Query 026024
Match_columns 244
No_of_seqs 325 out of 1341
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 100.0 1E-40 2.3E-45 280.4 23.4 231 6-243 1-231 (233)
2 PLN03042 Lactoylglutathione ly 100.0 1.3E-28 2.8E-33 202.5 22.1 179 64-242 4-182 (185)
3 KOG2944 Glyoxalase [Carbohydra 100.0 3.9E-29 8.5E-34 194.5 11.7 166 69-235 4-169 (170)
4 TIGR00068 glyox_I lactoylgluta 99.9 3.7E-20 8E-25 147.2 18.2 135 80-239 10-146 (150)
5 cd08358 Glo_EDI_BRP_like_21 Th 99.9 4.6E-20 9.9E-25 143.0 16.3 115 86-233 1-126 (127)
6 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 9.2E-20 2E-24 142.9 16.4 128 86-234 2-141 (142)
7 cd07233 Glyoxalase_I Glyoxalas 99.8 2.1E-19 4.6E-24 136.3 16.4 121 88-232 1-121 (121)
8 PRK10291 glyoxalase I; Provisi 99.8 2E-19 4.4E-24 139.0 16.3 121 92-237 1-123 (129)
9 PRK11478 putative lyase; Provi 99.8 3.1E-19 6.8E-24 137.2 16.1 124 85-234 4-129 (129)
10 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.8E-19 6.2E-24 136.0 14.8 121 87-232 1-125 (125)
11 TIGR03645 glyox_marine lactoyl 99.8 4.3E-19 9.2E-24 143.2 16.4 128 86-236 3-153 (162)
12 cd08342 HPPD_N_like N-terminal 99.8 3.7E-19 8E-24 139.1 15.0 128 88-240 1-129 (136)
13 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 1.7E-18 3.8E-23 131.3 15.8 122 86-233 2-125 (125)
14 cd07243 2_3_CTD_C C-terminal d 99.8 8.4E-18 1.8E-22 132.9 16.8 116 85-234 4-125 (143)
15 TIGR03081 metmalonyl_epim meth 99.8 1.4E-18 3.1E-23 132.9 11.2 124 87-233 1-128 (128)
16 PLN02300 lactoylglutathione ly 99.8 1.3E-17 2.7E-22 146.3 18.0 129 83-236 20-150 (286)
17 cd07257 THT_oxygenase_C The C- 99.8 3.1E-18 6.6E-23 136.9 12.7 120 87-235 1-126 (153)
18 cd09011 Glo_EDI_BRP_like_23 Th 99.8 1.5E-17 3.2E-22 126.7 14.3 117 86-234 1-119 (120)
19 cd07237 BphC1-RGP6_C_like C-te 99.8 2.1E-17 4.5E-22 132.2 15.2 120 83-235 5-132 (154)
20 cd07263 Glo_EDI_BRP_like_16 Th 99.8 4.2E-17 9E-22 122.5 15.0 119 90-233 1-119 (119)
21 cd07265 2_3_CTD_N N-terminal d 99.8 5.1E-17 1.1E-21 124.0 15.4 114 85-235 2-120 (122)
22 cd08351 ChaP_like ChaP, an enz 99.8 5.6E-17 1.2E-21 124.3 15.3 111 85-235 2-122 (123)
23 cd07247 SgaA_N_like N-terminal 99.8 6.6E-17 1.4E-21 121.6 15.3 113 88-233 1-114 (114)
24 cd07256 HPCD_C_class_II C-term 99.7 8.5E-17 1.9E-21 129.5 16.2 116 86-235 2-124 (161)
25 cd07255 Glo_EDI_BRP_like_12 Th 99.7 1.5E-16 3.2E-21 121.5 16.3 118 86-236 1-121 (125)
26 cd08347 PcpA_C_like C-terminal 99.7 9.3E-17 2E-21 129.0 15.5 118 88-236 2-122 (157)
27 cd08360 MhqB_like_C C-terminal 99.7 1.5E-16 3.3E-21 123.9 15.9 115 86-235 2-121 (134)
28 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 6.1E-17 1.3E-21 120.2 12.8 114 88-231 1-114 (114)
29 cd08346 PcpA_N_like N-terminal 99.7 1.1E-16 2.3E-21 121.8 14.1 122 87-232 1-126 (126)
30 cd07264 Glo_EDI_BRP_like_15 Th 99.7 1.9E-16 4.1E-21 120.7 15.2 122 88-234 1-125 (125)
31 cd09013 BphC-JF8_N_like N-term 99.7 1.8E-16 3.9E-21 120.9 14.9 113 85-235 4-119 (121)
32 PRK04101 fosfomycin resistance 99.7 1.9E-16 4.2E-21 124.2 15.4 115 86-235 3-120 (139)
33 PF00903 Glyoxalase: Glyoxalas 99.7 2E-17 4.4E-22 125.6 8.9 120 87-231 1-128 (128)
34 TIGR03211 catechol_2_3 catecho 99.7 2.7E-16 5.9E-21 138.6 17.2 153 47-232 103-263 (303)
35 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 2.7E-16 5.9E-21 119.2 14.7 118 86-233 2-124 (125)
36 cd08343 ED_TypeI_classII_C C-t 99.7 6.1E-16 1.3E-20 119.9 16.6 114 89-236 1-119 (131)
37 cd07252 BphC1-RGP6_N_like N-te 99.7 2E-16 4.4E-21 120.7 13.5 109 87-234 2-117 (120)
38 cd08355 Glo_EDI_BRP_like_14 Th 99.7 9.8E-16 2.1E-20 116.8 17.2 118 91-233 3-121 (122)
39 cd08364 FosX FosX, a fosfomyci 99.7 3.6E-16 7.8E-21 121.5 15.0 115 86-234 3-122 (131)
40 PLN02300 lactoylglutathione ly 99.7 2.9E-16 6.3E-21 137.7 16.2 129 86-239 153-283 (286)
41 TIGR03213 23dbph12diox 2,3-dih 99.7 3.6E-16 7.8E-21 136.9 16.7 153 45-233 101-262 (286)
42 cd07249 MMCE Methylmalonyl-CoA 99.7 1.2E-16 2.6E-21 122.0 11.9 123 88-233 1-128 (128)
43 cd09014 BphC-JF8_C_like C-term 99.7 4.9E-16 1.1E-20 125.8 16.0 119 85-234 4-127 (166)
44 cd07240 ED_TypeI_classII_N N-t 99.7 5.2E-16 1.1E-20 116.9 14.8 110 86-234 1-114 (117)
45 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 5.3E-16 1.2E-20 116.5 14.8 108 90-234 3-111 (112)
46 cd08354 Glo_EDI_BRP_like_13 Th 99.7 6.2E-16 1.4E-20 117.3 14.9 120 88-234 1-122 (122)
47 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 7E-16 1.5E-20 118.3 15.3 118 87-234 1-128 (128)
48 cd08361 PpCmtC_N N-terminal do 99.7 6.3E-16 1.4E-20 118.9 14.6 111 84-235 3-120 (124)
49 cd08363 FosB FosB, a fosfomyci 99.7 2.8E-16 6.2E-21 122.1 12.7 114 88-236 1-117 (131)
50 cd08359 Glo_EDI_BRP_like_22 Th 99.7 9.1E-16 2E-20 116.2 14.9 115 90-233 4-119 (119)
51 cd08348 BphC2-C3-RGP6_C_like T 99.7 1.3E-15 2.8E-20 118.0 15.6 119 87-236 1-122 (134)
52 cd07239 BphC5-RK37_C_like C-te 99.7 1.2E-15 2.5E-20 120.8 15.6 112 86-236 3-119 (144)
53 cd07267 THT_Oxygenase_N N-term 99.7 1.7E-15 3.8E-20 114.3 14.9 109 86-234 2-110 (113)
54 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 3.4E-15 7.5E-20 113.0 16.4 116 91-233 5-121 (122)
55 cd09012 Glo_EDI_BRP_like_24 Th 99.7 9.6E-16 2.1E-20 117.4 13.2 120 88-233 1-123 (124)
56 cd07244 FosA FosA, a Fosfomyci 99.7 1.1E-15 2.3E-20 116.8 12.8 109 87-235 1-111 (121)
57 PRK06724 hypothetical protein; 99.7 1.9E-15 4.1E-20 117.4 14.3 111 85-236 5-125 (128)
58 cd08362 BphC5-RrK37_N_like N-t 99.7 2.4E-15 5.2E-20 114.0 14.0 111 86-235 2-118 (120)
59 cd07258 PpCmtC_C C-terminal do 99.7 2.7E-15 5.9E-20 118.4 14.0 110 89-235 1-115 (141)
60 cd07266 HPCD_N_class_II N-term 99.7 2.9E-15 6.2E-20 113.9 13.7 112 85-234 2-118 (121)
61 cd08345 Fosfomycin_RP Fosfomyc 99.7 1.6E-15 3.5E-20 113.7 11.9 107 90-233 1-110 (113)
62 cd07261 Glo_EDI_BRP_like_11 Th 99.7 3.8E-15 8.2E-20 112.1 14.0 109 91-232 2-113 (114)
63 PF12681 Glyoxalase_2: Glyoxal 99.6 1.8E-15 4E-20 112.4 11.4 107 93-232 1-108 (108)
64 cd07235 MRD Mitomycin C resist 99.6 2.9E-15 6.3E-20 114.1 12.4 116 88-232 1-121 (122)
65 cd08344 MhqB_like_N N-terminal 99.6 5.8E-15 1.3E-19 111.2 13.7 106 87-234 2-109 (112)
66 cd08357 Glo_EDI_BRP_like_18 Th 99.6 5.1E-15 1.1E-19 112.7 13.4 116 90-233 2-124 (125)
67 cd07254 Glo_EDI_BRP_like_20 Th 99.6 9E-15 1.9E-19 111.1 14.5 109 89-234 3-117 (120)
68 cd08349 BLMA_like Bleomycin bi 99.6 1.1E-14 2.3E-19 108.7 14.6 108 92-233 3-112 (112)
69 cd07262 Glo_EDI_BRP_like_19 Th 99.6 7.5E-15 1.6E-19 111.9 14.0 112 88-232 1-122 (123)
70 TIGR02295 HpaD 3,4-dihydroxyph 99.6 9.1E-15 2E-19 128.2 16.2 152 46-235 99-257 (294)
71 cd08350 BLMT_like BLMT, a bleo 99.6 1E-14 2.2E-19 111.1 13.6 107 90-234 5-119 (120)
72 cd06587 Glo_EDI_BRP_like This 99.6 1.2E-14 2.5E-19 106.6 13.2 111 90-231 1-112 (112)
73 TIGR03211 catechol_2_3 catecho 99.6 2.9E-14 6.2E-19 125.7 15.3 113 85-236 2-120 (303)
74 cd08356 Glo_EDI_BRP_like_17 Th 99.6 2.4E-14 5.2E-19 108.4 11.9 103 91-233 5-113 (113)
75 cd07251 Glo_EDI_BRP_like_10 Th 99.6 6.1E-14 1.3E-18 106.0 13.4 115 91-233 2-120 (121)
76 TIGR02295 HpaD 3,4-dihydroxyph 99.6 8.1E-14 1.8E-18 122.2 15.3 112 85-235 2-116 (294)
77 KOG2943 Predicted glyoxalase [ 99.5 4.3E-14 9.4E-19 117.4 10.2 120 84-235 14-144 (299)
78 TIGR03213 23dbph12diox 2,3-dih 99.5 1.7E-13 3.7E-18 119.9 14.2 110 86-234 2-118 (286)
79 COG3324 Predicted enzyme relat 99.5 1.3E-12 2.7E-17 100.5 14.3 119 85-235 7-126 (127)
80 PF13669 Glyoxalase_4: Glyoxal 99.5 1.9E-13 4.2E-18 102.8 9.7 97 89-210 1-97 (109)
81 COG2514 Predicted ring-cleavag 99.4 2.2E-12 4.8E-17 109.6 13.7 121 82-236 5-128 (265)
82 cd07250 HPPD_C_like C-terminal 99.4 5.2E-12 1.1E-16 104.6 12.5 104 86-210 2-112 (191)
83 COG3565 Predicted dioxygenase 99.3 5E-11 1.1E-15 88.6 10.9 129 86-241 3-136 (138)
84 COG0346 GloA Lactoylglutathion 99.3 2.4E-11 5.2E-16 91.4 9.1 131 86-233 1-138 (138)
85 TIGR01263 4HPPD 4-hydroxypheny 99.1 8.7E-10 1.9E-14 99.6 13.2 105 85-210 156-267 (353)
86 COG3607 Predicted lactoylgluta 99.1 6.9E-10 1.5E-14 83.8 10.0 122 87-235 3-128 (133)
87 cd06588 PhnB_like Escherichia 99.1 4E-09 8.7E-14 81.4 14.7 110 91-231 3-127 (128)
88 TIGR01263 4HPPD 4-hydroxypheny 99.1 2.9E-09 6.3E-14 96.2 15.3 126 86-235 1-128 (353)
89 KOG2943 Predicted glyoxalase [ 99.1 4.9E-10 1.1E-14 93.5 8.3 120 88-240 150-276 (299)
90 COG2764 PhnB Uncharacterized p 99.1 1.5E-08 3.1E-13 79.2 15.3 118 91-236 4-133 (136)
91 COG2514 Predicted ring-cleavag 99.0 1.2E-09 2.5E-14 93.2 9.1 138 43-232 127-264 (265)
92 PLN02875 4-hydroxyphenylpyruva 98.9 4.5E-09 9.8E-14 95.7 7.9 105 85-210 178-295 (398)
93 PRK01037 trmD tRNA (guanine-N( 98.7 7.2E-08 1.6E-12 85.5 9.6 106 86-234 246-354 (357)
94 PRK10148 hypothetical protein; 98.3 5.9E-05 1.3E-09 59.9 15.8 51 183-234 87-141 (147)
95 PF13468 Glyoxalase_3: Glyoxal 98.3 3.8E-06 8.2E-11 68.4 8.1 125 88-234 1-137 (175)
96 PF14506 CppA_N: CppA N-termin 98.2 3.7E-05 8.1E-10 58.1 12.1 119 89-240 2-120 (125)
97 COG3185 4-hydroxyphenylpyruvat 98.2 4.1E-06 8.8E-11 74.1 7.3 106 84-211 164-275 (363)
98 PLN02875 4-hydroxyphenylpyruva 98.0 0.00014 3.1E-09 66.5 13.4 133 88-239 1-156 (398)
99 KOG0638 4-hydroxyphenylpyruvat 97.9 4.4E-05 9.5E-10 66.6 7.2 130 84-237 14-151 (381)
100 PF14696 Glyoxalase_5: Hydroxy 97.7 0.0017 3.7E-08 51.0 12.6 124 84-237 6-129 (139)
101 KOG0638 4-hydroxyphenylpyruvat 96.8 0.0012 2.7E-08 57.8 3.6 135 83-236 174-339 (381)
102 PF06983 3-dmu-9_3-mt: 3-demet 96.7 0.085 1.8E-06 40.0 12.9 41 183-232 73-116 (116)
103 PF13669 Glyoxalase_4: Glyoxal 96.0 0.02 4.3E-07 42.5 5.7 55 183-237 1-58 (109)
104 PF14507 CppA_C: CppA C-termin 95.9 0.038 8.3E-07 40.8 6.7 93 85-229 3-98 (101)
105 PF15067 FAM124: FAM124 family 95.5 0.16 3.4E-06 43.0 9.6 108 85-231 126-235 (236)
106 COG3185 4-hydroxyphenylpyruvat 95.2 0.41 8.9E-06 42.9 11.7 113 85-226 20-142 (363)
107 TIGR03645 glyox_marine lactoyl 93.7 0.44 9.5E-06 38.0 8.0 57 180-236 3-79 (162)
108 cd08353 Glo_EDI_BRP_like_7 Thi 92.2 1.1 2.4E-05 34.2 8.1 47 85-132 85-131 (142)
109 cd08352 Glo_EDI_BRP_like_1 Thi 92.2 1.2 2.5E-05 32.6 8.0 55 181-235 3-59 (125)
110 cd08346 PcpA_N_like N-terminal 91.8 1.1 2.4E-05 32.8 7.6 56 181-236 1-62 (126)
111 PF13468 Glyoxalase_3: Glyoxal 91.7 0.17 3.7E-06 40.8 3.2 51 182-235 1-55 (175)
112 cd07242 Glo_EDI_BRP_like_6 Thi 91.1 1.3 2.7E-05 33.0 7.3 53 181-237 1-57 (128)
113 KOG2944 Glyoxalase [Carbohydra 90.1 1.3 2.8E-05 35.4 6.6 49 82-133 110-159 (170)
114 cd07249 MMCE Methylmalonyl-CoA 88.7 2.1 4.5E-05 31.5 6.7 53 183-236 2-57 (128)
115 cd06587 Glo_EDI_BRP_like This 88.5 2.5 5.4E-05 29.5 6.8 52 184-237 1-53 (112)
116 PLN02367 lactoylglutathione ly 87.9 3 6.5E-05 35.6 7.7 55 86-160 168-222 (233)
117 cd07245 Glo_EDI_BRP_like_9 Thi 87.7 2.3 5E-05 30.1 6.2 53 183-237 2-55 (114)
118 cd08342 HPPD_N_like N-terminal 87.4 3.8 8.2E-05 31.2 7.6 57 86-161 68-124 (136)
119 cd08347 PcpA_C_like C-terminal 87.4 3.3 7.2E-05 32.7 7.4 51 181-235 1-54 (157)
120 cd07263 Glo_EDI_BRP_like_16 Th 87.3 3.2 7E-05 29.8 6.9 52 184-235 1-55 (119)
121 cd07233 Glyoxalase_I Glyoxalas 86.5 3.8 8.3E-05 29.8 7.0 53 183-235 2-59 (121)
122 cd07255 Glo_EDI_BRP_like_12 Th 85.8 5.2 0.00011 29.4 7.4 50 181-235 2-53 (125)
123 cd07241 Glo_EDI_BRP_like_3 Thi 85.7 5.6 0.00012 29.0 7.5 55 182-236 2-58 (125)
124 PRK11478 putative lyase; Provi 85.1 5.8 0.00012 29.4 7.5 29 86-115 74-102 (129)
125 cd07237 BphC1-RGP6_C_like C-te 84.8 5.6 0.00012 31.2 7.5 55 180-234 8-68 (154)
126 PRK10291 glyoxalase I; Provisi 83.9 5.5 0.00012 29.8 6.9 56 86-160 64-120 (129)
127 PLN03042 Lactoylglutathione ly 83.7 5.8 0.00013 32.5 7.3 55 86-160 120-174 (185)
128 PF06185 YecM: YecM protein; 83.6 12 0.00027 30.7 9.0 32 83-114 30-61 (185)
129 cd08348 BphC2-C3-RGP6_C_like T 82.9 8.8 0.00019 28.7 7.7 52 182-236 2-56 (134)
130 PRK11700 hypothetical protein; 82.7 9 0.0002 31.5 7.9 30 83-112 35-64 (187)
131 cd07235 MRD Mitomycin C resist 82.6 6.2 0.00013 28.9 6.7 48 183-233 2-49 (122)
132 PF00903 Glyoxalase: Glyoxalas 82.6 12 0.00026 27.0 8.2 53 181-234 1-57 (128)
133 cd08360 MhqB_like_C C-terminal 82.4 9.1 0.0002 28.9 7.6 51 181-235 3-57 (134)
134 PF13670 PepSY_2: Peptidase pr 82.0 6 0.00013 27.7 6.0 51 191-241 30-80 (83)
135 cd08344 MhqB_like_N N-terminal 81.4 10 0.00022 27.5 7.4 29 181-209 2-30 (112)
136 cd07250 HPPD_C_like C-terminal 81.1 6.8 0.00015 32.1 6.8 56 181-236 3-65 (191)
137 TIGR03081 metmalonyl_epim meth 80.2 7 0.00015 28.7 6.2 52 182-234 2-55 (128)
138 cd07253 Glo_EDI_BRP_like_2 Thi 79.2 10 0.00022 27.4 6.8 50 181-234 3-53 (125)
139 cd07268 Glo_EDI_BRP_like_4 Thi 77.9 28 0.00061 27.6 8.9 25 88-112 2-26 (149)
140 COG3865 Uncharacterized protei 77.3 34 0.00073 27.0 12.6 42 184-234 80-124 (151)
141 cd07240 ED_TypeI_classII_N N-t 77.0 16 0.00035 26.2 7.2 49 181-234 2-53 (117)
142 PF12681 Glyoxalase_2: Glyoxal 76.2 20 0.00044 25.2 7.5 31 86-117 55-85 (108)
143 PRK04101 fosfomycin resistance 75.9 19 0.00041 27.3 7.7 48 181-234 4-52 (139)
144 cd07252 BphC1-RGP6_N_like N-te 75.4 14 0.00031 27.1 6.7 49 181-233 2-52 (120)
145 TIGR00068 glyox_I lactoylgluta 74.6 17 0.00037 28.0 7.2 56 86-160 85-141 (150)
146 cd09013 BphC-JF8_N_like N-term 74.0 22 0.00049 25.9 7.4 29 181-209 6-35 (121)
147 cd08364 FosX FosX, a fosfomyci 73.6 21 0.00045 26.8 7.3 54 181-235 4-60 (131)
148 cd07256 HPCD_C_class_II C-term 73.1 24 0.00051 27.7 7.7 29 180-208 2-31 (161)
149 cd08358 Glo_EDI_BRP_like_21 Th 73.1 26 0.00055 26.9 7.6 30 181-210 2-32 (127)
150 cd08359 Glo_EDI_BRP_like_22 Th 71.5 20 0.00044 25.9 6.6 26 90-116 69-94 (119)
151 cd08351 ChaP_like ChaP, an enz 70.9 22 0.00047 26.2 6.7 49 181-234 4-53 (123)
152 cd08343 ED_TypeI_classII_C C-t 70.6 25 0.00054 26.2 7.1 52 183-234 1-54 (131)
153 cd07267 THT_Oxygenase_N N-term 69.7 30 0.00066 25.0 7.2 29 87-116 57-85 (113)
154 cd07265 2_3_CTD_N N-terminal d 69.7 28 0.00061 25.4 7.1 29 181-209 4-33 (122)
155 cd07266 HPCD_N_class_II N-term 67.9 30 0.00065 25.1 6.9 30 181-210 4-34 (121)
156 cd07238 Glo_EDI_BRP_like_5 Thi 67.1 39 0.00085 24.1 7.3 28 88-116 58-85 (112)
157 cd07247 SgaA_N_like N-terminal 66.9 43 0.00092 23.9 7.5 29 88-117 62-90 (114)
158 cd04882 ACT_Bt0572_2 C-termina 65.5 13 0.00029 23.9 4.0 26 181-206 39-64 (65)
159 cd04895 ACT_ACR_1 ACT domain-c 65.4 31 0.00067 23.7 5.9 39 192-230 15-56 (72)
160 cd07257 THT_oxygenase_C The C- 64.8 35 0.00075 26.5 7.0 31 86-116 66-98 (153)
161 cd08362 BphC5-RrK37_N_like N-t 64.6 34 0.00074 24.6 6.6 29 181-209 3-32 (120)
162 cd07258 PpCmtC_C C-terminal do 64.3 44 0.00096 25.7 7.5 31 85-115 54-86 (141)
163 cd07262 Glo_EDI_BRP_like_19 Th 64.1 33 0.00073 24.9 6.5 48 183-234 2-54 (123)
164 cd09014 BphC-JF8_C_like C-term 62.1 36 0.00079 26.9 6.8 29 181-209 6-35 (166)
165 cd07264 Glo_EDI_BRP_like_15 Th 60.2 47 0.001 24.0 6.8 26 90-116 74-99 (125)
166 cd08363 FosB FosB, a fosfomyci 59.4 38 0.00082 25.4 6.2 46 183-234 2-48 (131)
167 cd08361 PpCmtC_N N-terminal do 59.1 50 0.0011 24.4 6.7 48 181-233 6-55 (124)
168 cd07243 2_3_CTD_C C-terminal d 58.5 52 0.0011 25.2 6.9 30 86-115 66-97 (143)
169 cd09012 Glo_EDI_BRP_like_24 Th 58.3 51 0.0011 24.1 6.6 49 183-234 2-50 (124)
170 PRK06724 hypothetical protein; 57.6 71 0.0015 24.1 7.4 29 87-115 63-93 (128)
171 cd07239 BphC5-RK37_C_like C-te 57.4 45 0.00098 25.6 6.4 49 181-233 4-54 (144)
172 cd08349 BLMA_like Bleomycin bi 55.6 58 0.0013 22.8 6.4 24 88-112 59-82 (112)
173 COG4747 ACT domain-containing 54.8 95 0.0021 23.8 7.6 26 184-209 111-136 (142)
174 COG0346 GloA Lactoylglutathion 54.0 22 0.00047 25.3 3.9 30 181-210 2-32 (138)
175 cd09011 Glo_EDI_BRP_like_23 Th 53.5 83 0.0018 22.7 7.2 27 89-115 66-92 (120)
176 COG3102 Uncharacterized protei 53.4 70 0.0015 26.0 6.7 28 84-111 36-63 (185)
177 cd07246 Glo_EDI_BRP_like_8 Thi 52.4 83 0.0018 22.4 7.6 30 87-117 68-97 (122)
178 cd04883 ACT_AcuB C-terminal AC 52.0 33 0.00071 22.6 4.3 28 182-209 42-71 (72)
179 cd07251 Glo_EDI_BRP_like_10 Th 51.3 53 0.0011 23.5 5.7 46 185-235 2-48 (121)
180 cd08345 Fosfomycin_RP Fosfomyc 50.3 70 0.0015 22.6 6.2 27 184-210 1-28 (113)
181 cd07244 FosA FosA, a Fosfomyci 49.6 35 0.00076 24.9 4.5 30 181-210 1-31 (121)
182 cd04897 ACT_ACR_3 ACT domain-c 44.1 1.1E+02 0.0023 21.3 5.9 39 192-230 15-56 (75)
183 cd07254 Glo_EDI_BRP_like_20 Th 39.9 1.4E+02 0.003 21.4 6.8 31 86-116 57-89 (120)
184 PF02208 Sorb: Sorbin homologo 38.1 7.8 0.00017 24.2 -0.6 22 88-109 12-33 (47)
185 cd08357 Glo_EDI_BRP_like_18 Th 37.9 60 0.0013 23.4 4.1 26 184-209 2-28 (125)
186 cd08354 Glo_EDI_BRP_like_13 Th 37.7 1.5E+02 0.0032 21.1 7.6 48 183-234 2-50 (122)
187 cd04906 ACT_ThrD-I_1 First of 37.5 64 0.0014 22.5 4.0 30 181-210 40-73 (85)
188 PF07063 DUF1338: Domain of un 36.5 36 0.00077 30.3 3.0 42 89-131 36-82 (302)
189 PRK13490 chemoreceptor glutami 36.4 73 0.0016 25.6 4.6 39 190-228 112-150 (162)
190 PRK06704 RNA polymerase factor 36.4 31 0.00067 29.3 2.6 43 186-231 183-225 (228)
191 PF03975 CheD: CheD chemotacti 36.3 62 0.0013 24.2 3.9 39 190-228 64-102 (114)
192 PRK13498 chemoreceptor glutami 36.0 75 0.0016 25.6 4.6 40 188-227 113-152 (167)
193 KOG4657 Uncharacterized conser 35.2 29 0.00063 29.4 2.1 20 97-116 146-165 (246)
194 PRK13495 chemoreceptor glutami 35.2 80 0.0017 25.3 4.6 39 190-228 105-143 (159)
195 cd04908 ACT_Bt0572_1 N-termina 33.0 88 0.0019 20.3 4.0 24 184-207 42-65 (66)
196 PRK13497 chemoreceptor glutami 32.8 91 0.002 25.6 4.7 39 190-228 112-150 (184)
197 PRK13494 chemoreceptor glutami 31.4 1E+02 0.0022 24.8 4.6 39 190-228 114-152 (163)
198 PRK13493 chemoreceptor glutami 31.3 94 0.002 26.2 4.6 38 190-227 139-176 (213)
199 COG1225 Bcp Peroxiredoxin [Pos 29.9 2.2E+02 0.0047 22.8 6.3 53 181-233 64-137 (157)
200 PRK13488 chemoreceptor glutami 29.8 1.1E+02 0.0024 24.4 4.6 39 189-227 106-144 (157)
201 PRK13491 chemoreceptor glutami 29.6 1.1E+02 0.0024 25.5 4.6 39 190-228 115-153 (199)
202 PF09142 TruB_C: tRNA Pseudour 28.4 1E+02 0.0023 19.9 3.5 41 191-235 5-45 (56)
203 PRK13487 chemoreceptor glutami 27.3 1.2E+02 0.0026 25.3 4.6 39 189-227 126-164 (201)
204 COG1871 CheD Chemotaxis protei 27.3 1.5E+02 0.0033 23.9 4.9 39 189-227 113-151 (164)
205 PRK13489 chemoreceptor glutami 26.5 1.3E+02 0.0028 25.8 4.6 38 190-227 125-162 (233)
206 PF07494 Reg_prop: Two compone 26.3 75 0.0016 16.6 2.1 12 219-230 9-20 (24)
207 PRK09437 bcp thioredoxin-depen 26.2 2.5E+02 0.0055 21.3 6.1 53 181-233 64-137 (154)
208 PF13176 TPR_7: Tetratricopept 26.0 50 0.0011 18.8 1.5 18 94-111 11-28 (36)
209 COG5397 Uncharacterized conser 23.9 73 0.0016 28.1 2.7 51 184-235 160-212 (349)
210 PHA00450 host dGTPase inhibito 23.9 1.7E+02 0.0037 20.7 4.0 43 191-233 11-57 (85)
211 cd08355 Glo_EDI_BRP_like_14 Th 23.9 2.8E+02 0.006 19.8 7.1 28 88-116 69-96 (122)
212 PTZ00056 glutathione peroxidas 23.8 3.9E+02 0.0085 21.8 7.1 26 181-206 72-105 (199)
213 TIGR00318 cyaB adenylyl cyclas 23.6 86 0.0019 25.2 3.0 24 185-208 6-29 (174)
214 PF06923 GutM: Glucitol operon 23.3 79 0.0017 23.6 2.5 47 187-234 21-70 (109)
215 PF08445 FR47: FR47-like prote 21.8 2E+02 0.0043 20.0 4.3 23 93-116 60-82 (86)
216 PF02952 Fucose_iso_C: L-fucos 20.7 1E+02 0.0022 23.7 2.8 27 88-114 113-139 (142)
217 cd04885 ACT_ThrD-I Tandem C-te 20.7 1.6E+02 0.0034 19.4 3.4 27 181-207 38-67 (68)
218 cd04886 ACT_ThrD-II-like C-ter 20.5 2.1E+02 0.0045 18.1 4.0 24 184-207 46-72 (73)
219 COG1724 Predicted RNA binding 20.2 2.9E+02 0.0063 18.7 5.2 36 192-232 9-44 (66)
No 1
>PLN02367 lactoylglutathione lyase
Probab=100.00 E-value=1e-40 Score=280.37 Aligned_cols=231 Identities=74% Similarity=1.162 Sum_probs=196.1
Q ss_pred ceecccccccccceeeccCCCCCCcCCCCcccccccccccccccccchhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 026024 6 SISCSTSLSRLSIFSRLTSSTRPLFLSPSSLPFFSSTKTTTSWFKASNRFRLLSMASSEPKESPANNPGLHTARDEATNG 85 (244)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (244)
+|+++|++||||+++++. ++ +++.|+....+.+ .++..|.++|+|..+|+ +.|+......+|.+..+++.|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~ 73 (233)
T PLN02367 1 SYSIATAISRLSPLILIV-KP-YSSGSSFITCFCN----STRKPKRFDRLRVFSMA-SEPKESPANNPGLSTSPDEATKG 73 (233)
T ss_pred CchhhhhhhhccceEEec-CC-cccCCcceeeccc----cccccccccceeeeccc-cCCccCcccCcccccCCCCCCCC
Confidence 578899999999999998 66 5555555333333 34556888888888887 67888888899999999999999
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
+.++|++|+|+|++++++||+++|||++..+.+.+++++.++|+++++....+.+..++..|.+.+...|||+++++.+.
