Query 026025
Match_columns 244
No_of_seqs 152 out of 1420
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03201 RAB geranylgeranyl tr 100.0 1.8E-59 3.9E-64 408.0 23.2 240 1-240 5-244 (316)
2 PLN02710 farnesyltranstransfer 100.0 9.5E-59 2E-63 412.9 23.6 237 2-239 42-282 (439)
3 KOG0366 Protein geranylgeranyl 100.0 3.4E-58 7.4E-63 374.1 17.5 236 3-238 17-252 (329)
4 cd02893 FTase Protein farnesyl 100.0 1.5E-55 3.3E-60 381.2 22.4 232 6-239 1-238 (299)
5 cd02894 GGTase-II Geranylgeran 100.0 2.5E-55 5.5E-60 378.6 23.0 236 4-239 1-239 (287)
6 cd02895 GGTase-I Geranylgerany 100.0 6.6E-53 1.4E-57 365.7 21.9 232 6-239 1-259 (307)
7 KOG0365 Beta subunit of farnes 100.0 1E-52 2.2E-57 353.6 16.5 232 6-239 74-311 (423)
8 cd02895 GGTase-I Geranylgerany 100.0 2.4E-51 5.2E-56 356.0 22.9 236 3-238 48-307 (307)
9 cd02894 GGTase-II Geranylgeran 100.0 3E-51 6.4E-56 353.3 22.9 236 3-238 48-287 (287)
10 COG5029 CAL1 Prenyltransferase 100.0 4.7E-52 1E-56 346.7 16.1 235 3-237 25-264 (342)
11 cd02890 PTase Protein prenyltr 100.0 4E-51 8.7E-56 352.6 22.5 233 6-239 1-238 (286)
12 PLN03201 RAB geranylgeranyl tr 100.0 2.1E-49 4.5E-54 345.0 22.5 238 3-240 55-293 (316)
13 cd02890 PTase Protein prenyltr 100.0 1.5E-48 3.3E-53 336.5 23.2 236 3-238 46-286 (286)
14 KOG0367 Protein geranylgeranyl 100.0 2.3E-48 4.9E-53 321.7 17.7 234 3-238 10-270 (347)
15 cd02893 FTase Protein farnesyl 100.0 5.5E-47 1.2E-51 327.8 22.3 235 3-237 46-298 (299)
16 PLN02710 farnesyltranstransfer 100.0 4.5E-47 9.7E-52 338.2 22.3 238 3-240 91-391 (439)
17 KOG0366 Protein geranylgeranyl 100.0 2.8E-42 6.1E-47 281.1 19.2 238 2-239 64-302 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 1.7E-40 3.7E-45 277.5 16.2 239 4-242 75-318 (342)
19 KOG0367 Protein geranylgeranyl 100.0 1.2E-35 2.6E-40 246.2 19.2 239 3-241 57-322 (347)
20 KOG0365 Beta subunit of farnes 100.0 1.4E-33 3E-38 238.1 16.4 231 6-236 122-367 (423)
21 cd00688 ISOPREN_C2_like This g 100.0 6.2E-31 1.4E-35 224.6 21.3 233 4-238 52-300 (300)
22 cd00688 ISOPREN_C2_like This g 100.0 3.7E-28 8E-33 207.4 20.0 229 7-238 2-251 (300)
23 TIGR03463 osq_cycl 2,3-oxidosq 100.0 4.8E-27 1E-31 221.1 19.7 232 6-238 330-634 (634)
24 TIGR01507 hopene_cyclase squal 99.9 3E-26 6.6E-31 215.5 21.2 234 6-240 338-631 (635)
25 PLN02993 lupeol synthase 99.9 1.2E-25 2.7E-30 212.1 19.6 235 6-241 441-755 (763)
26 cd02892 SQCY_1 Squalene cyclas 99.9 5.3E-25 1.1E-29 208.4 20.7 232 6-238 331-634 (634)
27 PLN03012 Camelliol C synthase 99.9 4.3E-25 9.2E-30 208.1 18.7 235 6-241 441-755 (759)
28 TIGR01787 squalene_cyclas squa 99.9 2.2E-24 4.8E-29 202.8 19.1 234 6-240 321-621 (621)
29 cd02889 SQCY Squalene cyclase 99.9 1.5E-23 3.2E-28 185.3 18.9 212 5-217 47-318 (348)
30 cd02889 SQCY Squalene cyclase 99.9 2.2E-23 4.7E-28 184.2 18.8 229 6-238 1-291 (348)
31 COG1689 Uncharacterized protei 99.9 2.7E-22 5.8E-27 160.2 13.1 223 3-237 5-270 (274)
32 PF13249 Prenyltrans_2: Prenyl 99.9 5.2E-22 1.1E-26 147.7 8.5 109 58-169 1-113 (113)
33 TIGR03463 osq_cycl 2,3-oxidosq 99.9 4.3E-20 9.3E-25 174.2 19.9 231 6-238 278-577 (634)
34 cd02892 SQCY_1 Squalene cyclas 99.8 1.3E-19 2.7E-24 171.8 20.0 231 6-238 280-577 (634)
35 PF13249 Prenyltrans_2: Prenyl 99.8 1E-20 2.2E-25 140.7 9.6 108 106-216 1-112 (113)
36 TIGR01507 hopene_cyclase squal 99.8 4.8E-19 1E-23 167.0 21.3 232 6-239 289-572 (635)
37 TIGR01787 squalene_cyclas squa 99.8 3.8E-18 8.3E-23 160.8 18.6 230 6-238 269-561 (621)
38 PLN02993 lupeol synthase 99.8 7.7E-18 1.7E-22 159.6 17.8 208 30-238 415-693 (763)
39 cd02896 complement_C3_C4_C5 Pr 99.8 1.2E-17 2.7E-22 144.7 16.9 197 6-217 54-283 (297)
40 cd02897 A2M_2 Proteins similar 99.8 6.8E-17 1.5E-21 139.8 19.5 213 6-238 44-292 (292)
41 PLN03012 Camelliol C synthase 99.7 1.4E-16 3.1E-21 150.8 16.0 165 5-170 514-723 (759)
42 COG1689 Uncharacterized protei 99.6 2.9E-14 6.3E-19 114.4 13.5 151 30-191 120-272 (274)
43 KOG0497 Oxidosqualene-lanoster 99.6 5.5E-14 1.2E-18 129.2 14.3 201 36-240 487-753 (760)
44 cd02896 complement_C3_C4_C5 Pr 99.5 1E-12 2.2E-17 114.0 15.2 170 54-236 54-256 (297)
45 PF00432 Prenyltrans: Prenyltr 99.4 1.5E-13 3.4E-18 84.8 5.1 44 148-191 1-44 (44)
46 cd02891 A2M_like Proteins simi 99.4 1.6E-11 3.4E-16 105.4 18.7 211 6-237 51-281 (282)
47 PF13243 Prenyltrans_1: Prenyl 99.4 1.5E-13 3.3E-18 101.5 3.3 105 102-210 1-107 (109)
48 cd02897 A2M_2 Proteins similar 99.4 3.1E-11 6.8E-16 104.4 17.3 168 36-216 26-218 (292)
49 PF00432 Prenyltrans: Prenyltr 99.3 5.4E-12 1.2E-16 77.9 4.6 44 100-143 1-44 (44)
50 PF13243 Prenyltrans_1: Prenyl 99.3 6.3E-12 1.4E-16 92.8 5.3 104 55-162 2-107 (109)
51 PF07678 A2M_comp: A-macroglob 99.2 1.8E-10 3.9E-15 97.4 12.3 205 10-238 3-244 (246)
52 COG1657 SqhC Squalene cyclase 99.2 1.2E-10 2.5E-15 106.0 8.5 217 19-241 248-513 (517)
53 cd02891 A2M_like Proteins simi 99.1 2.7E-09 5.9E-14 91.5 15.5 144 53-208 50-206 (282)
54 KOG0497 Oxidosqualene-lanoster 99.1 5.7E-10 1.2E-14 103.2 9.0 114 6-121 591-721 (760)
55 PF07678 A2M_comp: A-macroglob 98.6 6.2E-07 1.4E-11 75.8 11.0 150 57-218 2-171 (246)
56 COG1657 SqhC Squalene cyclase 98.5 2E-07 4.4E-12 85.2 6.1 170 57-229 238-434 (517)
57 TIGR02474 pec_lyase pectate ly 98.0 9.3E-05 2E-09 63.4 11.8 128 82-209 44-219 (290)
58 TIGR02474 pec_lyase pectate ly 97.6 0.00029 6.3E-09 60.4 8.4 112 53-164 68-222 (290)
59 PLN02279 ent-kaur-16-ene synth 97.5 0.0038 8.3E-08 60.9 14.7 99 4-111 33-135 (784)
60 PLN02592 ent-copalyl diphospha 97.4 0.0038 8.3E-08 60.8 13.8 80 31-112 95-176 (800)
61 KOG1366 Alpha-macroglobulin [P 97.3 0.0047 1E-07 63.7 13.1 197 36-242 948-1214(1436)
62 PF09492 Pec_lyase: Pectic aci 96.4 0.0095 2.1E-07 51.2 6.3 130 82-211 39-216 (289)
63 KOG1366 Alpha-macroglobulin [P 96.0 0.11 2.4E-06 53.9 12.9 69 6-74 966-1046(1436)
64 PLN02592 ent-copalyl diphospha 95.9 0.33 7.1E-06 47.7 14.7 77 135-219 316-395 (800)
65 PLN02279 ent-kaur-16-ene synth 94.9 1.8 3.8E-05 42.7 16.2 55 8-63 77-135 (784)
66 PF09492 Pec_lyase: Pectic aci 93.7 0.28 6.1E-06 42.3 7.1 115 53-167 63-220 (289)
67 PF05817 Ribophorin_II: Oligos 92.5 5.7 0.00012 38.3 14.7 131 30-191 46-177 (636)
68 PF01122 Cobalamin_bind: Eukar 90.4 1.4 3E-05 38.7 7.6 111 36-169 189-312 (326)
69 PF01122 Cobalamin_bind: Eukar 89.8 1.6 3.6E-05 38.3 7.6 61 149-217 216-279 (326)
70 PF05817 Ribophorin_II: Oligos 74.6 87 0.0019 30.4 15.3 170 32-236 86-268 (636)
71 TIGR01577 oligosac_amyl oligos 69.3 1.1E+02 0.0024 29.4 15.8 63 153-215 502-582 (616)
72 PF07944 DUF1680: Putative gly 63.7 1.3E+02 0.0029 28.2 11.8 24 53-76 84-107 (520)
73 PF07470 Glyco_hydro_88: Glyco 46.0 1E+02 0.0023 26.8 7.6 65 150-214 217-294 (336)
74 PF07470 Glyco_hydro_88: Glyco 37.5 1.1E+02 0.0024 26.7 6.4 86 33-118 186-294 (336)
75 PF15144 DUF4576: Domain of un 36.4 58 0.0012 22.3 3.3 32 139-173 50-81 (88)
76 PRK13617 psbV cytochrome c-550 33.3 60 0.0013 25.8 3.5 64 50-121 98-165 (170)
77 COG2373 Large extracellular al 32.7 61 0.0013 35.0 4.4 44 149-192 1200-1244(1621)
78 PF10022 DUF2264: Uncharacteri 31.2 3.9E+02 0.0085 24.0 18.9 176 50-235 130-341 (361)
79 COG2373 Large extracellular al 30.6 57 0.0012 35.2 3.8 43 53-95 1200-1243(1621)
80 TIGR01535 glucan_glucosid gluc 30.6 58 0.0013 31.7 3.6 82 30-113 294-386 (648)
81 PRK13621 psbV cytochrome c-550 28.1 1.5E+02 0.0032 23.6 4.9 53 102-170 109-164 (170)
82 TIGR01577 oligosac_amyl oligos 25.9 6E+02 0.013 24.4 10.4 44 78-121 530-584 (616)
83 TIGR03046 PS_II_psbV2 photosys 20.9 1.3E+02 0.0028 23.6 3.3 52 149-217 97-152 (155)
84 PF07944 DUF1680: Putative gly 20.8 2E+02 0.0044 27.0 5.3 23 149-171 84-106 (520)
85 PRK13621 psbV cytochrome c-550 20.2 1.5E+02 0.0032 23.6 3.5 26 97-122 139-164 (170)
No 1
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.8e-59 Score=408.04 Aligned_cols=240 Identities=78% Similarity=1.345 Sum_probs=227.7
Q ss_pred CccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (244)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (244)
|.++.+++|++||+++++.+++|.+...++++++.+||++.+|++|+.....+++++++||++||+++|||++.+++++|
T Consensus 5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h 84 (316)
T PLN03201 5 MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPH 84 (316)
T ss_pred hhhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence 56899999999999999999999877778899999999999999999876778999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~ 160 (244)
+.+||+|+++|.++++.+.+|++++++||.++|++||||.++++++.|+++||||++++.+++.++.++++++++||++|
T Consensus 85 ~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~sc 164 (316)
T PLN03201 85 ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSC 164 (316)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999999999999999999999999999999987778999999999999
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR 240 (244)
Q Consensus 161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~ 240 (244)
|++||||+.+|++|+|+++||||+++|.+++..+.+|.+++++||++||..+|||+|||||.+|+|||||.+..|..+.+
T Consensus 165 q~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~ 244 (316)
T PLN03201 165 KNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDR 244 (316)
T ss_pred cCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999888899999999999998899999999999999999999988877643
No 2
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=9.5e-59 Score=412.91 Aligned_cols=237 Identities=30% Similarity=0.495 Sum_probs=221.2
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (244)
Q Consensus 2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (244)
-+|.+++|++|++++..+ -+..+...|.+++|.+||++.+|++||.. .+++++++++||.+||+++|||++.|++++|
T Consensus 42 ~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~h 120 (439)
T PLN02710 42 LELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPH 120 (439)
T ss_pred ccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCcc
Confidence 468999999999987664 55567777899999999999999999983 4557899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcC---CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHH
Q 026025 81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i 157 (244)
+..||+|+.+|.++++ ++.+|++++++||.++|++||||.+.+++|+|+++||||++++.+++.++..+++++++||
T Consensus 121 l~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I 200 (439)
T PLN02710 121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYI 200 (439)
T ss_pred HHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHH
Confidence 9999999999999985 5678999999999999999999999999999999999999999999988888899999999
Q ss_pred HhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhh
Q 026025 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEH 237 (244)
Q Consensus 158 ~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~ 237 (244)
++||++||||+..|+.|+|+++||||+++|.+|+..+.+|.+++++||++||..+|||+|||||.+|+|||||.+.+|..
T Consensus 201 ~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~l 280 (439)
T PLN02710 201 LSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL 280 (439)
T ss_pred HHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999998888776
Q ss_pred hh
Q 026025 238 SC 239 (244)
Q Consensus 238 ~~ 239 (244)
+.
T Consensus 281 L~ 282 (439)
T PLN02710 281 LQ 282 (439)
T ss_pred HH
Confidence 64
No 3
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-58 Score=374.11 Aligned_cols=236 Identities=66% Similarity=1.181 Sum_probs=227.5
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (244)
+|.++||++||++.-.+..+|.++..++-+++++||.+.+|++++.....++++++.|+++||+++|||++.||++||+.
T Consensus 17 ~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll 96 (329)
T KOG0366|consen 17 ELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLL 96 (329)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHH
Confidence 57889999999998888888999999999999999999999999998777899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (244)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~ 162 (244)
+|++|+++|++.+.++.+|++++..|+..+|++||+|.+.-.+|.|+|++|||+++|++|+.++.+++|++++|+++|-|
T Consensus 97 ~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN 176 (329)
T KOG0366|consen 97 YTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN 176 (329)
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhh
Q 026025 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~ 238 (244)
-||||+.+||.|||++..||++++|+++++++.+|.+.+-+||..||.+.||.+|||.|.||+|||||+|.-|..+
T Consensus 177 ~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~ii 252 (329)
T KOG0366|consen 177 FDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAII 252 (329)
T ss_pred cCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877543
No 4
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=1.5e-55 Score=381.15 Aligned_cols=232 Identities=37% Similarity=0.633 Sum_probs=214.0
Q ss_pred HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhh
Q 026025 6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY 83 (244)
Q Consensus 6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~-~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~ 83 (244)
+++|++|++++.. .+++|. ..+.++++.+||++.+|++|+. ...+.++++++||++||++||||++.++.++|+.+
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~--~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~ 78 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFT--SLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT 78 (299)
T ss_pred ChHHHHHHHHHhhcCCcccc--ccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence 5899999999877 445544 4478899999999999999997 34456899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025 84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (244)
Q Consensus 84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~ 160 (244)
||+|+++|.+++. .+.+|++++++||.++|++||||...+.+|+|+++||||++++.+++.+++.+++++++||++|
T Consensus 79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c 158 (299)
T cd02893 79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC 158 (299)
T ss_pred HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence 9999999999986 4567899999999999999999999999999999999999999999988778899999999999
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccccc-CccccCCCCCCCCccccchhhHhhhhhh
Q 026025 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
|++||||+..|+.|+|+++||||+++|.+++..+.++.+++++||++||.+ +|||+|||+|.+|+|||||.+..|..+.
T Consensus 159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~ 238 (299)
T cd02893 159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILE 238 (299)
T ss_pred CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998889999999999999966 9999999999999999999988887664
No 5
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.5e-55 Score=378.61 Aligned_cols=236 Identities=60% Similarity=1.126 Sum_probs=222.3
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcc-cCCCCcCCCCCCCCchh
Q 026025 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVL 82 (244)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~ 82 (244)
|++++|++|++++.+...++.+...|.++++.+||++++|++|+.....+++++++||++|| +++|||++.+++++|+.
