score=41.18 Aligned_cols=38 Identities=26% Similarity=0.215 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+..
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l-~~~G~~V~~~~r~~~ 42 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAF-AAEGCHLHLVARDAD 42 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence 367899999998 68999999999 678999999998764
No 401
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.05 E-value=0.24 Score=41.54 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=33.3
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.|+++.|.| .|.||+.+++.| ..-|.+|+..+|++.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l-~~~g~~v~~~~r~~~~ 40 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALAL-AKEGAKVVIADLNDEA 40 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 4678999999 599999999998 6889999999998654
No 402
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.04 E-value=0.26 Score=43.57 Aligned_cols=75 Identities=21% Similarity=0.196 Sum_probs=46.1
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~ 244 (244)
.++.|+|.|.||..++-+| .-.|..|+.+.|.++. +++-. -|-.................-.+.+..+|+|++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L-~~~g~~V~~~~R~~~~--~~l~~-~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARL-AKAGHDVTLLVRSRRL--EALKK-KGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHH-HhCCCeEEEEecHHHH--HHHHh-CCeEEecCCCccccccccccChhhcCCCCEEEEEe
Confidence 3799999999999999999 6777888888887652 22111 12111111111011112234456677999999874
No 403
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.04 E-value=0.38 Score=40.93 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=32.4
Q ss_pred cccCCCEEEEEcCCh---HHHHHHHHHhccCCcEEEEEcCCc
Q 026023 161 NLLKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~---IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
..+.||++.|.|.++ ||+++|+.| ..-|++|+..+|+.
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~l-a~~G~~v~~~~r~~ 44 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLA-KKHGAELWFTYQSE 44 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHH-HHcCCEEEEEeCch
Confidence 357899999999974 999999998 57899999888763
No 404
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.02 E-value=0.32 Score=44.40 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=50.2
Q ss_pred cCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 026023 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (244)
Q Consensus 163 l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (244)
..|++|+|+|+. .-+..+++.| ..-|++|.+|||..... . .+.....+++++
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~-~----------------~~~~~~~~~~~~ 355 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKED-S----------------FFNSRLERDLAT 355 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCch-h----------------hcCCeeeCCHHH
Confidence 478999999994 5577899999 89999999999985431 1 113446689999
Q ss_pred HhhhCCEEEEe
Q 026023 233 VLREADVVCTL 243 (244)
Q Consensus 233 ll~~sD~Vvl~ 243 (244)
.++.||.|++.
T Consensus 356 ~~~~~~~~~~~ 366 (388)
T PRK15057 356 FKQQADVIISN 366 (388)
T ss_pred HHHhCCEEEEc
Confidence 99999999874
No 405
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.02 E-value=0.32 Score=47.95 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=31.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|||.|.+|..+|..++..-|++|..+|+++..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~ 345 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQG 345 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 689999999999999999743679999999998753
No 406
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.02 E-value=0.23 Score=42.75 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+.||++.|.|.+ .||+++|+.| ..-|++|+..+|+.
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~l-a~~G~~Vil~~r~~ 41 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKAC-FEQGAELAFTYLNE 41 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEecCH
Confidence 578999999984 7999999999 57899999998874
No 407
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.98 E-value=0.14 Score=37.89 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=28.2
Q ss_pred EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.|+|+|++|+.+++.| +..+.+|..+++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHH
Confidence 56999999999999999 7877799999998754
No 408
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.98 E-value=0.38 Score=42.85 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=43.9
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCcch--HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (244)
+|+|+|. |.+|..+|-.| ...|. ++..+|..... ....-.|.... .... ...... ..+..+-+++
T Consensus 5 KV~IIGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~-~~~~-~~~~~i--~~~~~~~~~d 79 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRI-ASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDC-AFPL-LAGVVA--TTDPEEAFKD 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHH-HhCCcccCCCccEEEEEecCCcccccchHHHHHhhc-cccc-cCCcEE--ecChHHHhCC
Confidence 7999998 99999999987 55564 79999985421 11111111000 0000 001111 1467899999
Q ss_pred CCEEEEe
Q 026023 237 ADVVCTL 243 (244)
Q Consensus 237 sD~Vvl~ 243 (244)
||+|+++
T Consensus 80 aDvVVit 86 (323)
T TIGR01759 80 VDAALLV 86 (323)
T ss_pred CCEEEEe
Confidence 9999986
No 409
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.98 E-value=0.31 Score=40.49 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEE-cCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~-~~~~~~ 201 (244)
++.++++.|.|. |.||+.+++.| ..-|++|+.. +|+...