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 99999999999999999999999999999999888888999999986655556566678899998888999999888765
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCCCCCCCCC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGKIGGS 243 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~~~~~~~~ 243 (244)
++.+..|..|+..+.|++||+|.|+|+++++++|+++|+++...|..+.+.+++||+|||||+|||+|...+.+++.+
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~~~~~~~~~ 231 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLKTIGTTTVN 231 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecccccccccc
Confidence 444555888887778999999999999999999999999999988777766789999999999999999988876643
No 2
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.97 E-value=1.3e-28 Score=202.55 Aligned_cols=179 Identities=83% Similarity=1.395 Sum_probs=143.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCcc
Q 026024 64 EPKESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVD 143 (244)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (244)
..+.++...+|.+.+++..|.+++++|++|+|+|+++|++||+++|||++..+...++..+.++|+++++....|.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~ 83 (185)
T PLN03042 4 ASKESAANNPGLCGNPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPE 83 (185)
T ss_pred CCcCCcccCcccccCCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhh
Confidence 34555666888999999999999999999999999999999999999999988777777788999987543333444445
Q ss_pred ceeeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEEC
Q 026024 144 RTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKD 223 (244)
Q Consensus 144 ~~~~~~~~~~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~D 223 (244)
...|.+.+...|||+++.+....+....+..++..+.|+.||+|.|+|+++++++|+++|+++...+..+...+++||+|
T Consensus 84 ~~~~l~~~~~~lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~D 163 (185)
T PLN03042 84 RTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKD 163 (185)
T ss_pred cccccccCCCEEEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEEC
Confidence 67788888899999986554322211124444433458999999999999999999999999998776554456788999
Q ss_pred CCCCEEEEEecCCCCCCCC
Q 026024 224 PDDYWIEIFDLKTIGKIGG 242 (244)
Q Consensus 224 PdG~~IEi~e~~~~~~~~~ 242 (244)
||||+|||++.++++.+++
T Consensus 164 PdG~~IEl~e~~~~~~~~~ 182 (185)
T PLN03042 164 PDGYWIEIFDLKRIGGITA 182 (185)
T ss_pred CCCCEEEEEECCCchhhcc
Confidence 9999999999999998875
No 3
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=194.48 Aligned_cols=166 Identities=54% Similarity=0.887 Sum_probs=149.2
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeee
Q 026024 69 PANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWT 148 (244)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (244)
++.+.+.....+..+.++.++|++++|+|+.+++.||++++|+.+.....+++..|..+|++++....+|.....+..|.
T Consensus 4 ~~~~~~l~~~~~~~~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~ 83 (170)
T KOG2944|consen 4 DANALGLFSRADSSTPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFV 83 (170)
T ss_pred cccchhhhcccCCCCchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEE
Confidence 34456667777778899999999999999999999999999999998888888888899999987777888888788999
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCE
Q 026024 149 FGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 228 (244)
Q Consensus 149 ~~~~~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~ 228 (244)
+.++..+||.++|+++.++ ...|.+||..|+|++||||.|+|++.++++++++|+++...+.+|.+..++|+.|||||+
T Consensus 84 ~~~~~~~ELthn~Gtes~~-~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgyw 162 (170)
T KOG2944|consen 84 FSRNAKLELTHNWGTESPP-DQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYW 162 (170)
T ss_pred ecccCceeeecCCCCCCCc-chhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCe
Confidence 9999999999999998766 334899999999999999999999999999999999999999999998899999999999
Q ss_pred EEEEecC
Q 026024 229 IEIFDLK 235 (244)
Q Consensus 229 IEi~e~~ 235 (244)
|||..+.
T Consensus 163 iei~~~s 169 (170)
T KOG2944|consen 163 IEIELES 169 (170)
T ss_pred EEEeecC
Confidence 9998753
No 4
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.86 E-value=3.7e-20 Score=147.16 Aligned_cols=135 Identities=54% Similarity=0.910 Sum_probs=98.8
Q ss_pred CCCCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEee
Q 026024 80 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (244)
Q Consensus 80 ~~~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~ 159 (244)
+|-+..++++|+.|.|.|++++++||+++|||++..+...++..+..++++.++.. ....+++..
T Consensus 10 ~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~ 74 (150)
T TIGR00068 10 DPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDET---------------SAAVIELTH 74 (150)
T ss_pred CcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCC---------------CccEEEEee
Confidence 45588999999999999999999999999999998765545544555666643210 034456543
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCC--CCCcceEEEEECCCCCEEEEEecCCC
Q 026024 160 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDLKTI 237 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~--~g~~~~~~~~~DPdG~~IEi~e~~~~ 237 (244)
.+.... ...+ .+..|++|.|+|+++++++|+++|+++..++. .+.....+||+|||||+|||++....
T Consensus 75 ~~~~~~------~~~~----~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 75 NWGTEK------YDLG----NGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred cCCCCc------ccCC----CceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 322211 1111 26789999999999999999999999887663 23334578899999999999998765
Q ss_pred CC
Q 026024 238 GK 239 (244)
Q Consensus 238 ~~ 239 (244)
++
T Consensus 145 ~~ 146 (150)
T TIGR00068 145 KD 146 (150)
T ss_pred hh
Confidence 44
No 5
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=4.6e-20 Score=142.99 Aligned_cols=115 Identities=29% Similarity=0.497 Sum_probs=87.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCC-----------CcEEEEEeecCCCCCCCCCCccceeeecCCCcE
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPAT 154 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (244)
.++.|++|.|+|+++|++||+++|||++..+.+.++ +.+..+++++.+.. .+..
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~---------------~~~~ 65 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPED---------------DHFV 65 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCC---------------CccE
Confidence 368999999999999999999999999988776654 45555666643110 1568
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEe
Q 026024 155 IELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 155 leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e 233 (244)
|||+++++... +..|. + |++|.|+++ ++.++|+++|+++...+. +++|++||||+.|||+.
T Consensus 66 lEL~~n~~~~~------~~~g~----~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-----~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 66 VELTYNYGIGD------YELGN----D--FLGITIHSK-QAVSNAKKHNWPVTEVED-----GVYEVKAPGGYKFYLID 126 (127)
T ss_pred EEeEecCCCCC------CCCCC----C--EEEEEEECH-HHHHHHHHCCCceecCCC-----CEEEEECCCCCEEEEec
Confidence 99988765432 44332 3 677777776 556999999999987664 27899999999999986
No 6
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.84 E-value=9.2e-20 Score=142.89 Aligned_cols=128 Identities=17% Similarity=0.286 Sum_probs=89.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCC-----------CcEEEEEeecCCCCCCCCCCccceeeecCCCcE
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPAT 154 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (244)
.+++|++|.|+|++++++||++ |||++..+...++ ....+.++... .+...
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------------~g~~~ 63 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP-----------------DGHSR 63 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC-----------------CCCce
Confidence 4789999999999999999998 9999876543221 11223333221 12568
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCC-CcceEEEEECCCCCEEEEEe
Q 026024 155 IELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 155 leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g-~~~~~~~~~DPdG~~IEi~e 233 (244)
|||+....+....... ... ....|+.||+|.|+|+++++++|+++|+++..++... ...+.+|++|||||.|||+|
T Consensus 64 iel~~~~~~~~~~~~~-~~~--~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 64 LELSKFHHPAVIADHR-PAP--VNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred EEEEEecCCCCcCcCC-CCC--CCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 8988643332211100 101 1124788999999999999999999999998765432 23467899999999999998
Q ss_pred c
Q 026024 234 L 234 (244)
Q Consensus 234 ~ 234 (244)
.
T Consensus 141 ~ 141 (142)
T cd08353 141 Q 141 (142)
T ss_pred c
Confidence 4
No 7
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.84 E-value=2.1e-19 Score=136.27 Aligned_cols=121 Identities=60% Similarity=1.107 Sum_probs=90.6
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
|+|++|.|+|++++++||+++|||++..+...++..+..+++..++.. .+..+++........
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~l~~~~~~~~-- 63 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDED---------------SEGVLELTYNWGTEE-- 63 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCC---------------CccEEEEEecCCCCC--
Confidence 579999999999999999999999998776544445556667653210 145677754322211
Q ss_pred CCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEE
Q 026024 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~ 232 (244)
+...+ .+..|++|.|+|+++++++++++|+++..++.....++.+|++|||||+|||+
T Consensus 64 ---~~~~~----~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 64 ---PYDNG----NGFGHLAFAVDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred ---CcCCC----CCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 11112 26689999999999999999999999998886555556789999999999985
No 8
>PRK10291 glyoxalase I; Provisional
Probab=99.84 E-value=2e-19 Score=139.01 Aligned_cols=121 Identities=41% Similarity=0.755 Sum_probs=88.1
Q ss_pred EEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCC
Q 026024 92 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 171 (244)
Q Consensus 92 ~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~~ 171 (244)
+|.|+|++++++||+++|||++..+...++..+.+++++.++.. ....+++...+... +
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~------~ 59 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVD------K 59 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCC---------------CcceEEeeecCCCC------C
Confidence 48899999999999999999998776555555667777653211 13456665433211 1
Q ss_pred CCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCc--ceEEEEECCCCCEEEEEecCCC
Q 026024 172 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKTI 237 (244)
Q Consensus 172 ~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~--~~~~~~~DPdG~~IEi~e~~~~ 237 (244)
+..+ .+++|++|.|+|+++++++|+++|+++..++..... ..++||+|||||.|||++.+..
T Consensus 60 ~~~g----~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 60 YELG----TAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred CcCC----CCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 2222 267899999999999999999999998865532222 2467899999999999997653
No 9
>PRK11478 putative lyase; Provisional
Probab=99.83 E-value=3.1e-19 Score=137.25 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=84.9
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCC-CcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~ 163 (244)
..+++|++|.|+|++++++||+++|||++..+...++ ..+... +..+ ++..++|+....+
T Consensus 4 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~------------------~~~~l~l~~~~~~ 64 (129)
T PRK11478 4 LKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN------------------GQYVIELFSFPFP 64 (129)
T ss_pred cceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC------------------CCcEEEEEEecCC
Confidence 3568999999999999999999999999865422111 122111 1111 1467777653222
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCC-CcceEEEEECCCCCEEEEEec
Q 026024 164 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 164 ~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g-~~~~~~~~~DPdG~~IEi~e~ 234 (244)
...+ ......|+.||+|.|+|+++++++|+++|+++....... ....++||+|||||.|||+|.
T Consensus 65 ~~~~-------~~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 65 PERP-------SRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred CCCC-------CCCCCCceeEEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 2111 011123778999999999999999999999987543222 224578999999999999973
No 10
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=2.8e-19 Score=136.01 Aligned_cols=121 Identities=25% Similarity=0.359 Sum_probs=84.5
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
+++|++|.|+|++++++||+++|||++......+...+..+|+..++ +..++|+........
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~ 62 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD------------------GARLELMTRPDIAPS 62 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC------------------CcEEEEEcCcccCCC
Confidence 47899999999999999999999999865543333334445554422 456777643221110
Q ss_pred CCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEE
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 232 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~ 232 (244)
. . .....|+.|++|.|+ |+++++++|+++|+++...+.....+ ..++++|||||.|||.
T Consensus 63 ~----~---~~~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 63 P----N---EGERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred c----c---cCCCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 0 0 111247889999995 58999999999999998866433222 3467899999999983
No 11
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.82 E-value=4.3e-19 Score=143.22 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=87.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeC--C----------------CCcEEEEEeecCCCCCCCCCCccceee
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDF--P----------------EMKFSLYFLGYEDTASAPADPVDRTVW 147 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~--~----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (244)
.+++||+|.|+|+++|++||+++|||++..+... + ...+.+.++..+
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------------- 67 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG--------------- 67 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC---------------
Confidence 4689999999999999999999999988643110 0 011333444322
Q ss_pred ecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecC-C---CCC-cceEEEEE
Q 026024 148 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP-D---GGK-LKGVAFIK 222 (244)
Q Consensus 148 ~~~~~~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p-~---~g~-~~~~~~~~ 222 (244)
++..|+|+....... + .........|+.||+|.|+|+++++++++++|+++...+ . .+. ..+.+|++
T Consensus 68 ---~~~~ieL~~~~~~~~-~----~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 139 (162)
T TIGR03645 68 ---DRIGVELFEFKNQEN-P----EDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYME 139 (162)
T ss_pred ---CCCcEEEEeccCCCC-C----CcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEE
Confidence 245689887543322 1 110001124789999999999999999999998764422 1 111 12578999
Q ss_pred CCCCCEEEEEecCC
Q 026024 223 DPDDYWIEIFDLKT 236 (244)
Q Consensus 223 DPdG~~IEi~e~~~ 236 (244)
|||||.|||+++..
T Consensus 140 DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 140 DPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCEEEEEEcCh
Confidence 99999999999854
No 12
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.82 E-value=3.7e-19 Score=139.15 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=90.2
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
++|+.|.|.|++++++||+++|||++..+...++ ....++..+ ...++|........ .
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g-------------------~~~l~l~~~~~~~~-~ 58 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQG-------------------DINFVLNSPLNSFA-P 58 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcC-------------------CEEEEEecCCCCCC-c
Confidence 5899999999999999999999999987643221 223333321 34566643211111 0
Q ss_pred CCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCc-ceEEEEECCCCCEEEEEecCCCCCC
Q 026024 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFDLKTIGKI 240 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~-~~~~~~~DPdG~~IEi~e~~~~~~~ 240 (244)
...+. ...+.+..|++|.|+|+++++++|+++|++++.+|...++ .+.+|++|||||+|||++++..+..
T Consensus 59 -~~~~~--~~~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~~~~ 129 (136)
T cd08342 59 -VADFL--EKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGYKGP 129 (136)
T ss_pred -hHHHH--HhcCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCCCCc
Confidence 00000 0012377899999999999999999999999988876333 3588999999999999998776543
No 13
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=1.7e-18 Score=131.31 Aligned_cols=122 Identities=23% Similarity=0.350 Sum_probs=85.3
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCC-CcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
.+++|++|.|.|++++++||+++|||++......++ ..+.+ .+... ....++|+......
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~i~l~~~~~~~ 62 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLN------------------GGYQLELFSFPNPP 62 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecC------------------CCcEEEEEEcCCCC
Confidence 468999999999999999999999999876543222 22322 22211 14567765432211
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCc-ceEEEEECCCCCEEEEEe
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~-~~~~~~~DPdG~~IEi~e 233 (244)
... . .....|..|++|.|+|+++++++++++|+++...+..... ...+|++||+||.|||+|
T Consensus 63 ~~~----~---~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 63 ERP----S---YPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCC----C---CCcCCCceEEEEEeCCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 100 0 1112377899999999999999999999998876643332 347899999999999986
No 14
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.79 E-value=8.4e-18 Score=132.89 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=81.8
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCc-EEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK-FSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~ 163 (244)
..+|+|++|.|+|++++++||+++|||++..+...+++. ....|+..+. ..+.+.+... +
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-----------------~~h~~~~~~~--~ 64 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-----------------KPHDIAFVGG--P 64 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-----------------CcceEEEecC--C
Confidence 467999999999999999999999999987665322222 1233443221 1334444211 0
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEeCCHHH---HHHHHHHCCCeEEecCCC-CC-cceEEEEECCCCCEEEEEec
Q 026024 164 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPDG-GK-LKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 164 ~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~---~~~rl~~~Gv~v~~~p~~-g~-~~~~~~~~DPdG~~IEi~e~ 234 (244)
..+++|++|.|+|+++ ++++|+++|+++...|.. +. .+..+||+|||||.|||++.
T Consensus 65 ---------------~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 65 ---------------DGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred ---------------CCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 1267899999998777 678999999998766532 21 23568999999999999864
No 15
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.78 E-value=1.4e-18 Score=132.95 Aligned_cols=124 Identities=27% Similarity=0.418 Sum_probs=86.6
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
+++|+.|.|+|++++++||+++|||++......++..+..+++..+ ...++|........
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~l~~~~~~~~- 60 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG-------------------NTKVELLEPLGEDS- 60 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC-------------------CEEEEEEecCCCCC-
Confidence 4789999999999999999999999987654333333445555432 35677764322211
Q ss_pred CCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEec-CCCCCcc-eEEEE--ECCCCCEEEEEe
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-PDGGKLK-GVAFI--KDPDDYWIEIFD 233 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~-p~~g~~~-~~~~~--~DPdG~~IEi~e 233 (244)
. ...+.... ..|..|++|.|+|+++++++|+++|+++..+ +..+.++ +.+|+ +|||||+|||+|
T Consensus 61 ~-~~~~~~~~--~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 61 P-IAKFLEKN--GGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred h-HHHHHhcC--CCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 0 00011111 2377899999999999999999999999864 5555444 45566 799999999986
No 16
>PLN02300 lactoylglutathione lyase
Probab=99.78 E-value=1.3e-17 Score=146.32 Aligned_cols=129 Identities=36% Similarity=0.647 Sum_probs=95.4
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCC
Q 026024 83 TNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG 162 (244)
Q Consensus 83 ~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~ 162 (244)
....+++|++|.|+|++++++||+++|||++..+...++..+...+++.+... .+..+++....+
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~lel~~~~~ 84 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SNFVVELTYNYG 84 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCC---------------CceEEEEeccCC
Confidence 44678999999999999999999999999998765555555556666543210 135667754322
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCc--ceEEEEECCCCCEEEEEecCC
Q 026024 163 TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 163 ~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~--~~~~~~~DPdG~~IEi~e~~~ 236 (244)
... +..+ .|+.|++|.|+|+++++++++++|+++...+...+. ...+||+|||||.|||+++..
T Consensus 85 ~~~------~~~~----~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 85 VDK------YDIG----TGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred CCc------cccC----CCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 211 2122 377899999999999999999999999877643322 246799999999999999754
No 17
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.78 E-value=3.1e-18 Score=136.86 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=82.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCC-CCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
+++||+|.|+|++++++||+++|||++..+...+ .......|+..++..... .++.+.+...