T Consensus 1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~ 80 (287)
T cd02894 1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL 80 (287)
T ss_pred CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence 57899999999999976677888889999999999999999999876668999999999999 78999999999999999
Q ss_pred hHHHHHHHHHHhcCCCccC--HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025 83 YTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (244)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~--~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~ 160 (244)
+||+|+.+|.+++.++.++ ++++++||.++|++||||.+.+.+++|+++||||++++.+++..+.++++++++||++|
T Consensus 81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~ 160 (287)
T cd02894 81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC 160 (287)
T ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence 9999999999988767777 89999999999999999999999999999999999999999987788999999999999
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
|++||||+.+|++++|+++||||+++|.+++..+.++.+++++||++||.++|||++||+|.+|+||+||++..|..+-
T Consensus 161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~ 239 (287)
T cd02894 161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIG 239 (287)
T ss_pred CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhc
Confidence 9999999999999999999999999999999988899999999999999999999999999999999999999886653
No 6
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=6.6e-53 Score=365.74 Aligned_cols=232 Identities=33% Similarity=0.546 Sum_probs=210.5
Q ss_pred HHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcc----cCCCCcCCCCC-
Q 026025 6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQ----DESGGFAGNIG- 76 (244)
Q Consensus 6 ~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q----~~dGgf~~~~~- 76 (244)
+++|++|++++.++ +.+ +...|.++++.+||++.+|++|+... .++++++++||.+|| +++|||++.++
T Consensus 1 ~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~ 78 (307)
T cd02895 1 KKKHVKFFQRCLQLLPSS--YQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTL 78 (307)
T ss_pred ChHHHHHHHHHhhhCCch--hhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence 47999999998763 333 45558899999999999999999764 467899999999999 99999999876
Q ss_pred ---------CCCchhhHHHHHHHHHHhcC-CCccCHHHHHHHHHhccCCCCCccCCC---CCCCChhhHHHHHHHHHhhc
Q 026025 77 ---------HDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI---WGEVDTRFSYIAICCLSILQ 143 (244)
Q Consensus 77 ---------~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~---~~~~d~~~ty~al~~l~~l~ 143 (244)
.++|+..||+|+.+|.++++ .+.+|++++++||.++|++||||...+ .+|+|+++||||++++.+++
T Consensus 79 ~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 79 GLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred ccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 47999999999999999975 456789999999999999999999987 78999999999999999999
Q ss_pred cCC--hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC---CCCHHHHHHHHHcccccCccccCC
Q 026025 144 RLD--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---HVDKDLLGWWLCERQVKSGGLNGR 218 (244)
Q Consensus 144 ~~~--~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~---~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (244)
..+ .++++++++||++||++||||+..|+.|+|+++||||+++|.+++..+ .++.+++++||++||..+|||++|
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr 238 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR 238 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 865 578999999999999999999999999999999999999999999875 688999999999999999999999
Q ss_pred CCCCCCccccchhhHhhhhhh
Q 026025 219 PEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 219 ~~~~~d~~ys~~~l~~l~~~~ 239 (244)
|+|.+|+||+||.+.+|..+.
T Consensus 239 ~~k~~D~cysfw~~a~L~iL~ 259 (307)
T cd02895 239 PNKPADTCYSFWVGASLKLLD 259 (307)
T ss_pred CCCCCccchhhHHHHHHHHcC
Confidence 999999999999998887663
No 7
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-52 Score=353.58 Aligned_cols=232 Identities=29% Similarity=0.516 Sum_probs=211.8
Q ss_pred HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhh
Q 026025 6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY 83 (244)
Q Consensus 6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~ 83 (244)
+++|.+||.+..+ -+..|. ..|.++.|.+||.+.+|++|+.. +....+++|+||..||.|.|||++.||+.+|+..
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~~--~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~ 151 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQYT--CLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAP 151 (423)
T ss_pred HHHHHHHHHHHHHhCCCccc--ccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhH
Confidence 8999999998644 333444 44799999999999999999964 3446789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025 84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (244)
Q Consensus 84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~ 160 (244)
||+||.+|.+++. ++.|+++++..||.+++++||||..+.++|.|+|.+|||+++.+++|...+.-.|.+.+||.+|
T Consensus 152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~C 231 (423)
T KOG0365|consen 152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASC 231 (423)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Confidence 9999999999975 5678999999999999999999999999999999999999999999998777789999999999
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
|+.+|||+..|+.|+|++|||||+|+|++|+..+..+.+.+.+|..+|| ..+|||+||.||.+|.|||||...+.-.+.
T Consensus 232 QtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~ 311 (423)
T KOG0365|consen 232 QTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQ 311 (423)
T ss_pred ccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHH
Confidence 9999999999999999999999999999999999999999999999999 589999999999999999999876654443
No 8
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=2.4e-51 Score=355.96 Aligned_cols=236 Identities=22% Similarity=0.309 Sum_probs=219.4
Q ss_pred cccHHHHHHHHHHcc----cCCCCcccccc----------ccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccC
Q 026025 3 ELAADKHVKYIISVE----KKKDSFESVVM----------EHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDE 67 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q----~~dg~~~~~~~----------~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~ 67 (244)
++++++.++||.++| +++|+|..... +.++++.||||+.+|.+|+.+ ..++++++++||++||++
T Consensus 48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~ 127 (307)
T cd02895 48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP 127 (307)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence 678899999999999 99999976543 579999999999999999864 245899999999999999
Q ss_pred CCCcCCCC---CCCCchhhHHHHHHHHHHhcCCC--ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhh
Q 026025 68 SGGFAGNI---GHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142 (244)
Q Consensus 68 dGgf~~~~---~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l 142 (244)
||||+..+ +.++|+..||+|+.++.+++..+ .+|++++++||.+||++||||+..|+.|+|.++||||+++|.++
T Consensus 128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL 207 (307)
T cd02895 128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLL 207 (307)
T ss_pred CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHc
Confidence 99999987 78999999999999999998766 57899999999999999999999999999999999999999999
Q ss_pred ccCC---hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCC
Q 026025 143 QRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGR 218 (244)
Q Consensus 143 ~~~~---~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~ 218 (244)
+.++ .++.+++++||++||+++|||+.+|++++|++||||++++|.+++..+.+|.+++.+||++|| ..+|||+++
T Consensus 208 ~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~ 287 (307)
T cd02895 208 GKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKN 287 (307)
T ss_pred CCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCC
Confidence 9865 678999999999999999999999999999999999999999999988899999999999988 679999999
Q ss_pred CCCCCCccccchhhHhhhhh
Q 026025 219 PEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 219 ~~~~~d~~ys~~~l~~l~~~ 238 (244)
|++.||.|||||+|..|..+
T Consensus 288 p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 288 PDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCCChhHHHHHHHHHHhC
Confidence 99999999999999998753
No 9
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=3e-51 Score=353.29 Aligned_cols=236 Identities=22% Similarity=0.335 Sum_probs=220.9
Q ss_pred cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCCCCcC--HHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025 3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDESGGFAGNIGHDP 79 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (244)
+++++++++||+++| +++|+|......++++..||.|+.+|.+++....++ ++++++||+++|++||||+..++.++
T Consensus 48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~ 127 (287)
T cd02894 48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEV 127 (287)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCc
Confidence 468899999999999 679999877666788999999999999987544445 89999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (244)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~ 159 (244)
|+..||+|+++|.+++..+.++++++++||.++|++||||++++++++|+++|||++++|.++|..+.++++++++||.+
T Consensus 128 d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~ 207 (287)
T cd02894 128 DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCE 207 (287)
T ss_pred hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999999999999998877899999999999
Q ss_pred cCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhh
Q 026025 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 160 ~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~ 238 (244)
||+++|||+.+|++++|++||||++++|.+++..+.++.+++.+||+++| .++|||+++|++.+|+|||||+|..|..+
T Consensus 208 ~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 208 RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 99999999999999999999999999999999887889999999999999 68999999999999999999999999764
No 10
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-52 Score=346.71 Aligned_cols=235 Identities=42% Similarity=0.688 Sum_probs=218.8
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCCCCcCCCCCCCCch
Q 026025 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~ 81 (244)
.|..++|++|+.+.-...-.+.++..+..+++.+||...++.+++... .+..++.+-+++.|+.++|||++.|++++|+
T Consensus 25 ~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL 104 (342)
T COG5029 25 QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHL 104 (342)
T ss_pred ccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhH
Confidence 467899999999987776667788888999999999999999999865 5688999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHH
Q 026025 82 LYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV 158 (244)
Q Consensus 82 ~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~ 158 (244)
.+|++||++|.+++.+ ++++++++.+||..+|++||+|.....+|+|.+..|+|+.+++++|.++..+.|.+++||+
T Consensus 105 ~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~ 184 (342)
T COG5029 105 ASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLK 184 (342)
T ss_pred HHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 9999999999999754 5667888999999999999999998889999999999999999999988889999999999
Q ss_pred hcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCC-HHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhh
Q 026025 159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD-KDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEH 237 (244)
Q Consensus 159 ~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~-~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~ 237 (244)
+|||.||||+..|+.|+|+++||||+++|++++.++.++ ++++++||.+||-+.|||+||+||.+|+||+||++.-|-.
T Consensus 185 kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~i 264 (342)
T COG5029 185 KCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAI 264 (342)
T ss_pred HhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHHh
Confidence 999999999999999999999999999999999999888 7999999999999999999999999999999998765543
No 11
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=4e-51 Score=352.59 Aligned_cols=233 Identities=43% Similarity=0.758 Sum_probs=217.4
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcc-cCCCCcCCCCCCCCchhh
Q 026025 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY 83 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~-~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~~ 83 (244)
+++|++||++.++.+ ++.....++++++.+||++++|++||. .+..+++++++||++|| ++||||+..++.++|+..
T Consensus 1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~ 79 (286)
T cd02890 1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS 79 (286)
T ss_pred ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence 489999999999976 677777789999999999999999998 34568999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhcC--CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcC
Q 026025 84 TLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (244)
Q Consensus 84 T~~al~~L~~l~~--~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q 161 (244)
||+|+.+|.++++ .+.++++++++||.++|++||||...+.+++|+++|||+++++.+++.....+++++++||++||
T Consensus 80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 159 (286)
T cd02890 80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ 159 (286)
T ss_pred HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence 9999999999987 57778999999999999999999999989999999999999999999876678999999999999
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCc-cccCCCCCCCCccccchhhHhhhhhh
Q 026025 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 162 ~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~G-Gf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
++||||+.+|+.++|+.+||||+++|.+++..+.++++++++||++||..+| ||+++|+|.+|+||+||++.+|..+.
T Consensus 160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~ 238 (286)
T cd02890 160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILG 238 (286)
T ss_pred CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcc
Confidence 9999999999999999999999999999999888999999999999998777 99999999999999999988887664
No 12
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=2.1e-49 Score=344.97 Aligned_cols=238 Identities=21% Similarity=0.321 Sum_probs=224.0
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (244)
++++++.++||.++|+++|+|.....+++++..||.|+.+|.+++....++++++++||.++|++||||+..++.+.|+.
T Consensus 55 ~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r 134 (316)
T PLN03201 55 DVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTR 134 (316)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHH
Confidence 46889999999999999999988777778999999999999999766556889999999999999999999888999999
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (244)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~ 162 (244)
.||+|++++.+++..+.++++++++||.+||++||||+.+|++|+|..+|||++++|.+++.++.++.+++++||.+||+
T Consensus 135 ~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~ 214 (316)
T PLN03201 135 FSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV 214 (316)
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC
Confidence 99999999999998877889999999999999999999999999999999999999999998777788999999999999
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccc-cCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGIFSQPNLMMEHSCR 240 (244)
Q Consensus 163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~ 240 (244)
++|||+.+|++++|++||||++++|.++++.+.+|.+++.+||++||. ..|||+++|++.||.||||+.|..|.++..
T Consensus 215 ~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~ 293 (316)
T PLN03201 215 KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGY 293 (316)
T ss_pred CCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999888999999999999995 589999999999999999999999988743
No 13
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.5e-48 Score=336.54 Aligned_cols=236 Identities=25% Similarity=0.424 Sum_probs=221.3
Q ss_pred cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025 3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (244)
+.+++++++||+++| ++||+|.....+++++..||+|+.+|.+++.. .+.+++++++||.++|++||||...++.++
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~ 125 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEV 125 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCc
Confidence 467899999999999 99999998777789999999999999999973 456789999999999999999999888899
Q ss_pred chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (244)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~ 159 (244)
|+..||+|+.+|.+++.....+++++++||.++|++||||+.+|++++|+++|||++++|.+++..+.++++++++||++
T Consensus 126 d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~ 205 (286)
T cd02890 126 DTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE 205 (286)
T ss_pred hHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 99999999999999998777789999999999999999999999999999999999999999999878899999999999
Q ss_pred cCCCCC-CCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHH-cccccCccccCCCCCCCCccccchhhHhhhh
Q 026025 160 CKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC-ERQVKSGGLNGRPEKLPDVGIFSQPNLMMEH 237 (244)
Q Consensus 160 ~Q~~dG-Gf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~-~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~ 237 (244)
||+++| ||+.+|++++|++||||++++|.+++..+.++.+++.+||+ .+|.++|||+++|++.+|+|||||+|..|..
T Consensus 206 ~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl 285 (286)
T cd02890 206 RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSL 285 (286)
T ss_pred hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHc
Confidence 999997 99999999999999999999999999887789999999999 5679999999999999999999999999976
Q ss_pred h
Q 026025 238 S 238 (244)
Q Consensus 238 ~ 238 (244)
+
T Consensus 286 ~ 286 (286)
T cd02890 286 L 286 (286)
T ss_pred C
Confidence 3
No 14
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-48 Score=321.71 Aligned_cols=234 Identities=32% Similarity=0.559 Sum_probs=204.0
Q ss_pred cccHHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCC--------CCcCC
Q 026025 3 ELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES--------GGFAG 73 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~d--------Ggf~~ 73 (244)
++.++||++|+++..+ -+-+|. ..|.+++..++|++++|++|+..+.++++..++||.+.|-.. -||.+
T Consensus 10 ~~~~~kH~~ff~RhL~llP~~y~--shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G 87 (347)
T KOG0367|consen 10 RFERKKHIKFFERHLQLLPSPYQ--SHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG 87 (347)
T ss_pred hhhHHHHHHHHHHHHHhCCCccc--ccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence 6789999999999765 454444 446788989999999999999987778999999999987321 24433
Q ss_pred C----------CCCCCchhhHHHHHHHHHHhcC-CCccCHHHHHHHHHhccCCCCCccCCC-CCCCChhhHHHHHHHHHh
Q 026025 74 N----------IGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYIAICCLSI 141 (244)
Q Consensus 74 ~----------~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~-~~~~d~~~ty~al~~l~~ 141 (244)
. +-.+||+..||+++..|.++++ ++.+|++.+++++..+|++||+|...+ ++++|+|++|||++++.+
T Consensus 88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ym 167 (347)
T KOG0367|consen 88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYM 167 (347)
T ss_pred eccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHH
Confidence 2 1246899999999999999975 678899999999999999999998644 678999999999999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC--C----CCCHHHHHHHHHcccccCccc
Q 026025 142 LQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--H----HVDKDLLGWWLCERQVKSGGL 215 (244)
Q Consensus 142 l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~--~----~~~~~~~~~wL~~~Q~~~GGf 215 (244)
|+.+..++.++++.||++||++||||+..|++|+|+++||||+++|++++++ + ..+++++++|+.+||..+|||
T Consensus 168 Ld~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGf 247 (347)
T KOG0367|consen 168 LDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGF 247 (347)
T ss_pred hccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCc
Confidence 9988889999999999999999999999999999999999999999999986 2 245899999999999999999
Q ss_pred cCCCCCCCCccccchhhHhhhhh
Q 026025 216 NGRPEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 216 ~~~~~~~~d~~ys~~~l~~l~~~ 238 (244)
+||+||++|+||+||.+..|-++
T Consensus 248 qGR~NKp~DTCYaFWigasLklL 270 (347)
T KOG0367|consen 248 QGRTNKPVDTCYAFWIGASLKLL 270 (347)
T ss_pred CCCCCCCchhHHHHHHHHHHHHc
Confidence 99999999999999988777554
No 15
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=5.5e-47 Score=327.75 Aligned_cols=235 Identities=22% Similarity=0.326 Sum_probs=218.3
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (244)
++++++.++||.++|+++|+|.....+++++..||+|+.+|.+++.+ ...+++++++||.+||++||||+..++.++
T Consensus 46 ~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~ 125 (299)
T cd02893 46 QSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEV 125 (299)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence 45689999999999999999988777789999999999999999974 245788999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (244)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~ 159 (244)
|+..||+|+.++.+++..+..+++++++||.+||++||||+++|++|+|.++|||++++|.+++..+.++++++++||++
T Consensus 126 D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~ 205 (299)
T cd02893 126 DVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVA 205 (299)
T ss_pred hHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHh
Confidence 99999999999999998777789999999999999999999999999999999999999999998877899999999999
Q ss_pred cCCC-CCCCCCCCCCCcchhHHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHccc-ccCccccCCCCCCCC
Q 026025 160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPD 224 (244)
Q Consensus 160 ~Q~~-dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d 224 (244)
+|++ +|||..+|++++|++||||++++|.+++.. ..++.+++.+||+.+| ..+|||+++|++.+|
T Consensus 206 ~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D 285 (299)
T cd02893 206 RQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRD 285 (299)
T ss_pred hcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCC
Confidence 9987 999999999999999999999999999864 3478999999999765 889999999999999
Q ss_pred ccccchhhHhhhh
Q 026025 225 VGIFSQPNLMMEH 237 (244)
Q Consensus 225 ~~ys~~~l~~l~~ 237 (244)
+++|+.+|..|..
T Consensus 286 ~yHT~~~l~~Lsl 298 (299)
T cd02893 286 FYHTCYALSGLSI 298 (299)
T ss_pred chhHHHHHHHHhc
Confidence 9999999999875
No 16
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=4.5e-47 Score=338.15 Aligned_cols=238 Identities=18% Similarity=0.287 Sum_probs=219.0
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (244)
+.++++.++||.++|+++|+|....++.+++..||+|+.+|.+||.+ ..++++++++||++||++||||+..++.++
T Consensus 91 ~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~ 170 (439)
T PLN02710 91 DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEM 170 (439)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCC
Confidence 45778999999999999999998888889999999999999999964 346899999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (244)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~ 159 (244)
|+..||+|++++.+++.++..+++++++||.+||+.||||+++|+.|+|.++|||++++|.+||.++.++.+++++||.+
T Consensus 171 D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~ 250 (439)
T PLN02710 171 DVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVF 250 (439)
T ss_pred CcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHH
Confidence 99999999999999998877789999999999999999999999999999999999999999999888899999999999
Q ss_pred cCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC---------------------------------------------
Q 026025 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH--------------------------------------------- 194 (244)
Q Consensus 160 ~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~--------------------------------------------- 194 (244)
||+.+|||+++|++.+|++|+||++++|.++++..
T Consensus 251 rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T PLN02710 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKV 330 (439)
T ss_pred hcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998531
Q ss_pred --------------CCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025 195 --------------HVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR 240 (244)
Q Consensus 195 --------------~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~ 240 (244)
.+|.+++.+||+.|| .++|||+.+|+|.+|.++|++.|.-|+.++.
T Consensus 331 ~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~ 391 (439)
T PLN02710 331 GFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQY 391 (439)
T ss_pred ccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Confidence 145678999999985 8899999999999999999977777766654
No 17
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-42 Score=281.11 Aligned_cols=238 Identities=21% Similarity=0.316 Sum_probs=227.2
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCch
Q 026025 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (244)
Q Consensus 2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~ 81 (244)
+|+.+|+.+.|+++||+++|+|....+.++.+-.|..|+++|++....+-.++++++.||...|++||.|.+....+-+.