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l-~~~g~~v~~~~~r~~~~ 42 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELL-AKEGAKVVIAYDINEEA 42 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEcCCCHHH
Confidence 367889999985 89999999998 5779999988 887543
No 410
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.94 E-value=0.34 Score=42.22 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=46.4
Q ss_pred CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhh-cCCC--CCccccccCCHHHHhhhCCE
Q 026023 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE--QPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~ell~~sD~ 239 (244)
.|+++.|.| .|-||+.+++.| ..-|.+|.+++|+..... .... ...... .... ..........++++++.+|+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L-~~~g~~V~~~~r~~~~~~-~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 79 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLL-LQRGYTVKATVRDPNDPK-KTEH-LLALDGAKERLHLFKANLLEEGSFDSVVDGCEG 79 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHH-HHCCCEEEEEEcCCCchh-hHHH-HHhccCCCCceEEEeccccCcchHHHHHcCCCE
Confidence 468999999 699999999998 788999999888654211 1000 000000 0000 01122233468888999998
Q ss_pred EEE
Q 026023 240 VCT 242 (244)
Q Consensus 240 Vvl 242 (244)
|+-
T Consensus 80 Vih 82 (322)
T PLN02662 80 VFH 82 (322)
T ss_pred EEE
Confidence 764
No 411
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.92 E-value=0.93 Score=39.46 Aligned_cols=89 Identities=27% Similarity=0.346 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccC----Cc-------E
Q 026023 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (244)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~af----G~-------~ 191 (244)
+|=-+++-+|+.+|- .+..|..+++.|+|.|.-|-.+|++| ... |+ +
T Consensus 4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll-~~~~~~~G~~~eeA~~~ 61 (279)
T cd05312 4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLI-VSAMVREGLSEEEARKK 61 (279)
T ss_pred HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHH-HHHHHHcCCChhhccCe
Confidence 455667777776654 23568899999999999999999998 566 77 7
Q ss_pred EEEEcCCcc-----hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023 192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC 241 (244)
Q Consensus 192 V~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv 241 (244)
+..+|+..- +...++-..| .+. ... ....+|.|+++ ..|+++
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~---a~~-~~~----~~~~~L~e~i~~v~ptvlI 110 (279)
T cd05312 62 IWLVDSKGLLTKDRKDLTPFKKPF---ARK-DEE----KEGKSLLEVVKAVKPTVLI 110 (279)
T ss_pred EEEEcCCCeEeCCCCcchHHHHHH---Hhh-cCc----ccCCCHHHHHHhcCCCEEE
Confidence 999998741 1111111111 111 110 12368999999 889886
No 412
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=92.90 E-value=0.36 Score=43.35 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=41.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHhccC-CcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242 (244)
Q Consensus 166 ~tvgIvG~-G~IG~~vA~~la~af-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl 242 (244)
.+|+|+|. |.+|+++++.| ..+ +.++.+. +++.... +...+.|... .......+.. .+.++++.++|+|++
T Consensus 1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sag-k~~~~~~~~l---~~~~~~~~~~-~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESAG-KPVSEVHPHL---RGLVDLNLEP-IDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhcC-CChHHhCccc---cccCCceeec-CCHHHhhcCCCEEEE
Confidence 37999998 99999999999 566 7787743 5443110 1110111000 0000111111 256677778999998
Q ss_pred eC
Q 026023 243 LC 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 75 al 76 (346)
T TIGR01850 75 AL 76 (346)
T ss_pred CC
Confidence 74
No 413
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.90 E-value=0.25 Score=44.03 Aligned_cols=40 Identities=23% Similarity=0.104 Sum_probs=34.7
Q ss_pred ccccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 160 ~~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+++..+++|.|.| .|-||+.+++.| ..-|.+|++.+|+..
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L-~~~G~~V~~~~r~~~ 45 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLL-LQRGYTVHATLRDPA 45 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChH
Confidence 4677899999999 599999999998 678999999888754
No 414
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.87 E-value=0.39 Score=40.77 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=32.6
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.+.||++.|.|. +.||+++|+.| ..-|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~l-a~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVA-QEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHH-HHCCCEEEEecCcc
Confidence 378999999996 68999999999 68999999998765
No 415
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=92.87 E-value=0.2 Score=49.51 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=31.4
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|||.|.+|..+|..++ .-|++|..+|+++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~ 370 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAG 370 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHH
Confidence 58999999999999999984 669999999998754
No 416
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.84 E-value=0.3 Score=40.60 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=34.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|. |.||+.+++.| ..-|.+|+.++|+...
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l-~~~g~~V~~~~r~~~~ 45 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVAL-AQRGARVVAAARNAAA 45 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 478899999998 89999999998 6789999999998643
No 417
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.83 E-value=0.16 Score=42.00 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=33.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (244)
Q Consensus 161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~ 198 (244)
..|..++|+|+|.|.+|..+|+.| ...|. ++..+|+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~L-a~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINL-ARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHH-HHcCCCEEEEECCC
Confidence 458899999999999999999999 57899 69999987
No 418
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.83 E-value=0.33 Score=40.34 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=32.9
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.++++.|.| .|.||+.+++.| ..-|++|+..+|++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L-~~~G~~Vi~~~r~~~~ 43 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIAL-AKEGVNVGLLARTEEN 43 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 35678999998 568999999998 6889999999998643
No 419
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=92.83 E-value=0.21 Score=37.53 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=42.0
Q ss_pred CEEEEEc----CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 166 ~tvgIvG----~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
|++.|+| -++.|..+.+.| +..|.+|+.+++...+ . .+..-+.++.|.-...|.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~--i-----------------~G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGE--I-----------------LGIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSE--E-----------------TTEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceE--E-----------------CcEEeeccccCCCCCCCEEE
Confidence 5899999 789999999998 8899999999998754 1 11223467887447888888
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+.+
T Consensus 61 v~~ 63 (116)
T PF13380_consen 61 VCV 63 (116)
T ss_dssp E-S
T ss_pred EEc
Confidence 753
No 420
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.80 E-value=0.31 Score=43.02 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=27.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHhccCCc--EEEEEcCCc
Q 026023 166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQ 199 (244)
Q Consensus 166 ~tvgIvG~-G~IG~~vA~~la~afG~--~V~~~~~~~ 199 (244)
.+|+|+|. |.+|..++..| ...|. +|..+|+..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l-~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLL-AKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHH-HhCCCCCEEEEEECcc
Confidence 37999997 99999999997 46565 599999854
No 421
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.80 E-value=0.32 Score=41.77 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=31.5
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
-+.||++.|.|. +.||+++|+.| ..-|++|+...|+
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~l-a~~G~~V~l~~r~ 45 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKAC-RAAGAELAFTYQG 45 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCc
Confidence 468899999998 47999999999 6899999888765
No 422
>PRK06398 aldose dehydrogenase; Validated
Probab=92.80 E-value=0.23 Score=42.16 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l-~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRL-KEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCcc
Confidence 478999999995 68999999999 789999999998754
No 423
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.79 E-value=0.38 Score=40.92 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.7
Q ss_pred cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
+.||++.|-|. +.||+++|+.| ...|++|+...+.