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~l~~~----- 63 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYV------------DHHTLALAQG----- 63 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcc------------cchHHHHhcC-----
Confidence 4789999999999999999999999987664433 122345555542210000 0111222110
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHH---HHHHHCCCeEEecCCCCCc--ceEEEEECCCCCEEEEEecC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~---~rl~~~Gv~v~~~p~~g~~--~~~~~~~DPdG~~IEi~e~~ 235 (244)
...|++||||.|+|++++. ++|+++|+++...+..... ..++|++|||||.|||+...
T Consensus 64 ------------~~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 64 ------------PESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred ------------CCCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 0137899999999999986 9999999999876633222 23679999999999999754
No 18
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.5e-17 Score=126.73 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=78.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
|++.|+.|.|+|++++++||+++|||++..... . + ..+.+ ...+.+...+....
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~~~~---------------------~~~l~~~~~~~~~~ 54 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VTFEG---------------------GFALQEGYSWLEGI 54 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EEEec---------------------cceeccchhhhccC
Confidence 578999999999999999999999999875321 1 1 11211 11111111010000
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCC-eEEecCCCCCcc-eEEEEECCCCCEEEEEec
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGV-EFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv-~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e~ 234 (244)
... +... +.+..|++|.|+|+++++++|+++|+ ++..++...+++ +.+||+|||||+|||.+.
T Consensus 55 ~~~--~~~~----~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 55 SKA--DIIE----KSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred Ccc--cccc----cCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 000 0011 12446999999999999999999985 787777655554 589999999999999874
No 19
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.76 E-value=2.1e-17 Score=132.21 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=86.1
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCC---CCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEee
Q 026024 83 TNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP---EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (244)
Q Consensus 83 ~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~ 159 (244)
|+.++|+|++|.|+|++++++||+++|||++..+...+ +......|+..++ .++.+.+..
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~i~~~~ 67 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG-----------------RHHSLALAE 67 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC-----------------CCCCEEEEc
Confidence 77899999999999999999999999999987653321 1123345554322 134455532
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHH---HHHHHHHHCCCeEEecCCCCC--cceEEEEECCCCCEEEEEec
Q 026024 160 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd---~~~~rl~~~Gv~v~~~p~~g~--~~~~~~~~DPdG~~IEi~e~ 234 (244)
... +.+++||+|.|+|++ +++++|+++|+++...+.... ....+|++|||||.|||...
T Consensus 68 ~~~----------------~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 68 GPG----------------PKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred CCC----------------CceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 100 127889999998654 689999999999987664322 23468999999999999875
Q ss_pred C
Q 026024 235 K 235 (244)
Q Consensus 235 ~ 235 (244)
.
T Consensus 132 ~ 132 (154)
T cd07237 132 G 132 (154)
T ss_pred c
Confidence 3
No 20
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=4.2e-17 Score=122.48 Aligned_cols=119 Identities=19% Similarity=0.314 Sum_probs=83.7
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~ 169 (244)
|++|.|.|++++++||+++|||++..+....+ ....+++...+. ....+++........ .
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~-~-- 60 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS----------------PETSLVLAPPANPAA-M-- 60 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC----------------CeeEEEEeCCCCccc-c--
Confidence 89999999999999999999999987754222 223334432210 023455543221111 0
Q ss_pred CCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEe
Q 026024 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 170 ~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e 233 (244)
. . ..+.+..|++|.|+|+++++++++++|+++..++.....+..+|++|||||.|||+|
T Consensus 61 ~-~----~~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 61 S-G----LQPGGTPGLVLATDDIDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred c-c----ccCCCceEEEEEehHHHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 0 0 112367799999999999999999999999988854455678999999999999975
No 21
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.75 E-value=5.1e-17 Score=124.02 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=81.1
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
.++++|+.|.|+|++++++||+++|||++..... ++. .++...+. ..++.+.+.. ..
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~---~~~~~~~~---------------~~~~~~~l~~--~~- 58 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QGR---VYLKAWDE---------------FDHHSIVLRE--AD- 58 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cce---EEEEccCC---------------CcccEEEecc--CC-
Confidence 4789999999999999999999999999876531 211 22322110 0133444421 00
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCC--CCcceEEEEECCCCCEEEEEecC
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG--GKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~--g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
..++.|++|.|+ |+++++++++++|+++...+.. ...+..+||+|||||.|||+...
T Consensus 59 --------------~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 59 --------------TAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred --------------CCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 015689999997 8999999999999998875532 22245789999999999998754
No 22
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.75 E-value=5.6e-17 Score=124.30 Aligned_cols=111 Identities=18% Similarity=0.333 Sum_probs=80.5
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
.++++|+.|.|+|+++|++||+++|||++.... +.+....++ . +..+++... ..
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~------------------~~~l~~~~~--~~ 55 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N------------------GVSLDFAQP--DG 55 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C------------------CcEEEEecC--CC
Confidence 478999999999999999999999999987632 112111111 1 345555321 00
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeC--CHHHHHHHHHHCCCeEEecCCCC--------CcceEEEEECCCCCEEEEEec
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDGG--------KLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~Vd--Dvd~~~~rl~~~Gv~v~~~p~~g--------~~~~~~~~~DPdG~~IEi~e~ 234 (244)
. .+..|++|.|+ |+++++++++++|+++...+... ..++.+||+|||||.|||++.
T Consensus 56 --------~------~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 56 --------E------IPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred --------C------CCcceEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 0 13469999997 69999999999999987765321 234579999999999999986
Q ss_pred C
Q 026024 235 K 235 (244)
Q Consensus 235 ~ 235 (244)
.
T Consensus 122 ~ 122 (123)
T cd08351 122 P 122 (123)
T ss_pred c
Confidence 3
No 23
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.75 E-value=6.6e-17 Score=121.61 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=80.6
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
+.|+.|.|+|++++++||+++|||++..... +...+ .++..++ ...+.+.......
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~------------------~~~~~~~~~~~~~--- 56 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG------------------GAVGGLMKAPEPA--- 56 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC------------------ccEEEEecCCCCC---
Confidence 3699999999999999999999999876542 12233 2333221 2334443221110
Q ss_pred CCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCC-cceEEEEECCCCCEEEEEe
Q 026024 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~-~~~~~~~~DPdG~~IEi~e 233 (244)
....+..|++|.|+|+++++++|+++|+++..++...+ .+..+|++|||||.|||+|
T Consensus 57 ---------~~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 57 ---------AGSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred ---------CCCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 00124469999999999999999999999998875544 4467999999999999975
No 24
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.75 E-value=8.5e-17 Score=129.55 Aligned_cols=116 Identities=19% Similarity=0.302 Sum_probs=79.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
++|+|++|.|+|++++++||+++|||++......+.+.....++.... ..+.+.+... .
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~i~l~~~--~-- 60 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG-----------------GVHDTALTGG--N-- 60 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC-----------------CcceEEEecC--C--
Confidence 689999999999999999999999999875543222222233443211 1334444211 0
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeE--EecCCC-CC-cceEEEEECCCCCEEEEEecC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEF--AKKPDG-GK-LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v--~~~p~~-g~-~~~~~~~~DPdG~~IEi~e~~ 235 (244)
+ .++.|++|.|+| +++++++|+++|+.. ...+.. +. ....+|++|||||.|||++..
T Consensus 61 ---------~----~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 61 ---------G----PRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred ---------C----CceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 0 267899999985 888899999999863 233321 21 123689999999999998744
No 25
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=1.5e-16 Score=121.50 Aligned_cols=118 Identities=24% Similarity=0.375 Sum_probs=83.9
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
|+++|+.|.|+|++++.+||+++|||++.... + . .++++.++. ...|.+........
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~~-----------------~~~l~l~~~~~~~~ 57 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGGK-----------------RPLLVLEEDPDAPP 57 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCCC-----------------eEEEEEEeCCCCCc
Confidence 68999999999999999999999999998762 1 1 234443210 34566644322110
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
. .. ...+..|++|.|+ |+++++++++++|+++..... ......+|++|||||.|||.....
T Consensus 58 -~----~~----~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 58 -A----PP----GATGLYHFAILLPSRADLAAALRRLIELGIPLVGASD-HLVSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred -c----cC----CCCcEEEEEEECCCHHHHHHHHHHHHHcCCceecccc-ccceeEEEEECCCCCEEEEEEecC
Confidence 0 11 1136789999997 599999999999998765432 233456899999999999998654
No 26
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.74 E-value=9.3e-17 Score=129.00 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=83.4
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
++||+|.|+|++++++||+++|||++..+.. .. ..+...+.. .+..|++........
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~~----------------~~~~l~l~~~~~~~~-- 58 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DR--VRLEEGGGG----------------PGAVVDVLEEPDQPR-- 58 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CE--EEEEecCCC----------------CCCEEEEEeCCCCCC--
Confidence 6899999999999999999999999987643 12 222222100 156788865321110
Q ss_pred CCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCC
Q 026024 168 DFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
... ...++.||+|.|+| +++++++|+++|+++.... +....+.+||+|||||.|||+....
T Consensus 59 ----~~~---~~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~-~~~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 59 ----GRP---GAGTVHHVAFRVPDDEELEAWKERLEALGLPVSGIV-DRFYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred ----Ccc---cCCceEEEEEECCCHHHHHHHHHHHHHCCCCccccc-ccccEEEEEEECCCCcEEEEEECCC
Confidence 001 11367899999998 9999999999999864433 2233457899999999999999753
No 27
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=1.5e-16 Score=123.91 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=81.7
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
.+++|++|.|+|++++++||+++|||++..+.. . ...|+..++.. .++.+.+......
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~---------------~~~~i~l~~~~~~-- 59 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGG---------------DHHNLFLIKTPAP-- 59 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCC---------------CCcEEEEecCCCC--
Confidence 478999999999999999999999999876532 1 13344432100 1456666432110
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHH---HHHHHCCCeEEecCCCCCc--ceEEEEECCCCCEEEEEecC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~---~rl~~~Gv~v~~~p~~g~~--~~~~~~~DPdG~~IEi~e~~ 235 (244)
..|++||+|.|+|++++. ++|+++|+++...+...+. ...+||+|||||.|||....
T Consensus 60 -------------~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 60 -------------MAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred -------------CCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 127899999999887766 5999999998765533222 23589999999999999743
No 28
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.74 E-value=6.1e-17 Score=120.16 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=81.0
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
|+|++|.|+|++++++||+++|||++..+...+. ...++..++ ...+++.........
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~------------------~~~i~l~~~~~~~~~- 58 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD------------------GPQLHLIEEDPPDAL- 58 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC------------------CcEEEEEecCCCccc-
Confidence 5799999999999999999999999876543221 112332211 235666543222110
Q ss_pred CCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEE
Q 026024 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 231 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi 231 (244)
. ....+..|++|.|+|+++++++++++|+++...+........+|++|||||.|||
T Consensus 59 ----~----~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 59 ----P----EGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred ----c----CCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 0 0112567999999999999999999999998877543444578999999999996
No 29
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.73 E-value=1.1e-16 Score=121.78 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=82.7
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCC-cEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
+++|++|.|+|++++++||+++|||++..+....+. .....++..... ..+..|+|........
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~~ 65 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLG---------------SPGTLLTFFEWPDAGP 65 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCC---------------CCCCEEEEEecCCCCC
Confidence 368999999999999999999999998876542221 111223322100 0145677765322211
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEE
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~ 232 (244)
. ......+..|++|.|+ |+++++++++++|+++...+.. ...+.+|++|||||+|||+
T Consensus 66 -~-------~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 66 -K-------GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDH-FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred -C-------CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEee-cceEEEEEECCCCCEEEeC
Confidence 0 0111236789999998 5799999999999998765432 2345789999999999985
No 30
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1.9e-16 Score=120.74 Aligned_cols=122 Identities=21% Similarity=0.301 Sum_probs=77.6
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC-
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD- 166 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~- 166 (244)
+.|+.|.|+|++++.+||+++|||++..... +..+.. +..+ ...+.+.........
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~ 57 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG-------------------ETTLAFASHDLAESNL 57 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC-------------------cEEEEEEccccccccc
Confidence 4699999999999999999999999865422 222211 1110 122222211000000
Q ss_pred C-CCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEEec
Q 026024 167 P-DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 167 ~-~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e~ 234 (244)
+ ...+ ......+ +..|++|.|+|+++++++++++|+++..++...+++ +.++++|||||.|||+++
T Consensus 58 ~~~~~~-~~~~~~~-~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 58 KGGFVK-ADPAQPP-AGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred ccCccC-CccccCC-CcEEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 0 0000 0000111 335999999999999999999999998877554443 468899999999999874
No 31
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.73 E-value=1.8e-16 Score=120.93 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=80.2
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
..+++|+.|.|+|++++.+||+++|||++..+.. . ..++...+.. .++.+.+... .
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~---------------~~~~~~l~~~--~- 59 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDY---------------EHHSLKLTES--P- 59 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCC---------------CccEEEEeeC--C-
Confidence 4689999999999999999999999999887632 1 2334321100 1345555321 0
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecC
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
..|.+|++|.|+ |+++++++++++|+++...+.....+..+|++|||||.||++...
T Consensus 60 --------------~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 60 --------------EAGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred --------------CCceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 026789999997 688999999999998754332222345689999999999998643
No 32
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.73 E-value=1.9e-16 Score=124.17 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=82.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
.+++|+.|.|+|++++++||+++|||++..+.. ...++..+ +..+.+.......
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~-------------------g~~l~l~~~~~~~- 56 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN-------------------GLWIALNEEKDIP- 56 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC-------------------CeEEEeeccCCCC-
Confidence 468999999999999999999999999875421 12333321 3345543211110
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeC--CHHHHHHHHHHCCCeEEecCCC-CCcceEEEEECCCCCEEEEEecC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~Vd--Dvd~~~~rl~~~Gv~v~~~p~~-g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
. . ....++.|++|.++ |+++++++++++|+++...+.. ...+..+|++|||||+|||.+..
T Consensus 57 ------~--~-~~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 57 ------R--N-EIHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ------C--c-cCCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 0 0 01136789999998 9999999999999998765532 23456789999999999999753
No 33
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.72 E-value=2e-17 Score=125.59 Aligned_cols=120 Identities=28% Similarity=0.364 Sum_probs=79.9
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeee--CCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLD--FPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
+|+|++|.|+|++++++||+++|||+++.... .........++..+ ...+++.......
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~ 61 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG-------------------EGHIELFLNPSPP 61 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST-------------------SSCEEEEEEESSS
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc-------------------ccceeeeeecccc
Confidence 68999999999999999999999999998765 12233334444433 3345554433322
Q ss_pred CCCCCCCCC-CCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcc--eEEEEECCCCCEEEE
Q 026024 165 SDPDFKGYH-NGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK--GVAFIKDPDDYWIEI 231 (244)
Q Consensus 165 ~~~~~~~~~-~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~--~~~~~~DPdG~~IEi 231 (244)
..... .. .. .+..|+++.+. |+++++++|++.|+++...+.....+ ..+|++|||||.|||
T Consensus 62 ~~~~~--~~~~~----~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 62 PRASG--HSFPE----HGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SSSEE--EHHHS----HTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred ccccc--ccccc----ccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 21100 00 00 02346666664 78889999999999999887433332 245799999999997
No 34
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.72 E-value=2.7e-16 Score=138.59 Aligned_cols=153 Identities=19% Similarity=0.251 Sum_probs=94.8
Q ss_pred cccccchhhhhhhccCCCC-CCC-CCCCCCCCCCCCCCCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcE
Q 026024 47 SWFKASNRFRLLSMASSEP-KES-PANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF 124 (244)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~ 124 (244)
-+++||.++.++-...... ... ....+.......+.....+++||+|.|+|++++++||+++|||++..+...+++..
T Consensus 103 ~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~ 182 (303)
T TIGR03211 103 VRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKE 182 (303)
T ss_pred EEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcE
Confidence 4689999999884332211 100 00001101111111235689999999999999999999999999876644333321
Q ss_pred -EEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHH
Q 026024 125 -SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFE 200 (244)
Q Consensus 125 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~ 200 (244)
...|+..+.. .+.+.+... . .+.+++||||.|+| +++++++|+
T Consensus 183 ~~~~~~~~~~~-----------------~~~~~~~~~--~--------------~~g~~~Hiaf~v~~~~~v~~~~~~l~ 229 (303)
T TIGR03211 183 QAAAWLSVSNK-----------------AHDIAFVGD--P--------------EPGKLHHVSFFLDSWEDVLKAADVMS 229 (303)
T ss_pred EEEEEEEcCCC-----------------CcccceecC--C--------------CCCceEEEEEEcCCHHHHHHHHHHHH
Confidence 2334432110 222322110 0 01137899999986 666888999
Q ss_pred HCCCeEEecCCC-CC-cceEEEEECCCCCEEEEE
Q 026024 201 RLGVEFAKKPDG-GK-LKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 201 ~~Gv~v~~~p~~-g~-~~~~~~~~DPdG~~IEi~ 232 (244)
++|+++...|.. +. .+..+||+|||||.|||.
T Consensus 230 ~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 230 KNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred hCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 999998877643 22 235799999999999998
No 35
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=2.7e-16 Score=119.17 Aligned_cols=118 Identities=22% Similarity=0.333 Sum_probs=81.3
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
.+++|+.|.|+|++++++||+++|||++......+ .+ ..+..+ ...+++........
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~-------------------~~~~~l~~~~~~~~ 58 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFG-------------------SQKINLHPVGGEFE 58 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeC-------------------CEEEEEecCCCccC
Confidence 46899999999999999999999999988654311 11 112211 24566643221110
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCC-HHHHHHHHHHCCCeEEecCCC--C--CcceEEEEECCCCCEEEEEe
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDD-VYKACERFERLGVEFAKKPDG--G--KLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdD-vd~~~~rl~~~Gv~v~~~p~~--g--~~~~~~~~~DPdG~~IEi~e 233 (244)
+. ... ...|..|++|.+++ +++++++++++|+++...+.. + ..+..+||+|||||+|||++
T Consensus 59 -~~--~~~----~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 59 -PA--AGS----PGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred -cC--ccC----CCCCCceEEEEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 00 011 11367899999975 999999999999998876532 1 12357899999999999987
No 36
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.72 E-value=6.1e-16 Score=119.88 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=82.6
Q ss_pred EEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 026024 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (244)
Q Consensus 89 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~ 168 (244)
+|++|.|+|++++++||+++|||++......+ +....+|+..++. +..+.+.....
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~~~------ 56 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED-----------------HHDLALFPGPE------ 56 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC-----------------cceEEEEcCCC------
Confidence 59999999999999999999999987664433 2233455543221 34566542110
Q ss_pred CCCCCCCCCCCCcceEEEEEeCCHH---HHHHHHHHCCCeEEecCCCCC--cceEEEEECCCCCEEEEEecCC
Q 026024 169 FKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 169 ~~~~~~g~~~p~g~~hi~f~VdDvd---~~~~rl~~~Gv~v~~~p~~g~--~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
..++.|++|.|+|++ +++++++++|+++..++.... ....+||+|||||.|||.+...
T Consensus 57 ----------~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 57 ----------RPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred ----------CCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 126789999999764 789999999999987664322 2356899999999999998644
No 37
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.72 E-value=2e-16 Score=120.73 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=78.6
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
++.|+.|.|+|+++|++||+++|||++..+.. . . ..++..++ .++.+.|... ..
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~-~--~~~~~~~~-----------------~~~~~~l~~~--~~-- 55 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D-G--ALYLRMDD-----------------RAWRIAVHPG--EA-- 55 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC--C-C--eEEEEccC-----------------CceEEEEEeC--CC--
Confidence 57899999999999999999999999865421 1 1 23333221 1345555321 10
Q ss_pred CCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCC----CCCcceEEEEECCCCCEEEEEec
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD----GGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~----~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.++.|++|.|+ |+++++++|+++|+++...+. ....+..+||+|||||.||++..
T Consensus 56 -------------~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 56 -------------DDLAYAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred -------------CceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 15679999997 599999999999999987542 11223578999999999999864
No 38
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=9.8e-16 Score=116.77 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=80.7
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCC
Q 026024 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (244)
Q Consensus 91 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~ 170 (244)
..|.|+|++++++||+++||+++......+++......+..+ ...+.+..........
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~~~~~~~--- 60 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG-------------------DGGVMVGSVRDDYRAS--- 60 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC-------------------CEEEEEecCCCccccc---
Confidence 468999999999999999999998765333333322333322 2344443322111100
Q ss_pred CCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEEe
Q 026024 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 171 ~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e 233 (244)
. .. ....+..|++|.|+|+++++++++++|+++..++....++ ..++++|||||+|+|.+
T Consensus 61 -~-~~-~~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 61 -S-AR-AGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred -c-cc-cCCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 0 00 0112456999999999999999999999999888655444 56889999999999975
No 39
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=3.6e-16 Score=121.47 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=78.8
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCc--EEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK--FSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~ 163 (244)
.+++|+.|.|+|++++++||+++|||++..+....... ...++. . +...+++... .
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~i~l~~~--~ 60 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-I-------------------GGLWIAIMEG--D 60 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-c-------------------CCeEEEEecC--C
Confidence 36899999999999999999999999876653211000 000111 1 1345666421 1
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEeC--CHHHHHHHHHHCCCeEEecCCC-CCcceEEEEECCCCCEEEEEec
Q 026024 164 ESDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 164 ~~~~~~~~~~~g~~~p~g~~hi~f~Vd--Dvd~~~~rl~~~Gv~v~~~p~~-g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
. . ...+.+|++|.|+ |+++++++|+++|+++..+... ...++.+||+|||||.|||...
T Consensus 61 ~-------~-----~~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 61 S-------L-----QERTYNHIAFKISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred C-------C-----CCCCceEEEEEcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 0 0 0125689999998 7999999999999987654321 1134579999999999999874
No 40
>PLN02300 lactoylglutathione lyase
Probab=99.71 E-value=2.9e-16 Score=137.70 Aligned_cols=129 Identities=32% Similarity=0.543 Sum_probs=96.5
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
.++.|+.|.|+|++++.+||+++|||++......++..+...++++++.. ....+++....+...
T Consensus 153 ~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lel~~~~~~~~ 217 (286)
T PLN02300 153 EPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPED---------------KTTVLELTYNYGVTE 217 (286)
T ss_pred CcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCC---------------CccEEEEeecCCCCc
Confidence 46789999999999999999999999998765545555666666543210 134566654332211
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCc--ceEEEEECCCCCEEEEEecCCCCC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKTIGK 239 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~--~~~~~~~DPdG~~IEi~e~~~~~~ 239 (244)
+..++ +++|++|.|+|+++++++++++|+++..+|...+. ++.++|+|||||.|+|++...+-+
T Consensus 218 ------~~~g~----~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~ 283 (286)
T PLN02300 218 ------YTKGN----AYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLK 283 (286)
T ss_pred ------cccCC----ceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhh
Confidence 22232 77899999999999999999999999987754332 357889999999999999877654
No 41
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.71 E-value=3.6e-16 Score=136.89 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=96.9
Q ss_pred cccccccchhhhhhhccCCCC-CCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCC--C
Q 026024 45 TTSWFKASNRFRLLSMASSEP-KESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP--E 121 (244)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~--~ 121 (244)
..-|++||.+++++-...... ...+...+..... ..+...+|+|++|.|+|++++++||+++|||++..+...+ +
T Consensus 101 ~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~ 178 (286)
T TIGR03213 101 GLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSG--FVTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGP 178 (286)
T ss_pred EEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCc--cccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCC
Confidence 346899999999994332211 1111111110000 1223578999999999999999999999999987654322 1
Q ss_pred C-cEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHH---HHH
Q 026024 122 M-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACE 197 (244)
Q Consensus 122 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~---~~~ 197 (244)
+ .+..+|+..++. ++.+.+... . . ..+++||+|+|+|+++ +++
T Consensus 179 g~~~~~~~l~~~~~-----------------~~~~~l~~~--~----------~----~~~~~Hiaf~v~d~~~v~~~~~ 225 (286)
T TIGR03213 179 GVTVRPYFLHCNER-----------------HHSLAFAAG--P----------S----EKRLNHLMLEVDTLDDVGLALD 225 (286)
T ss_pred CCcceEEEEEECCC-----------------cceEEEecC--C----------C----CCceEEEEEEcCCHHHHHHHHH
Confidence 1 122445544221 344554321 0 0 1267899999987666 899
Q ss_pred HHHHCCCeEEecCC-CCC-cceEEEEECCCCCEEEEEe
Q 026024 198 RFERLGVEFAKKPD-GGK-LKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 198 rl~~~Gv~v~~~p~-~g~-~~~~~~~~DPdG~~IEi~e 233 (244)
+|+++|+ ....+. .+. ....+|++|||||+||+..