T Consensus 64 e~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDT 143 (329)
T KOG0366|consen 64 ERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDT 143 (329)
T ss_pred chhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccch
Confidence 57889999999999999999999888888999999999999999997666689999999999999999999988889999
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcC
Q 026025 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (244)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q 161 (244)
..+|+|+..|++|+.++.++++++++|+.+|.|-||||+..|+.|+|..-+||.+++|+++|.++.++.|....||...|
T Consensus 144 Rfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ 223 (329)
T KOG0366|consen 144 RFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQ 223 (329)
T ss_pred hhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 162 ~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
.+.||...+|.+-||++|++|++++|+++++++.++.+++.+||++|| .++|||+.||+..+|+.++++.++-|+++.
T Consensus 224 ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg 302 (329)
T KOG0366|consen 224 LPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLG 302 (329)
T ss_pred CCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhC
Confidence 999999999999999999999999999999999999999999999999 699999999999999999998888777764
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=277.45 Aligned_cols=239 Identities=19% Similarity=0.344 Sum_probs=222.2
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (244)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (244)
.++|+.+-|+.+++.++|+|+....+++++..||+|+++|.+++.. ...+++.+.+||..+|+|||+|-...-.+.+
T Consensus 75 ~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevD 154 (342)
T COG5029 75 VDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVD 154 (342)
T ss_pred hhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcch
Confidence 4578889999999999999998888899999999999999999743 3457788999999999999999888778889
Q ss_pred hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhh-HHHHHHHHHh
Q 026025 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN-VDKAVEYIVS 159 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~-~e~~~~~i~~ 159 (244)
....|+|+.++.+++.++..+.+.+++||++||+.||||+..|+.|+|..+|||++++|++++.++..+ +|++++||..
T Consensus 155 tr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~ 234 (342)
T COG5029 155 TRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAE 234 (342)
T ss_pred HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 999999999999999988888999999999999999999999999999999999999999999988877 7999999999
Q ss_pred cCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhh
Q 026025 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 160 ~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~ 238 (244)
.|.+.|||.+++++.+|++|.||++++|+++++.+.++.+++.+||+.|| ...|||+.+|++.+|.+++-..|+.|..+
T Consensus 235 RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~ 314 (342)
T COG5029 235 RQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLI 314 (342)
T ss_pred cccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999997 56999999999999999999999988877
Q ss_pred hhcc
Q 026025 239 CRSS 242 (244)
Q Consensus 239 ~~~~ 242 (244)
.-|.
T Consensus 315 ~~k~ 318 (342)
T COG5029 315 EYKY 318 (342)
T ss_pred ccCC
Confidence 6553
No 19
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=246.21 Aligned_cols=239 Identities=21% Similarity=0.339 Sum_probs=211.2
Q ss_pred cccHHHHHHHHHHcccCC---CC-----ccc----------cccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHh
Q 026025 3 ELAADKHVKYIISVEKKK---DS-----FES----------VVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILK 63 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~d---g~-----~~~----------~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~ 63 (244)
+++++.+++|+.+.|-.+ .. |.. ...+.+.+.+||+++.+|.+||.. ...+++.+++++..
T Consensus 57 ~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~ 136 (347)
T KOG0367|consen 57 SVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSA 136 (347)
T ss_pred ccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHH
Confidence 567899999999987532 22 211 022457889999999999999985 45789999999999
Q ss_pred cccCCCCcCCC-CCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhh
Q 026025 64 CQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142 (244)
Q Consensus 64 ~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l 142 (244)
||++||.|... .|.+++....|+|+.+..+|+..+.+|.++++.||+++|+.||||+..|++|+|..+||||+++|+++
T Consensus 137 ~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~ 216 (347)
T KOG0367|consen 137 CQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALM 216 (347)
T ss_pred hcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHH
Confidence 99999999766 47889999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccC------ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccc
Q 026025 143 QRL------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGL 215 (244)
Q Consensus 143 ~~~------~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf 215 (244)
+.+ +..++|+.++|+...|..+|||.++++++.|.+|.||..++|.+|+....++.+++.+||.++| .--|||
T Consensus 217 ~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGF 296 (347)
T KOG0367|consen 217 GKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGF 296 (347)
T ss_pred hhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcc
Confidence 976 2346899999999999999999999999999999999999999999988899999999999999 556999
Q ss_pred cCCCCCCCCccccchhhHhhhhhhhc
Q 026025 216 NGRPEKLPDVGIFSQPNLMMEHSCRS 241 (244)
Q Consensus 216 ~~~~~~~~d~~ys~~~l~~l~~~~~~ 241 (244)
.+.|+..||.++||..+.+|.+.-.|
T Consensus 297 sK~P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 297 SKWPEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred cCCCccCchHHHHHHHHHHHHHhcCC
Confidence 99999999999999888887766544
No 20
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=238.12 Aligned_cols=231 Identities=20% Similarity=0.310 Sum_probs=208.8
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (244)
.++++.||..+|.|.|+|+.-+++.+.+..||-|+.+|-++|.+. .++++++.+||.++.++||||-...+.+.++.
T Consensus 122 ~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvR 201 (423)
T KOG0365|consen 122 KENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVR 201 (423)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHH
Confidence 568999999999999999998889999999999999999999863 57899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (244)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~ 162 (244)
+.|||+.+-.+++-...---+...+||.+||+.+|||++.|+.|.|..||||++|+|.+|+..+..+.+++.+|..+.|.
T Consensus 202 s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm 281 (423)
T KOG0365|consen 202 SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQM 281 (423)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhh
Confidence 99999999888876543235788999999999999999999999999999999999999999888999999999999997
Q ss_pred -CCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-----C-----CCCHHHHHHHHHcc-cccCccccCCCCCCCCccccch
Q 026025 163 -LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-----H-----HVDKDLLGWWLCER-QVKSGGLNGRPEKLPDVGIFSQ 230 (244)
Q Consensus 163 -~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-----~-----~~~~~~~~~wL~~~-Q~~~GGf~~~~~~~~d~~ys~~ 230 (244)
.+|||.++.++-.|++|+||.-++..++... + ..+.+++.+||+.| |.+.|||..-|+|+.|.|++.+
T Consensus 282 ~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCY 361 (423)
T KOG0365|consen 282 RFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCY 361 (423)
T ss_pred hhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhh
Confidence 7899999999999999999998888887642 1 36789999999886 9999999999999999988886
Q ss_pred hhHhhh
Q 026025 231 PNLMME 236 (244)
Q Consensus 231 ~l~~l~ 236 (244)
.|.=|+
T Consensus 362 cLsGLS 367 (423)
T KOG0365|consen 362 CLSGLS 367 (423)
T ss_pred Hhcchh
Confidence 665554
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.98 E-value=6.2e-31 Score=224.58 Aligned_cols=233 Identities=27% Similarity=0.324 Sum_probs=204.2
Q ss_pred ccHHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCC--
Q 026025 4 LAADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH-- 77 (244)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~-- 77 (244)
-.++++++||.+.|++||+|.++... .++++.|++++.+|..++.. .....+++++||.++|++||||......
T Consensus 52 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~ 131 (300)
T cd00688 52 ENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNH 131 (300)
T ss_pred HHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCC
Confidence 35789999999999999999988765 78999999999999999863 2346889999999999999999877554
Q ss_pred -----CCchhhHHHHHHHHHHhcCCC-ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHH
Q 026025 78 -----DPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151 (244)
Q Consensus 78 -----~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e 151 (244)
.+++..|++++.+|..++... ..+++++++||.++|++|||| .+..++|+..|++++.+|..++.......+
T Consensus 132 ~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~ 209 (300)
T cd00688 132 RIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAK 209 (300)
T ss_pred cccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHH
Confidence 678899999999999887643 346899999999999999999 566778999999999999999875456789
Q ss_pred HHHHHHHhcCCCCCCCCCCC---CCCcchhHHHHHHHHHHHhCCC-CCCCHHHHHHHHHcccccCccccCCCCCCCCccc
Q 026025 152 KAVEYIVSCKNLDGGFGCTP---GGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGI 227 (244)
Q Consensus 152 ~~~~~i~~~Q~~dGGf~~~p---~~~~~~~~T~~al~aL~~l~~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~y 227 (244)
++++||+++|..+|||...+ ..+++..+|++++.+|..++.. +....+++++||+.+|..+|||...|++.+|+++
T Consensus 210 ~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~ 289 (300)
T cd00688 210 KALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQH 289 (300)
T ss_pred HHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchh
Confidence 99999999999999999875 6789999999999999988764 4567899999999999999999999999999999
Q ss_pred cchhhHhhhhh
Q 026025 228 FSQPNLMMEHS 238 (244)
Q Consensus 228 s~~~l~~l~~~ 238 (244)
++|+|.+|.++
T Consensus 290 t~~al~aL~~~ 300 (300)
T cd00688 290 TVFALLALSLY 300 (300)
T ss_pred hHHHHHHHhcC
Confidence 99999999764
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.96 E-value=3.7e-28 Score=207.43 Aligned_cols=229 Identities=32% Similarity=0.479 Sum_probs=194.4
Q ss_pred HHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC------CCcCHHHHHHHHHhcccCCCCcCCCCCC-CC
Q 026025 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL------DAVDEEDVISWILKCQDESGGFAGNIGH-DP 79 (244)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~------~~~~~~~~i~~l~~~q~~dGgf~~~~~~-~~ 79 (244)
+++++||++.+.++|+|.... ....+..+++++.++..++.. ....++++++||.++|++||||+..++. .+
T Consensus 2 ~~~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~ 80 (300)
T cd00688 2 EKHLKYLLRYPYGDGHWYQSL-CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP 80 (300)
T ss_pred hhHHHHHHHccccCCCccccC-CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCc
Confidence 689999999999999874322 346788899999999988752 2346889999999999999999998877 89
Q ss_pred chhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCCCCC-------CCChhhHHHHHHHHHhhccCC-hh
Q 026025 80 HVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWG-------EVDTRFSYIAICCLSILQRLD-KI 148 (244)
Q Consensus 80 ~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~~~~-------~~d~~~ty~al~~l~~l~~~~-~~ 148 (244)
++..|+.++.+|..++.. ....++++++||.++|++||+|...... ..++..|++++.+|..++... ..
T Consensus 81 ~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~ 160 (300)
T cd00688 81 SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP 160 (300)
T ss_pred chHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcH
Confidence 999999999999988753 3345789999999999999999865432 578889999999999988743 45
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCC---CCCCCc
Q 026025 149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP---EKLPDV 225 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~---~~~~d~ 225 (244)
.++++++||.++|++|||| .++.+++...|++++.+|..++.......+++++||+++|..+|||...+ .+.+|.
T Consensus 161 ~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~ 238 (300)
T cd00688 161 LIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDS 238 (300)
T ss_pred HHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCch
Confidence 7899999999999999999 67788999999999999999986545668999999999999999998875 889999
Q ss_pred cccchhhHhhhhh
Q 026025 226 GIFSQPNLMMEHS 238 (244)
Q Consensus 226 ~ys~~~l~~l~~~ 238 (244)
|+++|.+..|...
T Consensus 239 ~~~~~~~~aL~~~ 251 (300)
T cd00688 239 CYTEWAAYALLAL 251 (300)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777554
No 23
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.95 E-value=4.8e-27 Score=221.10 Aligned_cols=232 Identities=21% Similarity=0.214 Sum_probs=175.6
Q ss_pred HHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhC---CC-----CCcCHHHHHHHH
Q 026025 6 ADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILG---KL-----DAVDEEDVISWI 61 (244)
Q Consensus 6 ~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~llg---~~-----~~~~~~~~i~~l 61 (244)
.+|+.+||++.|. ++|+|.+... ..++...|.-++.+|..+. .. +....+++++||
T Consensus 330 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~L 409 (634)
T TIGR03463 330 LERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFI 409 (634)
T ss_pred HHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHH
Confidence 4689999999984 5788876532 2334444666777665533 21 113567899999
Q ss_pred HhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCCCc--------cCHHHHHHHHHhc
Q 026025 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDI--------LDADKVSNYIVGL 112 (244)
Q Consensus 62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~--------~~~~~~~~~l~~~ 112 (244)
+++||+||||+.+.. ..+++..|..+|.+|..+..... ..++++++||++.
T Consensus 410 l~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 410 LSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred HHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 999999999995532 34688899999999988754221 1268899999999
Q ss_pred cCCCCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCC----------CCCCcchhHHH
Q 026025 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIF 181 (244)
Q Consensus 113 q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~~~T~ 181 (244)
|++||||.+..+ ......|++++.+|...|.. ....++++++||+++|++||||+.. ++.++++..|+
T Consensus 490 Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA 568 (634)
T TIGR03463 490 QREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTS 568 (634)
T ss_pred cCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHH
Confidence 999999987654 34455688899999888863 4567899999999999999999753 34578999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCC--CCCCCccc----cc---hhhHhhhhh
Q 026025 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGI----FS---QPNLMMEHS 238 (244)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~~~~d~~y----s~---~~l~~l~~~ 238 (244)
|||.+|...+..+...++++++||+++|.++|||...+ +.++-.|| .| |||.+|++|
T Consensus 569 ~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~Y~~~fpl~ALg~y 634 (634)
T TIGR03463 569 WALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDLYLRYFPTWALAVC 634 (634)
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCccchHhHHHHhhcC
Confidence 99999999987666678999999999999999996643 33333333 22 999999875
No 24
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.95 E-value=3e-26 Score=215.54 Aligned_cols=234 Identities=18% Similarity=0.146 Sum_probs=174.6
Q ss_pred HHHHHHHHHHccc-------------CCCCccccccc--cchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccc
Q 026025 6 ADKHVKYIISVEK-------------KKDSFESVVME--HLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD 66 (244)
Q Consensus 6 ~~~~~~yl~~~q~-------------~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~----~~~~~~~i~~l~~~q~ 66 (244)
..++.+||++.|. ++|+|.+.... .+++..|..++.+|..++... ....+++++||+++|+
T Consensus 338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn 417 (635)
T TIGR01507 338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS 417 (635)
T ss_pred HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence 5689999999863 36777765322 578888999999998875321 2367899999999999
Q ss_pred CCCCcCCCCC-------------------CCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHHhccCCCCCccCCCCCC
Q 026025 67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE 126 (244)
Q Consensus 67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~q~~dGgf~~~~~~~ 126 (244)
+||||+.+.. ..|.+..|..++.+|...+.. +...++++++||.+.|++||||.++++ .
T Consensus 418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~ 496 (635)
T TIGR01507 418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-V 496 (635)
T ss_pred CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-C
Confidence 9999976531 135667899999999877532 222478999999999999999976654 2
Q ss_pred CChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCC----------CCCCcchhHHHHHHHHHHHhCCCCC
Q 026025 127 VDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCVGALAIAGALHH 195 (244)
Q Consensus 127 ~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~~~T~~al~aL~~l~~~~~ 195 (244)
.++..|..++.+|...|.. ....++++++||+++|++||||++. +.+++++..|.+||.+|...+..+.
T Consensus 497 ~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~ 576 (635)
T TIGR01507 497 NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAES 576 (635)
T ss_pred ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence 2333344455555555542 3456899999999999999999864 2247899999999999999987666
Q ss_pred CCHHHHHHHHHcccccCccccCC-------CCCCCCccccc---hhhHhhhhhhh
Q 026025 196 VDKDLLGWWLCERQVKSGGLNGR-------PEKLPDVGIFS---QPNLMMEHSCR 240 (244)
Q Consensus 196 ~~~~~~~~wL~~~Q~~~GGf~~~-------~~~~~d~~ys~---~~l~~l~~~~~ 240 (244)
..++++++||.++|+++|||.-. |....=.|+.| |||.+|+.|++
T Consensus 577 ~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y~~~fpl~ALg~y~~ 631 (635)
T TIGR01507 577 EAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMYRHVFPLLALARYKQ 631 (635)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccchhhHhHHHHHHHHHH
Confidence 67999999999999999999653 22211112222 99999999976
No 25
>PLN02993 lupeol synthase
Probab=99.94 E-value=1.2e-25 Score=212.13 Aligned_cols=235 Identities=17% Similarity=0.190 Sum_probs=171.2
Q ss_pred HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHHHHHhhCCCC---------CcCHHHHHH
Q 026025 6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLTTLDILGKLD---------AVDEEDVIS 59 (244)
Q Consensus 6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~~l~llg~~~---------~~~~~~~i~ 59 (244)
..|+.+||++.|.. +|+|.+... ..++...|.=++.++-+|...+ .+...++++
T Consensus 441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~ 520 (763)
T PLN02993 441 LRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVN 520 (763)
T ss_pred HHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHH
Confidence 46888999987762 366665432 2334444555555433332211 134678999
Q ss_pred HHHhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCC-C-----c--cCHHHHHHHHH
Q 026025 60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D-----I--LDADKVSNYIV 110 (244)
Q Consensus 60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~-----~--~~~~~~~~~l~ 110 (244)
||+++||+||||+.+.. ..+.+..|..+|.+|.+++.. . . ..++++++||.