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l-~~~G~~v~~~~~~ 41 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKAC-REQGAELAFTYVV 41 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCc
Confidence 78999999994 57999999999 6899999988765
No 424
>PRK08303 short chain dehydrogenase; Provisional
Probab=92.76 E-value=0.34 Score=42.54 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=33.1
Q ss_pred cccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 161 ~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.++.||++.|.|.+ .||+++|+.| ..-|++|+..+|+.
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~l-a~~G~~Vv~~~r~~ 42 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVEL-GAAGATVYVTGRST 42 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeccc
Confidence 35789999999985 6999999999 68999999998874
No 425
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.71 E-value=0.32 Score=41.11 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.1
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+.||++.|.|.+ .||+++|+.| ..-|++|+..+|+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~l-a~~G~~Vi~~~r~~ 43 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAI-KDQGATVIYTYQND 43 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEecCch
Confidence 789999999986 7999999999 57899999998863
No 426
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.71 E-value=0.37 Score=41.03 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=30.3
Q ss_pred cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
+.||++.|.|. +.||+++|+.| ..-|++|+..++.
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l-~~~G~~v~~~~~~ 41 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKAC-KREGAELAFTYVG 41 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHH-HHCCCeEEEEccc
Confidence 67899999994 58999999999 6899999887654
No 427
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.69 E-value=0.27 Score=41.55 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=32.7
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++.||++.|.| .|.||+.+|++| ..-|++|+.++++..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l-~~~G~~vv~~~~~~~ 43 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGL-AKAGADIVGVGVAEA 43 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCchH
Confidence 47899999998 578999999999 689999999988653
No 428
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.66 E-value=0.16 Score=45.81 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.+++|.|.|. |.||+.+++.| ..-|.+|++++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L-~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRL-KAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHH-HhCCCEEEEEEecc
Confidence 6689999997 99999999998 78899999999864
No 429
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.65 E-value=0.13 Score=49.56 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
...+.|+|+|++|+.+++.| +..|.+++..|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~ 435 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISA 435 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHH
Confidence 35699999999999999999 8999999999998754
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.62 E-value=0.26 Score=48.60 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=31.6
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|||.|..|..+|..+| .-|.+|..+|++...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHH
Confidence 68999999999999999985 669999999999754
No 431
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.56 E-value=0.24 Score=48.76 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=31.5
Q ss_pred CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++|+|||.|.+|..+|..+| .-|++|..+|+++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHS 348 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHH
Confidence 58999999999999999985 669999999998754
No 432
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.56 E-value=0.35 Score=40.24 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=32.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+|++.|.|. |.||+.+++.| ..-|++|+.++|++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~ 42 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAF-AKAGWDLALVARSQDA 42 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 4678999985 99999999998 6789999999998654
No 433
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.55 E-value=0.45 Score=39.40 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=31.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++++.|.|. |.||+.+++.| ..-|.+|+...++..+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l-~~~G~~v~~~~~~~~~ 41 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERL-AAQGANVVINYASSEA 41 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCchh
Confidence 57789999985 89999999998 5779999777776543
No 434
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.55 E-value=0.43 Score=44.07 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=30.9
Q ss_pred cCC-CEEEEEcCChHHHHHHHHHhccC--CcEEEEEcCCcc
Q 026023 163 LKG-QTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g-~tvgIvG~G~IG~~vA~~la~af--G~~V~~~~~~~~ 200 (244)
+.+ +++.|+|+|.+|...++.| ... |++|.++|....
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l-~~~~~~~~v~~~D~~~~ 43 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHL-RKYQPQLTVKVIDTRET 43 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHH-HhcCCCCeEEEEeCCCC
Confidence 455 7899999999999999998 455 489999997653
No 435
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.26 Score=43.86 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.++++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~l-a~~G~~Vvl~~R~~~~ 43 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAF-ARRGARLVLAARDEEA 43 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence 478899999998 78999999998 6899999999998643
No 436
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=92.53 E-value=1.8 Score=36.06 Aligned_cols=146 Identities=19% Similarity=0.074 Sum_probs=78.2
Q ss_pred CeEEEEeCCCCc-hHHHHHHHhCCCeEEEeccCCC---CCCH-HHHHHHhcCCccEEEeccCccccHHHHHHhh-----c
Q 026023 15 KYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKT---ILSV-EDIIALIGDKCDGVIGQLTEDWGETLFAALS-----R 84 (244)
Q Consensus 15 ~~~ilv~~~~~~-~~~~~~l~~~~~~v~~~~~~~~---~~~~-~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p-----~ 84 (244)
||+|+++.+-+. ..+.+.|++.|.++...+.-+. ..+. ......+. .+|.++..+...+ ..+++.+. .
T Consensus 1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~d~iiftS~~av-~~~~~~~~~~~~~~ 78 (249)
T PRK05928 1 MMKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAAL-GADWVIFTSKNAV-EFLLSALKKKKLKW 78 (249)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCC-CCCEEEEECHHHH-HHHHHHHHhcCcCC
Confidence 488999987543 3566778888888765432211 1111 12223344 4887665432111 12233222 1
Q ss_pred cCCcEEEEcccCCCccChHHHhhCCcEEEecCC-CCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccccccc
Q 026023 85 AGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL 163 (244)
Q Consensus 85 l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l 163 (244)
+ +-....+.|-. -..++++.|+.....|. .++...++.. .. ..+
T Consensus 79 ~--~~~~~~avG~~--Ta~~l~~~G~~~~~~~~~~~~~~l~~~l----~~---------------------------~~~ 123 (249)
T PRK05928 79 P--KNKKYAAIGEK--TALALKKLGGKVVFVPEDGESSELLLEL----PE---------------------------LLL 123 (249)
T ss_pred C--CCCEEEEECHH--HHHHHHHcCCCccccCCCCcChHHHHhC----hh---------------------------hhc
Confidence 1 11222233321 24566678887655443 2222222211 00 115
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
.|+++.+..-......+.+.| +..|.+|..+.-+
T Consensus 124 ~~~~ili~~~~~~~~~l~~~L-~~~G~~v~~~~~Y 157 (249)
T PRK05928 124 KGKRVLYLRGNGGREVLGDTL-EERGAEVDECEVY 157 (249)
T ss_pred CCCEEEEECCCCCHHHHHHHH-HHCCCEEeEEEEE
Confidence 788999998888888899998 8999887765544
No 437
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.53 E-value=0.32 Score=41.45 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.|+++.|.|. |.||+.+++.| ..-|++|+..+|++..