T Consensus 226 ~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 226 RVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred HHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 9999999 444442 222 2347889999999999976
No 42
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=1.2e-16 Score=121.99 Aligned_cols=123 Identities=26% Similarity=0.419 Sum_probs=84.9
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCC-CCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
++||.|.|+|++++.+||+++|||++......+ +..+..+++..+ +..+++.........
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~l~l~~~~~~~~~ 61 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG-------------------NVQIELIEPLDDDSP 61 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC-------------------CEEEEEEEECCCCCc
Confidence 579999999999999999999999998765432 223344555432 467777654322111
Q ss_pred CCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCC-CCCcce-EEEEECCC--CCEEEEEe
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKG-VAFIKDPD--DYWIEIFD 233 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~-~g~~~~-~~~~~DPd--G~~IEi~e 233 (244)
. ..+. .....|..|++|.|+|+++++++++++|+++..++. ....+. ++|+.||| ||+|||+|
T Consensus 62 ~--~~~~--~~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 62 I--AKFL--EKRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred H--HHHH--hcCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 0 0000 011247789999999999999999999999988775 333333 45555555 99999985
No 43
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.71 E-value=4.9e-16 Score=125.83 Aligned_cols=119 Identities=17% Similarity=0.276 Sum_probs=81.5
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
..+++|++|.|+|++++++||+++|||++......+.+.....|+.... ....+.+... ..
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~l~~~--~~ 64 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN-----------------KVHDVAYTRD--PA 64 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC-----------------CceeEEEecC--CC
Confidence 4679999999999999999999999999876643332222233443211 1233443211 10
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCCc-c-eEEEEECCCCCEEEEEec
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKL-K-GVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~~-~-~~~~~~DPdG~~IEi~e~ 234 (244)
..+.+++||+|.|+| +++++++|+++|+++...|..... . .++|++|||||+|||++.
T Consensus 65 ------------~~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 65 ------------GARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ------------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 011256899999985 558889999999998766543222 2 258899999999999987
No 44
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.71 E-value=5.2e-16 Score=116.86 Aligned_cols=110 Identities=24% Similarity=0.369 Sum_probs=81.5
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
|+++|+.|.|+|++++++||+++|||++..... . ..++..+.. .+..+.+... ..
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~--~~~~~~~~~----------------~~~~~~~~~~--~~- 55 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----G--SVYLRCSED----------------DHHSLVLTEG--DE- 55 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----C--eEEEecCCC----------------CcEEEEEEeC--CC-
Confidence 579999999999999999999999999887642 1 233332210 1344554321 10
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCC-cceEEEEECCCCCEEEEEec
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~-~~~~~~~~DPdG~~IEi~e~ 234 (244)
.+..|++|.|+ |+++++++++++|+++...+...+ .++.+|+.|||||.||++..
T Consensus 56 --------------~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 56 --------------PGVDALGFEVASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred --------------CCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 15679999997 689999999999999988774322 34578999999999999975
No 45
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.71 E-value=5.3e-16 Score=116.50 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=77.3
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~ 169 (244)
+..|.|+|++++++||+++|||++... .+ + ..++..... .+..+.+......
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~-~~~~~~~~~----------------~~~~~~~~~~~~~------ 54 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG-W-IATFASPQN----------------MTVQVSLATEGGT------ 54 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC-c-eEEEeecCC----------------CCcEEEEecCCCC------
Confidence 456899999999999999999998643 11 2 223322110 0345555322110
Q ss_pred CCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEEec
Q 026024 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 170 ~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e~ 234 (244)
+ ....|++|.|+|+++++++|+++|+++..++....++ +.+|+.|||||.|||+++
T Consensus 55 -----~----~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 55 -----A----TVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred -----C----CCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 0 1335999999999999999999999998877554444 578999999999999975
No 46
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=6.2e-16 Score=117.26 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=80.5
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
+.|+.|.|.|++++++||+++|||++..+ +++.+ .++..++ ...+.+..........
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~------------------~~~~~l~~~~~~~~~~ 57 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGG------------------RGMLLLFDPGATSTPG 57 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCC------------------CcEEEEEecCCccccc
Confidence 46899999999999999999999998864 12222 3343322 2334443322111000
Q ss_pred CCCCCCCCCCCCCcceEEEEEe--CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 168 DFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~V--dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.. .. .....+..|++|.| +|++++++++.++|+++...+.....+..+|++|||||.|||+++
T Consensus 58 ~~--~~--~~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 58 GE--IP--PHGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CC--CC--CCCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 00 00 00113678999999 489999999999999987766433344578999999999999874
No 47
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=7e-16 Score=118.32 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=83.3
Q ss_pred EEEEEEEEcCCHHHHHHHHHhcc---CCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~ 163 (244)
+++|+.|.|+|++++.+||+++| ||++..... +.. .|.... .+..+++......
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~~---~~~~~~------------------~~~~i~l~~~~~~ 57 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DGR---SWRAGD------------------GGTYLVLQQADGE 57 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cCc---eEEecC------------------CceEEEEEecccC
Confidence 47899999999999999999999 999887642 111 111111 1467777643322
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCC----CCcceEEEEECCCCCEEEEEec
Q 026024 164 ESDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 164 ~~~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~----g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.. .. .. ....|..|++|.|+ |+++++++++++|+++...+.. ......+|++|||||+|||+.+
T Consensus 58 ~~-~~---~~---~~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 58 SA-GR---HD---RRNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred CC-cc---cc---cCCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 11 10 11 11237789999997 5899999999999999887753 2234578999999999999864
No 48
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=6.3e-16 Score=118.90 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=80.1
Q ss_pred CceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 026024 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (244)
Q Consensus 84 ~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~ 163 (244)
...+|.|+.|.|+|++++.+||+++|||++..+.. . ..|+..+. .++.+.+... .
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~--~----~~~l~~~~-----------------~~~~i~l~~~--~ 57 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA--K----ATYFRSDA-----------------RDHTLVYIEG--D 57 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC--C----eEEEEcCC-----------------ccEEEEEEeC--C
Confidence 34689999999999999999999999999875421 1 23444321 1344555321 1
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCC----CCcceEEEEECCCCCEEEEEecC
Q 026024 164 ESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 164 ~~~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~----g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
.+..|++|+|+| +++++++++++|+++...+.. ...+.++||+|||||.|||+.+.
T Consensus 58 ----------------~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 58 ----------------PAEQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ----------------CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 034699999975 999999999999998765421 11234678999999999998754
No 49
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.70 E-value=2.8e-16 Score=122.12 Aligned_cols=114 Identities=16% Similarity=0.251 Sum_probs=79.9
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
|+||.|.|+|++++++||+++|||++..... . ..++..+ +..+++.......
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~--~----~~~~~~~-------------------~~~l~l~~~~~~~--- 52 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE--K----TAYFTIG-------------------GTWLALNEEPDIP--- 52 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC--c----cceEeeC-------------------ceEEEEEccCCCC---
Confidence 5899999999999999999999999865421 1 1223221 3445553321110
Q ss_pred CCCCCCCCCCCCCcceEEEEEeC--CHHHHHHHHHHCCCeEEecCCC-CCcceEEEEECCCCCEEEEEecCC
Q 026024 168 DFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~Vd--Dvd~~~~rl~~~Gv~v~~~p~~-g~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
.. ....+.+||+|.|+ |+++++++|+++|+++..++.. ...++.+|++|||||.|||.+...
T Consensus 53 ----~~---~~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 53 ----RN---EIRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred ----cC---CcCccceEEEEEecHHHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCcH
Confidence 00 01136789999998 4999999999999998755432 223457899999999999998643
No 50
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.70 E-value=9.1e-16 Score=116.22 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=78.0
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~ 169 (244)
++.|.|+|++++++||+++|||++.... ..+ ..+..++. ...|.+.... ....+.
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~~-----------------~~~l~l~~~~-~~~~~~- 58 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPDG-----------------GVELAFMLPG-HETVPA- 58 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCCC-----------------ceEEEEccCC-CCCCcc-
Confidence 6789999999999999999999988652 122 22322110 2345553221 111000
Q ss_pred CCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEEe
Q 026024 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 170 ~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e 233 (244)
. .......+ .|++|.|+|+++++++++++|+++..++...+++ +.++++|||||.|||+|
T Consensus 59 --~-~~~~~~~~-~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 59 --A-QYQFQGQG-LILNFEVDDVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred --h-hcccCCce-EEEEEEECCHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 0 00111123 4999999999999999999999988877654444 57899999999999986
No 51
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.69 E-value=1.3e-15 Score=118.01 Aligned_cols=119 Identities=24% Similarity=0.391 Sum_probs=83.3
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
+|+|+.|.|+|++++++||+++|||++....+. .. ..++..+.. .+..+.+........
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~~----------------~~~~l~l~~~~~~~~- 59 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDPD----------------EHHQIALITGRPAAP- 59 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecCC----------------CceEEEEEecCCCCC-
Confidence 589999999999999999999999998765321 12 334433200 135666654322110
Q ss_pred CCCCCCCCCCCCCCcceEEEEEeCCHH---HHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCC
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~VdDvd---~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
.....+++|++|.|+|++ +++++++++|+++...+..+. ++.+|++|||||.|||+....
T Consensus 60 ---------~~~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 60 ---------PPGPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDHGN-AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred ---------CCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCCCc-eeEEEEECCCCCEEEEEEcCC
Confidence 011236789999998755 688999999999887654332 356899999999999998654
No 52
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.69 E-value=1.2e-15 Score=120.80 Aligned_cols=112 Identities=18% Similarity=0.334 Sum_probs=80.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
.+++|+.|.|+|++++++||+++|||++..... + ...|+..+.. +..+.+... .
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~-----------------~~~~~l~~~--~-- 56 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD-----------------HHSIAIARG--P-- 56 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC-----------------cceEEEccC--C--
Confidence 479999999999999999999999999865421 1 1344543321 344555311 0
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHH---HHHHHCCCeEEecCCC-CCc-ceEEEEECCCCCEEEEEecCC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDG-GKL-KGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~---~rl~~~Gv~v~~~p~~-g~~-~~~~~~~DPdG~~IEi~e~~~ 236 (244)
. .++.|++|.|+|++++. ++|+++|+++...+.. +.. ..++||+|||||.|||++...
T Consensus 57 ---------~----~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 57 ---------H----PSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred ---------C----CceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 0 26689999999877764 8999999999876532 222 246789999999999998643
No 53
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.68 E-value=1.7e-15 Score=114.33 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=76.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
.+++|+.|.|+|++++++||++ |||++..+.. + ..++..++. ...+.+.. .+.
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~-----------------~~~~~~~~-~~~-- 54 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGT-----------------DPFVYVAR-KGE-- 54 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCC-----------------ccEEEEcc-cCC--
Confidence 4799999999999999999999 9999876521 1 123322110 12222211 110
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
..++.|++|.|+|.+++.+.+++.|+.+...+.....+..+||+|||||.|||+..
T Consensus 55 -------------~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 55 -------------KARFVGAAFEAASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred -------------cCcccEEEEEECCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 02567999999999999999999999887654312224578999999999999764
No 54
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=3.4e-15 Score=113.02 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=81.1
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCC
Q 026024 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (244)
Q Consensus 91 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~ 170 (244)
+.|.|+|++++.+||+++||+++......+++.+....+..+ +..+.+.... +.. . ..
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~-~~~-~-~~ 62 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG-------------------DSVLMLADEF-PEH-G-SP 62 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC-------------------CEEEEEecCC-ccc-C-CC
Confidence 568999999999999999999998776533443333333322 3355554321 110 0 00
Q ss_pred CCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEEe
Q 026024 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 171 ~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e 233 (244)
.. .+.+..|++|.|+|++++++++.+.|+++..++....++ +.++++|||||.|||.+
T Consensus 63 -~~----~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 63 -AS----WGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred -CC----CCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 00 112456999999999999999999999998887543343 57899999999999986
No 55
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=9.6e-16 Score=117.37 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=78.1
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
+.++.|.|+|+++|++||++ |||++......++ ......+ + ...|.|........
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~------------------~~~l~l~~~~~~~~-- 55 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D------------------NIFVMLLTEDFFQT-- 55 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C------------------ceEEEEEcHHHHhh--
Confidence 35799999999999999976 9999875432222 1111111 1 34555543211000
Q ss_pred CCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEe
Q 026024 168 DFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e 233 (244)
+.........+.+..|++|.|+ |+++++++++++|+++..+|...+++..+||+|||||+|||+.
T Consensus 56 -~~~~~~~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 56 -FTPKPIADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred -ccCCCcccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 0000000011224569999998 6889999999999999888866555556899999999999974
No 56
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=1.1e-15 Score=116.80 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=77.3
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
+++|+.|.|+|++++.+||+++|||++....+ +. .++..+ +..+.+......
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~~----~~~~~~-------------------~~~~~l~~~~~~--- 52 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--KG----AYLEAG-------------------DLWLCLSVDANV--- 52 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--Cc----eEEecC-------------------CEEEEEecCCCC---
Confidence 47899999999999999999999999876532 21 222221 223333221110
Q ss_pred CCCCCCCCCCCCCCcceEEEEEe--CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecC
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~V--dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
.. ..+..|++|.+ +|+++++++++++|+++...+... +..+||+|||||.|||+...
T Consensus 53 ------~~----~~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~~~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 53 ------GP----AKDYTHYAFSVSEEDFASLKEKLRQAGVKEWKENTSE--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred ------CC----CCCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCCCCC--ccEEEEECCCCCEEEEEeCC
Confidence 00 12567999999 589999999999999987655332 34689999999999999753
No 57
>PRK06724 hypothetical protein; Provisional
Probab=99.67 E-value=1.9e-15 Score=117.38 Aligned_cols=111 Identities=16% Similarity=0.183 Sum_probs=75.1
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhcc---CCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~ 161 (244)
..+++||.|.|+|+++|++||+++| |++...... +.. + ...+.|.. +
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~~~-g-------------------~~~l~l~~-~ 54 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------YST-G-------------------ESEIYFKE-V 54 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------eeC-C-------------------CeeEEEec-C
Confidence 4579999999999999999999966 555432111 100 0 12233321 1
Q ss_pred CCCCCCCCCCCCCCCCCCCcceEEEEEe---CCHHHHHHHHHHCCCeEEecCCCCC---cc-eEEEEECCCCCEEEEEec
Q 026024 162 GTESDPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDGGK---LK-GVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 162 ~~~~~~~~~~~~~g~~~p~g~~hi~f~V---dDvd~~~~rl~~~Gv~v~~~p~~g~---~~-~~~~~~DPdG~~IEi~e~ 234 (244)
... ... ..|..|+||.| +|+|+++++++++|+++..+|...+ .+ ..+||+|||||.|||...
T Consensus 55 ~~~-------~~~----~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 55 DEE-------IVR----TLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred Ccc-------ccC----CCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 110 000 12567999998 6899999999999999987664311 23 467899999999999876
Q ss_pred CC
Q 026024 235 KT 236 (244)
Q Consensus 235 ~~ 236 (244)
.+
T Consensus 124 ~~ 125 (128)
T PRK06724 124 PN 125 (128)
T ss_pred CC
Confidence 44
No 58
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.67 E-value=2.4e-15 Score=113.97 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=78.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
-+|+|+.|.|+|++++++||+++|||++..... .+ .++..++. ..+.+.+.. ..
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~----------------~~~~~~~~~---~~- 55 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATGS----------------EHHILRLRR---SD- 55 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCCC----------------ccEEEEecc---CC-
Confidence 368999999999999999999999999875421 22 23332110 022333311 10
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEe---CCHHHHHHHHHHCCCeEEecCC--CCC-cceEEEEECCCCCEEEEEecC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPD--GGK-LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~V---dDvd~~~~rl~~~Gv~v~~~p~--~g~-~~~~~~~~DPdG~~IEi~e~~ 235 (244)
..++.|++|.| +|+++++++++++|+++...+. ..+ .+..+||+||+||.|||+...
T Consensus 56 -------------~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 56 -------------RNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred -------------CCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 01457999999 4799999999999999887652 122 245789999999999998753
No 59
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=2.7e-15 Score=118.36 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=77.8
Q ss_pred EEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 026024 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (244)
Q Consensus 89 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~ 168 (244)
.||.|.|+|++++++||+++|||++..+.. . ...|+...... .++.+.+.. .
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---~--~~~~l~~~~~~---------------~~h~~~~~~----~---- 52 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---D--RIVFMRCHPNP---------------FHHTFAVGP----A---- 52 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---C--EEEEEEcCCCC---------------Ccceeeecc----C----
Confidence 499999999999999999999999887642 1 24555432110 023333311 0
Q ss_pred CCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCC--cceEEEEECCCCCEEEEEecC
Q 026024 169 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 169 ~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~--~~~~~~~~DPdG~~IEi~e~~ 235 (244)
...+++||+|.|+| +++++++|+++|+++...|.... ....+|++|||||.|||.-..
T Consensus 53 ---------~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 53 ---------SSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred ---------CCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 01378999999975 56779999999999887764322 224689999999999998753
No 60
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.66 E-value=2.9e-15 Score=113.93 Aligned_cols=112 Identities=24% Similarity=0.277 Sum_probs=78.5
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
.++++|+.|.|+|++++++||+++|||++..... .+ .++..... ..++.+.+... .
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~---------------~~~~~~~~~~~--~- 57 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEE---------------FIHHSLVLTKA--P- 57 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCC---------------CceEEEEEeeC--C-
Confidence 3689999999999999999999999999876521 12 22321100 00234444211 0
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEe---CCHHHHHHHHHHCCCeEEecCC-CCCc-ceEEEEECCCCCEEEEEec
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPD-GGKL-KGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~V---dDvd~~~~rl~~~Gv~v~~~p~-~g~~-~~~~~~~DPdG~~IEi~e~ 234 (244)
..+..|++|.| +|+++++++++++|+++...|. ..+. +..+|+.|||||.|||+..
T Consensus 58 --------------~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 58 --------------VAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred --------------CCceeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 02568999999 4899999999999999876532 2222 3578999999999999864
No 61
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.66 E-value=1.6e-15 Score=113.73 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=74.6
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~ 169 (244)
|+.|.|+|++++++||+++|||++..+.+ + ..++..+ ...+.+.... ...
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~-------------------~~~l~~~~~~-~~~---- 50 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA-------------------GLWICLMEED-SLQ---- 50 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec-------------------CeEEEeccCC-CcC----
Confidence 89999999999999999999999876532 1 1122211 2344442211 100
Q ss_pred CCCCCCCCCCCcceEEEEEeC--CHHHHHHHHHHCCCeEEecC-CCCCcceEEEEECCCCCEEEEEe
Q 026024 170 KGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKP-DGGKLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 170 ~~~~~g~~~p~g~~hi~f~Vd--Dvd~~~~rl~~~Gv~v~~~p-~~g~~~~~~~~~DPdG~~IEi~e 233 (244)
. ...+..|++|.|+ |+++++++++++|+++.... .....++.+|++|||||+|||+.
T Consensus 51 --~-----~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 51 --G-----PERTYTHIAFQIQSEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred --C-----CCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 0 1125679999994 79999999999999987543 22233467899999999999985
No 62
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=3.8e-15 Score=112.07 Aligned_cols=109 Identities=22% Similarity=0.352 Sum_probs=76.6
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCC
Q 026024 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (244)
Q Consensus 91 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~ 170 (244)
+.|.|+|++++++||+++||+++.... ..+.. +...+ +..+.+........
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~--~~~~~------------------~~~~~l~~~~~~~~----- 52 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFAL--FVLGS------------------GVKLGLWSRHTVEP----- 52 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEE--EEeCC------------------CcEEEEeeccccCC-----
Confidence 679999999999999999999977542 12322 22111 34556643221110
Q ss_pred CCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEE
Q 026024 171 GYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 171 ~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~ 232 (244)
... ...+..|++|.|+| +++++++++++|+++..++....++..++|+|||||.|||+
T Consensus 53 -~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 53 -ASD---ATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVF 113 (114)
T ss_pred -CCC---CCCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEee
Confidence 000 01255799999975 89999999999999998876655556789999999999996
No 63
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.65 E-value=1.8e-15 Score=112.38 Aligned_cols=107 Identities=25% Similarity=0.389 Sum_probs=72.3
Q ss_pred EEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCCC
Q 026024 93 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 172 (244)
Q Consensus 93 L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~~~ 172 (244)
|.|+|++++++||+++|||++....+ .+..+..+... ......+.......
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-------- 51 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRF-----------------HDGVIEFLQFPDPP-------- 51 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEE-----------------EEEEEEEEEEESSS--------
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccch-----------------hhhhHHHccCCccc--------
Confidence 68999999999999999999998432 12222221100 01122333221111
Q ss_pred CCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEE
Q 026024 173 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 232 (244)
Q Consensus 173 ~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~ 232 (244)
..+.+..|++|.|+|+++++++++++|+++..+|....++ ..++++|||||+|||+
T Consensus 52 ----~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 52 ----GPPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp ----SSSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred ----cCCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 0123668999999999999999999999998877554444 6799999999999986
No 64
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.65 E-value=2.9e-15 Score=114.06 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=73.9
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC-C
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES-D 166 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~-~ 166 (244)
|+||.|.|+|+++|++||++ |||++...... ..+ ..+..++ +..+.|........ .
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~--~~~~~~~------------------~~~l~l~~~~~~~~~~ 57 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPH--VEAVLPG------------------GVRLAWDTVESIRSFT 57 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCc--EEEEeCC------------------CEEEEEEcccceeeec
Confidence 57999999999999999975 99998644221 111 1121111 22333321100000 0
Q ss_pred CCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEE
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 232 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~ 232 (244)
+. .. ....+..|++|.|+ |+++++++++++|+++..++...+++ +.++|+|||||+|||+
T Consensus 58 ~~---~~---~~~~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 58 PG---WT---PTGGHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CC---CC---CCCCCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 00 00 01124468889875 89999999999999988877655554 5789999999999996
No 65
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.64 E-value=5.8e-15 Score=111.21 Aligned_cols=106 Identities=19% Similarity=0.315 Sum_probs=71.9
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
+|+|+.|.|.|++++++||+ +|||++..+. + . ..+...+. .+..+.+... ..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~-~--~~~~~~~~-----------------~~~~~~~~~~--~~-- 53 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D-G--LELRTAGN-----------------DHRWARLLEG--AR-- 53 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C-c--eEEEecCC-----------------CceEEEeecC--CC--
Confidence 68999999999999999997 6999987542 1 1 22222111 0233334211 10
Q ss_pred CCCCCCCCCCCCCCcceE--EEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 167 PDFKGYHNGNSEPRGFGH--IGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~h--i~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.+..| +.+.++|+++++++++++|+++...+.... .+.+||+|||||.|||...
T Consensus 54 -------------~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~~~~-~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 54 -------------KRLAYLSFGIFEDDFAAFARHLEAAGVALAAAPPGAD-PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred -------------CceeeEEEEeEhhhHHHHHHHHHHcCCceecCCCcCC-CCEEEEECCCCCEEEEecC
Confidence 02234 455568999999999999999877652222 2358999999999999864
No 66
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=5.1e-15 Score=112.70 Aligned_cols=116 Identities=22% Similarity=0.341 Sum_probs=72.2
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~ 169 (244)
|++|.|+|++++++||+++|||++..... .+ .++... +..+.+...........
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~- 55 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFF-------------------GHQLVAHLSPNFNADAS- 55 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--cccccc-------------------CcEEEEEeccCCCcccc-
Confidence 99999999999999999999999865421 12 112111 22333321111100000
Q ss_pred CCCCCCCCCCCcceEEEE--EeCCHHHHHHHHHHCCCeEEecCCC---CC--cceEEEEECCCCCEEEEEe
Q 026024 170 KGYHNGNSEPRGFGHIGI--TVDDVYKACERFERLGVEFAKKPDG---GK--LKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 170 ~~~~~g~~~p~g~~hi~f--~VdDvd~~~~rl~~~Gv~v~~~p~~---g~--~~~~~~~~DPdG~~IEi~e 233 (244)
.....+ ...+..|++| .++|+++++++|+++|+++..+|.. +. ..+.+|++|||||.|||..
T Consensus 56 ~~~~~~--~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 56 DNAVDG--HPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred cCCCCC--CccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 000001 1124457654 5689999999999999999876632 11 1357899999999999974
No 67
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=9e-15 Score=111.11 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=76.1
Q ss_pred EEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 026024 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (244)
Q Consensus 89 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~ 168 (244)
.|+.|.|+|++++.+||+++||++...+.+ + + ..|...+. ...+.+... ...
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~--~-~~~~~~~~------------------~~~~~~~~~--~~~--- 54 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D--Y-AKFLLEDP------------------RLNFVLNER--PGA--- 54 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C--e-eEEEecCC------------------ceEEEEecC--CCC---
Confidence 499999999999999999999998765531 1 1 12221110 233333221 100
Q ss_pred CCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCC---cceEEEEECCCCCEEEEEec
Q 026024 169 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK---LKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 169 ~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~---~~~~~~~~DPdG~~IEi~e~ 234 (244)
.. .+..|++|.|+| ++++++++.++|+++...+.... ..+.+|++|||||.|||++.