T Consensus 521 wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~ 600 (763)
T PLN02993 521 LLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIE 600 (763)
T ss_pred HHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHH
Confidence 99999999999998752 157788999999999988642 1 1 13688999999
Q ss_pred hccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCC--hhhHHHHHHHHHhcCCCCCCCCCCC------------CCCcc
Q 026025 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP------------GGESH 176 (244)
Q Consensus 111 ~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dGGf~~~p------------~~~~~ 176 (244)
+.|++||||.++++ ...+..|++++.+|...|... ...++|+++||+++|++||||++.. ++.|+
T Consensus 601 ~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St 679 (763)
T PLN02993 601 SKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSN 679 (763)
T ss_pred HhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCc
Confidence 99999999998754 234445667888887777642 2578999999999999999998752 24589
Q ss_pred hhHHHHHHHHHHHhCCCCC--CCHHHHHHHHHcccccCccccCC--CCCCCCccc----cc---hhhHhhhhhhhc
Q 026025 177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVGI----FS---QPNLMMEHSCRS 241 (244)
Q Consensus 177 ~~~T~~al~aL~~l~~~~~--~~~~~~~~wL~~~Q~~~GGf~~~--~~~~~d~~y----s~---~~l~~l~~~~~~ 241 (244)
+..|.||+.+|...+..+. ..++++++||.++|.++|+|--. .+.++-.|| +| +||.+|+.|++-
T Consensus 680 ~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~ 755 (763)
T PLN02993 680 LVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKA 755 (763)
T ss_pred hhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccceeccCccchHHHHHHHHHHHHh
Confidence 9999999999999986433 35889999999999999987432 233444443 22 999999999863
No 26
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.93 E-value=5.3e-25 Score=208.35 Aligned_cols=232 Identities=22% Similarity=0.246 Sum_probs=172.1
Q ss_pred HHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHHH
Q 026025 6 ADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWIL 62 (244)
Q Consensus 6 ~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~llg~~~-------~~~~~~~i~~l~ 62 (244)
.+++++||++.|. ++|+|.+... ..+++..|..++.+|..++..+ ....+++++||+
T Consensus 331 l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl 410 (634)
T cd02892 331 LKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLL 410 (634)
T ss_pred HHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHH
Confidence 5789999999985 4667765421 2345556888888888887542 134678999999
Q ss_pred hcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCCCcc-------CHHHHHHHHHhccC
Q 026025 63 KCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQN 114 (244)
Q Consensus 63 ~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~q~ 114 (244)
++|++||||+.+.. ..+++..|.+++.+|..++..... .++++++||.+.|+
T Consensus 411 ~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~ 490 (634)
T cd02892 411 GMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQE 490 (634)
T ss_pred hccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccC
Confidence 99999999985321 136778899999999988654321 36889999999999
Q ss_pred CCCCccCCCCCCCChhhHHHHHHHHHhhccC--ChhhHHHHHHHHHhcCCCCCCCCCCC----------CCCcchhHHHH
Q 026025 115 EDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFC 182 (244)
Q Consensus 115 ~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~e~~~~~i~~~Q~~dGGf~~~p----------~~~~~~~~T~~ 182 (244)
+||||.++.+ ...+..|+.++.+|...|.. ....++++++||+++|++||||+..+ +.++++..|.+
T Consensus 491 ~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~ 569 (634)
T cd02892 491 PDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAW 569 (634)
T ss_pred CCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHH
Confidence 9999977653 23334455677777777753 24578999999999999999998642 35688999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCC--C-CCCccccc------hhhHhhhhh
Q 026025 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPE--K-LPDVGIFS------QPNLMMEHS 238 (244)
Q Consensus 183 al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~--~-~~d~~ys~------~~l~~l~~~ 238 (244)
|+.+|...+..+...++++++||.++|.++|||.-..- . .+..++.| |||.+|++|
T Consensus 570 AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~~Y~~~fpl~ALg~y 634 (634)
T cd02892 570 ALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYHNYRNYFPLWALGRY 634 (634)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccCchhhHhHHHHhhcC
Confidence 99999988876556789999999999999999955220 0 11122222 999999875
No 27
>PLN03012 Camelliol C synthase
Probab=99.93 E-value=4.3e-25 Score=208.13 Aligned_cols=235 Identities=17% Similarity=0.177 Sum_probs=167.0
Q ss_pred HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHHH---HHhhCCC---C---CcCHHHHHH
Q 026025 6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLTT---LDILGKL---D---AVDEEDVIS 59 (244)
Q Consensus 6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~~---l~llg~~---~---~~~~~~~i~ 59 (244)
..|+.+||++.|.. .|+|.+... ..++...|.=++.+ +.++... . .....++++
T Consensus 441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~ 520 (759)
T PLN03012 441 LRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVN 520 (759)
T ss_pred HHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 46888999988762 255554322 12333345555544 3433321 1 134678999
Q ss_pred HHHhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCCC------cc--CHHHHHHHHH
Q 026025 60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVSNYIV 110 (244)
Q Consensus 60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~~~l~ 110 (244)
||+++||+||||+.+.. ..+...+|..+|.+|.++.... .+ .++++++||+
T Consensus 521 wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~ 600 (759)
T PLN03012 521 ILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIE 600 (759)
T ss_pred HHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHH
Confidence 99999999999987643 2466678999999998876421 12 3688999999
Q ss_pred hccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC--ChhhHHHHHHHHHhcCCCCCCCCCCC------------CCCcc
Q 026025 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP------------GGESH 176 (244)
Q Consensus 111 ~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~e~~~~~i~~~Q~~dGGf~~~p------------~~~~~ 176 (244)
+.|++||||.++++-. .+-.|.+|+.+|...|.. +...++|+++||++.|++||||++.- +..|+
T Consensus 601 ~~Q~~DGsW~G~Wgv~-y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~ 679 (759)
T PLN03012 601 NIQMLDGSWYGNWGIC-FTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISN 679 (759)
T ss_pred HhcCCCCCCccccccc-CCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCc
Confidence 9999999999887531 112344567777777763 23578999999999999999999864 23589
Q ss_pred hhHHHHHHHHHHHhCCCCC--CCHHHHHHHHHcccccCccccCC--CCCCCCccc----cc---hhhHhhhhhhhc
Q 026025 177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVGI----FS---QPNLMMEHSCRS 241 (244)
Q Consensus 177 ~~~T~~al~aL~~l~~~~~--~~~~~~~~wL~~~Q~~~GGf~~~--~~~~~d~~y----s~---~~l~~l~~~~~~ 241 (244)
+..|+||+.+|...++.+. ..++|+++||+++|.++|+|--. .+.++-.|| +| +||.+|++|++-
T Consensus 680 ~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~ 755 (759)
T PLN03012 680 LVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRAR 755 (759)
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHh
Confidence 9999999999999987433 35899999999999999998432 222333332 22 999999999864
No 28
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.92 E-value=2.2e-24 Score=202.84 Aligned_cols=234 Identities=21% Similarity=0.168 Sum_probs=168.5
Q ss_pred HHHHHHHHHHcccCC---------------CCcccccc--ccchHHHHHHHHHHHHhhCCC-C---CcCHHHHHHHHHhc
Q 026025 6 ADKHVKYIISVEKKK---------------DSFESVVM--EHLRLNGAYWGLTTLDILGKL-D---AVDEEDVISWILKC 64 (244)
Q Consensus 6 ~~~~~~yl~~~q~~d---------------g~~~~~~~--~~~~~~~~y~al~~l~llg~~-~---~~~~~~~i~~l~~~ 64 (244)
..++.+||++.|..+ |+|.+... ..+++..|--++.++.++... . ....+++++||.++
T Consensus 321 i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~ 400 (621)
T TIGR01787 321 LVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGM 400 (621)
T ss_pred HHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHH
Confidence 578999999998855 66654332 124666666666555554431 1 23467899999999
Q ss_pred ccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCC-C--ccCHHHHHHHHHhccCCCCCcc
Q 026025 65 QDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D--ILDADKVSNYIVGLQNEDGSFS 120 (244)
Q Consensus 65 q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~--~~~~~~~~~~l~~~q~~dGgf~ 120 (244)
|++||||+.+.. ..+.+..|..+|.+|...+.. + ...++++++||.+.|++||+|.
T Consensus 401 Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~ 480 (621)
T TIGR01787 401 QSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWF 480 (621)
T ss_pred cCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence 999999985431 123446899999999877531 1 1237899999999999999998
Q ss_pred CCCCCCCChhhHHHHHHHHHhhccCC--hhhHHHHHHHHHhcCCCCCCCCCCC----------CCCcchhHHHHHHHHHH
Q 026025 121 GDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALA 188 (244)
Q Consensus 121 ~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dGGf~~~p----------~~~~~~~~T~~al~aL~ 188 (244)
++.+. ..+..|..++.+|..+|... ...++++++||+++|++||||+... ..+|++..|.|||.+|.
T Consensus 481 g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 481 GRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI 559 (621)
T ss_pred ccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 76542 22223445666677777532 2568999999999999999998643 24689999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHcccccCccccCCC--CC-CCCccc----cc---hhhHhhhhhhh
Q 026025 189 IAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EK-LPDVGI----FS---QPNLMMEHSCR 240 (244)
Q Consensus 189 ~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~~-~~d~~y----s~---~~l~~l~~~~~ 240 (244)
..+..+...++++++||.++|.++|||...+ +. .|-.|| .| |||.+|+.|++
T Consensus 560 ~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~Y~~~fpl~ALg~y~~ 621 (621)
T TIGR01787 560 AAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKYTNYRNIFPLWALGRYRQ 621 (621)
T ss_pred HcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecccccchhhHHHHHHHHhC
Confidence 8886555578999999999999999996533 21 223343 22 99999999864
No 29
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.92 E-value=1.5e-23 Score=185.32 Aligned_cols=212 Identities=24% Similarity=0.259 Sum_probs=159.5
Q ss_pred cHHHHHHHHHHcc--------------cCCCCccccccc--cchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHH
Q 026025 5 AADKHVKYIISVE--------------KKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI 61 (244)
Q Consensus 5 ~~~~~~~yl~~~q--------------~~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~-------~~~~~~~i~~l 61 (244)
..+|+++||.+.| .++|+|.+.... .++...|-+++.+|..++... ....+++++||
T Consensus 47 ~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L 126 (348)
T cd02889 47 ALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWL 126 (348)
T ss_pred HHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence 3579999999999 688988764322 233335777777777666432 23577899999
Q ss_pred HhcccCCCCcCCCCC-------------------CCCchhhHHHHHHHHHHhcCCCc-------cCHHHHHHHHHhccCC
Q 026025 62 LKCQDESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVDI-------LDADKVSNYIVGLQNE 115 (244)
Q Consensus 62 ~~~q~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~~-------~~~~~~~~~l~~~q~~ 115 (244)
.++|++||||..... ..+++..|.+++.+|..++.... ..++++++||.+.|++
T Consensus 127 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~ 206 (348)
T cd02889 127 LSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP 206 (348)
T ss_pred HHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999985422 23567889999999988765322 1367899999999999
Q ss_pred CCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCC----------CCCCcchhHHHHHH
Q 026025 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCV 184 (244)
Q Consensus 116 dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~~~T~~al 184 (244)
||+|.+... ..+...|+.++.+|...|.. ....++++++||+++|++||||+.. ++..+++..|.++|
T Consensus 207 dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al 285 (348)
T cd02889 207 DGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWAL 285 (348)
T ss_pred CCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHH
Confidence 999975432 23333455566667666652 3456789999999999999999863 24568889999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHcccccCccccC
Q 026025 185 GALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (244)
Q Consensus 185 ~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (244)
.+|...+..+...++++++||.++|+++|||..
T Consensus 286 ~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 286 LALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence 999888776556688999999999999999976
No 30
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.91 E-value=2.2e-23 Score=184.24 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=174.1
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcc--------------cCCC
Q 026025 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQ--------------DESG 69 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q--------------~~dG 69 (244)
+++.++||.+.|++||+|.... +++..|.+++.+|...+.. .....+++++||.+.| .++|
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G 77 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG 77 (348)
T ss_pred CchHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence 3688999999999999998654 7788899999999888863 3346889999999999 6889
Q ss_pred CcCCCCC--CCCchhhHHHHHHHHHHhcCCC-------ccCHHHHHHHHHhccCCCCCccCCCC----------------
Q 026025 70 GFAGNIG--HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIW---------------- 124 (244)
Q Consensus 70 gf~~~~~--~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~q~~dGgf~~~~~---------------- 124 (244)
||+.... ..++...|..++.+|..++... .-.++++++||.++|++||+|.....
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~ 157 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGD 157 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcC
Confidence 9875432 2355668888888887766542 12368899999999999999974211
Q ss_pred ---CCCChhhHHHHHHHHHhhccCCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-
Q 026025 125 ---GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL- 193 (244)
Q Consensus 125 ---~~~d~~~ty~al~~l~~l~~~~~-------~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~- 193 (244)
..+++..|..++.+|..++.... ..++++++||+++|++||||.... ...+.+.|++++.+|..++..
T Consensus 158 ~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~ 236 (348)
T cd02889 158 IMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDE 236 (348)
T ss_pred CccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCc
Confidence 12345557777887777775322 357899999999999999996433 235667788899999888763
Q ss_pred CCCCHHHHHHHHHcccccCccccCC----------CCCCCCccccchhhHhhhhh
Q 026025 194 HHVDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 194 ~~~~~~~~~~wL~~~Q~~~GGf~~~----------~~~~~d~~ys~~~l~~l~~~ 238 (244)
....++++++||+++|.++|||... +...+|++++.+++..|...
T Consensus 237 ~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~ 291 (348)
T cd02889 237 NSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAA 291 (348)
T ss_pred CcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhc
Confidence 2345789999999999999999763 23467888888888888654
No 31
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.89 E-value=2.7e-22 Score=160.23 Aligned_cols=223 Identities=14% Similarity=0.173 Sum_probs=166.5
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh-cccCCCCcCCC-------
Q 026025 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK-CQDESGGFAGN------- 74 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~-~q~~dGgf~~~------- 74 (244)
-++.++.++||.+.|++||+|++...-+..+..||+|+.++.+||.++| .++++++||.+ +|...+|+...
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~evP-r~EktiefL~d~~qt~~~~~a~~~~~l~~l 83 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEVP-RKEKTIEFLYDQMQTAGVGVAMAIEFLRIL 83 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcCc-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3678999999999999999999877655568999999999999999876 79999999988 45544443211
Q ss_pred ---------------------------------CCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccC
Q 026025 75 ---------------------------------IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG 121 (244)
Q Consensus 75 ---------------------------------~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~ 121 (244)
.++...+..||+++.+|.+.+.. ..+++..|+.+-|+++|++.+
T Consensus 84 g~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~ 160 (274)
T COG1689 84 GAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDA 160 (274)
T ss_pred cccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccc
Confidence 01223467899999999887631 246788899999998876654
Q ss_pred CCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCC-CcchhHHHHHHHHHHHhCCCCCCCHHH
Q 026025 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDL 200 (244)
Q Consensus 122 ~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~-~~~~~~T~~al~aL~~l~~~~~~~~~~ 200 (244)
---.-+.+..||.|+-+|...+ ..+.+..|-.+|-. +|||...|++ +|....||+|+.+|.+|+.. -.+++
T Consensus 161 YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe~~c~~-~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~ 232 (274)
T COG1689 161 YGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFELCCGD-WGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISD 232 (274)
T ss_pred cccCCcchHHHHHHHHhhcccc-----chHHHHhHHhcccc-CCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchH
Confidence 3223345677776655443332 45667777777764 7999999986 78899999999999999975 44789
Q ss_pred HHHHHHcccccCccccCCC-CCCCCccccchhhHhhhh
Q 026025 201 LGWWLCERQVKSGGLNGRP-EKLPDVGIFSQPNLMMEH 237 (244)
Q Consensus 201 ~~~wL~~~Q~~~GGf~~~~-~~~~d~~ys~~~l~~l~~ 237 (244)
.++||.+.|+++|||+... .-....-++|.++..|.-
T Consensus 233 ~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 233 HIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLAS 270 (274)
T ss_pred HHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHH
Confidence 9999999999999998754 234444556655555543
No 32
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.87 E-value=5.2e-22 Score=147.72 Aligned_cols=109 Identities=34% Similarity=0.622 Sum_probs=91.2
Q ss_pred HHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHH--HHHHHhccCCCCCccCCC-CCCCChhhHHH
Q 026025 58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV--SNYIVGLQNEDGSFSGDI-WGEVDTRFSYI 134 (244)
Q Consensus 58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~--~~~l~~~q~~dGgf~~~~-~~~~d~~~ty~ 134 (244)
|+||+++|++||||+.. +..+++..|+.|+.+|..++... +++++ ++||.++|++||||...+ ..++|+..|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999988 78999999999999999887644 47888 999999999999999988 45678999999
Q ss_pred HHHHHHhhccCCh-hhHHHHHHHHHhcCCCCCCCCC
Q 026025 135 AICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGC 169 (244)
Q Consensus 135 al~~l~~l~~~~~-~~~e~~~~~i~~~Q~~dGGf~~ 169 (244)
+++++.+++.... ..++++++||+++|++||||++
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999987542 6789999999999999999974
No 33
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.85 E-value=4.3e-20 Score=174.17 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=161.4
Q ss_pred HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHhccc--------------
Q 026025 6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQD-------------- 66 (244)
Q Consensus 6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~---~~~~~~i~~l~~~q~-------------- 66 (244)
..+|+++|.+..- ++|+...... .+..+.|-+++.+|.-.|...+ ...+++.+||+++|.
T Consensus 278 ~~k~l~~l~~~~~~~~~~g~~~q~~-~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~ 356 (634)
T TIGR03463 278 VAAHLEGLEDYRYEDDDRGLRYNGY-NSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP 356 (634)
T ss_pred HHHHHHHHHhhEEEcCCCCEEEeeC-CCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence 5789999998764 4533322222 2445889999999976663221 246799999999994
Q ss_pred CCCCcCCCC--CCCCchhhHHHHHHHHHHhcCC--------CccCHHHHHHHHHhccCCCCCccCCCC------------
Q 026025 67 ESGGFAGNI--GHDPHVLYTLSAVQVLALFDKV--------DILDADKVSNYIVGLQNEDGSFSGDIW------------ 124 (244)
Q Consensus 67 ~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~--------~~~~~~~~~~~l~~~q~~dGgf~~~~~------------ 124 (244)
+.|||+... ...|+...|..+|.+|..+... +...++++++||.++|++||||+.-..
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~ 436 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP 436 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence 568887763 4567888999888887765421 111357899999999999999983210
Q ss_pred ---------CCCChhhHHHHHHHHHhhccCCh--------hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 026025 125 ---------GEVDTRFSYIAICCLSILQRLDK--------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL 187 (244)
Q Consensus 125 ---------~~~d~~~ty~al~~l~~l~~~~~--------~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL 187 (244)
..+.+-.|-.++.+|..++...+ ..++++++||++.|++||||...-+ ....+.|++++.+|
T Consensus 437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL 515 (634)
T TIGR03463 437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL 515 (634)
T ss_pred HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence 11122334445555555543221 2478999999999999999965433 45666899999999
Q ss_pred HHhCCC-CCCCHHHHHHHHHcccccCccccCCCC----------CCCCccccchhhHhhhhh
Q 026025 188 AIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 188 ~~l~~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~ 238 (244)
..++.. +...++++++||+++|++||||+.... ...+...|.|++.+|...
T Consensus 516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~ 577 (634)
T TIGR03463 516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEA 577 (634)
T ss_pred HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHc
Confidence 998863 345589999999999999999976432 245556677888888654
No 34
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.84 E-value=1.3e-19 Score=171.84 Aligned_cols=231 Identities=16% Similarity=0.130 Sum_probs=167.4
Q ss_pred HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccc--------------C
Q 026025 6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--------------E 67 (244)
Q Consensus 6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~--------------~ 67 (244)
..+|++++.+.. .+||.+... ...+.++.|-+++.+|.-.|.. .....+++++||.+.|. +
T Consensus 280 ~~~~l~~l~~~~~~~~~g~~~~~-~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~ 358 (634)
T cd02892 280 FKRHLERIDDFLWLGPEGMKMCQ-TNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR 358 (634)
T ss_pred HHHHHHHHHhcEEEecCCcEEEc-CCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence 468888888855 467765332 2356799999999999777753 23357899999999995 4
Q ss_pred CCCcCCC--CCCCCchhhHHHHHHHHHHhcCCC----cc---CHHHHHHHHHhccCCCCCccCC-CC-------------
Q 026025 68 SGGFAGN--IGHDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGD-IW------------- 124 (244)
Q Consensus 68 dGgf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~q~~dGgf~~~-~~------------- 124 (244)
.|||+.. +...|++..|..++.+|..++... .+ .++++++||.++|++||||... +.