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~ 41 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEAL 41 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence 367889999986 88999999998 6789999999987643
No 438
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.51 E-value=0.36 Score=41.44 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=32.3
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+.||++.|.|.+ .||+++|+.| ..-|++|..++|+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~l-a~~Ga~V~~~~r~~ 43 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQL-AAQGAELAFTYQGE 43 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHH-HhCCCEEEEecCch
Confidence 689999999998 6999999999 68999999998764
No 439
>PRK10206 putative oxidoreductase; Provisional
Probab=92.51 E-value=0.46 Score=42.55 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=39.7
Q ss_pred EEEEEcCChHHHH-HHHHHhcc-CCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023 167 TVGVIGAGRIGSA-YARMMVEG-FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC 241 (244)
Q Consensus 167 tvgIvG~G~IG~~-vA~~la~a-fG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv 241 (244)
++||||+|.|++. .+..+... =+++|.+ +|+.+.. +++.+.| + ....+++++++|+ +.|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~--~~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKP--EEQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhH--HHHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence 7999999999864 34433122 3688765 6766432 2222222 1 1223578999996 568898
Q ss_pred EeC
Q 026023 242 TLC 244 (244)
Q Consensus 242 l~~ 244 (244)
+++
T Consensus 70 I~t 72 (344)
T PRK10206 70 VCT 72 (344)
T ss_pred EeC
Confidence 864
No 440
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.50 E-value=0.38 Score=41.05 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=34.2
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
..+.++++.|.|. |.||+.+++.| ..-|++|..++|+..
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l-~~~G~~V~~~~r~~~ 45 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKEL-ARAGAKVAILDRNQE 45 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 3578999999996 89999999999 688999999999754
No 441
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.49 E-value=0.21 Score=44.42 Aligned_cols=72 Identities=21% Similarity=0.140 Sum_probs=42.6
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCcchHHHHH--HhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATRLEKF--VTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (244)
+|+|+|. |+||..+|-.| ...|. .+..+|..+..+..+. .|.. ..............+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l-~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~----d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMI-ARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM----DCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHH-HhccccCCCCccEEEEEecCCcccccceeEeehh----cccchhcCceeccCChHHHhCC
Confidence 5899999 99999999987 55444 5889998543210110 0000 0000000111122366899999
Q ss_pred CCEEEEe
Q 026023 237 ADVVCTL 243 (244)
Q Consensus 237 sD~Vvl~ 243 (244)
||+|++.
T Consensus 76 aDiVVit 82 (324)
T TIGR01758 76 VDVAILV 82 (324)
T ss_pred CCEEEEc
Confidence 9999975
No 442
>PRK06196 oxidoreductase; Provisional
Probab=92.49 E-value=0.41 Score=41.92 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~ 62 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDV 62 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 478899999997 78999999999 6889999999998643
No 443
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.45 E-value=0.47 Score=42.03 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~ 201 (244)
.|++|.|.|.|.+|...++.+ +..|+ +|+++++++..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~ 206 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRS 206 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHH
Confidence 588999999999999999995 99999 68889887643
No 444
>PRK07856 short chain dehydrogenase; Provisional
Probab=92.43 E-value=0.23 Score=41.84 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++.||++.|.|. |.||+.+++.| ..-|.+|+..+|+..
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l-~~~g~~v~~~~r~~~ 41 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAF-LAAGATVVVCGRRAP 41 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCChh
Confidence 478999999985 68999999999 678999999998753
No 445
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.41 E-value=0.42 Score=39.56 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=31.2
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
...+++.|.| .|.||+.+++.| ..-|.+|+...++...
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l-~~~g~~v~~~~~~~~~ 42 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRL-ARAGADVVVHYRSDEE 42 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCCHH
Confidence 4567899997 599999999998 7889998887776544
No 446
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.38 E-value=0.38 Score=40.98 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=33.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l-~~~G~~V~~~~r~~~~ 43 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGL-VAAGAAVMIVGRNPDK 43 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 67899999996 89999999998 6889999999987543
No 447
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.36 E-value=0.27 Score=44.81 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=34.1
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
....+++|.|.|. |.||+.+++.| ..-|.+|.+++|+..
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~L-l~~G~~V~~l~R~~~ 95 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVREL-VRRGYNVVAVAREKS 95 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEEechh
Confidence 4568889999986 99999999998 678999999999764
No 448
>PRK06182 short chain dehydrogenase; Validated
Probab=92.35 E-value=0.34 Score=41.35 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=32.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++++.|.|. |.||+.+++.| ..-|++|++.+|+...
T Consensus 2 ~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~ 39 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRL-AAQGYTVYGAARRVDK 39 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 4689999995 89999999998 6789999999998643
No 449
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.34 E-value=0.33 Score=40.96 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=34.1
Q ss_pred cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
..+.|+++.|.| .|.||..+|+.| ...|++|+..+|+..
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l-~~~G~~V~~~~r~~~ 47 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEAL-GEAGARVVLSARKAE 47 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence 347899999998 599999999999 678999999999764
No 450
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.34 E-value=0.4 Score=42.66 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=42.0
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCc--chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (244)
+|+|+|. |+||..+|..| ..-|. .+..+|... ........|.. ...... .....+ ..+..+.++.