T Consensus 55 ----~~-----~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 55 ----PG-----GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred ----CC-----CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 00 266899999987 88999999999999887664322 13468999999999999985
No 68
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.64 E-value=1.1e-14 Score=108.67 Aligned_cols=108 Identities=24% Similarity=0.331 Sum_probs=76.5
Q ss_pred EEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCC
Q 026024 92 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 171 (244)
Q Consensus 92 ~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~~ 171 (244)
.|.|+|++++++||+++|||++..... ...+ .++..+ +..+.|....... .
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~-------------------~~~~~l~~~~~~~--~---- 53 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG-------------------GAQLMLSEHDGDE--P---- 53 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC-------------------CEEEEEeccCCCC--C----
Confidence 589999999999999999999877642 1222 333321 4556664332111 0
Q ss_pred CCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCe-EEecCCCCCcc-eEEEEECCCCCEEEEEe
Q 026024 172 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVE-FAKKPDGGKLK-GVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 172 ~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~-v~~~p~~g~~~-~~~~~~DPdG~~IEi~e 233 (244)
. ...+..|++|.|+|+++++++++++|++ +..++....++ +.+|++|||||.|||+|
T Consensus 54 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 54 V-----PLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred C-----CCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 0 1124569999999999999999999998 55555443333 57889999999999986
No 69
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=7.5e-15 Score=111.90 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=76.8
Q ss_pred EEEEEEEcCCHHHHHHHHHhc---cCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRV---LGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
++|+.|.|+|++++++||+++ ||+++..+. ...+ +.|...+ ....+.+.......
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~~-~~~~~~~------------------~~~~~~l~~~~~~~ 58 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPGA-VGYGKGG------------------GGPDFWVTKPFDGE 58 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCce-eEeccCC------------------CCceEEEeccccCC
Confidence 579999999999999999999 699887553 1122 2222211 13556664322111
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCC----CcceEEEEECCCCCEEEEE
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGG----KLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g----~~~~~~~~~DPdG~~IEi~ 232 (244)
. .. ..+..||+|.|+| +++++++++++|+++..++... .....+||+|||||.|||+
T Consensus 59 ~------~~-----~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 59 P------AT-----AGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred C------CC-----CCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 0 00 1134699999986 8889999999999988776432 2223689999999999997
No 70
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.64 E-value=9.1e-15 Score=128.21 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=95.2
Q ss_pred ccccccchhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEE
Q 026024 46 TSWFKASNRFRLLSMASSEPKESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFS 125 (244)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~ 125 (244)
.-+++||.++.++-...... .... ..... .......++++|++|.|+|++++++||+++|||++..+...+.+.+.
T Consensus 99 ~~~~~DPdG~~iEl~~~~~~-~~~~--~~~~~-~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~ 174 (294)
T TIGR02295 99 ALRVEDPFGYPIEFYFEMEK-VERL--LRRYH-RHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLA 174 (294)
T ss_pred EEEEECCCCCEEEEEEchhh-cccc--ccccc-ccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEE
Confidence 34679999998883321110 0000 00000 01113568999999999999999999999999998766433333333
Q ss_pred EEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHC
Q 026024 126 LYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERL 202 (244)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~ 202 (244)
..|+..+. .++.+.+... .+ .+++|+||.|+| +++++++|+++
T Consensus 175 ~~~~~~~~-----------------~~~~~~~~~~-------------~~----~~~~Hiaf~v~d~~~v~~~~~~l~~~ 220 (294)
T TIGR02295 175 AAWLHRKG-----------------GVHDIALTNG-------------NG----PRLHHIAYWVHDPLNIIKACDILASA 220 (294)
T ss_pred EEEEecCC-----------------CcCceEeecC-------------CC----CceeeEEEEcCCHHHHHHHHHHHHhC
Confidence 34443211 1233444210 01 277899999998 55678999999
Q ss_pred CCe--EEecCCC-CCc-ceEEEEECCCCCEEEEEecC
Q 026024 203 GVE--FAKKPDG-GKL-KGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 203 Gv~--v~~~p~~-g~~-~~~~~~~DPdG~~IEi~e~~ 235 (244)
|++ +...|.. +.. ..++|++|||||.|||+...
T Consensus 221 G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 221 GLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred CCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 997 5444422 211 23689999999999998743
No 71
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.63 E-value=1e-14 Score=111.10 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=74.1
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~ 169 (244)
...|.|+|++++++||++ |||++..+.. . .+ .++..+ +..++|....... +
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-~~--~~~~~~-------------------~~~l~l~~~~~~~--~-- 55 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQA--A-GY--MILRRG-------------------DLELHFFAHPDLD--P-- 55 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCC--C-CE--EEEEcC-------------------CEEEEEEecCcCC--C--
Confidence 467999999999999999 9999876532 1 23 223321 3466665421110 0
Q ss_pred CCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEE-------ecCCCC-CcceEEEEECCCCCEEEEEec
Q 026024 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA-------KKPDGG-KLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 170 ~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~-------~~p~~g-~~~~~~~~~DPdG~~IEi~e~ 234 (244)
. ....|++|.|+|+++++++|+++|+++. .++... ...+.+||+|||||.|||.|.
T Consensus 56 --~-------~~~~~~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 56 --A-------TSPFGCCLRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred --C-------CCcceEEEEeCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 0 1224899999999999999999999853 233322 233578999999999999984
No 72
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.62 E-value=1.2e-14 Score=106.58 Aligned_cols=111 Identities=29% Similarity=0.377 Sum_probs=81.7
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~ 169 (244)
|+.|.|+|++++.+||+++||+++........ ....++..+ +..+++........
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~-------------------~~~i~l~~~~~~~~---- 55 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG-------------------GTRLELFEGDEPAP---- 55 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC-------------------CceEEEecCCCCCC----
Confidence 88999999999999999999999887754211 233444432 46777765432211
Q ss_pred CCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCC-CCCcceEEEEECCCCCEEEE
Q 026024 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEI 231 (244)
Q Consensus 170 ~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~-~g~~~~~~~~~DPdG~~IEi 231 (244)
. ....+..|++|.|+|+++++++++++|+.+...+. .......+|+.||+||.|||
T Consensus 56 --~----~~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 56 --A----PSGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred --c----ccCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 0 01236689999999999999999999999888764 33334678999999999986
No 73
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.60 E-value=2.9e-14 Score=125.72 Aligned_cols=113 Identities=21% Similarity=0.281 Sum_probs=81.7
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeec-CCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY-EDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~ 163 (244)
.++++|+.|.|+|++++++||+++|||++..+.. . ..++.. ++. .+..+.+... .
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~--~----~~~~~~~~~~----------------~~~~~~l~~~--~ 57 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG--Q----RVYLKAWDEW----------------DHYSVILTEA--D 57 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--c----eEEEEecccc----------------ccceEeeccC--C
Confidence 4789999999999999999999999999876532 1 122321 110 1334444211 0
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCC--CCCcceEEEEECCCCCEEEEEecCC
Q 026024 164 ESDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 164 ~~~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~--~g~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
..|+.|++|.|+ |+++++++|+++|+++...+. ....+..+||+|||||.|||++...
T Consensus 58 ---------------~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 58 ---------------TAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred ---------------CCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 026789999998 799999999999999877653 2223456899999999999998543
No 74
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=2.4e-14 Score=108.39 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=70.4
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCC
Q 026024 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (244)
Q Consensus 91 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~ 170 (244)
..|.|+|++++++||++ |||++..+. ..+ .++..+ +..+.|... ....
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~~--~~l~~~-------------------~~~l~l~~~-~~~~----- 52 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DNL--AYFRLG-------------------NCAFYLQDY-YVKD----- 52 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CCE--EEEEcC-------------------CEEEEeecC-CCcc-----
Confidence 46899999999999987 999998763 122 334332 344444221 1110
Q ss_pred CCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEe-----cCCC-CCcceEEEEECCCCCEEEEEe
Q 026024 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAK-----KPDG-GKLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 171 ~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~-----~p~~-g~~~~~~~~~DPdG~~IEi~e 233 (244)
. .+..+++|.|+|+++++++|+++|+++.. ++.. ..+.+.++|+|||||+|+|.+
T Consensus 53 -~-------~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 53 -W-------AENSMLHLEVDDLEAYYEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred -c-------ccCCEEEEEECCHHHHHHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 0 02248999999999999999999987532 2222 233468999999999999874
No 75
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=6.1e-14 Score=105.96 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=74.8
Q ss_pred EEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCC
Q 026024 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (244)
Q Consensus 91 v~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~ 170 (244)
|.|.|+|++++.+||+++|||++..+. +..+ .++..+ +..+++...........
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~-- 55 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGV--AFFQLG-------------------GLVLALFPREELAKDAG-- 55 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCce--EEEEcC-------------------CeEEEEecchhhhhhcC--
Confidence 689999999999999999999987651 1222 233321 34566543211100000
Q ss_pred CCCCCCCCCCcceEEEEEe---CCHHHHHHHHHHCCCeEEecCCCCCc-ceEEEEECCCCCEEEEEe
Q 026024 171 GYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 171 ~~~~g~~~p~g~~hi~f~V---dDvd~~~~rl~~~Gv~v~~~p~~g~~-~~~~~~~DPdG~~IEi~e 233 (244)
..... ...+..|++|.+ +|+++++++++++|+++..++...++ +..+|++|||||+|||..
T Consensus 56 -~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 56 -VPVPP-PGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred -CCCCC-CCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 00000 111334676665 58999999999999999877754443 457899999999999975
No 76
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.57 E-value=8.1e-14 Score=122.19 Aligned_cols=112 Identities=24% Similarity=0.325 Sum_probs=80.3
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
..+++|+.|.|+|++++++||+++|||++..+.. . ..++...... ....+.+... .
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~--~~~~~~~~~~---------------~~~~l~l~~~--~- 57 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----E--YIYLRGIEEF---------------QHHSLVLTKA--P- 57 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----C--eEEEeccCcC---------------CceEEEeeeC--C-
Confidence 3679999999999999999999999999876532 1 1223211100 0233444321 0
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecC
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
..+..|++|.|+ |+++++++|+++|+++...+..+. ...+||+|||||.|||+...
T Consensus 58 --------------~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~-~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 58 --------------SAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGGQ-PEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred --------------CcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCCC-ceEEEEECCCCCEEEEEEch
Confidence 015679999997 799999999999999887653322 36789999999999999843
No 77
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.3e-14 Score=117.43 Aligned_cols=120 Identities=37% Similarity=0.619 Sum_probs=99.5
Q ss_pred CceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCC-----------CcEEEEEeecCCCCCCCCCCccceeeecCCC
Q 026024 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKP 152 (244)
Q Consensus 84 ~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (244)
..-++-|+.+.|.|.++++.||+++|||++.+..++++ ++|.-.|+|++.+. .|
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEd---------------sh 78 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPED---------------SH 78 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCc---------------cc
Confidence 34577899999999999999999999999998887776 78888899986432 28
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEE
Q 026024 153 ATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 153 ~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~ 232 (244)
..+||+.+.+... |..|+ +|.||.+.++|+-...+.++..|.+ +....+++++||||+.++|+
T Consensus 79 FViELTYNYgV~~------YelGn----dfg~i~I~s~dv~~~ve~v~~p~~~-------~~g~~~~~v~dPdGykF~l~ 141 (299)
T KOG2943|consen 79 FVIELTYNYGVSK------YELGN----DFGGITIASDDVFSKVEKVNAPGGK-------GSGCGIAFVKDPDGYKFYLI 141 (299)
T ss_pred EEEEEEeccCccc------eeccC----CcccEEEeHHHHHHHHHHhcCcCCc-------ccceEEEEEECCCCcEEEEe
Confidence 9999999988765 88888 9999999999998888887776642 22234689999999999999
Q ss_pred ecC
Q 026024 233 DLK 235 (244)
Q Consensus 233 e~~ 235 (244)
++.
T Consensus 142 ~~~ 144 (299)
T KOG2943|consen 142 DRG 144 (299)
T ss_pred ccC
Confidence 853
No 78
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.53 E-value=1.7e-13 Score=119.92 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=79.1
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
.+++|+.|.|+|++++++||+++|||++..+.. .+ ..|+..+. .+..+.+... ..
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~-----------------~~~~~~l~~~--~~- 56 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDS-----------------RAHRIAVHPG--ES- 56 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCC-----------------CceEEEEEEC--Cc-
Confidence 478999999999999999999999999765421 11 12333221 1344544321 10
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCC----CCCcceEEEEECCCCCEEEEEec
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPD----GGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~----~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.++.|++|.|+| ++++.++|+++|+++...+. ....+..+||+|||||.|||+..
T Consensus 57 --------------~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 57 --------------DDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred --------------CCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 155799999998 89999999999999887552 11223578999999999999974
No 79
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.49 E-value=1.3e-12 Score=100.47 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=85.1
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
.-.+.|..|.|.|++++++||++|||+++....+..+..+ +.+..++.. -+.. |.....
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~~---------------~gG~--l~~~~~-- 65 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGAG---------------AGGG--LMARPG-- 65 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCcc---------------ccce--eccCCc--
Confidence 3457899999999999999999999999988765433333 333222110 0111 111100
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCC-cceEEEEECCCCCEEEEEecC
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~-~~~~~~~~DPdG~~IEi~e~~ 235 (244)
...+ .+..++.|.|+|+++..+|++++|.+++.++..-+ .++++.+.||+||+|-|.+..
T Consensus 66 -------~~p~----~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 66 -------SPPG----GGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred -------CCCC----CCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 1111 13458999999999999999999999999987755 677889999999999999864
No 80
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.49 E-value=1.9e-13 Score=102.80 Aligned_cols=97 Identities=26% Similarity=0.348 Sum_probs=72.6
Q ss_pred EEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 026024 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (244)
Q Consensus 89 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~ 168 (244)
+||+|.|+|++++++||+++||++.......+.......++..++. ...|||+++..... .
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~iELi~p~~~~~--~ 61 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG-----------------PVQIELIQPLDGDS--P 61 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE-----------------TEEEEEEEESSTTC--H
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC-----------------cEEEEEEEeCCCCc--c
Confidence 6999999999999999999999998776655555555555554321 26899988654331 0
Q ss_pred CCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecC
Q 026024 169 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (244)
Q Consensus 169 ~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p 210 (244)
. ... ..|++||||.|+|++++.++|+++|+++...+
T Consensus 62 ~--~~~----~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 62 L--DRG----GGGIHHIAFEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp H--HHT----SSEEEEEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred c--ccC----CCCEEEEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence 0 012 24999999999999999999999999988754
No 81
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.44 E-value=2.2e-12 Score=109.62 Aligned_cols=121 Identities=18% Similarity=0.334 Sum_probs=88.5
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 026024 82 ATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (244)
Q Consensus 82 ~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~ 161 (244)
.+..+.++.+.|.|+|++.+..||+++||+++..+.+. ...++.++ ...|.|.+..
T Consensus 5 ~~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg------------------~~LL~L~q~~ 60 (265)
T COG2514 5 LTTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG------------------TPLLTLEQFP 60 (265)
T ss_pred cCCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC------------------EEEEEEEeCC
Confidence 35678999999999999999999999999999987531 23344332 3466665533
Q ss_pred CCCCCCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCC
Q 026024 162 GTESDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 162 ~~~~~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
.....+ +...|+.|++|.++ |+..+..++.+.|+.+.. ..+......+|+.||+||.|||+..+.
T Consensus 61 ~a~~~~---------~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~G-a~DH~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 61 DARRPP---------PRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVG-ASDHLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred CCCCCC---------ccccceeeeeeecCCHHHHHHHHHHHHhcCCcccc-cCcchhheeeeecCCCCCeEEEEecCC
Confidence 322111 11138899999998 688889999999998763 333444557999999999999998643
No 82
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.39 E-value=5.2e-12 Score=104.60 Aligned_cols=104 Identities=23% Similarity=0.395 Sum_probs=71.8
Q ss_pred eEEEEEEEEcC--CHHHHHHHHHhccCCEEEEeeeCCC--CcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 026024 86 YFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (244)
Q Consensus 86 ~~l~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~ 161 (244)
.+++|+++.|+ |++++++||+++|||+.......++ ......++.... +...|+|.+..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~-----------------g~i~l~L~~~~ 64 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD-----------------GKIRIPLNEPA 64 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC-----------------CcEEEEEecCC
Confidence 36899999999 9999999999999999887765332 223333443321 14667776533
Q ss_pred CCCCCCC---CCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecC
Q 026024 162 GTESDPD---FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (244)
Q Consensus 162 ~~~~~~~---~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p 210 (244)
....... +.....| .|++||||.|+|+++++++|+++|+++...|
T Consensus 65 ~~~~~s~~~~fl~~~~G----~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 65 SGKRKSQIQEFLEYYGG----AGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCCCccHHHHHHHHhCC----CceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 2101000 0001122 3889999999999999999999999998776
No 83
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.29 E-value=5e-11 Score=88.63 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=79.5
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
+.+-|++|.|.|++++++||.++||++.-...+ .| +.|--++. +..+.+........
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd----~w-vdfDfyGH------------------Q~v~Hl~~q~~~~~ 59 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD----TW-VDFDFYGH------------------QVVAHLTPQPDSQG 59 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc----eE-EEeeeccc------------------EEEEEecCCccccc
Confidence 456799999999999999999999998765532 12 22211211 23333322211111
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCC---CCCcc--eEEEEECCCCCEEEEEecCCCCCC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD---GGKLK--GVAFIKDPDDYWIEIFDLKTIGKI 240 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~---~g~~~--~~~~~~DPdG~~IEi~e~~~~~~~ 240 (244)
+.. . .+...+....-+.|.++|--++.+||+++|+.+..+|. .|..+ +.+|+.||.||.+|+-.-....++
T Consensus 60 ~g~---V-~~~~v~~pHfGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~e~v 135 (138)
T COG3565 60 SGK---V-DGHGVPPPHFGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQEQV 135 (138)
T ss_pred Ccc---c-CCCCCCCccceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccchhhh
Confidence 111 1 11111111123456667999999999999999887773 12222 357889999999999876666554
Q ss_pred C
Q 026024 241 G 241 (244)
Q Consensus 241 ~ 241 (244)
.
T Consensus 136 F 136 (138)
T COG3565 136 F 136 (138)
T ss_pred h
Confidence 3
No 84
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.28 E-value=2.4e-11 Score=91.40 Aligned_cols=131 Identities=24% Similarity=0.326 Sum_probs=75.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCc---EEEEEeecCCCCCCCCCCccceeeecCCC-cEEEEeecC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK---FSLYFLGYEDTASAPADPVDRTVWTFGKP-ATIELTHNW 161 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~leL~~~~ 161 (244)
++++|++|.|+|++++++||+++|||++.......... ....+....... . . .+..... ...+.....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-----~~~~~~~~~~~~~~~~~ 72 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGP--G-E-----LLAFFGFEGRAGTGFVG 72 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCc--c-c-----ceeeccccccccccccc
Confidence 47899999999999999999999999999875432221 112222211000 0 0 0000000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEe
Q 026024 162 GTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 162 ~~~~~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e 233 (244)
.. ......+. .+..|+++.++| ...........|..+..... ...+..+|++||||+.|||++
T Consensus 73 -~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 73 -DV----ALGVPGGD---LGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred -ce----EEeecCch---hccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcceEEEEECCCCcEEEeeC
Confidence 00 00000000 145799999998 67777777788888766543 333347999999999999974
No 85
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.13 E-value=8.7e-10 Score=99.59 Aligned_cols=105 Identities=18% Similarity=0.359 Sum_probs=70.7
Q ss_pred ceEEEEEEEEcC--CHHHHHHHHHhccCCEEEEeeeCCC--CcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeec
Q 026024 85 GYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (244)
Q Consensus 85 ~~~l~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~ 160 (244)
..+++|++|.|. |+++++.||+++|||++..+.+... .......+... .+...|+|.++
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~-----------------~g~~~i~L~ep 218 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP-----------------DGKVKIPLNEP 218 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC-----------------CCcEEEEEecc
Confidence 457999999999 9999999999999999887654321 11111112111 12466777653
Q ss_pred CCCCCCCC---CCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecC
Q 026024 161 WGTESDPD---FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (244)
Q Consensus 161 ~~~~~~~~---~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p 210 (244)
........ +.....| .|++||||.|+|+++++++|+++|+++...|
T Consensus 219 ~~~~~~s~i~~fl~~~~g----~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 219 ASGKDKSQIEEFLEFYNG----AGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred CCCCCCCHHHHHHHHcCC----CCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 21111110 1012223 3889999999999999999999999998776
No 86
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.12 E-value=6.9e-10 Score=83.83 Aligned_cols=122 Identities=17% Similarity=0.204 Sum_probs=74.3
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~ 166 (244)
++.-|.|+|+|++++.+||+. |||+......... . ..++-. ....+.|+....=..
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~-a--~~mi~~-------------------~ni~vMLL~~~~fq~- 58 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED-A--ACMIIS-------------------DNIFVMLLEEARFQT- 58 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc-c--eeEEEe-------------------ccEEEEEeccHHhhh-
Confidence 456789999999999999965 9999876654221 1 111111 133444433211000
Q ss_pred CCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCC-CCcceEEEEECCCCCEEEEEecC
Q 026024 167 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 167 ~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~-g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
+.....+......-.-++|.++ ++|++.++..+.|.+...++.+ +.+.+ .-|+|||||.||++-.+
T Consensus 59 --F~~~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg-~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 59 --FTKRQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYG-RSFQDPDGHVWEFLWMD 128 (133)
T ss_pred --hcccccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccc-eeeeCCCCCeEEEEEeC
Confidence 0000011111112347888886 6999999999999999877754 33322 34699999999998654
No 87
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.12 E-value=4e-09 Score=81.42 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=69.9
Q ss_pred EEEEc-CCHHHHHHHHHhccCCEEEEeeeCCCC----------cEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEee
Q 026024 91 TMFRI-KDPKVSLDFYSRVLGMSLLKRLDFPEM----------KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (244)
Q Consensus 91 v~L~V-~Dle~a~~FY~~vLG~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~ 159 (244)
..|.+ .|.++|++||+++||+++......++. ......+.. .+..|.+..
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i-------------------~g~~l~~~d 63 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTI-------------------GGQRLMASD 63 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEE-------------------CCEEEEEEc
Confidence 45777 999999999999999999877542211 111111111 133444432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcceEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEE
Q 026024 160 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEI 231 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi 231 (244)
.. ... . .. +.+..++++.|+| +++++++|++.| ++..++...+++ +.++++||+|+.|+|
T Consensus 64 ~~-~~~-~----~~-----~~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 64 GG-PGF-P----FT-----FGNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQI 127 (128)
T ss_pred CC-CCC-C----CC-----CCCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEe
Confidence 21 110 0 00 1123589999986 778889987766 777777554444 468899999999997
No 88
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.10 E-value=2.9e-09 Score=96.18 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=80.1
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
+.++|+.|.|+|++++++||++.|||++.......... ....+.. +...|+|........
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~-------------------G~~~l~L~~~~~~~s 60 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ-------------------GQINFVLTAPYSSDS 60 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe-------------------CCEEEEEecCCCCCc
Confidence 46899999999999999999999999988762211221 1122221 146777764322210
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCC--CcceEEEEECCCCCEEEEEecC
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g--~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
+ ...+.. ..+.|..|++|.|+|+++++++++++|+++..+|... ....+.-++-++|..+-|+++.
T Consensus 61 -~-~~~~~~--~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~ 128 (353)
T TIGR01263 61 -P-AADFAA--KHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRG 128 (353)
T ss_pred -h-HHHHHH--hCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCC
Confidence 0 000100 0123789999999999999999999999998877432 1112233455666666666643
No 89
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=4.9e-10 Score=93.48 Aligned_cols=120 Identities=28% Similarity=0.463 Sum_probs=88.2
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~ 167 (244)
+.+|.|.|.|+++|++||.+.|||++... +..++...++|++. ...|||..+.+...
T Consensus 150 v~~V~l~VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~-----------------q~~LElt~~~~~id-- 206 (299)
T KOG2943|consen 150 VLQVMLNVGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE-----------------QCVLELTYNYDVID-- 206 (299)
T ss_pred eEEEEEEehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc-----------------ceEEEEEeccCccc--
Confidence 56899999999999999999999999875 22345678888764 58899987755432
Q ss_pred CCCCCCCCCCCCCcceEEEEEe--CCHHHHHHHHHHCCCeEEecC----CCCCcc-eEEEEECCCCCEEEEEecCCCCCC
Q 026024 168 DFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKP----DGGKLK-GVAFIKDPDDYWIEIFDLKTIGKI 240 (244)
Q Consensus 168 ~~~~~~~g~~~p~g~~hi~f~V--dDvd~~~~rl~~~Gv~v~~~p----~~g~~~-~~~~~~DPdG~~IEi~e~~~~~~~ 240 (244)
+.. |+..++|.+ +|+..+.+.++..+.++..+. ..+... .++-+.||||+.|.|+....+.++
T Consensus 207 ----~~k------g~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~l 276 (299)
T KOG2943|consen 207 ----RAK------GFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKL 276 (299)
T ss_pred ----ccc------cceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHH
Confidence 222 556677766 588888888888866655443 223222 366789999999999998776554
No 90
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=1.5e-08 Score=79.17 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=80.2
Q ss_pred EEEEcC-CHHHHHHHHHhccCCEEEEeeeCCCC----------cEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEee
Q 026024 91 TMFRIK-DPKVSLDFYSRVLGMSLLKRLDFPEM----------KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (244)
Q Consensus 91 v~L~V~-Dle~a~~FY~~vLG~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~ 159 (244)
.-|.++ |-++|++||+++||.+++.+...++. .....-+..+ +..|.+..