T Consensus 359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e 438 (634)
T cd02892 359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE 438 (634)
T ss_pred CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence 5777643 234577889999999888776432 12 3678999999999999999731 11
Q ss_pred -------CCCChhhHHHHHHHHHhhccCCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHh
Q 026025 125 -------GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (244)
Q Consensus 125 -------~~~d~~~ty~al~~l~~l~~~~~-------~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l 190 (244)
..+.+..|..++.+|..++...+ ..++++++||+++|++||||.... +....+.|++++.+|..+
T Consensus 439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~ 517 (634)
T cd02892 439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAA 517 (634)
T ss_pred hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHh
Confidence 01234457888888888775432 357899999999999999996543 346677899999999998
Q ss_pred CCC--CCCCHHHHHHHHHcccccCccccCCCC----------CCCCccccchhhHhhhhh
Q 026025 191 GAL--HHVDKDLLGWWLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 191 ~~~--~~~~~~~~~~wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~ 238 (244)
+.. ....++++++||+++|+++|||+..+. ..+++..+.|++..|...
T Consensus 518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~ 577 (634)
T cd02892 518 GEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAA 577 (634)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHc
Confidence 863 234678999999999999999975322 234456666777777543
No 35
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.84 E-value=1e-20 Score=140.74 Aligned_cols=108 Identities=29% Similarity=0.450 Sum_probs=90.9
Q ss_pred HHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHH--HHHHHhcCCCCCCCCCCC-CCCcchhHHHH
Q 026025 106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA--VEYIVSCKNLDGGFGCTP-GGESHSGQIFC 182 (244)
Q Consensus 106 ~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~--~~~i~~~Q~~dGGf~~~p-~~~~~~~~T~~ 182 (244)
|+||.++|++||||... ..++++..|+.++.+|..++... +.+++ ++||+++|++||||...| +.+++..+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 67789999999999999998633 57888 999999999999999998 46789999999
Q ss_pred HHHHHHHhCCCCC-CCHHHHHHHHHcccccCcccc
Q 026025 183 CVGALAIAGALHH-VDKDLLGWWLCERQVKSGGLN 216 (244)
Q Consensus 183 al~aL~~l~~~~~-~~~~~~~~wL~~~Q~~~GGf~ 216 (244)
++++|.+++..+. ..++++++||+++|+++|||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999987554 678999999999999999996
No 36
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.83 E-value=4.8e-19 Score=166.99 Aligned_cols=232 Identities=17% Similarity=0.069 Sum_probs=164.5
Q ss_pred HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccc-------------CCCC
Q 026025 6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQD-------------ESGG 70 (244)
Q Consensus 6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~-------------~dGg 70 (244)
+.+|+++|++... .+|++..... .+.+|.|.+++.+|...|... ....+++.+||+++|- +.||
T Consensus 289 ~~~~l~~l~~~~~~~~~g~~~~~~-~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GG 367 (635)
T TIGR01507 289 IKLGWEGIDLYGVELDDSWMFQAC-VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGG 367 (635)
T ss_pred HHHHHHHHHHheEecCCceEecCC-CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCc
Confidence 5679999987544 4565543333 468999999999998888432 2357899999999973 3588
Q ss_pred cCCC--CCCCCchhhHHHHHHHHHHhcCCC----ccCHHHHHHHHHhccCCCCCccCCC------------CC-------
Q 026025 71 FAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDI------------WG------- 125 (244)
Q Consensus 71 f~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~q~~dGgf~~~~------------~~------- 125 (244)
|+.. +...|++..|..++.+|..++..+ ...++++++||.++|++||||..-. .+
T Consensus 368 W~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D 447 (635)
T TIGR01507 368 WAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTD 447 (635)
T ss_pred cCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccC
Confidence 7765 344689999999999998764211 1247889999999999999996411 00
Q ss_pred CCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-CCCCHHHHHH
Q 026025 126 EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGW 203 (244)
Q Consensus 126 ~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-~~~~~~~~~~ 203 (244)
.+++-.|-.++.+|...+.. ....++++++||++.|++||||-..- +..+.+.|..++.+|...+.. ....++++++
T Consensus 448 ~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~w-g~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~ 526 (635)
T TIGR01507 448 PPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRW-GVNYLYGTGAVLSALKAVGIDTREPYIQKALA 526 (635)
T ss_pred CCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCC-CCccccHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 12222344455555555432 24468899999999999999984332 345677888899999887652 2345889999
Q ss_pred HHHcccccCccccCCCC----------CCCCccccchhhHhhhhhh
Q 026025 204 WLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 204 wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~~ 239 (244)
||+++|++||||+.... ...|..-|.|++.+|-...
T Consensus 527 wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag 572 (635)
T TIGR01507 527 WLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAG 572 (635)
T ss_pred HHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhC
Confidence 99999999999974321 2345666779988886654
No 37
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.79 E-value=3.8e-18 Score=160.77 Aligned_cols=230 Identities=17% Similarity=0.109 Sum_probs=160.5
Q ss_pred HHHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCC---C-CCcCHHHHHHHHHhcccCC-----------
Q 026025 6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGK---L-DAVDEEDVISWILKCQDES----------- 68 (244)
Q Consensus 6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~---~-~~~~~~~~i~~l~~~q~~d----------- 68 (244)
..+|++.|++. ..+||.+. .. -.+.++.|-+++.+|.-.|. + .....+++++||.++|..+
T Consensus 269 ~~~~l~~l~~~~~~~~dg~~~-q~-~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~ 346 (621)
T TIGR01787 269 FQKHLQRIDDYLWLQLDGMKM-QG-TGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRH 346 (621)
T ss_pred HHHHHHHHhhcEEEeCCccEE-ec-CCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCC
Confidence 46888888876 45676542 11 15778999999999976663 2 1235789999999999866
Q ss_pred ----CCcCCC--CCCCCchhhHHHHHHHHHHhcC-CCc---cCHHHHHHHHHhccCCCCCccCCC-C-------------
Q 026025 69 ----GGFAGN--IGHDPHVLYTLSAVQVLALFDK-VDI---LDADKVSNYIVGLQNEDGSFSGDI-W------------- 124 (244)
Q Consensus 69 ----Ggf~~~--~~~~~~~~~T~~al~~L~~l~~-~~~---~~~~~~~~~l~~~q~~dGgf~~~~-~------------- 124 (244)
|||+.. ....|++..|..++.++.++.. .+. ..++++++||.+.|++||||.... .
T Consensus 347 ~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e 426 (621)
T TIGR01787 347 NLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSE 426 (621)
T ss_pred CCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchh
Confidence 666544 2345677777777766544432 112 235789999999999999997421 0
Q ss_pred -------CCCChhhHHHHHHHHHhhccCC---hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Q 026025 125 -------GEVDTRFSYIAICCLSILQRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (244)
Q Consensus 125 -------~~~d~~~ty~al~~l~~l~~~~---~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~ 194 (244)
..+....|..++.+|..++... ...++++++||+++|++||+|..+-+ ....+.|.+++.+|..++...
T Consensus 427 ~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~ 505 (621)
T TIGR01787 427 VFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTY 505 (621)
T ss_pred hhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcc
Confidence 0111234666777776665311 24689999999999999999975433 344566889999999988642
Q ss_pred C--CCHHHHHHHHHcccccCccccCCCC----------CCCCccccchhhHhhhhh
Q 026025 195 H--VDKDLLGWWLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 195 ~--~~~~~~~~wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~ 238 (244)
. ..++++++||+++|+++|||+.... ..+|+..+.|+|.+|-..
T Consensus 506 ~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~a 561 (621)
T TIGR01787 506 RNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAA 561 (621)
T ss_pred cCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 2 4478999999999999999975432 245677777888887654
No 38
>PLN02993 lupeol synthase
Probab=99.78 E-value=7.7e-18 Score=159.59 Aligned_cols=208 Identities=17% Similarity=0.115 Sum_probs=148.9
Q ss_pred cchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccC-----C----------CCcCCC--CCCCCchhhHHHHHHH
Q 026025 30 HLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE-----S----------GGFAGN--IGHDPHVLYTLSAVQV 90 (244)
Q Consensus 30 ~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~-----d----------Ggf~~~--~~~~~~~~~T~~al~~ 90 (244)
.+.+|.|.+++.+|.--|.. .....+++.+||++.|-. | |||+.. ....|+...|..++.+
T Consensus 415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 57899999999999877743 234688999999998862 2 777655 4467888999998876
Q ss_pred HHHhcCCC------cc---CHHHHHHHHHhccCCCCCccCCC------------------CCCCChhhHHH---HHHHHH
Q 026025 91 LALFDKVD------IL---DADKVSNYIVGLQNEDGSFSGDI------------------WGEVDTRFSYI---AICCLS 140 (244)
Q Consensus 91 L~~l~~~~------~~---~~~~~~~~l~~~q~~dGgf~~~~------------------~~~~d~~~ty~---al~~l~ 140 (244)
+.++.... .+ .+.++++||.+.|+.||||..-. +-..|..+++| ++.+|.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 54443221 12 25789999999999999987421 01123445555 444454
Q ss_pred hhccCC--------hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCC--CCHHHHHHHHHcccc
Q 026025 141 ILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQV 210 (244)
Q Consensus 141 ~l~~~~--------~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~--~~~~~~~~wL~~~Q~ 210 (244)
+++... ...++++++||++.|++||||..+ .+....+.|++||.+|..++.... ..++++++||+++|+
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~ 653 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR 653 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 444311 235789999999999999999764 345677789999999999887432 468999999999999
Q ss_pred cCccccCCCCC------------CCCccccchhhHhhhhh
Q 026025 211 KSGGLNGRPEK------------LPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 211 ~~GGf~~~~~~------------~~d~~ys~~~l~~l~~~ 238 (244)
+||||+..... .+.+.-+-|++..|...
T Consensus 654 ~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~a 693 (763)
T PLN02993 654 DDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHA 693 (763)
T ss_pred CCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHc
Confidence 99999874322 23335555888888665
No 39
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.77 E-value=1.2e-17 Score=144.74 Aligned_cols=197 Identities=15% Similarity=0.096 Sum_probs=143.5
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCC-------
Q 026025 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI------- 75 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~------- 75 (244)
+++.++.+.+.|++||+|..|...++.+|.|.+++.+|...... ++...+++++||.+.|++||+|....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 34556666778899999999987789999999999999877643 22357789999999999999998652
Q ss_pred --C---CCCchhhHHHHHHHHHHhcCCC-------ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhc
Q 026025 76 --G---HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (244)
Q Consensus 76 --~---~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~ 143 (244)
+ .++++..|.+++.+|...+... ...++++++||.+.+.+ ..++-.+.-+.-+|.+.|
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~ 203 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD 203 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence 1 1367788899998887765422 12468899999997753 011211222223344444
Q ss_pred cCChhhHHHHHHHHHhcCCCCCCCCCC---------CC--CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccC
Q 026025 144 RLDKINVDKAVEYIVSCKNLDGGFGCT---------PG--GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS 212 (244)
Q Consensus 144 ~~~~~~~e~~~~~i~~~Q~~dGGf~~~---------p~--~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~ 212 (244)
. ...+++.++|.++|+.|||++.. +. ...++..|.|||-++...+. .......++||.+.|+..
T Consensus 204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~~qr~~~ 278 (297)
T cd02896 204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD--IEYANPIARWLTEQRNYG 278 (297)
T ss_pred C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHHhcCCCC
Confidence 3 26688999999999999998752 11 23478899999988776663 446788999999999999
Q ss_pred ccccC
Q 026025 213 GGLNG 217 (244)
Q Consensus 213 GGf~~ 217 (244)
|||..
T Consensus 279 Ggf~s 283 (297)
T cd02896 279 GGFGS 283 (297)
T ss_pred CCeeh
Confidence 99964
No 40
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.76 E-value=6.8e-17 Score=139.83 Aligned_cols=213 Identities=12% Similarity=0.058 Sum_probs=144.9
Q ss_pred HHHHHHHHHH-------cccCCCCccccccc--cchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCC
Q 026025 6 ADKHVKYIIS-------VEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG 73 (244)
Q Consensus 6 ~~~~~~yl~~-------~q~~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~ 73 (244)
++++.+||.+ .|++||+|..|+.. ++.++.|.+++.+|....... ....+++++||.+.|++||||..
T Consensus 44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3566667764 79999999988654 788999999999998876422 23578899999999999999986
Q ss_pred CC---------CCCCchhhHHHHHHHHHHhcCCC-ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhc
Q 026025 74 NI---------GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (244)
Q Consensus 74 ~~---------~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~ 143 (244)
.. +..+.+..|..++.+|...+..+ ...++++++||.+.+.+ ..++-.+..+..+|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~ 193 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG 193 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence 42 12355678889999888776432 23468999999997764 112222333445555556
Q ss_pred cCChhhHHHHHHHHHh---cCCCCCCCCCC----------CC-CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc
Q 026025 144 RLDKINVDKAVEYIVS---CKNLDGGFGCT----------PG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ 209 (244)
Q Consensus 144 ~~~~~~~e~~~~~i~~---~Q~~dGGf~~~----------p~-~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q 209 (244)
.. ..+++++.+.+ .++.+|+|+.. +. ..+++..|.+++.+|...+..+.....+.++||.+.|
T Consensus 194 ~~---~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q 270 (292)
T cd02897 194 SE---KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR 270 (292)
T ss_pred Cc---cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence 21 23445554443 45566777642 12 2468889999998887776322345677889999999
Q ss_pred ccCccccCCCCCCCCccccchhhHhhhhh
Q 026025 210 VKSGGLNGRPEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 210 ~~~GGf~~~~~~~~d~~ys~~~l~~l~~~ 238 (244)
+.+|||..-- -+.++|.+|..|
T Consensus 271 ~~~Ggf~sTQ-------dt~~al~AL~~y 292 (292)
T cd02897 271 NSLGGFSSTQ-------DTVVALQALAKY 292 (292)
T ss_pred CCCCCcccHH-------HHHHHHHHHHcC
Confidence 9999996322 244667666543
No 41
>PLN03012 Camelliol C synthase
Probab=99.72 E-value=1.4e-16 Score=150.78 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=127.2
Q ss_pred cHHHHHHHHHHcccCCCCccccc---------------------cccchHHHHHHHHHHHHhhCCCC--------CcCHH
Q 026025 5 AADKHVKYIISVEKKKDSFESVV---------------------MEHLRLNGAYWGLTTLDILGKLD--------AVDEE 55 (244)
Q Consensus 5 ~~~~~~~yl~~~q~~dg~~~~~~---------------------~~~~~~~~~y~al~~l~llg~~~--------~~~~~ 55 (244)
...+++++|.++|++||||..+- .|++....|--+|.+|.+++... ....+
T Consensus 514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~ 593 (759)
T PLN03012 514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIK 593 (759)
T ss_pred HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHH
Confidence 35689999999999999984321 13444444777888888887532 12467
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC--CccCHHHHHHHHHhccCCCCCccCCCC---------
Q 026025 56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQNEDGSFSGDIW--------- 124 (244)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~q~~dGgf~~~~~--------- 124 (244)
++++||++.|++||||.+.-+. ..+..|.+||.+|...+.. +...++++++||++.|++||||+.+..
T Consensus 594 rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~ 672 (759)
T PLN03012 594 KAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA 672 (759)
T ss_pred HHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence 8999999999999999876542 4556899999999988753 223489999999999999999987532
Q ss_pred ---CCCChhhHHHHHHHHHhhccCC--hhhHHHHHHHHHhcCCCCCCCCCC
Q 026025 125 ---GEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCT 170 (244)
Q Consensus 125 ---~~~d~~~ty~al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dGGf~~~ 170 (244)
+.+.+.-|.||+.+|...|... +..++++++||.+.|.+||+|...
T Consensus 673 ~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~ 723 (759)
T PLN03012 673 QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQ 723 (759)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCc
Confidence 2366678899999988888643 346899999999999999999653
No 42
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.59 E-value=2.9e-14 Score=114.41 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=122.8
Q ss_pred cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHH
Q 026025 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI 109 (244)
Q Consensus 30 ~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l 109 (244)
++.+..|||+..+|.+.|... .+++-+||.+.|+++|++.+.-...|+...||.|+-.|... ..++.+..|=
T Consensus 120 ~~~Le~ty~~~~~l~~~n~~~---~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k-----~~~~~v~~Fe 191 (274)
T COG1689 120 ATPLEATYWMMSALNMVNYEY---LEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSK-----GPKEEVRHFE 191 (274)
T ss_pred CchHHHHHHHHHHHHHhCcCc---hHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccc-----cchHHHHhHH
Confidence 456788999999999998653 56788888899999988877766788999999888877533 3356666665
Q ss_pred HhccCCCCCccCCCCC-CCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCC-CCCcchhHHHHHHHHH
Q 026025 110 VGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTP-GGESHSGQIFCCVGAL 187 (244)
Q Consensus 110 ~~~q~~dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p-~~~~~~~~T~~al~aL 187 (244)
.+| -++|||...|++ ++-+..||.|+.++.+|+.. ..+.+.++||.+.||+||||+.+. .+.|...+||.|+++|
T Consensus 192 ~~c-~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L 268 (274)
T COG1689 192 LCC-GDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASL 268 (274)
T ss_pred hcc-ccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHH
Confidence 554 467999988876 56688999999999999863 456778999999999999998875 4679999999999999
Q ss_pred HHhC
Q 026025 188 AIAG 191 (244)
Q Consensus 188 ~~l~ 191 (244)
+.+.