T Consensus 2 KV~IiGAaG~VG~~~a~~L-~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~-d~~~~~-~~~~~i--~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLI-ASGELFGDDQPVILHLLDIPPAMKALEGVVMELQ-DCAFPL-LKGVVI--TTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHH-HhCCccCCCCceEEEEEecCCccCccceeeeehh-hhcccc-cCCcEE--ecChHHHhCC
Confidence 7999999 99999999987 34332 588999875 21000000000 000000 001111 1467899999
Q ss_pred CCEEEEe
Q 026023 237 ADVVCTL 243 (244)
Q Consensus 237 sD~Vvl~ 243 (244)
||+|++.
T Consensus 77 aDiVVit 83 (323)
T cd00704 77 VDVAILV 83 (323)
T ss_pred CCEEEEe
Confidence 9999975
No 451
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.32 E-value=0.35 Score=48.32 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=43.7
Q ss_pred EEEEEcCChHHHHH-HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 167 TVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 167 tvgIvG~G~IG~~v-A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
++.|+|+|.+|... |+.| +..|.+|.++|....+..++ .+ ..+. .+.. ..-.+.+..+|+||+.
T Consensus 6 ~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~-L~-------~~gi---~~~~-g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK-LK-------AKGA---RFFL-GHQEEHVPEDAVVVYS 70 (809)
T ss_pred eEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH-HH-------HCCC---EEeC-CCCHHHcCCCCEEEEC
Confidence 69999999999998 9998 89999999999875442222 11 1111 1111 1223667789999864
No 452
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.31 E-value=0.43 Score=39.87 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.8
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
+.++++.|.| .|.||+.+|++| ..-|++|+...++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l-~~~G~~vv~~~~~ 38 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAF-AREGARVVVNYHQ 38 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHH-HHCCCeEEEEcCC
Confidence 5788999998 689999999998 6889999876554
No 453
>PRK06198 short chain dehydrogenase; Provisional
Probab=92.22 E-value=0.32 Score=40.98 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcE-EEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~-V~~~~~~~~ 200 (244)
.+.++++.|.|. |.||+.+++.| ...|++ |+.++|+..
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l-~~~G~~~V~~~~r~~~ 42 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAF-AERGAAGLVICGRNAE 42 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHH-HHCCCCeEEEEcCCHH
Confidence 478899999985 78999999998 688999 999998754
No 454
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.21 E-value=0.36 Score=40.49 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=29.2
Q ss_pred CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
|++.|.| .|.||+.+++.| ..-|++|+.++|+..+
T Consensus 3 k~vlItG~sg~iG~~la~~L-~~~g~~vi~~~r~~~~ 38 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARAL-AAAGFDLAINDRPDDE 38 (256)
T ss_pred cEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecCchh
Confidence 5677776 489999999999 6889999999987543
No 455
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.19 E-value=0.34 Score=41.12 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|.+ .||+.+++.| ..-|++|+..+|+...
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l-~~~G~~Vi~~~r~~~~ 46 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAF-AEAGADVLIAARTESQ 46 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 4789999999865 6999999998 6789999999998643
No 456
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.14 E-value=0.41 Score=40.17 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=30.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
++++.|.|. |.||+.+++.| ..-|++|++.+|+..
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l-~~~G~~v~~~~r~~~ 37 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRL-ARKGHNVIAGVQIAP 37 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 568888885 89999999998 688999999998754
No 457
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.14 E-value=0.35 Score=43.04 Aligned_cols=74 Identities=19% Similarity=0.105 Sum_probs=44.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCcchH--HHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 026023 166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (244)
Q Consensus 166 ~tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (244)
++|+|+|. |+||..+|-.| -.-|. ++..+|.....+ .....|.... ..... ....+ . .+..+-++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~-~~~~~-~~~~i-~-~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRI-ASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC-AFPLL-AEIVI-T-DDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHH-HhccccCCCCceEEEEEecCCcccccceeehhhhhc-ccccc-CceEE-e-cCcHHHhC
Confidence 48999999 99999999987 45554 799999853220 0110110000 00000 01112 2 46689999
Q ss_pred hCCEEEEeC
Q 026023 236 EADVVCTLC 244 (244)
Q Consensus 236 ~sD~Vvl~~ 244 (244)
+||+|+++.
T Consensus 78 daDivvita 86 (322)
T cd01338 78 DADWALLVG 86 (322)
T ss_pred CCCEEEEeC
Confidence 999999863
No 458
>PRK08324 short chain dehydrogenase; Validated
Probab=92.11 E-value=0.31 Score=47.68 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=35.4
Q ss_pred cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
..+.|+++.|.| .|.||+.+++.| ...|++|+.++|+...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 457899999999 599999999998 7889999999998644
No 459
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.11 E-value=0.46 Score=39.68 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=33.0
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.|+++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~ 41 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLF-AREGARVVVADRDAEA 41 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHH-HHCCCeEEEecCCHHH
Confidence 67899999986 89999999998 5679999999988643
No 460
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.11 E-value=0.47 Score=39.17 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=30.4
Q ss_pred CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+++.|.| .|.||+.+++.| ...|++|+.++|++..
T Consensus 2 k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~ 37 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRL-LERGWQVTATVRGPQQ 37 (225)
T ss_pred CEEEEeCCCchHHHHHHHHH-HhCCCEEEEEeCCCcc
Confidence 5678887 799999999999 6889999999998754
No 461
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.10 E-value=0.43 Score=42.43 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=32.9
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.|+++.|.|. |-||+.+++.| ..-|.+|++++|+...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L-~~~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWL-LELGAEVYGYSLDPPT 40 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHH-HHCCCEEEEEeCCCcc
Confidence 46789999995 99999999999 6889999999987643
No 462
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.08 E-value=0.35 Score=40.74 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.+.++++.|.|. |.||+.+++.| ..-|++|+.++|+.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l-~~~G~~v~~~~r~~ 42 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRA-AAEGARVVLVDRSE 42 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCch
Confidence 378899999987 77999999998 68899999999974
No 463
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.01 E-value=0.34 Score=41.66 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=28.9
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+|.|.|. |.||+.+++.| ..-|.+|.+.+|++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCcc
Confidence 3667776 99999999998 6789999999998754
No 464
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.98 E-value=0.23 Score=45.79 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=34.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+..+++.|+|+|++|+.+++.| ...|.+|..+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~ 266 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPER 266 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHH
Confidence 4578999999999999999999 8999999999988754
No 465
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=91.97 E-value=2.7 Score=37.04 Aligned_cols=75 Identities=11% Similarity=0.078 Sum_probs=46.8
Q ss_pred cCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023 163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241 (244)
Q Consensus 163 l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv 241 (244)
+.|++|+++|=+ ++..+.+..+ ..||++|..+.|..-...++..+.-....+..+ ..+...+++ +.++.+|+|.