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~-------------------g~~im~sd 64 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG-------------------GSTIMLSD 64 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC-------------------CEEEEEec
Confidence 457788 99999999999999999988776552 2222222221 23333322
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEEecCC
Q 026024 160 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e~~~ 236 (244)
...... ...++ ..-.-|.+.++|++++++++.+.|+++..++.+..++ +...++||.|+.|-|.....
T Consensus 65 ~~~~~~------~~~~~---~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 65 AFPDMG------ATEGG---GTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred CCCccC------cccCC---CeeEEEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCcc
Confidence 211110 11121 1224678888899999999999999999998776655 46679999999999987654
No 91
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=93.17 Aligned_cols=138 Identities=16% Similarity=0.266 Sum_probs=89.0
Q ss_pred cccccccccchhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCC
Q 026024 43 KTTTSWFKASNRFRLLSMASSEPKESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM 122 (244)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~ 122 (244)
+-..+|.++.+++.|.+...+.+....... .......+.+..|+||.|.|.|++++.+||+++|||++..+. +.
T Consensus 127 rp~~~W~~~~~~v~m~t~~ld~~~ll~~~~---~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~--~~- 200 (265)
T COG2514 127 RPRSTWDWQNDQVKMDTEPLDVEALLEEAT---KEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG--PS- 200 (265)
T ss_pred CChHHhcccCCeeeecccccCHHHHhhhcc---ccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC--Cc-
Confidence 556678787777777766655544333221 222244567899999999999999999999999999999872 22
Q ss_pred cEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHC
Q 026024 123 KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERL 202 (244)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~ 202 (244)
..|+..++. ++.|.+ ..|...... .++....|+..+.+.+++-........
T Consensus 201 ---A~F~a~G~Y-----------------HHHia~-N~W~s~~~~------~~~~~~~GLa~~~i~~~~~~~l~~~~~-- 251 (265)
T COG2514 201 ---ALFLASGDY-----------------HHHLAA-NTWNSRGAR------PRNANASGLAWLEIHTPDPEKLDATGT-- 251 (265)
T ss_pred ---ceEEecCCc-----------------ceeEEE-eccccCCCC------CCCCCCCCcceEEEEcCCccccccccc--
Confidence 356666554 566666 445544321 111222477888888877332211110
Q ss_pred CCeEEecCCCCCcceEEEEECCCCCEEEEE
Q 026024 203 GVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 203 Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~ 232 (244)
..+||+|+.|.++
T Consensus 252 -----------------~~~Dp~G~~i~~~ 264 (265)
T COG2514 252 -----------------RLTDPWGIVIRVV 264 (265)
T ss_pred -----------------ceecCCCceEEEe
Confidence 0189999999875
No 92
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.89 E-value=4.5e-09 Score=95.69 Aligned_cols=105 Identities=11% Similarity=0.242 Sum_probs=72.6
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCC-----cEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEee
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-----KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~ 159 (244)
-.+|+|+++.|.|+++++.||+++|||+.....+.++. .....++..++ +...|+|.+
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~-----------------g~v~ipLnE 240 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN-----------------EMVLLPLNE 240 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC-----------------CcEEEEecc
Confidence 34799999999999999999999999998865543221 12333343221 246778866
Q ss_pred cCCC--CCC--CCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHC----CCeEEecC
Q 026024 160 NWGT--ESD--PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERL----GVEFAKKP 210 (244)
Q Consensus 160 ~~~~--~~~--~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~----Gv~v~~~p 210 (244)
+... ... ..+-....| .|++||+|.|+|+.++.++|+++ |++++..|
T Consensus 241 P~~~~~~~SqI~eFL~~~~G----~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 241 PTFGTKRKSQIQTYLEHNEG----PGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred CCCCCCCcChHHHHHHhcCC----CCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 4321 111 111112222 39999999999999999999999 99999854
No 93
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.72 E-value=7.2e-08 Score=85.51 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=69.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
-++.||+|.|+|+++|++||+++||+.. .. ++. .. .++ + ...+.+.....+.
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~-a~-cm~--d------------------tI~vMllt~~D~~- 297 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDK-LF-LLG--K------------------TSLYLQQTKAEKK- 297 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCc-cc-ccc--C------------------cEEEEEecCCCCC-
Confidence 4566999999999999999999988874 22 111 11 111 1 1222222111110
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 166 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 166 ~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
. ..-.-+|+.++ ++|++.+++.++|.....++.+...+ --|.|||||.||++-.
T Consensus 298 -------~------~~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~--rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 298 -------N------RGTTTLSLELECEHDFVRFLRRWEMLGGELGEQADGHFPL--RLVFDLDGHIWVVSCV 354 (357)
T ss_pred -------C------cceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCcccccCc--ceeECCCCCEEEEEEE
Confidence 0 12247899997 69999999999999776666543332 3468999999999853
No 94
>PRK10148 hypothetical protein; Provisional
Probab=98.32 E-value=5.9e-05 Score=59.87 Aligned_cols=51 Identities=10% Similarity=-0.083 Sum_probs=40.4
Q ss_pred eEEEEEeCCHHH---HHHHHHHCCCeEEecCCCCCcc-eEEEEECCCCCEEEEEec
Q 026024 183 GHIGITVDDVYK---ACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 183 ~hi~f~VdDvd~---~~~rl~~~Gv~v~~~p~~g~~~-~~~~~~DPdG~~IEi~e~ 234 (244)
.+|++.++|.++ ++++| +.|.++..++.+..++ ++..++||.|+.|.|...
T Consensus 87 ~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 87 FTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred EEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 488888888876 55655 6889999888766665 467899999999999775
No 95
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.27 E-value=3.8e-06 Score=68.35 Aligned_cols=125 Identities=17% Similarity=0.243 Sum_probs=62.1
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcE--EEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF--SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~ 165 (244)
|+|+.+.|+|++++.++|++.|||.+......+..+. .+++++ ...|||+.......
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~---------------------~~YlEli~i~~~~~ 59 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG---------------------DGYLELIAIDPEAP 59 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S---------------------SSEEEEEEES-HHH
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC---------------------CceEEEEEeCCccc
Confidence 6899999999999999999999999997766554222 233332 34999987422211
Q ss_pred CCCCCCCCCCC---CCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecC-CCC-Cc-ceEEEEECC----CCCEEEEEec
Q 026024 166 DPDFKGYHNGN---SEPRGFGHIGITVDDVYKACERFERLGVEFAKKP-DGG-KL-KGVAFIKDP----DDYWIEIFDL 234 (244)
Q Consensus 166 ~~~~~~~~~g~---~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p-~~g-~~-~~~~~~~DP----dG~~IEi~e~ 234 (244)
.+... ...+. ....|+.++||.++|+++..+++++.|+...... .+| .. ...+++.|. .+..-++++.
T Consensus 60 ~~~~~-~~~~~~~~~~~~g~~~~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~ 137 (175)
T PF13468_consen 60 APDRG-RWFGLDRLAGGEGLYGWALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQW 137 (175)
T ss_dssp STGGG-T-TTTHHHHT--EEEEEEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEE
T ss_pred ccccc-cceechhhcCCCCeEEEEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEe
Confidence 11000 11000 0234889999999999999999999998622111 011 11 135666664 2455566653
No 96
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.24 E-value=3.7e-05 Score=58.07 Aligned_cols=119 Identities=19% Similarity=0.295 Sum_probs=63.6
Q ss_pred EEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 026024 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (244)
Q Consensus 89 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~~~~~ 168 (244)
.+-.|+|+|=+..++||+++|||++..+.. .++.+|... +...+.|-+.+....
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~-----------------~~erlvlEESP~~rt--- 55 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQ-----------------KEERLVLEESPSMRT--- 55 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT-------------------EEEEEEE--TTT----
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCC-----------------CceEEEEecCCcccc---
Confidence 467899999999999999999999998742 245566421 134555544322210
Q ss_pred CCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCCCCCC
Q 026024 169 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGKI 240 (244)
Q Consensus 169 ~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~~~~~ 240 (244)
.... .+--++++-+.|++.+++ +.|.++|.++...- .|..+..+-+.+|.|+.|.|....++..+
T Consensus 56 ---r~V~--G~KKl~~ivIkv~~~~EI-e~LLar~~~~~~l~-kg~~gyAfe~vSPEgd~~llhaEdd~~~L 120 (125)
T PF14506_consen 56 ---RAVE--GPKKLNRIVIKVPNPKEI-EALLARGAQYDRLY-KGKNGYAFEAVSPEGDRFLLHAEDDISDL 120 (125)
T ss_dssp ---B--S--SS-SEEEEEEEESSHHHH-HHHHHC-S--SEEE-E-SSSEEEEEE-TT--EEEEE--S-GGG-
T ss_pred ---cccc--CcceeeEEEEEcCCHHHH-HHHHhcccccceeE-EcCCceEEEEECCCCCEEEEEEcCCHhHc
Confidence 1111 112567999999986664 44556665533222 23333345578999999999987766544
No 97
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.21 E-value=4.1e-06 Score=74.07 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=69.1
Q ss_pred CceEEEEEEEEcC--CHHHHHHHHHhccCCEEEEeeeCCCCcE---EEEEeecCCCCCCCCCCccceeeecCCCcEEEEe
Q 026024 84 NGYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKF---SLYFLGYEDTASAPADPVDRTVWTFGKPATIELT 158 (244)
Q Consensus 84 ~~~~l~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~ 158 (244)
+.+.|+|+...|+ .++....||+++|||+.....+.++... .-++...+ +...|-|-
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~------------------G~vrlplN 225 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPC------------------GKVRLPLN 225 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCC------------------CcEEeecc
Confidence 3468999987766 9999999999999999998877653221 11111111 13344442
Q ss_pred ecCCCCC-CCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCC
Q 026024 159 HNWGTES-DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 211 (244)
Q Consensus 159 ~~~~~~~-~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~ 211 (244)
....... ...+-....| .|++||+|.++|+.++.++++++|+++...|.
T Consensus 226 ~s~~~~sqi~efl~~y~G----~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 226 ESADDKSQIGEFLREYRG----EGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred cCCCchhHHHHHHHHhCC----CcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 2111110 0111111122 48999999999999999999999999998773
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.00 E-value=0.00014 Score=66.52 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=82.0
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCC--cEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC-
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM--KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE- 164 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~- 164 (244)
++||.+.|.|.+++..||+..|||+.+.......+ ......+.. +...+.+.....+.
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~-------------------g~i~fv~~~~~~~~~ 61 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRS-------------------GDLVFLFTAPYSPKI 61 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEe-------------------CCEEEEEeCCCCCcc
Confidence 58999999999999999999999998876542111 122222321 13344443321110
Q ss_pred -C--CCCCCC-----CCCC------CCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCC-C---c--ceEEEEECC
Q 026024 165 -S--DPDFKG-----YHNG------NSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-K---L--KGVAFIKDP 224 (244)
Q Consensus 165 -~--~~~~~~-----~~~g------~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g-~---~--~~~~~~~DP 224 (244)
. +....+ +... ...+.|..-++|+|+|++++++++.++|.+...++... . . ..+.-++-+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~ 141 (398)
T PLN02875 62 GAGDDDPASTAPHPSFSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELY 141 (398)
T ss_pred ccccccccccccccccCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEcc
Confidence 0 000000 0000 00123777899999999999999999999998876431 1 1 134557888
Q ss_pred CCCEEEEEecCCCCC
Q 026024 225 DDYWIEIFDLKTIGK 239 (244)
Q Consensus 225 dG~~IEi~e~~~~~~ 239 (244)
+|..+-|+++.....
T Consensus 142 G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 142 GDVVLRYVSYKGFDG 156 (398)
T ss_pred CCcEEEEEccCCCCC
Confidence 889999998765443
No 99
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.87 E-value=4.4e-05 Score=66.65 Aligned_cols=130 Identities=12% Similarity=0.174 Sum_probs=76.7
Q ss_pred CceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCC--CcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 026024 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (244)
Q Consensus 84 ~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~ 161 (244)
...+++||.+.|.|...+..||+..|||+......... ..+.-..+.. +....-+....
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~-------------------g~~vFv~~s~~ 74 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQ-------------------GKIVFVFNSAY 74 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhc-------------------CCEEEEEecCC
Confidence 35789999999999999999999999999876442221 1111111110 11222222221
Q ss_pred CCCCCCCCC--CCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCC---CC-cceEEEEECCCCCEEEEEecC
Q 026024 162 GTESDPDFK--GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG---GK-LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 162 ~~~~~~~~~--~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~---g~-~~~~~~~~DPdG~~IEi~e~~ 235 (244)
++.. +.+. -...|. |..-+||+|+|++++...+.++|+.+..+|.. .. .-+++.++.+.-....++|++
T Consensus 75 ~p~~-~~~G~~l~~Hgd----gvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~ 149 (381)
T KOG0638|consen 75 NPDN-SEYGDHLVKHGD----GVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERK 149 (381)
T ss_pred CCCc-hhhhhhhhhccc----chhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhc
Confidence 1111 0000 011222 56689999999999999999999999888732 11 113455666654455555554
Q ss_pred CC
Q 026024 236 TI 237 (244)
Q Consensus 236 ~~ 237 (244)
..
T Consensus 150 ~y 151 (381)
T KOG0638|consen 150 GY 151 (381)
T ss_pred cc
Confidence 43
No 100
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.67 E-value=0.0017 Score=50.98 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=73.4
Q ss_pred CceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 026024 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (244)
Q Consensus 84 ~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~ 163 (244)
+...+.||.+.|.|.++...|+ +.|||+.+.+.. .....++-. +...+.|...+..
T Consensus 6 g~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hr--sk~v~l~rQ---------------------G~I~~vln~ep~s 61 (139)
T PF14696_consen 6 GLDGFDFVEFAVPDAQALAQLF-TALGFQPVARHR--SKDVTLYRQ---------------------GDINFVLNSEPDS 61 (139)
T ss_dssp -EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCEC--CCSEEEEEE---------------------TTEEEEEEEESTS
T ss_pred CCCCeEEEEEecCCHHHHHHHH-HHhCcceEEecC--CcceEEEEe---------------------CCEEEEEeCCCcc
Confidence 4567999999999977777777 679999987753 222222211 1344545332111
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCCC
Q 026024 164 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 237 (244)
Q Consensus 164 ~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~~ 237 (244)
.. ..+. ...| .+..-++|.|+|.+++++++.++|.+....+....--.+.-|+-+.|-++-|+++...
T Consensus 62 ~a-~~~~-~~HG----~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 62 FA-AEFA-AQHG----PSVCAIAFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp CH-HHHH-HHHS----SEEEEEEEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE--SS
T ss_pred hH-HHHH-HhcC----CEEEEEEEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEecCCC
Confidence 00 0000 0112 2777899999999999999999999988776322223456689999999999998653
No 101
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0012 Score=57.77 Aligned_cols=135 Identities=18% Similarity=0.280 Sum_probs=82.2
Q ss_pred CCceEEEEEEEEcC--CHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceee-ecCCCcEEEEee
Q 026024 83 TNGYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVW-TFGKPATIELTH 159 (244)
Q Consensus 83 ~~~~~l~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~leL~~ 159 (244)
...-+++|+...++ .++.++.||.+.|||.-.+..+.+.-.. -+- ....| ..+....|.+.-
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~t--e~S-------------aLrs~vlan~~esi~mpi 238 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHT--EYS-------------ALRSIVLANYEESIKMPI 238 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhh--HHH-------------HHHHHHHhcCCccEEEec
Confidence 44567999999999 7889999999999998776654221110 000 00011 111123333322
Q ss_pred cCCCCCC------CCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCC-----------------c-
Q 026024 160 NWGTESD------PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-----------------L- 215 (244)
Q Consensus 160 ~~~~~~~------~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~-----------------~- 215 (244)
+....+. ..+..|+.| .|.+||++.++|+-.+.+.++++|+++..+|.... .
T Consensus 239 nEp~~G~k~ksQIqeyv~y~gG----~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~ 314 (381)
T KOG0638|consen 239 NEPAPGKKKKSQIQEYVEYHGG----AGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIK 314 (381)
T ss_pred cCCCCCCccHHHHHHHHHhcCC----CceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHH
Confidence 2111110 112224444 39999999999999999999999999998773100 0
Q ss_pred ----ceEEEEECCCCCEEEEEecCC
Q 026024 216 ----KGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 216 ----~~~~~~~DPdG~~IEi~e~~~ 236 (244)
-++..=.|-.|+++.|+...-
T Consensus 315 ~l~el~ILvD~De~gyLLQIFTKpl 339 (381)
T KOG0638|consen 315 LLEELGILVDFDENGYLLQIFTKPL 339 (381)
T ss_pred HHHHcCeEEecCCCcEEeeeecccc
Confidence 123333577799999987643
No 102
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.72 E-value=0.085 Score=40.02 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=28.9
Q ss_pred eEEEEEeCC---HHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEE
Q 026024 183 GHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 183 ~hi~f~VdD---vd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~ 232 (244)
..|++.++| +++++++|.+.|- +...+..++|..|..|.|+
T Consensus 73 ~sl~i~~~~~ee~~~~f~~Ls~gG~---------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 73 ISLCIECDDEEEIDRIFDKLSEGGQ---------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTTE---------TCCEEEEEE-TTS-EEEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHcCCC---------ccceeEEEEeCCCCEEEeC
Confidence 488899986 5567788877775 2234567999999999885
No 103
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.99 E-value=0.02 Score=42.47 Aligned_cols=55 Identities=27% Similarity=0.244 Sum_probs=40.4
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEEecCCC-CCcceEEEEECCCC-CEEEEEecCCC
Q 026024 183 GHIGITVDDVYKACERFER-LGVEFAKKPDG-GKLKGVAFIKDPDD-YWIEIFDLKTI 237 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~-g~~~~~~~~~DPdG-~~IEi~e~~~~ 237 (244)
+|++|.|+|++++.+.+.+ .|+........ ....+..++..++| ..|||+++..-
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~ 58 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDG 58 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESST
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCC
Confidence 5999999999999999998 89876543321 22224566788888 68999997653
No 104
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.91 E-value=0.038 Score=40.80 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=42.3
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
.+.+..+.|.|.| +++..||+++||-++ ...|.+.+..|+.
T Consensus 3 ~F~~e~i~LNV~d-~~~~~fy~~~f~~~~--------------------------------------~~~l~f~ea~G~D 43 (101)
T PF14507_consen 3 QFEFESIELNVPD-AKSQSFYQSIFGGQL--------------------------------------PFFLTFQEAQGPD 43 (101)
T ss_dssp SEEE-EEEEEE-T--T---S--H---HHH--------------------------------------TTTEEEEE---CC
T ss_pred ceEEEEEEEeCCC-hhHHHHHHhccccCC--------------------------------------CceEEEeeccCCc
Confidence 3678889999999 889999999986211 1122332222211
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEE
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 229 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~I 229 (244)
....+....++-.+-|.|+ |+.++.+++.+.++ ++..- ..++.+.||.|..|
T Consensus 44 -------L~~~~~~twDLe~Lkf~V~~~~Dl~~L~~~le~~~~-fidKk-----~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 44 -------LTIENNETWDLEMLKFQVPKDFDLAALKSHLEEQEF-FIDKK-----EKFLVTSDPSQIEL 98 (101)
T ss_dssp -------GSS-TTSBSSEEEEEEEES-S--HHHHHHHTTTS-E-E--TT------SEEEEE-TTS-EE
T ss_pred -------cccCCCcEEeeEEEEEEecCcccHHHHHHHhcccce-EecCC-----ceEEEEECCcceEE
Confidence 1111111235667888998 68888888887443 22222 34577899998543
No 105
>PF15067 FAM124: FAM124 family
Probab=95.50 E-value=0.16 Score=43.03 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=61.0
Q ss_pred ceEEEEEEEEcC--CHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCC
Q 026024 85 GYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG 162 (244)
Q Consensus 85 ~~~l~Hv~L~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~ 162 (244)
|-.+-.+.|.|+ |.+.+++||+-+|+-+...... .|..+-+ +... +..|.|.-..-
T Consensus 126 G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~FC~F~l-ys~~-----------------~~~iQlsLK~l 183 (236)
T PF15067_consen 126 GKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DFCFFTL-YSQP-----------------GLDIQLSLKQL 183 (236)
T ss_pred cccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----CcEEEEE-ecCC-----------------CeEEEEEeccC
Confidence 335566889999 9999999999999988765532 2433222 2111 34455432111
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEE
Q 026024 163 TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 231 (244)
Q Consensus 163 ~~~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi 231 (244)
+.+ .. +.|.--.-+.|.|.|+.++.--|- +.+ .+...+.+ -.+|||||.|-+
T Consensus 184 p~~---~~------p~p~esavLqF~V~~igqLvpLLP-npc---~PIS~~rW----qT~D~DGNkILL 235 (236)
T PF15067_consen 184 PPG---MS------PEPTESAVLQFRVEDIGQLVPLLP-NPC---SPISETRW----QTEDYDGNKILL 235 (236)
T ss_pred CCC---CC------cccccceEEEEEecchhhhcccCC-CCc---ccccCCcc----eeeCCCCCEecc
Confidence 111 00 111122478999999988754332 121 12222222 468999999854
No 106
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=95.16 E-value=0.41 Score=42.93 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=68.2
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~~~~ 164 (244)
.+.+.+|.+.|.|.+.++.=|-..|||......... ...++- ...+.++-+..+.
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk--~v~l~r-----------------------QGdinlvvn~~~~ 74 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK--AVTLYR-----------------------QGDINLVVNAEPD 74 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCcccccccccc--ceeEEE-----------------------eCCEEEEEcCCCc
Confidence 678889999999996666666678999887654311 122221 1223333222111
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEeCCHHHHHHHHHHCCCeEEecCC----------CCCcceEEEEECCCC
Q 026024 165 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD----------GGKLKGVAFIKDPDD 226 (244)
Q Consensus 165 ~~~~~~~~~~g~~~p~g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~----------~g~~~~~~~~~DPdG 226 (244)
+ ....+-. ..+.+..-++|.|+|.+.++++.++.|.+....+. .+..+.++|+.|.+|
T Consensus 75 s--~a~~f~~--~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 75 S--FAAEFLD--KHGPSACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred c--hhhHHHH--hcCCchheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 1 0001111 11235678999999999999999999996554332 123345788888883
No 107
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=93.70 E-value=0.44 Score=37.97 Aligned_cols=57 Identities=32% Similarity=0.509 Sum_probs=41.0
Q ss_pred CcceEEEEEeCCHHHHHHHHHH-CCCeEEecC----C----CC---------Cc--ceEEEEECCCCCEEEEEecCC
Q 026024 180 RGFGHIGITVDDVYKACERFER-LGVEFAKKP----D----GG---------KL--KGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 180 ~g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p----~----~g---------~~--~~~~~~~DPdG~~IEi~e~~~ 236 (244)
+++.|+++.|.|+++..+-.++ .|.++..++ . .+ .. -.++++..++|..||+++...
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 4789999999999999999977 798875321 0 01 11 124566767788999999754
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=92.16 E-value=1.1 Score=34.20 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.0
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecC
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 132 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~ 132 (244)
.-.+.|+++.|.|++++.+-.++ .|.++..............|+...
T Consensus 85 ~~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DP 131 (142)
T cd08353 85 ALGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGP 131 (142)
T ss_pred CCCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECC
Confidence 34688999999999999999966 688877532211223445566543
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.15 E-value=1.2 Score=32.60 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=38.0
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCC-cceEEEEECCCCCEEEEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~-~~~~~~~~DPdG~~IEi~e~~ 235 (244)
+++|+++.|+|++++.+..++ .|.++........ ....+.+..+++..+|++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcC
Confidence 678999999999999999985 7998865432111 111233455677788887644
No 110
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=91.84 E-value=1.1 Score=32.82 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=38.7
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCC-CCC-cceEEEEECC---CCCEEEEEecCC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPD-GGK-LKGVAFIKDP---DDYWIEIFDLKT 236 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~-~g~-~~~~~~~~DP---dG~~IEi~e~~~ 236 (244)
|++|+++.|+|+++..+..++ .|.++..... .+. .....++.+. +|..++|++...