T Consensus 269 ~~l~ 272 (274)
T COG1689 269 ASLH 272 (274)
T ss_pred HHHh
Confidence 8874
No 43
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.56 E-value=5.5e-14 Score=129.23 Aligned_cols=201 Identities=25% Similarity=0.275 Sum_probs=145.1
Q ss_pred HHHHHHHHHhhCCCC------CcCHH---HHHHHHHhcccCCCCcCCCCC---------------------CCCchhhHH
Q 026025 36 AYWGLTTLDILGKLD------AVDEE---DVISWILKCQDESGGFAGNIG---------------------HDPHVLYTL 85 (244)
Q Consensus 36 ~y~al~~l~llg~~~------~~~~~---~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~ 85 (244)
|.=++.++-+++..+ ..+.+ ..++.|+..|..+|||....- ..+.+.+|-
T Consensus 487 taEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~ 566 (760)
T KOG0497|consen 487 TAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTS 566 (760)
T ss_pred cHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHH
Confidence 333455555665432 23444 467788999999999976531 145678999
Q ss_pred HHHHHHHHhcCCC------cc--CHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHH---HHhhccC--ChhhHHH
Q 026025 86 SAVQVLALFDKVD------IL--DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICC---LSILQRL--DKINVDK 152 (244)
Q Consensus 86 ~al~~L~~l~~~~------~~--~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~---l~~l~~~--~~~~~e~ 152 (244)
++|++|......- .+ .+.+++.||.+.|.+||+|.++++ +|+||...-+ |...|.. +-..+++
T Consensus 567 s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irk 642 (760)
T KOG0497|consen 567 SAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRK 642 (760)
T ss_pred HHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHH
Confidence 9999998875421 11 257899999999999999999875 7888865443 3333432 2356899
Q ss_pred HHHHHHhcCCCCCCCCCCC------------CCCcchhHHHHHHHHHHHhCCCC--CCCHHHHHHHHHcccccCccccC-
Q 026025 153 AVEYIVSCKNLDGGFGCTP------------GGESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNG- 217 (244)
Q Consensus 153 ~~~~i~~~Q~~dGGf~~~p------------~~~~~~~~T~~al~aL~~l~~~~--~~~~~~~~~wL~~~Q~~~GGf~~- 217 (244)
+++|+++.|++||||+..+ +..+++-.|.+|+.+|.+.++.+ +....|+.+.|...|.++|-|.-
T Consensus 643 a~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq 722 (760)
T KOG0497|consen 643 ACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ 722 (760)
T ss_pred HHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence 9999999999999999885 23577889999999999998854 34789999999999999987743
Q ss_pred ----CCCCCCCccc-cc---hhhHhhhhhhh
Q 026025 218 ----RPEKLPDVGI-FS---QPNLMMEHSCR 240 (244)
Q Consensus 218 ----~~~~~~d~~y-s~---~~l~~l~~~~~ 240 (244)
..++.+=..| +| +++-+|++|.+
T Consensus 723 ~i~g~f~~~~~~~y~~yr~~F~~waL~~y~~ 753 (760)
T KOG0497|consen 723 EIEGVFNKNCMIHYPTYRNIFPIWALGEYRK 753 (760)
T ss_pred HHHHHhhhhhhhccchhhhhccHHHHHHHHH
Confidence 2233222212 22 88888888765
No 44
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.49 E-value=1e-12 Score=113.99 Aligned_cols=170 Identities=18% Similarity=0.095 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHhccCCCCCccCCC-------
Q 026025 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDI------- 123 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~------- 123 (244)
.++.++.++++|++||||+.+....+++..|.+++.+|........++ ++++++||.+.|++||+|....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 456777888999999999988777889999999999998776543333 6889999999999999998542
Q ss_pred -CC----CCChhhHHHHHHHHHhhccCC-------hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026025 124 -WG----EVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (244)
Q Consensus 124 -~~----~~d~~~ty~al~~l~~l~~~~-------~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~ 191 (244)
++ ++++..|-.++.+|...+... ...++++++||.+++.. ..+++.+..+.-+|.+.+
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~ 203 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD 203 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence 01 134444555555555544321 23678999999998853 234555655556677766
Q ss_pred CCCCCCHHHHHHHHHcccccCccccCCC-----------CCCCCccccchhhHhhh
Q 026025 192 ALHHVDKDLLGWWLCERQVKSGGLNGRP-----------EKLPDVGIFSQPNLMME 236 (244)
Q Consensus 192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~~~-----------~~~~d~~ys~~~l~~l~ 236 (244)
. ....++.+||.++|+.+||+..+. ....++.-+=|+|++|-
T Consensus 204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall 256 (297)
T cd02896 204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALL 256 (297)
T ss_pred C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHH
Confidence 4 267889999999999999876432 12235555556666654
No 45
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.45 E-value=1.5e-13 Score=84.83 Aligned_cols=44 Identities=45% Similarity=1.005 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026025 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (244)
Q Consensus 148 ~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~ 191 (244)
++++++++||++||++||||+..|+.++|+++|||++++|.+++
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999985
No 46
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.43 E-value=1.6e-11 Score=105.37 Aligned_cols=211 Identities=16% Similarity=0.113 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCC-----
Q 026025 6 ADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIG----- 76 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~----- 76 (244)
+++.++.|.+.|++||+|.+|.+. .++++.|.+++.+|...+.. ++...+++++||.+.|++||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 567889999999999999999876 78999999999999866532 223478999999999999999987543
Q ss_pred ----CCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHH
Q 026025 77 ----HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152 (244)
Q Consensus 77 ----~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~ 152 (244)
..+....|.+++.+|...+......+.++++||.+.... ..++-....+..+|.+.|. ....++
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~~ 198 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRADE 198 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHHH
Confidence 234556788888888776654334578899999986653 1122222333455556664 122344
Q ss_pred HHHHHHhcCCCCCCC-------CCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCc
Q 026025 153 AVEYIVSCKNLDGGF-------GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225 (244)
Q Consensus 153 ~~~~i~~~Q~~dGGf-------~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~ 225 (244)
+++-+...-...+.. ....+.......|.+++.+. +...+....++.++||.+.+...|+|.. +
T Consensus 199 ~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~s-------T 269 (282)
T cd02891 199 ALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLAL--LKLGDLEEAGPIAKWLAQQRNSGGGFLS-------T 269 (282)
T ss_pred HHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHH--HhcCChhhHHHHHHHHHHcCCCCCCccc-------H
Confidence 444444432222221 11122333444555554333 3322334568899999986666777642 2
Q ss_pred cccchhhHhhhh
Q 026025 226 GIFSQPNLMMEH 237 (244)
Q Consensus 226 ~ys~~~l~~l~~ 237 (244)
.-+.++|.+|..
T Consensus 270 q~t~~al~AL~~ 281 (282)
T cd02891 270 QDTVVALQALAA 281 (282)
T ss_pred HHHHHHHHHHHh
Confidence 345566666653
No 47
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.40 E-value=1.5e-13 Score=101.47 Aligned_cols=105 Identities=23% Similarity=0.349 Sum_probs=39.7
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHH
Q 026025 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180 (244)
Q Consensus 102 ~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T 180 (244)
++++++||.+.|++||||..... .+...|++++.+|..++.. ....++++++||+++|++||||+..+. .+...|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t 76 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred Ccccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence 36789999999999999987643 4667788888888777753 234679999999999999999998733 334456
Q ss_pred HHHHHHHHHhCCC-CCCCHHHHHHHHHcccc
Q 026025 181 FCCVGALAIAGAL-HHVDKDLLGWWLCERQV 210 (244)
Q Consensus 181 ~~al~aL~~l~~~-~~~~~~~~~~wL~~~Q~ 210 (244)
..++.+|.+.+.. +...++++++||.++|.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 77 AAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 6677777666543 22448899999999874
No 48
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.38 E-value=3.1e-11 Score=104.45 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHH-------HhcccCCCCcCCCCCC--CCchhhHHHHHHHHHHhcCCCcc---CHH
Q 026025 36 AYWGLTTLDILGKLDAVDEEDVISWI-------LKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDIL---DAD 103 (244)
Q Consensus 36 ~y~al~~l~llg~~~~~~~~~~i~~l-------~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~---~~~ 103 (244)
..+++.-|.-.+...+..++++++|| +++|++||||+.+... .+++.-|.+++.+|........+ .++
T Consensus 26 ~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ 105 (292)
T cd02897 26 NIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQ 105 (292)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHH
Confidence 33444444444433333345555555 4689999999887543 77889999999998876642222 368
Q ss_pred HHHHHHHhccCCCCCccCCC---------CCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCC
Q 026025 104 KVSNYIVGLQNEDGSFSGDI---------WGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGG 173 (244)
Q Consensus 104 ~~~~~l~~~q~~dGgf~~~~---------~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~ 173 (244)
++++||.+.|++||||.... ....++..|-.++.+|...|.. ....++++++||.+.+..
T Consensus 106 ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~---------- 175 (292)
T cd02897 106 QALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS---------- 175 (292)
T ss_pred HHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------
Confidence 89999999999999997421 0112233344555556556643 235679999999987753
Q ss_pred CcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc---ccCcccc
Q 026025 174 ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ---VKSGGLN 216 (244)
Q Consensus 174 ~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q---~~~GGf~ 216 (244)
..+++.+..+..+|.+++. ...++++++|...+ ...|+|.
T Consensus 176 ~~~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~ 218 (292)
T cd02897 176 ISDPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWS 218 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCC
Confidence 3466678778888888872 23456666665543 3345554
No 49
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.28 E-value=5.4e-12 Score=77.89 Aligned_cols=44 Identities=39% Similarity=0.704 Sum_probs=41.8
Q ss_pred cCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhc
Q 026025 100 LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (244)
Q Consensus 100 ~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~ 143 (244)
+|++++++||.++|++||||+++|+.++|+.+|||++++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999986
No 50
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.27 E-value=6.3e-12 Score=92.77 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=36.2
Q ss_pred HHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHH
Q 026025 55 EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133 (244)
Q Consensus 55 ~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty 133 (244)
+++++||++.|++||+|.... .++...|++++.+|..++.. ....++++++||.++|++||||...+. .+...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence 678999999999999997552 36688888888888877642 222479999999999999999997632 2233344
Q ss_pred HHHHHHHhhccC-ChhhHHHHHHHHHhcCC
Q 026025 134 IAICCLSILQRL-DKINVDKAVEYIVSCKN 162 (244)
Q Consensus 134 ~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~ 162 (244)
.+++++.+.+.. ....++++++||++.|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 455555444432 34568999999998864
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.22 E-value=1.8e-10 Score=97.38 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=130.5
Q ss_pred HHHHHHcccCCCCcccc-ccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHhcccCCCCcCCCCCC--------
Q 026025 10 VKYIISVEKKKDSFESV-VMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESGGFAGNIGH-------- 77 (244)
Q Consensus 10 ~~yl~~~q~~dg~~~~~-~~~~~~~~~~y~al~~l~llg~~~~---~~~~~~i~~l~~~q~~dGgf~~~~~~-------- 77 (244)
.+-+.+.+++||+|..+ ...++.+|.|.|++..|........ ...+++++||.+.|++||.|......
T Consensus 3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~ 82 (246)
T PF07678_consen 3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGG 82 (246)
T ss_dssp HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGG
T ss_pred hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCC
Confidence 44566778999999988 6678999999999999998876532 24678999999999999999765321
Q ss_pred -CCchhhHHHHHHHHHHhcCCC-------ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-HHHH--HHhhccCC
Q 026025 78 -DPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICC--LSILQRLD 146 (244)
Q Consensus 78 -~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~-al~~--l~~l~~~~ 146 (244)
...+..|.+.+.+|...++.. ...++++++||.+.... ....|. |+.+ |.+.+ +
T Consensus 83 ~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-------------~~~~Y~lAl~aYAL~la~--~ 147 (246)
T PF07678_consen 83 VEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN-------------IQDPYTLALVAYALALAG--D 147 (246)
T ss_dssp GTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-------------TSSHHHHHHHHHHHHHTT--T
T ss_pred CCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHHHhhc--c
Confidence 224556666666665444221 12368899999775211 122332 2222 23333 3
Q ss_pred hhhHHHHHHHHHhcCCCCCCCCCCCC--------------CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccC
Q 026025 147 KINVDKAVEYIVSCKNLDGGFGCTPG--------------GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS 212 (244)
Q Consensus 147 ~~~~e~~~~~i~~~Q~~dGGf~~~p~--------------~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~ 212 (244)
....+++.+-|.+....+|+..+-+. ...++..|.+|+-++... .+.......++||.+.|+..
T Consensus 148 ~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~ 225 (246)
T PF07678_consen 148 SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSG 225 (246)
T ss_dssp CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTT
T ss_pred cchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCC
Confidence 45667788888876655555422211 113567899998666555 23345678999999999999
Q ss_pred ccccCCCCCCCCccccchhhHhhhhh
Q 026025 213 GGLNGRPEKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 213 GGf~~~~~~~~d~~ys~~~l~~l~~~ 238 (244)
|||+.-- -+..+|.+|..|
T Consensus 226 Ggf~STQ-------dTvvaL~AL~~Y 244 (246)
T PF07678_consen 226 GGFGSTQ-------DTVVALQALAEY 244 (246)
T ss_dssp SSTSSHH-------HHHHHHHHHHHH
T ss_pred CccCcHH-------HHHHHHHHHHHH
Confidence 9996421 234556665554
No 52
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.15 E-value=1.2e-10 Score=106.02 Aligned_cols=217 Identities=18% Similarity=0.090 Sum_probs=140.2
Q ss_pred CCCCccccccc--cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCC-------------------C
Q 026025 19 KKDSFESVVME--HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG-------------------H 77 (244)
Q Consensus 19 ~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~-------------------~ 77 (244)
..|+|.++.+. .++...|-=++..+..... ..+.+.+++||..+|+..|||..++. .
T Consensus 248 ~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~--~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~ 325 (517)
T COG1657 248 SPGGWGFSNINTGYPDADDTAGVVRALIGVQS--LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD 325 (517)
T ss_pred CCCccceeecccCCCCchhhhHHHHHHHhhcc--hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence 56777766542 3333334334444433332 23677899999999999999988753 1
Q ss_pred CCchhhHHHHHHHHHHhcCCC----ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHh---hccCC--hh
Q 026025 78 DPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSI---LQRLD--KI 148 (244)
Q Consensus 78 ~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~---l~~~~--~~ 148 (244)
.+.+.+|-..+.+|..++.+. ...++++++||.+.|.++|.|.+.+. .+++|.....+.. +|... ..
T Consensus 326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~ 401 (517)
T COG1657 326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEV 401 (517)
T ss_pred CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchH
Confidence 233344444444554444332 34588999999999999999988764 5667765544444 44422 34
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCC----------CcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCC
Q 026025 149 NVDKAVEYIVSCKNLDGGFGCTPGG----------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR 218 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dGGf~~~p~~----------~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (244)
.+.+++.|+..+|++||||+..-.. .+-...|.||+..+....+.+...++..++.+.+.|.++|-++.+
T Consensus 402 ~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 402 LVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred HHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccc
Confidence 5789999999999999999876321 233446788887777766654455788999999999887766543
Q ss_pred C--CCC----CCccc---cchhhHhhhhhhhc
Q 026025 219 P--EKL----PDVGI---FSQPNLMMEHSCRS 241 (244)
Q Consensus 219 ~--~~~----~d~~y---s~~~l~~l~~~~~~ 241 (244)
+ ++. .=.+. .|.|+..|+.+-..
T Consensus 482 ~~eg~~~~~~~~~~~~~~~~~p~~~lg~y~~~ 513 (517)
T COG1657 482 EREGGFNCNFAIGYPYYLAYFPIIALGRYGGQ 513 (517)
T ss_pred eecccCCCCcceeeeeEEeecCchhhcccccc
Confidence 3 211 11111 23778888776543
No 53
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.12 E-value=2.7e-09 Score=91.51 Aligned_cols=144 Identities=19% Similarity=0.111 Sum_probs=100.1
Q ss_pred CHHHHHHHHHhcccCCCCcCCCCCC-CCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHhccCCCCCccCCCC----
Q 026025 53 DEEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW---- 124 (244)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~-~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~~---- 124 (244)
.+++++++|.++|++||||+.+++. .++...|.+++.+|........++ ++++++||.+.|.+||+|.....
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~ 129 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR 129 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence 4667899999999999999999887 889999999999998765432233 78899999999999999976432
Q ss_pred -----CCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHH
Q 026025 125 -----GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD 199 (244)
Q Consensus 125 -----~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~ 199 (244)
..++...|..++.+|...|......++++++||.+.... ..++........+|.+++. ....+
T Consensus 130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~ 197 (282)
T cd02891 130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRAD 197 (282)
T ss_pred hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHH
Confidence 123333455566666666654445778999999986642 2333444445566666664 22244
Q ss_pred HHHHHHHcc
Q 026025 200 LLGWWLCER 208 (244)
Q Consensus 200 ~~~~wL~~~ 208 (244)
+.++-+...
T Consensus 198 ~~l~~l~~~ 206 (282)
T cd02891 198 EALKKLLEA 206 (282)
T ss_pred HHHHHHHHH
Confidence 555555544
No 54
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.06 E-value=5.7e-10 Score=103.16 Aligned_cols=114 Identities=20% Similarity=0.306 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcccCCCCcc-ccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccCCCCcCCCC-------
Q 026025 6 ADKHVKYIISVEKKKDSFE-SVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNI------- 75 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~-~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~dGgf~~~~------- 75 (244)
++++++||++.|.+||+|. .|+ ...+.+|.+++.+|.-.|.. +-...+++++||++.|++||||+..+
T Consensus 591 i~~av~~ie~~Q~~DGSWyGsWg--vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~ 668 (760)
T KOG0497|consen 591 IEKAVEFIEKLQLPDGSWYGSWG--VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKR 668 (760)
T ss_pred HHHHHHHHHHcCCCCCcccchhh--HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCcccc
Confidence 5789999999999999984 454 68888999999999999985 33468899999999999999999874
Q ss_pred -----CCCCchhhHHHHHHHHHHhcCCCcc--CHHHHHHHHHhccCCCCCccC
Q 026025 76 -----GHDPHVLYTLSAVQVLALFDKVDIL--DADKVSNYIVGLQNEDGSFSG 121 (244)
Q Consensus 76 -----~~~~~~~~T~~al~~L~~l~~~~~~--~~~~~~~~l~~~q~~dGgf~~ 121 (244)
|..+++..|..|+.+|.+.+..++. .+++++..|...|.++|-|..
T Consensus 669 Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpq 721 (760)
T KOG0497|consen 669 YIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQ 721 (760)
T ss_pred ccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcch
Confidence 3468999999999999998875443 689999999999999998874
No 55
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.58 E-value=6.2e-07 Score=75.79 Aligned_cols=150 Identities=21% Similarity=0.200 Sum_probs=93.8
Q ss_pred HHHHHHhcccCCCCcCCC-CCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHhccCCCCCccCCCC-------C
Q 026025 57 VISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW-------G 125 (244)
Q Consensus 57 ~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~~-------~ 125 (244)
+.+-+++.+++||+|+.+ ...++++.-|.+++..|....+.-.+| +.++++||.+.|++||+|..... +
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g 81 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG 81 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence 345678899999999999 677899999999999999887764444 68899999999999999975311 1
Q ss_pred --CCChhhHHHHHHHHHhhccC-------ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Q 026025 126 --EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (244)
Q Consensus 126 --~~d~~~ty~al~~l~~l~~~-------~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~ 196 (244)
..++..|-.++.+|.-.+.. ....++++++||.+... ...+++....+--+|.+++ +..