T Consensus 145 l~g~kva~vGD~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~-~a~~~aDvvy 219 (302)
T PRK14805 145 VSKVKLAYVGDGNNVTHSLMYGA-AILGATMTVICPPGHFPDGQIVAEAQELAAKSG---GKLVLTSDI-EAIEGHDAIY 219 (302)
T ss_pred cCCcEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CEEEEEcCH-HHHCCCCEEE
Confidence 789999999974 5678889997 789999999998653222221110000011111 122234565 4689999997
Q ss_pred E
Q 026023 242 T 242 (244)
Q Consensus 242 l 242 (244)
.
T Consensus 220 ~ 220 (302)
T PRK14805 220 T 220 (302)
T ss_pred e
Confidence 5
No 466
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.95 E-value=0.47 Score=40.09 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=30.7
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcC
Q 026023 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDL 197 (244)
Q Consensus 162 ~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~ 197 (244)
.+.||++.|.|.+ .||+.+|+.| ...|++|+..++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l-~~~G~~vi~~~~ 40 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKEL-AEAGADIFFTYW 40 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHH-HHCCCeEEEEec
Confidence 4889999999985 6999999998 689999988753
No 467
>PRK09242 tropinone reductase; Provisional
Probab=91.87 E-value=0.42 Score=40.23 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.||++.|.|. |.||+.+++.| ..-|++|+..+|+..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l-~~~G~~v~~~~r~~~ 44 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREF-LGLGADVLIVARDAD 44 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence 478999999985 79999999998 688999999998754
No 468
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.85 E-value=0.4 Score=40.42 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=31.8
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 026023 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 162 ~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
.+.|+++.|.|.+ .||..+|+.| ..-|++|+..+|+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l-~~~G~~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRL-AAKGIDIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HHcCCcEEEEcCC
Confidence 3688999999985 6999999999 5789999999987
No 469
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.84 E-value=0.55 Score=39.18 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=30.3
Q ss_pred CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+++.|.| .|.||+.+++.| ..-|.+|+..+|+...
T Consensus 2 ~~vlItGas~giG~~~a~~l-~~~G~~Vi~~~r~~~~ 37 (243)
T PRK07102 2 KKILIIGATSDIARACARRY-AAAGARLYLAARDVER 37 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHH-HhcCCEEEEEeCCHHH
Confidence 5788888 699999999999 5789999999998644
No 470
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.83 E-value=0.22 Score=48.23 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=32.6
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
...+-|+|+|++|+.+++.| +..|.++...|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~ 435 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDH 435 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHH
Confidence 46799999999999999999 8999999999998764
No 471
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.82 E-value=0.21 Score=44.55 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=25.6
Q ss_pred EEEEEcCChHHHHHHHHHhc-------cCCcEEEEEcCC
Q 026023 167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIYYDLY 198 (244)
Q Consensus 167 tvgIvG~G~IG~~vA~~la~-------afG~~V~~~~~~ 198 (244)
+|+|+|||+||+.+++.|.+ .++.+|.++..+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 79999999999999999833 278887776443
No 472
>PRK06128 oxidoreductase; Provisional
Probab=91.78 E-value=0.43 Score=41.50 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=31.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
.+.||++.|.|. |.||+.+|+.| ..-|++|+...++.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l-~~~G~~V~i~~~~~ 89 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAF-AREGADIALNYLPE 89 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHH-HHcCCEEEEEeCCc
Confidence 478999999986 88999999999 57899998876654
No 473
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.78 E-value=0.39 Score=42.06 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=46.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHH--HHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240 (244)
Q Consensus 164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V 240 (244)
.|+++.|.|. |.||+.+++.| ..-|.+|.+..|+.....+ ......+. ..+............+++++++..|+|
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLL-LFRGYTINATVRDPKDRKKTDHLLALDGA-KERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHH-HHCCCEEEEEEcCCcchhhHHHHHhccCC-CCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 4789999994 99999999998 7889999888776543111 00000000 000000011233345678888899987
Q ss_pred EEe
Q 026023 241 CTL 243 (244)
Q Consensus 241 vl~ 243 (244)
+.+
T Consensus 82 ih~ 84 (325)
T PLN02989 82 FHT 84 (325)
T ss_pred EEe
Confidence 653
No 474
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.72 E-value=0.52 Score=39.33 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=29.1
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEE-EcCCc
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~-~~~~~ 199 (244)
+.|+++.|.|. |.||+.+++.| ...|.+|+. ..|+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l-~~~g~~v~~~~~r~~ 39 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRL-AEEGYDIAVNYARSR 39 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCH
Confidence 45788999986 78999999999 688999876 45554
No 475
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.71 E-value=0.49 Score=41.57 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.++++.|.|. |.||..+++.| ..-|.+|+..+|+...
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L-~~~G~~V~~~~r~~~~ 42 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKAL-AKRGWHVIMACRNLKK 42 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence 457899999985 88999999999 6789999999987543
No 476
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.69 E-value=0.3 Score=40.26 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|. |.||+.+++.| ..-|.+|+.++|++.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l-~~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWL-AARGARVALIGRGAAP 43 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHH-HHCCCeEEEEeCChHh
Confidence 367899999985 99999999998 5669999999997654
No 477
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=91.69 E-value=0.23 Score=42.13 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=34.0
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.| .|.||+.+++.| ..-|++|+..+++...