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 457999999999999999986 6998765432 111 1223445554 677899987644
No 111
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=91.73 E-value=0.17 Score=40.81 Aligned_cols=51 Identities=25% Similarity=0.446 Sum_probs=29.2
Q ss_pred ceEEEEEeCCHHHHHHHH-HHCCCeEEecCCCCC---cceEEEEECCCCCEEEEEecC
Q 026024 182 FGHIGITVDDVYKACERF-ERLGVEFAKKPDGGK---LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 182 ~~hi~f~VdDvd~~~~rl-~~~Gv~v~~~p~~g~---~~~~~~~~DPdG~~IEi~e~~ 235 (244)
+.|+.+.|+|++++.+++ +..|+.+........ ...+++| +|| .|||+...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeC
Confidence 369999999999999999 788999886543332 2235555 667 99999854
No 112
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=91.14 E-value=1.3 Score=33.02 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=38.1
Q ss_pred cceEEEEEeCCHHHHHHHHHHC----CCeEEecCCCCCcceEEEEECCCCCEEEEEecCCC
Q 026024 181 GFGHIGITVDDVYKACERFERL----GVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 237 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~~----Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~~ 237 (244)
|++|+++.|+|++++.+...+. |.++...... ...|+...++..|+|.+....
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~----~~~~~~~~~~~~i~l~~~~~~ 57 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED----GRSWRAGDGGTYLVLQQADGE 57 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc----CceEEecCCceEEEEEecccC
Confidence 4579999999999999988875 9887765421 123433356778888887653
No 113
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=90.14 E-value=1.3 Score=35.38 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcE-EEEEeecCC
Q 026024 82 ATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYED 133 (244)
Q Consensus 82 ~~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~~~ 133 (244)
...+-.++||+|.|+|++++..-+++ +|.+...... +++. .++|+...+
T Consensus 110 N~~prGfgHIci~V~di~sac~~lke-kGV~f~Kk~~--dGk~K~iaF~~dpD 159 (170)
T KOG2944|consen 110 NKEPRGFGHICIEVDDINSACERLKE-KGVRFKKKLK--DGKMKPIAFLHDPD 159 (170)
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHH-hCceeeecCC--CccccceeEEECCC
Confidence 34456799999999999999999965 9999666543 4443 566666543
No 114
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=88.68 E-value=2.1 Score=31.50 Aligned_cols=53 Identities=28% Similarity=0.319 Sum_probs=37.5
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEEecCCCC--CcceEEEEECCCCCEEEEEecCC
Q 026024 183 GHIGITVDDVYKACERFER-LGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g--~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
.|+.|.|+|+++..+...+ .|.+........ ......++.. +|..++|++...
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~ 57 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPLD 57 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEECC
Confidence 5999999999999999987 788876543221 1122455554 688899998643
No 115
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=88.51 E-value=2.5 Score=29.50 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=39.5
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCCCCEEEEEecCCC
Q 026024 184 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 237 (244)
Q Consensus 184 hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~~ 237 (244)
|+.+.|.|+++..+...+ .|.+....... .....+++.+. +..|+|.+....
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-GGAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-CCEEEEEEecC-CceEEEecCCCC
Confidence 788999999999999998 89988776642 11234566665 789999987654
No 116
>PLN02367 lactoylglutathione lyase
Probab=87.89 E-value=3 Score=35.63 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=39.5
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeec
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~ 160 (244)
..++|++|.|.|++++.+-.++ .|.+++..... +....++|+...+ +..|||++.
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~-g~~~riaFIkDPD------------------Gn~IEL~e~ 222 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPND-GKMKGIAFIKDPD------------------GYWIEIFDL 222 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCcc-CCceEEEEEECCC------------------CCEEEEEec
Confidence 4689999999999999999955 99998864332 2113455665433 678898764
No 117
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=87.67 E-value=2.3 Score=30.13 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=36.6
Q ss_pred eEEEEEeCCHHHHHHHHH-HCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCCC
Q 026024 183 GHIGITVDDVYKACERFE-RLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 237 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~-~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~~ 237 (244)
+|+++.|+|++++.+... -.|.++...+... ....++...++..++|.+....
T Consensus 2 ~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~--~~~~~~~~~~~~~i~l~~~~~~ 55 (114)
T cd07245 2 DHVALRVPDLEASRAFYTDVLGLEEGPRPPFL--FPGAWLYAGDGPQLHLIEEDPP 55 (114)
T ss_pred CeEEEecCCHHHHHHHHHHccCCcccCcCCCC--CCceEEEeCCCcEEEEEecCCC
Confidence 699999999999999887 4688776544322 1224555555667888876543
No 118
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=87.43 E-value=3.8 Score=31.20 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=40.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~~ 161 (244)
-.+.|+++.|.|++++.+-.++ .|.+++............+|+...+ +..+++++..
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~------------------G~~ie~~~~~ 124 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYG------------------DSLHTLVDRK 124 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccC------------------CcEEEEEecC
Confidence 3577999999999998888754 7988876544323334556665433 6788988653
No 119
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=87.37 E-value=3.3 Score=32.74 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=36.5
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEEC--CCCCEEEEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKD--PDDYWIEIFDLK 235 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~D--PdG~~IEi~e~~ 235 (244)
|++||++.|+|+++..+...+ .|.++..... ....++.+ .+|..|++++..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG----DRVRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC----CEEEEEecCCCCCCEEEEEeCC
Confidence 568999999999999998876 5988765442 12233332 358899998863
No 120
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=87.28 E-value=3.2 Score=29.80 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=35.5
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCCC--CEEEEEecC
Q 026024 184 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDD--YWIEIFDLK 235 (244)
Q Consensus 184 hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPdG--~~IEi~e~~ 235 (244)
|+++.|.|+++..+..++ .|.++............+++.++++ ..++|.+..
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 55 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPA 55 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCC
Confidence 889999999999999987 8999876542111223455666654 456666543
No 121
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=86.49 E-value=3.8 Score=29.81 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=36.4
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEEecCC-CCCcceEEEEECCC---CCEEEEEecC
Q 026024 183 GHIGITVDDVYKACERFER-LGVEFAKKPD-GGKLKGVAFIKDPD---DYWIEIFDLK 235 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~-~g~~~~~~~~~DPd---G~~IEi~e~~ 235 (244)
.|+++.|+|++++.+..++ .|.++..... .......+++..++ +..+++.+..
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 59 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNW 59 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecC
Confidence 6999999999999999987 4998875432 11111234555554 5788887653
No 122
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.79 E-value=5.2 Score=29.37 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=36.4
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCC-CCEEEEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDLK 235 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPd-G~~IEi~e~~ 235 (244)
.++|+.+.|+|+++..+...+ .|.++..... ..+++...+ +..|.|.+..
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~-----~~~~l~~~~~~~~l~l~~~~ 53 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD-----STAVLGTGGKRPLLVLEEDP 53 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC-----CEEEEecCCCeEEEEEEeCC
Confidence 357999999999999999986 7998876631 124455544 5677777754
No 123
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=85.65 E-value=5.6 Score=28.96 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=35.6
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEEecCC-CCCcceEEEEECCCCCEEEEEecCC
Q 026024 182 FGHIGITVDDVYKACERFER-LGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFDLKT 236 (244)
Q Consensus 182 ~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~-~g~~~~~~~~~DPdG~~IEi~e~~~ 236 (244)
++|+++.|+|+++..+-.++ .|.++..... ........|+.-.+|..|++++...
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 58 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPD 58 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcc
Confidence 36999999999999988877 5887643211 1111123344434678899987543
No 124
>PRK11478 putative lyase; Provisional
Probab=85.14 E-value=5.8 Score=29.36 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=23.8
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEE
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLK 115 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~ 115 (244)
..+.|+++.|.|++++.+-..+ .|.++..
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 3578999999999999887755 7988764
No 125
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=84.84 E-value=5.6 Score=31.15 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=36.6
Q ss_pred CcceEEEEEeCCHHHHHHHHHH-CCCeEEecCCC----CCcceEEEEE-CCCCCEEEEEec
Q 026024 180 RGFGHIGITVDDVYKACERFER-LGVEFAKKPDG----GKLKGVAFIK-DPDDYWIEIFDL 234 (244)
Q Consensus 180 ~g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~----g~~~~~~~~~-DPdG~~IEi~e~ 234 (244)
.++.|++|.|+|+++..+..++ .|.++...... +.....+|++ +..++.|.+.+.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 4788999999999999998876 79987643211 1122334443 455677777554
No 126
>PRK10291 glyoxalase I; Provisional
Probab=83.90 E-value=5.5 Score=29.76 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=37.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEee-eCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeec
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL-DFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~ 160 (244)
-.++|+++.|.|++++.+-.++ .|.++.... ..+.+....+|+...+ +..|||++.
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPd------------------G~~iel~~~ 120 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPD------------------GYKIELIEE 120 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCC------------------CCEEEEEEc
Confidence 3688999999999999888855 788776432 2223323345555433 688999764
No 127
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=83.69 E-value=5.8 Score=32.54 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=37.9
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeec
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~ 160 (244)
-.++|++|.|.|++++.+.+++ .|+++...... .....+.|+...+ +..|||++.
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~~-~~~~~~~fi~DPd------------------G~~IEl~e~ 174 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPDD-GKMKGLAFIKDPD------------------GYWIEIFDL 174 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCcc-CCceeEEEEECCC------------------CCEEEEEEC
Confidence 3688999999999999999855 89988754321 2123445555433 678898764
No 128
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=83.58 E-value=12 Score=30.68 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHHhccCCEEE
Q 026024 83 TNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLL 114 (244)
Q Consensus 83 ~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~ 114 (244)
-..+.++|++++|.+.+.+.+|.+..+-....
T Consensus 30 l~~~~~DHialRvn~~~~A~~~~~~l~~~G~l 61 (185)
T PF06185_consen 30 LSQYEIDHIALRVNSNETAERWKQALLQCGEL 61 (185)
T ss_dssp -TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEE
T ss_pred ccccCCcEEEEecCCHHHHHHHHHHHHHhChh
Confidence 35689999999999999999999998876543
No 129
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=82.89 E-value=8.8 Score=28.65 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=36.6
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECC--CCCEEEEEecCC
Q 026024 182 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP--DDYWIEIFDLKT 236 (244)
Q Consensus 182 ~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DP--dG~~IEi~e~~~ 236 (244)
+.|+.+.|+|+++..+...+ .|.++...... ....|+... .+..+++++...
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~~ 56 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL---GGLVFLSRDPDEHHQIALITGRP 56 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC---CcEEEEEecCCCceEEEEEecCC
Confidence 46999999999999999987 79987654421 123455543 356788877543
No 130
>PRK11700 hypothetical protein; Provisional
Probab=82.74 E-value=9 Score=31.49 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=25.7
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHHhccCCE
Q 026024 83 TNGYFMQQTMFRIKDPKVSLDFYSRVLGMS 112 (244)
Q Consensus 83 ~~~~~l~Hv~L~V~Dle~a~~FY~~vLG~~ 112 (244)
-..+..+|++|+|.+.+.|.+|.+..+-+.
T Consensus 35 l~~~~~DHialR~n~~~tAe~w~~~l~~~G 64 (187)
T PRK11700 35 LSQLEADHIALRCNQNETAERWRQGFLQCG 64 (187)
T ss_pred cccccCcEEEEeeCCHHHHHHHHHHHHHhc
Confidence 345789999999999999999999887554
No 131
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=82.64 E-value=6.2 Score=28.90 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=31.1
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEe
Q 026024 183 GHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e 233 (244)
.|+.+.|+|+++..+-.+..|.++...... . ..+.+.-++|..|.+.+
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~--~-~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADD--E-PHVEAVLPGGVRLAWDT 49 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCC--C-CcEEEEeCCCEEEEEEc
Confidence 599999999999999888789876432211 1 12334445565555443
No 132
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=82.64 E-value=12 Score=27.00 Aligned_cols=53 Identities=32% Similarity=0.521 Sum_probs=36.6
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCC---CCCcceEEEEECCCCCEEEEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPD---GGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~---~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
|++|+++.|.|+++..+...+ .|.++..... ........++...+. .+++...
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 57 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFLN 57 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc-ceeeeee
Confidence 468999999999999998887 6999887553 122223455555554 4565554
No 133
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=82.36 E-value=9.1 Score=28.90 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=34.6
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECC---CCCEEEEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP---DDYWIEIFDLK 235 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DP---dG~~IEi~e~~ 235 (244)
.+.|++|.|+|+++..+-.++ .|.++...... ...|++.. ..+.|++.+..
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~----~~~~~~~~~~~~~~~i~l~~~~ 57 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG----RGAFLRAAGGGDHHNLFLIKTP 57 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC----cEEEEECCCCCCCcEEEEecCC
Confidence 668999999999999998876 69987654321 12455443 23567776543
No 134
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=81.98 E-value=6 Score=27.73 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecCCCCCCC
Q 026024 191 DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGKIG 241 (244)
Q Consensus 191 Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~~~~~~~ 241 (244)
..+++.+.+++.|+++...-.+......+...|.||+.+||.=....+.+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~V~ 80 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDPATGEVV 80 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcCCCCeEe
Confidence 689999999999997765332111123577899999999998766655543
No 135
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=81.41 E-value=10 Score=27.47 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=24.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHCCCeEEec
Q 026024 181 GFGHIGITVDDVYKACERFERLGVEFAKK 209 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~~Gv~v~~~ 209 (244)
++.|++|.|+|+++..+.....|.++...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 56899999999999998888889887643
No 136
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=81.08 E-value=6.8 Score=32.11 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=39.5
Q ss_pred cceEEEEEeC--CHHHHHHHHHH-CCCeEEecCCC-C--CcceEEEEECCCC-CEEEEEecCC
Q 026024 181 GFGHIGITVD--DVYKACERFER-LGVEFAKKPDG-G--KLKGVAFIKDPDD-YWIEIFDLKT 236 (244)
Q Consensus 181 g~~hi~f~Vd--Dvd~~~~rl~~-~Gv~v~~~p~~-g--~~~~~~~~~DPdG-~~IEi~e~~~ 236 (244)
++.|+++.|+ |++++.+..++ .|.+....... . ......++..|+| ..|+|.++..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5689999999 99999999866 79987653321 1 1123456777775 5688888654
No 137
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=80.17 E-value=7 Score=28.68 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=33.9
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEEecCCC-CCcceEEEEECCCCCEEEEEec
Q 026024 182 FGHIGITVDDVYKACERFER-LGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 182 ~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~-g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
+.|+++.|+|++++.+..++ .|.++...... .......++. +++..|+|++.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIA-LGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEe-cCCEEEEEEec
Confidence 46999999999999999985 69887543211 1111233333 44678888874
No 138
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=79.24 E-value=10 Score=27.37 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=34.1
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
+++|+.+.|+|+++..+..++ .|.++........ ...+.- ++..+++.+.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~---~~~~~~-~~~~~~l~~~ 53 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVG---RKALRF-GSQKINLHPV 53 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccccCC---ceEEEe-CCEEEEEecC
Confidence 678999999999999999988 7998876543111 122222 2356777664
No 139
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=77.92 E-value=28 Score=27.57 Aligned_cols=25 Identities=8% Similarity=0.271 Sum_probs=22.3
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCE
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMS 112 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~ 112 (244)
++|++|+|.+.+.+.+|.+..+-+.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G 26 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCG 26 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhc
Confidence 5799999999999999999888654
No 140
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.29 E-value=34 Score=27.03 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=30.5
Q ss_pred EEEEEeC---CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 184 HIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 184 hi~f~Vd---Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.+-+.|+ ++|++.+.|.+.|.+ ...+.+++|-.|.-|.|+-+
T Consensus 80 S~~v~~~~q~E~Drlwnal~~~g~e---------~~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 80 SFQVACDDQEEIDRLWNALSDNGGE---------AEACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEEcCCHHHHHHHHHHHhccCcc---------hhcceeEecccCcEEEEcHH
Confidence 4455555 488888999988862 12346899999999998754
No 141
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=76.98 E-value=16 Score=26.17 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=34.1
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECC--CCCEEEEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP--DDYWIEIFDL 234 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DP--dG~~IEi~e~ 234 (244)
.++|+.|.|+|+++..+..++ .|.++..... ..+|++.. +...+.+...
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 53 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA-----GSVYLRCSEDDHHSLVLTEG 53 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC-----CeEEEecCCCCcEEEEEEeC
Confidence 357999999999999999998 7998876542 12455554 3334555443
No 142
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=76.17 E-value=20 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=25.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEee
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL 117 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~ 117 (244)
....|+.+.|.|+++..+...+ +|.++....
T Consensus 55 ~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~ 85 (108)
T PF12681_consen 55 GGGFHLCFEVEDVDALYERLKE-LGAEIVTEP 85 (108)
T ss_dssp SSEEEEEEEESHHHHHHHHHHH-TTSEEEEEE
T ss_pred CceeEEEEEEcCHHHHHHHHHH-CCCeEeeCC
Confidence 4567999999999999999865 899876553
No 143
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=75.87 E-value=19 Score=27.31 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=33.8
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
++.|+++.|+|+++..+...+ .|.++.... ...+|+.- +|..+.+...
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~-----~~~~~~~~-~g~~l~l~~~ 52 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKG-----RKTAYFDL-NGLWIALNEE 52 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeec-----CeeEEEec-CCeEEEeecc
Confidence 678999999999999998875 798876432 12344433 4667766554
No 144
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=75.37 E-value=14 Score=27.07 Aligned_cols=49 Identities=16% Similarity=0.407 Sum_probs=32.4
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECC-CCCEEEEEe
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP-DDYWIEIFD 233 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DP-dG~~IEi~e 233 (244)
++.|+++.|+|+++..+...+ .|.++...+.. ..+|+..+ .++.+.+.+
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~----~~~~~~~~~~~~~~~l~~ 52 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED----GALYLRMDDRAWRIAVHP 52 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC----CeEEEEccCCceEEEEEe
Confidence 457999999999999999877 69987654321 12344443 344555544
No 145
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=74.56 E-value=17 Score=27.99 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=37.7
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhccCCEEEEeee-CCCCcEEEEEeecCCCCCCCCCCccceeeecCCCcEEEEeec
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLD-FPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~leL~~~ 160 (244)
..+.|+++.|.|++++.+...+ .|.++..... .+.+.....|+...+ +..++|+..
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPd------------------G~~iel~~~ 141 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPD------------------GYKIELIQR 141 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCC------------------CCEEEEEEC
Confidence 3588999999999999999965 8887764421 122333344554433 678888764
No 146
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=73.97 E-value=22 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=25.0
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~ 209 (244)
+++|+.+.|+|++++.+...+ .|.++...
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 678999999999999998887 59887654
No 147
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=73.56 E-value=21 Score=26.82 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=34.7
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCC-C-cceEEEEECCCCCEEEEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGG-K-LKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g-~-~~~~~~~~DPdG~~IEi~e~~ 235 (244)
+++|+.+.|+|+++..+...+ .|.+........ . .....++. -.|..|++.+..
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~ 60 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IGGLWIAIMEGD 60 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cCCeEEEEecCC
Confidence 678999999999999998877 798765443211 1 11111222 235788887654
No 148
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=73.09 E-value=24 Score=27.74 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=24.9
Q ss_pred CcceEEEEEeCCHHHHHHHHHH-CCCeEEe
Q 026024 180 RGFGHIGITVDDVYKACERFER-LGVEFAK 208 (244)
Q Consensus 180 ~g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~ 208 (244)
.++.|+++.|+|+++..+-..+ .|.++..
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 3678999999999999998877 7998754
No 149
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.08 E-value=26 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=24.6
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p 210 (244)
.+.|+++.|.|+++..+--.+ .|.++....
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 357999999999999998854 799876533
No 150
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=71.50 E-value=20 Score=25.87 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=21.8
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEe
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~ 116 (244)
|+.+.|.|+++..+...+ .|.++...
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 899999999999999876 68776544
No 151
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=70.92 E-value=22 Score=26.20 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=33.6
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.+.|+.+.|.|+++..+..++ .|.+..... + ...++...+|..+++.+.
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~--~---~~~~~~~~~~~~l~~~~~ 53 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF--G---PFAVVKLDNGVSLDFAQP 53 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc--C---CEEEEEcCCCcEEEEecC
Confidence 457999999999999888865 598876532 1 123344445667776653
No 152
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=70.64 E-value=25 Score=26.22 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=33.3
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCC-CCEEEEEec
Q 026024 183 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDL 234 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPd-G~~IEi~e~ 234 (244)
.||+|.|.|++++.+-..+ .|+++.............|++..+ +..+++...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcC
Confidence 3999999999999998876 799876543211111234444433 456777664
No 153
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=69.74 E-value=30 Score=24.98 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=23.2
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEe
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~ 116 (244)
.+.|+++.|.|.++..+.. +.+|......
T Consensus 57 ~~~~~af~v~~~~~~~~~~-~~~g~~~~~~ 85 (113)
T cd07267 57 RFVGAAFEAASRADLEKAA-ALPGASVIDD 85 (113)
T ss_pred cccEEEEEECCHHHHHHHH-HcCCCeeecC
Confidence 5779999999999888885 5688876643
No 154
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=69.71 E-value=28 Score=25.37 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.2
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~ 209 (244)
++.|+.|.|+|+++..+...+ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 678999999999999999976 79987654
No 155
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=67.94 E-value=30 Score=25.08 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=25.5
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p 210 (244)
++.|+.+.|+|+++..+...+ .|.++....
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccC
Confidence 567999999999999999987 798876543
No 156
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=67.07 E-value=39 Score=24.09 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=22.5
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEe
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~ 116 (244)
..|+.+.|.|++++.+-.++ .|.++...
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 34899999999999888854 78887654
No 157
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=66.89 E-value=43 Score=23.87 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=23.3
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEee
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRL 117 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~ 117 (244)
..|+.+.|.|+++..+-..+ .|.++....
T Consensus 62 ~~~~~f~v~di~~~~~~l~~-~g~~~~~~~ 90 (114)
T cd07247 62 GWLVYFAVDDVDAAAARVEA-AGGKVLVPP 90 (114)
T ss_pred eEEEEEEeCCHHHHHHHHHH-CCCEEEeCC
Confidence 55899999999999888765 698877553
No 158
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.51 E-value=13 Score=23.89 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHCCCeE
Q 026024 181 GFGHIGITVDDVYKACERFERLGVEF 206 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~~Gv~v 206 (244)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44688999999999999999999876
No 159
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.39 E-value=31 Score=23.75 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCeEEecC--CCC-CcceEEEEECCCCCEEE
Q 026024 192 VYKACERFERLGVEFAKKP--DGG-KLKGVAFIKDPDDYWIE 230 (244)
Q Consensus 192 vd~~~~rl~~~Gv~v~~~p--~~g-~~~~~~~~~DPdG~~IE 230 (244)
+..+.+-+.+.|+.+...- ..| .....||+.|.+|+.++
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 6778888999999987543 223 23358999999998763
No 160
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=64.79 E-value=35 Score=26.51 Aligned_cols=31 Identities=10% Similarity=-0.099 Sum_probs=23.9
Q ss_pred eEEEEEEEEcCCHHHHHHHHHh--ccCCEEEEe
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSR--VLGMSLLKR 116 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~--vLG~~~~~~ 116 (244)
-.++|+++.|.|+++..+.|.. -.|+++...
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~ 98 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWG 98 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeec
Confidence 4589999999999999866654 357776643
No 161
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=64.63 E-value=34 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.6
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~ 209 (244)
+++|+.|.|+|+++..+...+ .|.+....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 678999999999999988886 68887644
No 162
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=64.28 E-value=44 Score=25.66 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=23.5
Q ss_pred ceEEEEEEEEcCCHHHHHHHHHhc--cCCEEEE
Q 026024 85 GYFMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (244)
Q Consensus 85 ~~~l~Hv~L~V~Dle~a~~FY~~v--LG~~~~~ 115 (244)
...++|+++.|.|++...++|+.+ .|.++..
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 457999999999988776777654 5776653
No 163
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.08 E-value=33 Score=24.89 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=32.2
Q ss_pred eEEEEEeCCHHHHHHHHHH----CCCeEEecCCCCCcceEEEEECC-CCCEEEEEec
Q 026024 183 GHIGITVDDVYKACERFER----LGVEFAKKPDGGKLKGVAFIKDP-DDYWIEIFDL 234 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~----~Gv~v~~~p~~g~~~~~~~~~DP-dG~~IEi~e~ 234 (244)
.|+.+.|.|+++..+-.++ .|.+....... .. +++..+ .+..+.+...
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~---~~-~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP---GA-VGYGKGGGGPDFWVTKP 54 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC---ce-eEeccCCCCceEEEecc
Confidence 5999999999999888876 58887654311 11 333444 3566777664
No 164
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=62.15 E-value=36 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=24.9
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEec
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~ 209 (244)
+++|+.|.|+|+++..+...+ .|+++...
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 678999999999999999975 79987643
No 165
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=60.21 E-value=47 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.1
Q ss_pred EEEEEcCCHHHHHHHHHhccCCEEEEe
Q 026024 90 QTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (244)
Q Consensus 90 Hv~L~V~Dle~a~~FY~~vLG~~~~~~ 116 (244)
|+.|.|.|++++.+...+ .|.++...