T Consensus 82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~Y~lAl~aYAL~la~--~~~ 149 (246)
T PF07678_consen 82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDPYTLALVAYALALAG--DSP 149 (246)
T ss_dssp GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSHHHHHHHHHHHHHTT--TCH
T ss_pred CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCHHHHHHHHHHHHhhc--ccc
Confidence 11222322233333333311 13467899999987621 1233333332223344554 345
Q ss_pred CHHHHHHHHHcccccCccccCC
Q 026025 197 DKDLLGWWLCERQVKSGGLNGR 218 (244)
Q Consensus 197 ~~~~~~~wL~~~Q~~~GGf~~~ 218 (244)
..+.+.+-|.+....+||...+
T Consensus 150 ~~~~~~~~L~~~a~~~~~~~~W 171 (246)
T PF07678_consen 150 QASKLLNKLNSMATTEGGLRYW 171 (246)
T ss_dssp HHHHHHHHHHCHCEETTTTCEE
T ss_pred hHHHHHHHHHHhhhhccccCcc
Confidence 5677888888877666665333
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.49 E-value=2e-07 Score=85.15 Aligned_cols=170 Identities=21% Similarity=0.230 Sum_probs=110.6
Q ss_pred HHHHHHhcccCCCCcCCCC--CCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCC---------
Q 026025 57 VISWILKCQDESGGFAGNI--GHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWG--------- 125 (244)
Q Consensus 57 ~i~~l~~~q~~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~--------- 125 (244)
..+|-...+...|||+... ...++...|-.++..+.... +..+.++.+.|+...|+..|||......
T Consensus 238 ~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~--~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L 315 (517)
T COG1657 238 YADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQ--SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLL 315 (517)
T ss_pred hhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhc--chhhHHhhhhHhhhcccccCceeeeccccccHHHhhC
Confidence 3334333344556666554 36788888888888776544 3445677999999999999998742110
Q ss_pred -------CCC---hhhHHHHHHHHHhhcc-CC---hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026025 126 -------EVD---TRFSYIAICCLSILQR-LD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (244)
Q Consensus 126 -------~~d---~~~ty~al~~l~~l~~-~~---~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~ 191 (244)
..+ +.-|...+..|..++. ++ ...++++++|+++.|.++|.|-..-+ .-..+.|.-++.+|.+.+
T Consensus 316 ~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~-v~~iY~~s~a~~~l~~~g 394 (517)
T COG1657 316 PPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG-VCYIYGTSGALSALALVG 394 (517)
T ss_pred CHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE-EEEEEehhhhhhhhhccC
Confidence 001 1112223333333332 12 35689999999999999998855432 123334555666666666
Q ss_pred CCC--CCCHHHHHHHHHcccccCccccCCCCCCCCccccc
Q 026025 192 ALH--HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFS 229 (244)
Q Consensus 192 ~~~--~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~ 229 (244)
..+ ...+..++.|+..+|+++|||+..-...+|..|++
T Consensus 395 ~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~ 434 (517)
T COG1657 395 ETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTG 434 (517)
T ss_pred ccccchHHHHHHHHHhhhccccCCCccccccccccccccc
Confidence 533 23478899999999999999999888788888777
No 57
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.02 E-value=9.3e-05 Score=63.42 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHhcCCC-----ccCHHHHHHHHHhccCCCCCccCCCC-C-CCChhhHHH---HHHHHHhhccC------
Q 026025 82 LYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDGSFSGDIW-G-EVDTRFSYI---AICCLSILQRL------ 145 (244)
Q Consensus 82 ~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~q~~dGgf~~~~~-~-~~d~~~ty~---al~~l~~l~~~------ 145 (244)
..|...|..|+.+-... .--..++++||.+.|.++|||..... . ...-.-||. .+.++.+|..+
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~ 123 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDP 123 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCC
Confidence 46777777776653211 11258899999999999999975321 1 101111221 22333333211
Q ss_pred ----C-------hhhHHHHHHHHHhcCCCCCCC----CCCCCC-----------CcchhHHHHHHHHHHHhCCCCCC---
Q 026025 146 ----D-------KINVDKAVEYIVSCKNLDGGF----GCTPGG-----------ESHSGQIFCCVGALAIAGALHHV--- 196 (244)
Q Consensus 146 ----~-------~~~~e~~~~~i~~~Q~~dGGf----~~~p~~-----------~~~~~~T~~al~aL~~l~~~~~~--- 196 (244)
+ ...++|+++||+++|-++||+ +..-.. |+..-.+.-.+..+..|...+.+
T Consensus 124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~ 203 (290)
T TIGR02474 124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAE 203 (290)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHH
Confidence 0 235789999999999888755 332110 22111222223334444333222
Q ss_pred ---CHHHHHHHHHccc
Q 026025 197 ---DKDLLGWWLCERQ 209 (244)
Q Consensus 197 ---~~~~~~~wL~~~Q 209 (244)
.+++++.|+.+..
T Consensus 204 i~~ai~~A~~W~~~~~ 219 (290)
T TIGR02474 204 IKEAIRAGVAWFDTSR 219 (290)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3778999998875
No 58
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.62 E-value=0.00029 Score=60.43 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhcccCCCCcCCCCC----CCCchh----hHHHHHHHHHHhcC----CCc----------cCHHHHHHHHH
Q 026025 53 DEEDVISWILKCQDESGGFAGNIG----HDPHVL----YTLSAVQVLALFDK----VDI----------LDADKVSNYIV 110 (244)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~----~T~~al~~L~~l~~----~~~----------~~~~~~~~~l~ 110 (244)
..+++++||++.|+++|||+.+.. +..|+. .+..+|..|..+.. +.. ..++++++||+
T Consensus 68 A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~IL 147 (290)
T TIGR02474 68 AARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECIL 147 (290)
T ss_pred HHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999987642 222221 12334445543311 110 12588999999
Q ss_pred hccCCCCCccCCCCC---------------CCC-hh--hHHHHHHHHHhhccCCh---hhHHHHHHHHHhcCCCC
Q 026025 111 GLQNEDGSFSGDIWG---------------EVD-TR--FSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLD 164 (244)
Q Consensus 111 ~~q~~dGgf~~~~~~---------------~~d-~~--~ty~al~~l~~l~~~~~---~~~e~~~~~i~~~Q~~d 164 (244)
+.|..+||+.+.+.. |+. +. -+-.++..|.-+...++ ..++.+++|+.+.+.++
T Consensus 148 ktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g 222 (290)
T TIGR02474 148 KTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRG 222 (290)
T ss_pred HhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 999998876543321 111 11 12222333332322221 25788999999988653
No 59
>PLN02279 ent-kaur-16-ene synthase
Probab=97.47 E-value=0.0038 Score=60.85 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCC----CC
Q 026025 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH----DP 79 (244)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~----~~ 79 (244)
+..+.+++-|++..+.- + -.+....|.|+...=+. +..........++||+..|.+||+||..+.. .-
T Consensus 33 ~~~~~~~~~i~~~l~~~---e----~s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D 104 (784)
T PLN02279 33 VSFEGTKERIKKMFDKV---E----LSVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKD 104 (784)
T ss_pred ccchhHHHHHHHHhccC---c----CCCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHH
Confidence 34466677777665533 1 12445668998766555 3322224678999999999999999865322 23
Q ss_pred chhhHHHHHHHHHHhcCCCccCHHHHHHHHHh
Q 026025 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVG 111 (244)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~ 111 (244)
.+.+|.++|.+|.--+..+ ..+++.+.||.+
T Consensus 105 ~ll~TlAcvlAL~~w~~~~-~~~~~gl~fi~~ 135 (784)
T PLN02279 105 ALSSTLASILALKKWGVGE-EQINKGLQFIEL 135 (784)
T ss_pred hhHHHHHHHHHHHHHhcCc-ccchhhHHHHHH
Confidence 5689999999987654321 123555566663
No 60
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.40 E-value=0.0038 Score=60.76 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCC--CCCchhhHHHHHHHHHHhcCCCccCHHHHHHH
Q 026025 31 LRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILDADKVSNY 108 (244)
Q Consensus 31 ~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~ 108 (244)
+..+.|.|+...=.+-|...+ .....++||+..|.+||+||..+. ..-.+.+|.+++.+|.--+.. ...+++.+.|
T Consensus 95 ~S~YDTAWVAmVp~~~g~~~p-~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~f 172 (800)
T PLN02592 95 ISAYDTAWVALVEDINGSGTP-QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH-PEKCEKGMSF 172 (800)
T ss_pred CcHHHhHHHhhcccCCCCCCC-CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc-HHHHHHHHHH
Confidence 455679994333333122222 456899999999999999987532 123568999999888653322 1125677888
Q ss_pred HHhc
Q 026025 109 IVGL 112 (244)
Q Consensus 109 l~~~ 112 (244)
|.+.
T Consensus 173 i~~n 176 (800)
T PLN02592 173 FREN 176 (800)
T ss_pred HHHH
Confidence 8753
No 61
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0047 Score=63.66 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=116.5
Q ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHH-------hcccCCCCcCCCCC--CCCchhhHHHHHHHHHHhcCCCccC---HH
Q 026025 36 AYWGLTTLDILGKLDAVDEEDVISWIL-------KCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILD---AD 103 (244)
Q Consensus 36 ~y~al~~l~llg~~~~~~~~~~i~~l~-------~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~---~~ 103 (244)
.++++.=|...+...++..++++++|. ..+++||.|+.+-. ..+...-|.+++.++....++-.+| +.
T Consensus 948 ni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~ 1027 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVIT 1027 (1436)
T ss_pred hhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHH
Confidence 456666677777665556667777664 44568999988865 6677888888898887766543333 68
Q ss_pred HHHHHHHhccCCCCCccCCC--------CCCC--------------Chh---hH-----------------HHHHHHHHh
Q 026025 104 KVSNYIVGLQNEDGSFSGDI--------WGEV--------------DTR---FS-----------------YIAICCLSI 141 (244)
Q Consensus 104 ~~~~~l~~~q~~dGgf~~~~--------~~~~--------------d~~---~t-----------------y~al~~l~~ 141 (244)
++++||..+|.++|+|.... ++.. |.. .+ |.+-.+...
T Consensus 1028 ~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ayA 1107 (1436)
T KOG1366|consen 1028 QALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLEESLDSGSMDVYTVAITAYA 1107 (1436)
T ss_pred HHHHHHHHhhccCceEeccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHhhccCccccccchHHHHHHH
Confidence 89999999999999996321 1111 111 11 110000001
Q ss_pred hcc-CChhhHHHHHHHHHhcCCCCC----CCC----------CCC-CCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 026025 142 LQR-LDKINVDKAVEYIVSCKNLDG----GFG----------CTP-GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL 205 (244)
Q Consensus 142 l~~-~~~~~~e~~~~~i~~~Q~~dG----Gf~----------~~p-~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL 205 (244)
+.. ..+...+ ++.=+++.-...| .|. ..+ ....+...|.+|+.++..+...+ .....++||
T Consensus 1108 l~l~~sp~a~~-~~~~l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~~~~--~~~pivrWl 1184 (1436)
T KOG1366|consen 1108 LQLAKSPQAAK-ALAKLKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLAQVD--YALPIVRWL 1184 (1436)
T ss_pred HHhccCchHHH-HHHhhhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhcccC--cCchhHhhh
Confidence 110 0111112 2222322111111 111 111 12457789999998888887654 456689999
Q ss_pred HcccccCccccCCCCCCCCccccchhhHhhhhhhhcc
Q 026025 206 CERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRSS 242 (244)
Q Consensus 206 ~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~~ 242 (244)
.+.++..|||+---+ +.-+|.+|.+|...+
T Consensus 1185 ~~qr~~~GGf~STQd-------TvvalqaLs~y~~~~ 1214 (1436)
T KOG1366|consen 1185 VEQRNALGGFSSTQD-------TVVALQALSEYAALS 1214 (1436)
T ss_pred hhhhcccCceeehHH-------HHHHHHHHHHhhhhc
Confidence 998999999974322 346777777776543
No 62
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=96.37 E-value=0.0095 Score=51.25 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHhcCCCc-----cCHHHHHHHHHhccCCCCCccCCC-CC-CCChhhHH---HHHHHHHhhccC------
Q 026025 82 LYTLSAVQVLALFDKVDI-----LDADKVSNYIVGLQNEDGSFSGDI-WG-EVDTRFSY---IAICCLSILQRL------ 145 (244)
Q Consensus 82 ~~T~~al~~L~~l~~~~~-----~~~~~~~~~l~~~q~~dGgf~~~~-~~-~~d~~~ty---~al~~l~~l~~~------ 145 (244)
..|...|..|+.+..... -...++++||.+.|.++|||.... .. .-+...|| ..+.++.+|...
T Consensus 39 ~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~ 118 (289)
T PF09492_consen 39 DATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGD 118 (289)
T ss_dssp GTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TT
T ss_pred hhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCC
Confidence 467788888776532211 125789999999999999998642 11 11112233 233444444221
Q ss_pred ----C-------hhhHHHHHHHHHhcCCC----CCCCCCCCCC-----------CcchhHHHHHHHHHHHhCCCCCC---
Q 026025 146 ----D-------KINVDKAVEYIVSCKNL----DGGFGCTPGG-----------ESHSGQIFCCVGALAIAGALHHV--- 196 (244)
Q Consensus 146 ----~-------~~~~e~~~~~i~~~Q~~----dGGf~~~p~~-----------~~~~~~T~~al~aL~~l~~~~~~--- 196 (244)
+ ...++|++++|+.+|-. --+|+..-.. |+..-.+.-.+..+..|..++.+
T Consensus 119 ~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~ 198 (289)
T PF09492_consen 119 FAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPE 198 (289)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHH
Confidence 1 12578999999999972 2466543110 11111111122333444333322
Q ss_pred ---CHHHHHHHHHccccc
Q 026025 197 ---DKDLLGWWLCERQVK 211 (244)
Q Consensus 197 ---~~~~~~~wL~~~Q~~ 211 (244)
.++++++||.+...+
T Consensus 199 v~~aI~~AvaWl~~~ki~ 216 (289)
T PF09492_consen 199 VLAAIEAAVAWLESVKIP 216 (289)
T ss_dssp HHHHHHHHHHHHCCTSEE
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 267899999887543
No 63
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.11 Score=53.90 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=52.8
Q ss_pred HHHHHHHHHH-------cccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCC
Q 026025 6 ADKHVKYIIS-------VEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG 73 (244)
Q Consensus 6 ~~~~~~yl~~-------~q~~dg~~~~~~~--~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~ 73 (244)
++++++||+. .+++||+|..++. .....|.|.|++.++....... +....++++||...|.++|.|-.
T Consensus 966 k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 966 KRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence 3566777765 3469999987776 4677888999999998876542 33577899999999999998864
Q ss_pred C
Q 026025 74 N 74 (244)
Q Consensus 74 ~ 74 (244)
.
T Consensus 1046 ~ 1046 (1436)
T KOG1366|consen 1046 V 1046 (1436)
T ss_pred c
Confidence 3
No 64
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.86 E-value=0.33 Score=47.68 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=43.6
Q ss_pred HHHHHHhhccCC--hhhHHHHHHHHHhcCCCCC-CCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccccc
Q 026025 135 AICCLSILQRLD--KINVDKAVEYIVSCKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (244)
Q Consensus 135 al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dG-Gf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~ 211 (244)
.+-+|.-+|... ...++.+.++|.++-...| ||+. ....+|...|..+.-.|...|.. +..+-..+| ..
T Consensus 316 lVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFRLLRqhGy~--VS~DvF~~F-----~~ 387 (800)
T PLN02592 316 AVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFRLLRLHGHQ--VSADVFKHF-----EK 387 (800)
T ss_pred HHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHHHHHHcCCC--CChHHHHhh-----cC
Confidence 344444444321 2356778888877533333 3421 12357999999999999998874 333433333 22
Q ss_pred CccccCCC
Q 026025 212 SGGLNGRP 219 (244)
Q Consensus 212 ~GGf~~~~ 219 (244)
+|.|...+
T Consensus 388 ~g~F~~~~ 395 (800)
T PLN02592 388 GGEFFCFA 395 (800)
T ss_pred CCCccccc
Confidence 66775443
No 65
>PLN02279 ent-kaur-16-ene synthase
Probab=94.87 E-value=1.8 Score=42.75 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=35.5
Q ss_pred HHHHHHHHcccCCCCccccccc----cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh
Q 026025 8 KHVKYIISVEKKKDSFESVVME----HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63 (244)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~----~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~ 63 (244)
..++||.+-|.+||+|+..... .-.+..|.-++.+|.-=+..+ ...++.+.||.+
T Consensus 77 ~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~-~~~~~gl~fi~~ 135 (784)
T PLN02279 77 ECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE-EQINKGLQFIEL 135 (784)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc-ccchhhHHHHHH
Confidence 4789999999999999743111 124455666666666544433 245777777764
No 66
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=93.65 E-value=0.28 Score=42.31 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhcccCCCCcCCCC----CCCCchhhH-HHHHHHHHHhc-------CCCcc----------CHHHHHHHHH
Q 026025 53 DEEDVISWILKCQDESGGFAGNI----GHDPHVLYT-LSAVQVLALFD-------KVDIL----------DADKVSNYIV 110 (244)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~----~~~~~~~~T-~~al~~L~~l~-------~~~~~----------~~~~~~~~l~ 110 (244)
..+++++||++.|.++|||.... ++..|+..- -..+.+|.+|. .+.-+ .+++++++|+
T Consensus 63 A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL 142 (289)
T PF09492_consen 63 AFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCIL 142 (289)
T ss_dssp HHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998762 222232100 01233333331 12212 2588999999
Q ss_pred hccCCC----CCccC------------CCCCCCChhhHHHHHHHHHhhcc--CCh---hhHHHHHHHHHhcCCCCCCC
Q 026025 111 GLQNED----GSFSG------------DIWGEVDTRFSYIAICCLSILQR--LDK---INVDKAVEYIVSCKNLDGGF 167 (244)
Q Consensus 111 ~~q~~d----Ggf~~------------~~~~~~d~~~ty~al~~l~~l~~--~~~---~~~e~~~~~i~~~Q~~dGGf 167 (244)
++|-.. -+|+. +....+.+...=++-.+..++.. .++ ..++.+++|+.+.+-++.-|
T Consensus 143 ~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 143 KTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp HHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred HHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 999732 34542 11111222222223233333332 221 25788999999887655444
No 67
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=92.50 E-value=5.7 Score=38.34 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=86.2
Q ss_pred cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHH
Q 026025 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI 109 (244)
Q Consensus 30 ~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l 109 (244)
.+++..+||++.++..||...+ +.+.+++++.+.-.+. .+++...|+|+.+...++ -...-..++.+-+
T Consensus 46 ~~dLes~yyav~glk~Lg~~~~-~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~-C~~~~~~~~~~~l 114 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLLGIKVP-DSKAACKFLKKALDES---------SNDLESLFYAASASKALK-CKVSVSNEVKSLL 114 (636)
T ss_pred cccHHHHHHHHhhHHHhCCCCC-ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcC-CcccCcHHHHHHH
Confidence 4678889999999999998765 4889999998854431 135888999998888776 2211134444445
Q ss_pred HhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHH
Q 026025 110 VGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALA 188 (244)
Q Consensus 110 ~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~ 188 (244)
...-++| +++...|.++.++..+|.. ...+.++.+.-|...+..|. ....+-+|+.+++
T Consensus 115 ~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~aa 174 (636)
T PF05817_consen 115 KAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYALHAAA 174 (636)
T ss_pred HHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHHH
Confidence 4443332 2455699999999999852 23366777777777665533 2233445555555
Q ss_pred HhC
Q 026025 189 IAG 191 (244)
Q Consensus 189 ~l~ 191 (244)
.++
T Consensus 175 ~L~ 177 (636)
T PF05817_consen 175 QLS 177 (636)
T ss_pred hhc
Confidence 554
No 68
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=90.36 E-value=1.4 Score=38.74 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhCCCCC----------cCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCc---cCH
Q 026025 36 AYWGLTTLDILGKLDA----------VDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI---LDA 102 (244)
Q Consensus 36 ~y~al~~l~llg~~~~----------~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~---~~~ 102 (244)
..-|+.+|..+..... ...+++++.|.+.|.+||-|| |+++|--|+++|...+.... -+-
T Consensus 189 ~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C 261 (326)
T PF01122_consen 189 GAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNC 261 (326)
T ss_dssp HHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHH
T ss_pred HHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHH
Confidence 4445666665544221 124567778888999999997 89999999999987765322 124
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCC
Q 026025 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGC 169 (244)
Q Consensus 103 ~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~ 169 (244)
.++.+++.+.. ++|.|.. + + .+..+|-.|..-...|+.. ..|+.++|-+..