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l-~~~G~~v~~~~~~~~~ 45 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKEL-LANGANVVNADIHGGD 45 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCccc
Confidence 47899999998 589999999998 6899999999987643
No 478
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=91.68 E-value=0.43 Score=42.26 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=43.2
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhhCCEE
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVV 240 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sD~V 240 (244)
+|+|+|. |+||..+|-.| ..-| -++..+|..+.. .+..|- .. ......+.. -+++.+.++.||+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l-~~~~~~~elvL~Di~~a~--g~a~DL-----~~-~~~~~~i~~~~~~~~~~~~~~daDiv 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLL-KLQPYVSELSLYDIAGAA--GVAADL-----SH-IPTAASVKGFSGEEGLENALKGADVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHH-HhCCCCcEEEEecCCCCc--EEEchh-----hc-CCcCceEEEecCCCchHHHcCCCCEE
Confidence 5899999 99999999987 4444 479999987621 111110 00 011112221 12568999999999
Q ss_pred EEeC
Q 026023 241 CTLC 244 (244)
Q Consensus 241 vl~~ 244 (244)
+++.
T Consensus 72 vita 75 (312)
T TIGR01772 72 VIPA 75 (312)
T ss_pred EEeC
Confidence 9863
No 479
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=91.67 E-value=0.42 Score=41.67 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.0
Q ss_pred EEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 167 tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
+|.|.|. |-||+.+++.| ..-| +|+++++..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L-~~~g-~V~~~~~~~ 33 (299)
T PRK09987 2 NILLFGKTGQVGWELQRAL-APLG-NLIALDVHS 33 (299)
T ss_pred eEEEECCCCHHHHHHHHHh-hccC-CEEEecccc
Confidence 6889986 99999999998 7888 899999864
No 480
>PRK06349 homoserine dehydrogenase; Provisional
Probab=91.67 E-value=0.53 Score=43.51 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=38.8
Q ss_pred CEEEEEcCChHHHHHHHHHhcc----------CCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 026023 166 QTVGVIGAGRIGSAYARMMVEG----------FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 234 (244)
Q Consensus 166 ~tvgIvG~G~IG~~vA~~la~a----------fG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 234 (244)
-+|||+|+|.||+.+++.| +. .+.+|.+ +++++... .. ..........++++++
T Consensus 4 i~VgiiG~G~VG~~~~~~L-~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll 68 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRIL-EENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELV 68 (426)
T ss_pred EEEEEEeeCHHHHHHHHHH-HHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHh
Confidence 4799999999999998776 32 3566554 45553221 10 0001112346899999
Q ss_pred hh--CCEEEEe
Q 026023 235 RE--ADVVCTL 243 (244)
Q Consensus 235 ~~--sD~Vvl~ 243 (244)
.. .|+|+.+
T Consensus 69 ~d~~iDvVve~ 79 (426)
T PRK06349 69 NDPDIDIVVEL 79 (426)
T ss_pred hCCCCCEEEEC
Confidence 64 6888764
No 481
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.67 E-value=0.49 Score=39.95 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus 1 ~~~vlVtGasg~iG~~la~~l-~~~g~~Vi~~~r~~~~ 37 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRL-ARAGAQLVLAARNETR 37 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 467888887 89999999998 6889999999998643
No 482
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.66 E-value=0.49 Score=39.10 Aligned_cols=38 Identities=32% Similarity=0.400 Sum_probs=32.8
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
+.++++.|.|. |.||+.+++.| ..-|.+|+.++|++..
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l-~~~g~~v~~~~r~~~~ 41 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRL-AADGAKVVIYDSNEEA 41 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChhH
Confidence 45789999985 99999999998 6789999999998644
No 483
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=91.64 E-value=0.55 Score=38.89 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=27.7
Q ss_pred CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (244)
Q Consensus 166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~ 198 (244)
|++.|.| .|.||+.+|+.| ..-|++|+...++
T Consensus 1 k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~ 33 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRL-AKDGYRVAANCGP 33 (242)
T ss_pred CEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCC
Confidence 5778887 799999999999 6889999988873
No 484
>PRK08226 short chain dehydrogenase; Provisional
Probab=91.64 E-value=0.47 Score=40.06 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=32.5
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+.++++.|.| .|.||+.+++.| ..-|.+|+.++|+..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l-~~~G~~Vv~~~r~~~ 41 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVF-ARHGANLILLDISPE 41 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHH
Confidence 6789999997 778999999999 678999999998753
No 485
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.61 E-value=0.31 Score=40.95 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=34.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
++.|+++.|.|. |.||+.+|+.| ...|++|+..+|+...
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~~ 51 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSEDV 51 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 578999999995 99999999999 6789999999997643
No 486
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=91.60 E-value=0.44 Score=42.73 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=25.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHhccC-CcEEEEEcC
Q 026023 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDL 197 (244)
Q Consensus 166 ~tvgIvG~-G~IG~~vA~~la~af-G~~V~~~~~ 197 (244)
.+|+|+|. |.+|+++++.| ... ++++.++.+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L-~~~p~~elv~v~~ 35 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLL-LNHPEVEIVAVTS 35 (343)
T ss_pred eEEEEECCCCHHHHHHHHHH-HcCCCceEEEEEC
Confidence 58999996 99999999998 565 778766544
No 487
>PLN02240 UDP-glucose 4-epimerase
Probab=91.59 E-value=0.62 Score=41.18 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
++.++++.|.|. |.||+.+++.| ..-|.+|+++++..