T Consensus 74 ~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 74 EIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 899999999999888754 68877644
No 166
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=59.36 E-value=38 Score=25.41 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=31.0
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 183 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
+|+++.|+|+++..+...+ .|.++..... ...|+.- .|..+++.+.
T Consensus 2 ~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~-----~~~~~~~-~~~~l~l~~~ 48 (131)
T cd08363 2 NHMTFSVSNLDKSISFYKHVFMEKLLVLGE-----KTAYFTI-GGTWLALNEE 48 (131)
T ss_pred ceEEEEECCHHHHHHHHHHhhCCEEeccCC-----ccceEee-CceEEEEEcc
Confidence 5999999999999998887 5887754321 1123332 3566766553
No 167
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=59.12 E-value=50 Score=24.39 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=32.5
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEE-CCCCCEEEEEe
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIK-DPDDYWIEIFD 233 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~-DPdG~~IEi~e 233 (244)
.+.|+.+.|+|+++..+...+ .|.++..... ..+|++ +.+++.+.+.+
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~-----~~~~l~~~~~~~~i~l~~ 55 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTA-----KATYFRSDARDHTLVYIE 55 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCC-----CeEEEEcCCccEEEEEEe
Confidence 457999999999999998887 5988764421 123333 44556666543
No 168
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=58.53 E-value=52 Score=25.22 Aligned_cols=30 Identities=10% Similarity=-0.087 Sum_probs=22.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhc--cCCEEEE
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~v--LG~~~~~ 115 (244)
-.++|+++.|.|+++..+.+..+ .|.++..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~ 97 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDI 97 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEE
Confidence 35889999999999976665443 6777653
No 169
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.25 E-value=51 Score=24.08 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=31.3
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 183 GHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.++.+.|+|+++..+-.+..|.+......... ...+ .-.++..|.+.+.
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~~~~~~--~~~~-~~~~~~~l~l~~~ 50 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQFSDEK--AACM-VISDNIFVMLLTE 50 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEccccCCCC--eEEE-EECCceEEEEEcH
Confidence 47899999999999988888988764221111 1122 2234566767654
No 170
>PRK06724 hypothetical protein; Provisional
Probab=57.59 E-value=71 Score=24.08 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=19.8
Q ss_pred EEEEEEEEcCCHHHHHHHHHhc--cCCEEEE
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~v--LG~~~~~ 115 (244)
...|+++.|.+.+.--++++.+ .|.++..
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~ 93 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKIIR 93 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEEec
Confidence 4679999996655555566554 6887653
No 171
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=57.43 E-value=45 Score=25.61 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=32.3
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECC-CCCEEEEEe
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP-DDYWIEIFD 233 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DP-dG~~IEi~e 233 (244)
.+.|+.+.|+|++++.+-.++ .|.++..... ....|+... .++.+.+..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----~~~~~l~~~~~~~~~~l~~ 54 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----DQMAFLRCNSDHHSIAIAR 54 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----CeEEEEECCCCcceEEEcc
Confidence 568999999999999998865 7988754321 122344433 345566554
No 172
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=55.59 E-value=58 Score=22.85 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=20.0
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCE
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMS 112 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~ 112 (244)
-.|+.+.|.|+++..+-..+ +|.+
T Consensus 59 ~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 59 GGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 34789999999999988855 7887
No 173
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=54.82 E-value=95 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.3
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEEec
Q 026024 184 HIGITVDDVYKACERFERLGVEFAKK 209 (244)
Q Consensus 184 hi~f~VdDvd~~~~rl~~~Gv~v~~~ 209 (244)
-+-++|+|+|+..+.|+++|+++...
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 67899999999999999999998754
No 174
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=54.01 E-value=22 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=25.2
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p 210 (244)
++.|+++.|+|+++..+..++ .|.++....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeec
Confidence 457999999999999998887 898886543
No 175
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=53.48 E-value=83 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=20.5
Q ss_pred EEEEEEcCCHHHHHHHHHhccCCEEEE
Q 026024 89 QQTMFRIKDPKVSLDFYSRVLGMSLLK 115 (244)
Q Consensus 89 ~Hv~L~V~Dle~a~~FY~~vLG~~~~~ 115 (244)
.|+.+.|.|+++..+-.++.=|.++..
T Consensus 66 ~~l~~~v~dvd~~~~~l~~~g~~~~~~ 92 (120)
T cd09011 66 FELYFEEEDFDAFLDKLKRYDNIEYVH 92 (120)
T ss_pred eEEEEEehhhHHHHHHHHhcCCcEEec
Confidence 599999999999999987632345543
No 176
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.36 E-value=70 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=22.2
Q ss_pred CceEEEEEEEEcCCHHHHHHHHHhccCC
Q 026024 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGM 111 (244)
Q Consensus 84 ~~~~l~Hv~L~V~Dle~a~~FY~~vLG~ 111 (244)
..+.++|++|+|.+..-+..|-+..+-+
T Consensus 36 t~~~~DHIaLRvh~~qtAk~wr~~~lqc 63 (185)
T COG3102 36 TQYTADHIALRVHQEQTAKRWRRGLLQC 63 (185)
T ss_pred cccccceeEEEeCcHHHHHHHHHHHHHH
Confidence 4578999999999988888877665544
No 177
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=52.43 E-value=83 Score=22.40 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=22.0
Q ss_pred EEEEEEEEcCCHHHHHHHHHhccCCEEEEee
Q 026024 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL 117 (244)
Q Consensus 87 ~l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~~ 117 (244)
...|+.+.|.|+++..+-..+ .|.++....
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~ 97 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMPP 97 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecCc
Confidence 355999999999987666544 588776543
No 178
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.99 E-value=33 Score=22.59 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=21.6
Q ss_pred ceEEEEEeC--CHHHHHHHHHHCCCeEEec
Q 026024 182 FGHIGITVD--DVYKACERFERLGVEFAKK 209 (244)
Q Consensus 182 ~~hi~f~Vd--Dvd~~~~rl~~~Gv~v~~~ 209 (244)
...+.|.++ |.+.+.+.|+++|+++..+
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 345666664 8889999999999988653
No 179
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.26 E-value=53 Score=23.46 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=31.9
Q ss_pred EEEEeCCHHHHHHHHHHC-CCeEEecCCCCCcceEEEEECCCCCEEEEEecC
Q 026024 185 IGITVDDVYKACERFERL-GVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 185 i~f~VdDvd~~~~rl~~~-Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
|.|.|+|+++..+...+. |.++..... ....++.. +|..+++++..
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~-~~~~~~l~~~~ 48 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN----DGVAFFQL-GGLVLALFPRE 48 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC----CceEEEEc-CCeEEEEecch
Confidence 678999999999988775 988765521 12344444 67788887643
No 180
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=50.35 E-value=70 Score=22.58 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=22.0
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEecC
Q 026024 184 HIGITVDDVYKACERFER-LGVEFAKKP 210 (244)
Q Consensus 184 hi~f~VdDvd~~~~rl~~-~Gv~v~~~p 210 (244)
|+++.|+|+++..+-..+ .|.+.....
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~ 28 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSS 28 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeecc
Confidence 789999999999888887 687765443
No 181
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=49.55 E-value=35 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=24.7
Q ss_pred cceEEEEEeCCHHHHHHHHHH-CCCeEEecC
Q 026024 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p 210 (244)
|+.|+.+.|+|++++.+...+ .|.++....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~ 31 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRW 31 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEec
Confidence 457999999999999998876 798876543
No 182
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.07 E-value=1.1e+02 Score=21.25 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCeEEecC--CCC-CcceEEEEECCCCCEEE
Q 026024 192 VYKACERFERLGVEFAKKP--DGG-KLKGVAFIKDPDDYWIE 230 (244)
Q Consensus 192 vd~~~~rl~~~Gv~v~~~p--~~g-~~~~~~~~~DPdG~~IE 230 (244)
+..+..-|.+.|+.+...- ..| .....||++|.+|..|+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 6677778889999887533 222 22358999999998763
No 183
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.91 E-value=1.4e+02 Score=21.38 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=22.5
Q ss_pred eEEEEEEEEcCCHHHHHHHHHhcc--CCEEEEe
Q 026024 86 YFMQQTMFRIKDPKVSLDFYSRVL--GMSLLKR 116 (244)
Q Consensus 86 ~~l~Hv~L~V~Dle~a~~FY~~vL--G~~~~~~ 116 (244)
-.++|+++.|.|.+.-.++|.++- |.++...
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~ 89 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKE 89 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEcc
Confidence 357899999999777777776654 7766543
No 184
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=38.09 E-value=7.8 Score=24.17 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=17.6
Q ss_pred EEEEEEEcCCHHHHHHHHHhcc
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVL 109 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vL 109 (244)
++-.+|.++++++..+||+..|
T Consensus 12 ~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 12 VDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cccCCCccccccchhHHHHHHH
Confidence 3446677789999999999876
No 185
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.88 E-value=60 Score=23.35 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEEec
Q 026024 184 HIGITVDDVYKACERFER-LGVEFAKK 209 (244)
Q Consensus 184 hi~f~VdDvd~~~~rl~~-~Gv~v~~~ 209 (244)
|+.|.|+|+++..+..++ .|.++...
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeec
Confidence 999999999999998886 79887643
No 186
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.73 E-value=1.5e+02 Score=21.06 Aligned_cols=48 Identities=29% Similarity=0.312 Sum_probs=33.4
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEEecCCCCCcceEEEEECCCCCEEEEEec
Q 026024 183 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 183 ~hi~f~VdDvd~~~~rl~~-~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~ 234 (244)
.|+++.|.|+++..+..++ .|.++...+. + ..+++.-.++..+.+++.
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~---~~~~l~~~~~~~~~l~~~ 50 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKED-R---RLAFFWVGGRGMLLLFDP 50 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCC-C---ceEEEEcCCCcEEEEEec
Confidence 4899999999999999975 6998876432 1 234555455566666664
No 187
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.47 E-value=64 Score=22.50 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=24.3
Q ss_pred cceEEEEEeCC----HHHHHHHHHHCCCeEEecC
Q 026024 181 GFGHIGITVDD----VYKACERFERLGVEFAKKP 210 (244)
Q Consensus 181 g~~hi~f~VdD----vd~~~~rl~~~Gv~v~~~p 210 (244)
+...+.++|+| ++.+.+.|+++|+++...-
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~ 73 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVDLS 73 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECC
Confidence 33577889888 9999999999999986533
No 188
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=36.46 E-value=36 Score=30.28 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=31.4
Q ss_pred EEEEEE--c---CCHHHHHHHHHhccCCEEEEeeeCCCCcEEEEEeec
Q 026024 89 QQTMFR--I---KDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 131 (244)
Q Consensus 89 ~Hv~L~--V---~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~ 131 (244)
+|++|+ . ..++.-.+++ ..||++.....+++..+.....+..
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F-~~lGy~~~G~Y~f~~kkl~a~~f~p 82 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIF-AALGYEPVGYYDFPAKKLHATWFRP 82 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHH-HTTTEEEEEEEEEGGGTEEEEEEEE
T ss_pred eeeEEEecCCCchhHHHHHHHH-HHcCCEEcceecccccCceEEEecC
Confidence 899999 3 3788888888 5699999998887766655444443
No 189
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.43 E-value=73 Score=25.58 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCE
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 228 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~ 228 (244)
.|++.+.+.|+++|+++..+-..|..++-++|.--+|..
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 489999999999999999877667666656654444533
No 190
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=36.38 E-value=31 Score=29.26 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=29.4
Q ss_pred EEEeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEE
Q 026024 186 GITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 231 (244)
Q Consensus 186 ~f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi 231 (244)
+|.-.|.+.+++.+ .|+.+...+..|+. -.|+++|||||-.-+
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 225 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSKQPV-LLFNVKQPSSYSCML 225 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccccce-EEEEeeCCCccchhh
Confidence 44445777777744 78888877755543 256799999986543
No 191
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=36.28 E-value=62 Score=24.18 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCE
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 228 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~ 228 (244)
.|++.+.+-|++.|+++...-..|..++-++|.--+|.+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v 102 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEV 102 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEE
Confidence 479999999999999999877667666666654444543
No 192
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.04 E-value=75 Score=25.64 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=29.6
Q ss_pred EeCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCC
Q 026024 188 TVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 227 (244)
Q Consensus 188 ~VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~ 227 (244)
--.|++.+.+.|++.|+++..+-..|..++-++|.--+|.
T Consensus 113 G~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~ 152 (167)
T PRK13498 113 ADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGN 152 (167)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 3358999999999999999988766766665554333453
No 193
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.22 E-value=29 Score=29.43 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.8
Q ss_pred CHHHHHHHHHhccCCEEEEe
Q 026024 97 DPKVSLDFYSRVLGMSLLKR 116 (244)
Q Consensus 97 Dle~a~~FY~~vLG~~~~~~ 116 (244)
|+.+++.||.+.||+++..-
T Consensus 146 ~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred ccHHHHHHHHHhcCceeeec
Confidence 78899999999999998764
No 194
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.21 E-value=80 Score=25.29 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCE
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 228 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~ 228 (244)
.|++.+.+.|++.|+++..+-..|..++-++|.--+|..
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 143 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKL 143 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999999877666666656654444543
No 195
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=32.99 E-value=88 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEE
Q 026024 184 HIGITVDDVYKACERFERLGVEFA 207 (244)
Q Consensus 184 hi~f~VdDvd~~~~rl~~~Gv~v~ 207 (244)
.+-+.++|.+.+.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 556677999999999999998863
No 196
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.83 E-value=91 Score=25.62 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCE
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 228 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~ 228 (244)
.|++.+.+.|+++|+++...-..|..++-++|..-+|..
T Consensus 112 rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v 150 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRA 150 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeE
Confidence 489999999999999999877667776655554444544
No 197
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.40 E-value=1e+02 Score=24.83 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCE
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 228 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~ 228 (244)
.|++.+.+.|++.|+++..+-..|..++-++|..-+|..
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999999877666666656554444533
No 198
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.32 E-value=94 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCC
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 227 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~ 227 (244)
.|++.+.+.|++.|+++...-..|..++-++|.--+|.
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~ 176 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQ 176 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 48999999999999999987766766665554444453
No 199
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=2.2e+02 Score=22.77 Aligned_cols=53 Identities=26% Similarity=0.405 Sum_probs=38.8
Q ss_pred cceEEEEEeCCHHHHHHHHHHCCCeEE--ecCC-------------C--CC----cceEEEEECCCCCEEEEEe
Q 026024 181 GFGHIGITVDDVYKACERFERLGVEFA--KKPD-------------G--GK----LKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~~Gv~v~--~~p~-------------~--g~----~~~~~~~~DPdG~~IEi~e 233 (244)
|...|++.+|+++...+-.+++|+++. ..+. . |. ..+..|+-|+||.+..++.
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 567899999999999888888887763 2210 0 11 1246899999999998883
No 200
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.77 E-value=1.1e+02 Score=24.42 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=28.8
Q ss_pred eCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCC
Q 026024 189 VDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 227 (244)
Q Consensus 189 VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~ 227 (244)
-.|++.+.+.|+++|+++..+-..|..++-++|.--+|.
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~ 144 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGK 144 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCE
Confidence 358999999999999999987766666665554333343
No 201
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.58 E-value=1.1e+02 Score=25.54 Aligned_cols=39 Identities=10% Similarity=-0.020 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCE
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 228 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~ 228 (244)
.|++.+.+.|++.|+++...-..|..++-++|.--+|..
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v 153 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRV 153 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999999877666666655544444544
No 202
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=28.45 E-value=1e+02 Score=19.90 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEEecC
Q 026024 191 DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 191 Dvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
++++...+-..+|-.+......+. .-..+|||.+|-|++..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g~----~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPGP----VAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-----S-----EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCCCce----EEEECCCCcEEEEEEcc
Confidence 345555666677866554432222 33579999999999764
No 203
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.34 E-value=1.2e+02 Score=25.25 Aligned_cols=39 Identities=0% Similarity=-0.142 Sum_probs=29.0
Q ss_pred eCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCC
Q 026024 189 VDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 227 (244)
Q Consensus 189 VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~ 227 (244)
-.|++.+.+.|++.|+++...-..|..++-++|.--+|.
T Consensus 126 ~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~ 164 (201)
T PRK13487 126 ERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGK 164 (201)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCE
Confidence 358999999999999999987766766665554333343
No 204
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=27.31 E-value=1.5e+02 Score=23.88 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=30.3
Q ss_pred eCCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCC
Q 026024 189 VDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 227 (244)
Q Consensus 189 VdDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~ 227 (244)
-.|++.+.+.|++.|++++.+-..|..++-+||.--+|-
T Consensus 113 ~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~ 151 (164)
T COG1871 113 ERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGR 151 (164)
T ss_pred hHHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCc
Confidence 358999999999999999998877777776665444454
No 205
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.55 E-value=1.3e+02 Score=25.77 Aligned_cols=38 Identities=3% Similarity=-0.151 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCC
Q 026024 190 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 227 (244)
Q Consensus 190 dDvd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~ 227 (244)
.|++.+.+.|++.|+++..+-..|..++-++|.--+|.
T Consensus 125 RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~ 162 (233)
T PRK13489 125 RNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGR 162 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 58999999999999999987766776665554333343
No 206
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=26.33 E-value=75 Score=16.58 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=8.2
Q ss_pred EEEECCCCCEEE
Q 026024 219 AFIKDPDDYWIE 230 (244)
Q Consensus 219 ~~~~DPdG~~IE 230 (244)
..++|++|++|-
T Consensus 9 ~i~~D~~G~lWi 20 (24)
T PF07494_consen 9 SIYEDSDGNLWI 20 (24)
T ss_dssp EEEE-TTSCEEE
T ss_pred EEEEcCCcCEEE
Confidence 446899999873
No 207
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.23 E-value=2.5e+02 Score=21.34 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=34.6
Q ss_pred cceEEEEEeCCHHHHHHHHHHCCCeE--EecCCC------CC-------------cceEEEEECCCCCEEEEEe
Q 026024 181 GFGHIGITVDDVYKACERFERLGVEF--AKKPDG------GK-------------LKGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 181 g~~hi~f~VdDvd~~~~rl~~~Gv~v--~~~p~~------g~-------------~~~~~~~~DPdG~~IEi~e 233 (244)
++.-|++.+++.+++.+.+++.|+.+ ...+.. +. .....|+.||+|.++..+.
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 55678888888888777777777644 222210 10 0024689999999988875
No 208
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=25.95 E-value=50 Score=18.83 Aligned_cols=18 Identities=17% Similarity=0.523 Sum_probs=13.7
Q ss_pred EcCCHHHHHHHHHhccCC
Q 026024 94 RIKDPKVSLDFYSRVLGM 111 (244)
Q Consensus 94 ~V~Dle~a~~FY~~vLG~ 111 (244)
...|.++|+.+|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 357899999999997743
No 209
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=73 Score=28.08 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=34.7
Q ss_pred EEEEEeCC-HHHHHHHHHHCCCeEEecC-CCCCcceEEEEECCCCCEEEEEecC
Q 026024 184 HIGITVDD-VYKACERFERLGVEFAKKP-DGGKLKGVAFIKDPDDYWIEIFDLK 235 (244)
Q Consensus 184 hi~f~VdD-vd~~~~rl~~~Gv~v~~~p-~~g~~~~~~~~~DPdG~~IEi~e~~ 235 (244)
-|..+|+| +..+.+-|+...-.+...| ..++.....| +.+||+.+||...+
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~f-qn~~~y~VefLTtn 212 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSAF-QNRDGYRVEFLTTN 212 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCccCCCccceee-ecCCCeEEEEeccC
Confidence 45566664 6777777776666666666 3344433444 99999999999854
No 210
>PHA00450 host dGTPase inhibitor
Probab=23.90 E-value=1.7e+02 Score=20.68 Aligned_cols=43 Identities=12% Similarity=-0.108 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHCCCeEEecCCC-CC-c--ceEEEEECCCCCEEEEEe
Q 026024 191 DVYKACERFERLGVEFAKKPDG-GK-L--KGVAFIKDPDDYWIEIFD 233 (244)
Q Consensus 191 Dvd~~~~rl~~~Gv~v~~~p~~-g~-~--~~~~~~~DPdG~~IEi~e 233 (244)
++.++.+||.++.+.++.+... .. . ....-+.|-+|++|.-..
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~t 57 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASRT 57 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeeee
Confidence 5788899999999888765421 11 1 124668999999986544
No 211
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=23.87 E-value=2.8e+02 Score=19.80 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=20.6
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEEEe
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~~~ 116 (244)
-.|+.+.|.|++++.+=..+ .|.++...
T Consensus 69 ~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 69 TQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred eEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 35899999999887665544 58777754
No 212
>PTZ00056 glutathione peroxidase; Provisional
Probab=23.80 E-value=3.9e+02 Score=21.79 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=18.7
Q ss_pred cceEEEEEe--------CCHHHHHHHHHHCCCeE
Q 026024 181 GFGHIGITV--------DDVYKACERFERLGVEF 206 (244)
Q Consensus 181 g~~hi~f~V--------dDvd~~~~rl~~~Gv~v 206 (244)
|+.-|++.+ ++.+++.+.+++.|+.+
T Consensus 72 g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~f 105 (199)
T PTZ00056 72 GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKY 105 (199)
T ss_pred ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCc
Confidence 566777765 46677888888887654
No 213
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=23.56 E-value=86 Score=25.17 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEEe
Q 026024 185 IGITVDDVYKACERFERLGVEFAK 208 (244)
Q Consensus 185 i~f~VdDvd~~~~rl~~~Gv~v~~ 208 (244)
+=+.|.|++.+.++|++.|.....
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~ 29 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIK 29 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccccc
Confidence 446778999999999999976543
No 214
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=23.25 E-value=79 Score=23.59 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=30.9
Q ss_pred EEeCCHHHHHHHHHHCCCeEEecCCCCCc--ce-EEEEECCCCCEEEEEec
Q 026024 187 ITVDDVYKACERFERLGVEFAKKPDGGKL--KG-VAFIKDPDDYWIEIFDL 234 (244)
Q Consensus 187 f~VdDvd~~~~rl~~~Gv~v~~~p~~g~~--~~-~~~~~DPdG~~IEi~e~ 234 (244)
+++.++.+.+.+++..| .+.-.-..+.. +. ++...|++|.+++-...
T Consensus 21 ~Qik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M 70 (109)
T PF06923_consen 21 FQIKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIM 70 (109)
T ss_pred HHHHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEE
Confidence 34557888999999999 44332222332 22 56678999999887654
No 215
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=21.79 E-value=2e+02 Score=19.97 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=15.9
Q ss_pred EEcCCHHHHHHHHHhccCCEEEEe
Q 026024 93 FRIKDPKVSLDFYSRVLGMSLLKR 116 (244)
Q Consensus 93 L~V~Dle~a~~FY~~vLG~~~~~~ 116 (244)
....+=+.|.++|++ |||+...+
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 344577889999965 99998865
No 216
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=20.72 E-value=1e+02 Score=23.66 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=21.2
Q ss_pred EEEEEEEcCCHHHHHHHHHhccCCEEE
Q 026024 88 MQQTMFRIKDPKVSLDFYSRVLGMSLL 114 (244)
Q Consensus 88 l~Hv~L~V~Dle~a~~FY~~vLG~~~~ 114 (244)
-+|+.+...|..+.++-..+.||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 579999999999999999999999876
No 217
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.70 E-value=1.6e+02 Score=19.37 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=20.7
Q ss_pred cceEEEEEeC---CHHHHHHHHHHCCCeEE
Q 026024 181 GFGHIGITVD---DVYKACERFERLGVEFA 207 (244)
Q Consensus 181 g~~hi~f~Vd---Dvd~~~~rl~~~Gv~v~ 207 (244)
+..++.+++. +++++.+.|+++|+.+.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 3357788885 47888999999998753
No 218
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.55 E-value=2.1e+02 Score=18.07 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=17.6
Q ss_pred EEEEEeCC---HHHHHHHHHHCCCeEE
Q 026024 184 HIGITVDD---VYKACERFERLGVEFA 207 (244)
Q Consensus 184 hi~f~VdD---vd~~~~rl~~~Gv~v~ 207 (244)
++.+.+.| ++.+.+.|++.|+++.
T Consensus 46 ~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 46 ELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 45555554 5688999999998864
No 219
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=20.20 E-value=2.9e+02 Score=18.72 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCeEEecCCCCCcceEEEEECCCCCEEEEE
Q 026024 192 VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 232 (244)
Q Consensus 192 vd~~~~rl~~~Gv~v~~~p~~g~~~~~~~~~DPdG~~IEi~ 232 (244)
..++.+.|+..|......- |.+ ..++-|||..+-+-
T Consensus 9 ~ke~ik~Le~~Gf~~vrqk--GSH---~q~kHp~~~~vtVP 44 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQK--GSH---RQYKHPDGGRVTVP 44 (66)
T ss_pred HHHHHHHHHhCCcEEEEee--cce---eEEEcCCCCEEEec
Confidence 4667888999999887655 333 45688998887665
Done!