T Consensus 262 ~k~~~~ll~~i-~~G~F~n-------P--~-a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~~ 312 (326)
T PF01122_consen 262 QKALDALLKEI-SQGAFQN-------P--M-AIAQILPALNGKTYLDVNS-----VDCSSPDGNLNP 312 (326)
T ss_dssp HHHHHHHHHHH-TTTTT-S-------H--H-HHHHHHHHHTT--GGGGGS-------SSS--EE---
T ss_pred HHHHHHHHHHh-hcCCCCC-------H--H-HHHHHHHHHcCCCccccCC-----CCCCCCCCcccc
Confidence 66788887754 5898874 1 1 2345554443223333321 458888887653
No 69
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=89.83 E-value=1.6 Score=38.29 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCC---CCHHHHHHHHHcccccCccccC
Q 026025 149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNG 217 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~---~~~~~~~~wL~~~Q~~~GGf~~ 217 (244)
.++++++.|++.|.+||-||. .+.|--|+.+|...+.... ++-.++.++|+.. .++|.|+.
T Consensus 216 ~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~n 279 (326)
T PF01122_consen 216 AIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-S
T ss_pred HHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCCC
Confidence 467788999999999999973 4568889998888876322 3356788888774 45888863
No 70
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=74.62 E-value=87 Score=30.43 Aligned_cols=170 Identities=19% Similarity=0.146 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcC-CCccCHHHHHHHHH
Q 026025 32 RLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIV 110 (244)
Q Consensus 32 ~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~ 110 (244)
++...||++.+...|+=... ...++.+-|.+.-++| +.+..-|+|+.++..++. .+..|.+++++-|.
T Consensus 86 ~~e~lfya~~~~~~L~C~~~-~~~~~~~~l~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~ 154 (636)
T PF05817_consen 86 DLESLFYAASASKALKCKVS-VSNEVKSLLKAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQ 154 (636)
T ss_pred hHHHHHHHHHHHhhcCCccc-CcHHHHHHHHHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHH
Confidence 57789999999999983222 2456666666655543 456778999999999864 22347788888888
Q ss_pred hccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCCh-----hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHH
Q 026025 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK-----INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVG 185 (244)
Q Consensus 111 ~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~-----~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~ 185 (244)
..+.+|.+- ...-.|+.+++.|+.... ..+|.++...- .-||..-...|+-+ .|...+.
T Consensus 155 ~~l~kdds~----------~s~g~al~~aa~L~~~a~l~~~~~~ieD~v~qaD---Ev~~~~LqFeggLs---~TA~vv~ 218 (636)
T PF05817_consen 155 ASLKKDDSL----------LSLGYALHAAAQLSKQADLADIVERIEDAVAQAD---EVDGKYLQFEGGLS---TTALVVR 218 (636)
T ss_pred HHhcccccH----------HHHHHHHHHHHhhccchhhhHHHHHHHHHHHhhh---hhcccceeecCCch---hhHHHHH
Confidence 888775522 222235555666653211 12333333222 22232222222222 3444444
Q ss_pred HHHHh----CCCCCCC---HHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhh
Q 026025 186 ALAIA----GALHHVD---KDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMME 236 (244)
Q Consensus 186 aL~~l----~~~~~~~---~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~ 236 (244)
++.-+ +...++. +-+..+||++|. .++...|..+-.-+|+.|+
T Consensus 219 g~~~la~~~~k~~~i~~dQivklanylLsrr--------~v~s~k~a~~l~~al~~L~ 268 (636)
T PF05817_consen 219 GIYKLADAVGKKPPIKEDQIVKLANYLLSRR--------SVQSPKDAFNLLEALKSLS 268 (636)
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHHHHHh
Confidence 44432 3333444 446789999874 2333434444445555544
No 71
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=69.33 E-value=1.1e+02 Score=29.42 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=36.8
Q ss_pred HHHHHHh-cCCC-CCCCCCCCC-----CCcchhHHHHHHHHHHHhCCCCCC-----------CHHHHHHHHHcccccCcc
Q 026025 153 AVEYIVS-CKNL-DGGFGCTPG-----GESHSGQIFCCVGALAIAGALHHV-----------DKDLLGWWLCERQVKSGG 214 (244)
Q Consensus 153 ~~~~i~~-~Q~~-dGGf~~~p~-----~~~~~~~T~~al~aL~~l~~~~~~-----------~~~~~~~wL~~~Q~~~GG 214 (244)
+++-|.+ +..+ +||+..-++ +.|=.-.|+|..-++..+++.... ...+.++|++++.++.|=
T Consensus 502 Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gl 581 (616)
T TIGR01577 502 MAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLGL 581 (616)
T ss_pred HHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCCC
Confidence 4555543 3332 466644332 234445688888888877764321 245678999988766664
Q ss_pred c
Q 026025 215 L 215 (244)
Q Consensus 215 f 215 (244)
+
T Consensus 582 l 582 (616)
T TIGR01577 582 L 582 (616)
T ss_pred C
Confidence 4
No 72
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=63.67 E-value=1.3e+02 Score=28.25 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=19.5
Q ss_pred CHHHHHHHHHhcccCCCCcCCCCC
Q 026025 53 DEEDVISWILKCQDESGGFAGNIG 76 (244)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~ 76 (244)
..+++|+.|.++|.+||-++..+.
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~ 107 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPE 107 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccc
Confidence 577899999999999987666543
No 73
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=46.04 E-value=1e+02 Score=26.82 Aligned_cols=65 Identities=12% Similarity=-0.016 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCC---C--CCcchhHHHHHHHHHHH-h--CCCCC----CCHHHHHHHHHcc-cccCcc
Q 026025 150 VDKAVEYIVSCKNLDGGFGCTP---G--GESHSGQIFCCVGALAI-A--GALHH----VDKDLLGWWLCER-QVKSGG 214 (244)
Q Consensus 150 ~e~~~~~i~~~Q~~dGGf~~~p---~--~~~~~~~T~~al~aL~~-l--~~~~~----~~~~~~~~wL~~~-Q~~~GG 214 (244)
.++.++.+.+.|.+||.|.... . ...+...|.....+|.. + +..+. ...+++.+.|.++ -.++|-
T Consensus 217 ~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 217 AKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 4567788889999999996543 2 34566666666666643 2 22211 1256788888888 466665
No 74
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=37.49 E-value=1.1e+02 Score=26.67 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHH----hhCCCCC------cCHHHHHHHHHhcccCCCCcCCCCCCC---CchhhHHHHHHHHHHh-----
Q 026025 33 LNGAYWGLTTLD----ILGKLDA------VDEEDVISWILKCQDESGGFAGNIGHD---PHVLYTLSAVQVLALF----- 94 (244)
Q Consensus 33 ~~~~y~al~~l~----llg~~~~------~~~~~~i~~l~~~q~~dGgf~~~~~~~---~~~~~T~~al~~L~~l----- 94 (244)
.++.-|++.++. .|....+ ...++.++.|.+.|.+||.|......+ +...++..|+.+.+++
T Consensus 186 sRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~ 265 (336)
T PF07470_consen 186 SRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRL 265 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHc
Confidence 345566666554 4433110 134467778889999999886553221 2233334444433332
Q ss_pred cCCCc----cCHHHHHHHHHhc-cCCCCC
Q 026025 95 DKVDI----LDADKVSNYIVGL-QNEDGS 118 (244)
Q Consensus 95 ~~~~~----~~~~~~~~~l~~~-q~~dGg 118 (244)
+-.+. ...+++++.|.+. -++||.
T Consensus 266 g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 266 GLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp TSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred CCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 11211 1257788889888 777776
No 75
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=36.43 E-value=58 Score=22.32 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=22.7
Q ss_pred HHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCC
Q 026025 139 LSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG 173 (244)
Q Consensus 139 l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~ 173 (244)
|.+||. .-+|.+++||++.-+..-||-...++
T Consensus 50 Ln~LGt---eIiEnAVefiLrSMtR~tgF~E~~dk 81 (88)
T PF15144_consen 50 LNLLGT---EIIENAVEFILRSMTRSTGFMEFEDK 81 (88)
T ss_pred HHHhhH---HHHHHHHHHHHHHhhcccCceecCCC
Confidence 445553 35799999999877777788665543
No 76
>PRK13617 psbV cytochrome c-550; Provisional
Probab=33.29 E-value=60 Score=25.84 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHH---hcCCCccCHHHHHHHHHhccCCCC-CccC
Q 026025 50 DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLAL---FDKVDILDADKVSNYIVGLQNEDG-SFSG 121 (244)
Q Consensus 50 ~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~---l~~~~~~~~~~~~~~l~~~q~~dG-gf~~ 121 (244)
++.+++..++||+.=+.-||.+..... |.. +....+ ++.++.-|++.+..||....+-+| .|++
T Consensus 98 ~r~nv~aLv~yikdP~sydg~~s~~e~---~P~-----~~~~~imP~~~~LsdeeL~alAayLl~~~k~~~~~wgg 165 (170)
T PRK13617 98 ARDNVDALVDYLKDPTSYDGEYSIADL---HPS-----MRSADLYPAMRDLNDEDLRLMAGYILVAPKVQGTQWGG 165 (170)
T ss_pred CCCCHHHHHHHHhChHhhcchhhcccc---Ccc-----ccccccCcccCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 446799999999988887887654422 211 001011 122444567889999999976555 5665
No 77
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=32.73 E-value=61 Score=35.02 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCC-CCcchhHHHHHHHHHHHhCC
Q 026025 149 NVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGA 192 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dGGf~~~p~-~~~~~~~T~~al~aL~~l~~ 192 (244)
.++.++.=+++.|..+|+|+..++ ..+|+--|.|++-.|.-...
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~e 1244 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRARE 1244 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhhh
Confidence 467788888999999999999877 67899999999988877643
No 78
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.21 E-value=3.9e+02 Score=23.98 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=83.7
Q ss_pred CCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHH---HHHHHhcC-CCccCHHHHHHHHHhccCCCCCccCCCCC
Q 026025 50 DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAV---QVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDIWG 125 (244)
Q Consensus 50 ~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al---~~L~~l~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~~~ 125 (244)
+...++++++||.+..... .++-..-++.+ .+|..++. .+...++..++.+.+....||=|+-.+..
T Consensus 130 ~~~~k~~l~~wL~~~~~~~---------~~~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~ 200 (361)
T PF10022_consen 130 DEEEKENLVDWLKQIRGIK---------PPDNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEF 200 (361)
T ss_pred CHHHHHHHHHHHHhcCcCC---------CccchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCcc
Confidence 4457889999999765432 12222333333 33333332 33334566777777777777733323333
Q ss_pred CCChhhHHHHH-----HHHHhhccCCh----hhHHHHHHHHHh---cCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC
Q 026025 126 EVDTRFSYIAI-----CCLSILQRLDK----INVDKAVEYIVS---CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL 193 (244)
Q Consensus 126 ~~d~~~ty~al-----~~l~~l~~~~~----~~~e~~~~~i~~---~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~ 193 (244)
..|= |.-+|+ -.+.+.+..++ .-.+++.+|... .-.+||.+-....+-..-..++-.++++++++.+
T Consensus 201 ~~DY-Yns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~~GRSltYRfA~~a~~~~~a~~~~l 279 (361)
T PF10022_consen 201 QFDY-YNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAPPFGRSLTYRFAAFAFLAAAALAGVL 279 (361)
T ss_pred CCcc-hHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCccccHHHHHHHHHHHHHHHHcCCC
Confidence 3332 112222 22233343321 235667777765 3467886643222222222234445556666652
Q ss_pred CC-C-C-------HHHHHHHHHcc-cc--cCc----cccCCC----CCCCCccccchhhHhh
Q 026025 194 HH-V-D-------KDLLGWWLCER-QV--KSG----GLNGRP----EKLPDVGIFSQPNLMM 235 (244)
Q Consensus 194 ~~-~-~-------~~~~~~wL~~~-Q~--~~G----Gf~~~~----~~~~d~~ys~~~l~~l 235 (244)
+. . + ..+.++|..+. .. .+| ||.+.- ....-+-..||+++++
T Consensus 280 p~~~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~F 341 (361)
T PF10022_consen 280 PEPLISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAF 341 (361)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHH
Confidence 22 2 2 23445555554 32 333 565532 2233334445777765
No 79
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=30.63 E-value=57 Score=35.23 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhcccCCCCcCCCCC-CCCchhhHHHHHHHHHHhc
Q 026025 53 DEEDVISWILKCQDESGGFAGNIG-HDPHVLYTLSAVQVLALFD 95 (244)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~-~~~~~~~T~~al~~L~~l~ 95 (244)
..+.++.-|.++|..+|+|+..++ .+++...|.+++..|....
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~ 1243 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAR 1243 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhh
Confidence 455678888999999999999887 7889999999998876553
No 80
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=30.61 E-value=58 Score=31.68 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCC---CC----CCchhhHHHHHHHHHHhcCCCc---
Q 026025 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNI---GH----DPHVLYTLSAVQVLALFDKVDI--- 99 (244)
Q Consensus 30 ~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~---~~----~~~~~~T~~al~~L~~l~~~~~--- 99 (244)
..-++..++++.+|..+|... ..++.++||.+.|.++|.|-... |. +-.+..|...|.++..+.+...
T Consensus 294 yvW~RD~a~~a~AL~~~G~~~--~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~ 371 (648)
T TIGR01535 294 LVWPRDLYQVANAFLAAGDVD--SALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFY 371 (648)
T ss_pred EEehhhHHHHHHHHHHCCCHH--HHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHH
Confidence 455677999999999999753 57899999999999998874321 11 1122334444444444432221
Q ss_pred -cCHHHHHHHHHhcc
Q 026025 100 -LDADKVSNYIVGLQ 113 (244)
Q Consensus 100 -~~~~~~~~~l~~~q 113 (244)
.-++++++||.+.-
T Consensus 372 ~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 372 DKMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHHHHHHHHHcC
Confidence 12688899998864
No 81
>PRK13621 psbV cytochrome c-550; Provisional
Probab=28.13 E-value=1.5e+02 Score=23.63 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHHHhccCCCCC---ccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCC
Q 026025 102 ADKVSNYIVGLQNEDGS---FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCT 170 (244)
Q Consensus 102 ~~~~~~~l~~~q~~dGg---f~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~ 170 (244)
++.+++|++.-+..+|. |..++.. ...+++.+++...+||+..-...+||+..
T Consensus 109 I~~LV~~iknPms~kg~~~~~~~~mps----------------~~~LSdeEL~aIAaYLL~qA~~~~~Wg~~ 164 (170)
T PRK13621 109 IAALVAYQRDPMSYDGSEESYGCRQVP----------------EDWMTDEELQNLAAFILRAAQKAPGWGTE 164 (170)
T ss_pred HHHHHHHhhCCCCCCcccccccccCCc----------------cCCCCHHHHHHHHHHHHhhhhhccCCCCc
Confidence 46778888887777663 3332210 03356778899999999765557789753
No 82
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=25.90 E-value=6e+02 Score=24.42 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=31.5
Q ss_pred CCchhhHHHHHHHHHHhcCCCcc-----------CHHHHHHHHHhccCCCCCccC
Q 026025 78 DPHVLYTLSAVQVLALFDKVDIL-----------DADKVSNYIVGLQNEDGSFSG 121 (244)
Q Consensus 78 ~~~~~~T~~al~~L~~l~~~~~~-----------~~~~~~~~l~~~q~~dGgf~~ 121 (244)
.|-+.+|++....+..+++.... ..++.++|+.+..++.|-+..
T Consensus 530 ~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gll~E 584 (616)
T TIGR01577 530 NPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLGLLPE 584 (616)
T ss_pred CcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 46678999988888877654311 235678899998888887753
No 83
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=20.89 E-value=1.3e+02 Score=23.59 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCCCCCC----CCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccC
Q 026025 149 NVDKAVEYIVSCKNLDGG----FGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dGG----f~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (244)
+++..++|++.-+..+|. ....| ++ ..+...++++...||+..-...+||++
T Consensus 97 ~I~~Lv~~iknP~s~kG~~~~~~~~mp---~~--------------~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 97 TIQSLVAYQRDPMSYDGSEESYGCRPV---PE--------------DWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHhhCCcccCcccccccccCC---cc--------------cCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 578899999998887772 22111 11 334556788899999876445668765
No 84
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=20.81 E-value=2e+02 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCC
Q 026025 149 NVDKAVEYIVSCKNLDGGFGCTP 171 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dGGf~~~p 171 (244)
..++.++.|.+||.+||=++..+
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~ 106 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYP 106 (520)
T ss_pred HHHHHHHHHHHhccCCceecccc
Confidence 45778999999999998665544
No 85
>PRK13621 psbV cytochrome c-550; Provisional
Probab=20.24 E-value=1.5e+02 Score=23.62 Aligned_cols=26 Identities=4% Similarity=0.198 Sum_probs=20.1
Q ss_pred CCccCHHHHHHHHHhccCCCCCccCC
Q 026025 97 VDILDADKVSNYIVGLQNEDGSFSGD 122 (244)
Q Consensus 97 ~~~~~~~~~~~~l~~~q~~dGgf~~~ 122 (244)
++.-+++.+..||...-+..++|++.
T Consensus 139 LSdeEL~aIAaYLL~qA~~~~~Wg~~ 164 (170)
T PRK13621 139 MTDEELQNLAAFILRAAQKAPGWGTE 164 (170)
T ss_pred CCHHHHHHHHHHHHhhhhhccCCCCc
Confidence 45556888999998877777888864
Done!