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L-~~~g~~V~~~~~~~ 39 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQL-LLAGYKVVVIDNLD 39 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCC
Confidence 467899999975 99999999998 67799999998754
No 488
>PLN00198 anthocyanidin reductase; Provisional
Probab=91.54 E-value=0.59 Score=41.24 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=31.0
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (244)
Q Consensus 163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~ 199 (244)
..+++|.|.| .|-||+.+++.| ..-|.+|.++.|..
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L-~~~g~~V~~~~r~~ 43 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLL-LQKGYAVNTTVRDP 43 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHH-HHCCCEEEEEECCC
Confidence 4588999998 899999999998 68899998777664
No 489
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=91.53 E-value=0.48 Score=42.90 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=32.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
..++|+|+|-|..|+.+++.+ +.+|.+|+.++..+..
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~-~~~G~~v~~~~~~~~~ 47 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA 47 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCC
Confidence 456999999999999999996 8999999999988754
No 490
>PRK08703 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.34 Score=40.34 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|. |.||+.+++.| ...|++|++++|+...
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l-~~~g~~V~~~~r~~~~ 42 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAY-AAAGATVILVARHQKK 42 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCChHH
Confidence 478899999985 88999999998 6789999999998743
No 491
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.50 E-value=0.42 Score=40.59 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=43.0
Q ss_pred cCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023 172 GAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL 243 (244)
Q Consensus 172 G~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~ 243 (244)
+-|+|| .+||.+ |-||. +...++|......+.+....| ...--....-+++|+|.+.++|+|+-+
T Consensus 14 ~~gNIG-~vARaM-KNfGl~eL~LV~Pr~~~~eeA~a~A~g-----A~dile~A~i~~tL~eAl~d~~~v~aT 79 (242)
T COG0565 14 HPGNIG-SVARAM-KNFGLSELRLVNPRAGLDEEARALAAG-----ARDILENAKIVDTLEEALADCDLVVAT 79 (242)
T ss_pred CCccHH-HHHHHH-HhCCcceEEEECCCCCCCHHHHHHhcc-----chhhhccCeeecCHHHHhcCCCEEEEe
Confidence 569998 789998 99999 588888887522232221111 111112333458999999999999854
No 492
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.49 E-value=0.52 Score=39.69 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=31.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.||++.|.|. |.||+.+|+.| ..-|++|+...++..
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l-~~~G~~v~~~~~~~~ 42 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAF-LREGAKVAVLYNSAE 42 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCcH
Confidence 367899999985 89999999999 688999988766543
No 493
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.41 E-value=0.3 Score=42.50 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=34.8
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.++.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l-~~~G~~vi~~~r~~~~ 52 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAAL-AAKGAHVVLAVRNLDK 52 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 5689999999985 89999999999 5779999999987643
No 494
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.33 E-value=0.6 Score=39.36 Aligned_cols=39 Identities=33% Similarity=0.301 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.||++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l-~~~G~~vv~~~r~~~~ 43 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAF-AREGAAVALADLDAAL 43 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 378999999985 78999999999 6889999999997543
No 495
>PRK08278 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.71 Score=39.48 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.+.|+++.|.|. |.||+.+|+.| ...|++|+.++|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRA-ARDGANIVIAAKTAE 41 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecccc
Confidence 367899999984 88999999998 688999999998754
No 496
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.29 E-value=0.58 Score=40.17 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=30.0
Q ss_pred CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
+|++.|-|.|.||+.+|+.| . -|.+|+..+|+..
T Consensus 2 ~k~~lItGa~gIG~~la~~l-~-~G~~Vv~~~r~~~ 35 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRV-G-AGKKVLLADYNEE 35 (275)
T ss_pred CCEEEEECCChHHHHHHHHH-h-CCCEEEEEeCCHH
Confidence 57889999999999999998 4 5999999998754
No 497
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.24 E-value=0.65 Score=39.36 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (244)
Q Consensus 162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~ 201 (244)
.+.|+++.|.|. |.||+.+++.| ..-|++|+..+++...
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l-~~~G~~vv~~~~~~~~ 46 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAY-AKAGATIVFNDINQEL 46 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 478899999986 68999999999 6899999999887643
No 498
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=91.10 E-value=0.73 Score=38.80 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=33.0
Q ss_pred cccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 161 ~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
.++.||++.|.|.. .||+++|+.| ...|++|++.++...
T Consensus 6 ~~l~~k~~lItG~~~gIG~a~a~~l-~~~G~~vv~~~~~~~ 45 (253)
T PRK08993 6 FSLEGKVAVVTGCDTGLGQGMALGL-AEAGCDIVGINIVEP 45 (253)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEecCcch
Confidence 35889999999865 7999999999 688999999987653
No 499
>PRK09135 pteridine reductase; Provisional
Probab=91.07 E-value=0.76 Score=38.12 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=31.7
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~ 200 (244)
..++++.|.|. |.||+.+++.| ..-|++|+.++|+..
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l-~~~g~~v~~~~r~~~ 41 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTL-HAAGYRVAIHYHRSA 41 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCH
Confidence 45688999985 89999999999 678999999998753
No 500
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=91.06 E-value=0.56 Score=41.42 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=45.6
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023 163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (244)
Q Consensus 163 l~g~tvgIvG~-G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~ 239 (244)
+.|+++.|.|. |.||+.+++.| ..-| .+|..++|+.... ......+.. ..............++.++++..|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L-~~~g~~~~V~~~~r~~~~~-~~~~~~~~~--~~~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRL-LENYNPKKIIIYSRDELKQ-WEMQQKFPA--PCLRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH-HHhCCCcEEEEEcCChhHH-HHHHHHhCC--CcEEEEEccCCCHHHHHHHHhcCCE
Confidence 46889999985 99999999998 4554 7899998865431 111110000 0000001122333467788888998
Q ss_pred EEE
Q 026023 240 VCT 242 (244)
Q Consensus 240 Vvl 242 (244)
|+-
T Consensus 78 Vih 80 (324)
T TIGR03589 78 VVH 80 (324)
T ss_pred EEE
Confidence 864
Done!