BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026027
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 244
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/244 (70%), Positives = 198/244 (81%)
Query: 1 MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQ 60
MA AK VPE V+ K++R E WA KKQ++ K E+ K+IY RA+QYA E+ Q
Sbjct: 1 MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQ 60
Query: 61 EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120
+K L+QLKREA++KGGFYV PEAK LF++RIRGINA+ PKTKKILQLLRLRQIFNGVFLK
Sbjct: 61 DKELVQLKREARMKGGFYVSPEAKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLK 120
Query: 121 VNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGI 180
VNKAT+NML RVEPYVTYGYPNLKSVRELIYKRGYGKL+KQRI L +N +IE+ LGK I
Sbjct: 121 VNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEGLGKHNI 180
Query: 181 ICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNRENYVNELI 240
IC+EDL+HEI+TVGPHFKEANNFLWPF RNHYVEGGDAGNRENY+N+L+
Sbjct: 181 ICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLV 240
Query: 241 RRMN 244
RRMN
Sbjct: 241 RRMN 244
>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 270
Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/245 (58%), Positives = 178/245 (72%), Gaps = 7/245 (2%)
Query: 4 VEAKAPVPESVLKKQKRN----EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAE 59
++ K P LKK++RN + L KK L+T +K + RKLIY +AK Y KE+ +
Sbjct: 29 LKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR---RKLIYEKAKHYHKEYRQ 85
Query: 60 QEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFL 119
+ I++ R A+ G FYV E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+
Sbjct: 86 MYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFV 145
Query: 120 KVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFG 179
K+NKA++NML VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS+I ++LGKFG
Sbjct: 146 KLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFG 205
Query: 180 IICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNRENYVNEL 239
IICMEDLIHEI TVG FKEANNFLWPF H+VEGGDAGNRE+ +N L
Sbjct: 206 IICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRL 265
Query: 240 IRRMN 244
IRRMN
Sbjct: 266 IRRMN 270
>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 239
Score = 252 bits (643), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 118/234 (50%), Positives = 165/234 (70%)
Query: 10 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKR 69
VPE+V KK R+E+ AK ++ + S + + ++A++YA E+ EK ++ KR
Sbjct: 5 VPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKR 64
Query: 70 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 129
+A+ G FYV EAK+ F IRIRG+N + P K++L+L RLRQ+ NG F +VNKA++NM+
Sbjct: 65 KARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMI 124
Query: 130 HRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHE 189
RV P++T+GYP ++ +LIYKRG+ K++ QRI LTDN+I+EK+LGKFGI C+EDLIHE
Sbjct: 125 KRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDNTIVEKSLGKFGITCVEDLIHE 184
Query: 190 IMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNRENYVNELIRRM 243
I TVGPHFKEANNFLWPF R+ Y +GGD GNRE Y+N+L++ M
Sbjct: 185 ITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAM 238
>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|F Chain F, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 244
Score = 243 bits (621), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 164/237 (69%), Gaps = 2/237 (0%)
Query: 10 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKR 69
PES LKK K ++ A E K E R +I R Y KE+ E+ +IQ KR
Sbjct: 8 TPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKR 67
Query: 70 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 129
+AK G +YV+ + KL+F++RI+GIN I PK +K+LQLLRL +I +G F+KV KAT+ +L
Sbjct: 68 DAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELL 127
Query: 130 HRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHE 189
+EPYV YGYP+ ++R+L+YKRG+GK++KQR+ L+DN+IIE LGK+GI+ ++DLIHE
Sbjct: 128 KLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHE 187
Query: 190 IMTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNRENYVNELIRRMN 244
I+TVGPHFK+ANNFLWPF R H+++GG GNRE ++N+L++ MN
Sbjct: 188 IITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 244
>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 162
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 126/162 (77%), Gaps = 2/162 (1%)
Query: 85 LLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLK 144
L+F++RI+GIN I PK +K+LQLLRL +I +G F+KV KAT+ +L +EPYV YGYP+
Sbjct: 1 LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 60
Query: 145 SVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFL 204
++R+L+YKRG+GK++KQR+ L+DN+IIE LGK+GI+ ++DLIHEI+TVGPHFK+ANNFL
Sbjct: 61 TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 120
Query: 205 WPFXXXXXXXXXXXXR--NHYVEGGDAGNRENYVNELIRRMN 244
WPF R H+++GG GNRE ++N+L++ MN
Sbjct: 121 WPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 162
>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 213
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 126/162 (77%), Gaps = 2/162 (1%)
Query: 85 LLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLK 144
L+F++RI+GIN I PK +K+LQLLRL +I +G F+KV KAT+ +L +EPYV YGYP+
Sbjct: 52 LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 111
Query: 145 SVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFL 204
++R+L+YKRG+GK++KQR+ L+DN+IIE LGK+GI+ ++DLIHEI+TVGPHFK+ANNFL
Sbjct: 112 TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 171
Query: 205 WPFXXXXXXXXXXXXR--NHYVEGGDAGNRENYVNELIRRMN 244
WPF R H+++GG GNRE ++N+L++ MN
Sbjct: 172 WPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 213
>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 257
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 149/241 (61%), Gaps = 1/241 (0%)
Query: 4 VEAKA-PVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEK 62
+ AKA P PES +K+ ++ K+ + +K +KL Y+R +Y++E+ EK
Sbjct: 16 MPAKAVPAPESAIKRAAFKQQQTENFKKAIAANKVAAAALKKLAYSRGLKYSREYRSTEK 75
Query: 63 VLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
L L+R A+ G +Y++ + K+ + RIRGI + PK +KILQLLRLRQIFN VF+++N
Sbjct: 76 KLAGLRRNARQHGNYYLEAKPKVAVVTRIRGIAKVPPKQRKILQLLRLRQIFNTVFVRLN 135
Query: 123 KATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIIC 182
K NML VEPY+ YGYP+L +VR ++YKRG+ K++ QR+ +TDN +I+ I+C
Sbjct: 136 KPMENMLRAVEPYIAYGYPSLSTVRAMVYKRGHLKINGQRVKITDNQMIKDKYHNDDIVC 195
Query: 183 MEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNRENYVNELIRR 242
ED++++I G HF+ N LWPF R H+VEGGD GNR+ +N + R
Sbjct: 196 AEDIVNQIYACGKHFRTVTNGLWPFKLAPPAGGMRQKRRHFVEGGDYGNRDTLINRFLAR 255
Query: 243 M 243
M
Sbjct: 256 M 256
>pdb|3J21|Y Chain Y, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 155
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 86 LFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKS 145
L +IRIRG + + L +LRL ++ + V + + + ML + + Y+T+G N ++
Sbjct: 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAET 63
Query: 146 VRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLW 205
+ +LI KRG +K +TD + EK LG + +E+ +++ K+ N
Sbjct: 64 LAKLIRKRGRLIGNK---PVTDEYVKEK-LG----MTIEEFAQKVVNGEMSLKDLPNLKP 115
Query: 206 PFXXXXXXXX-XXXXRNHYVEGGDAGNRENYVNELIRRM 243
F + + EGG G R +NELI RM
Sbjct: 116 VFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERM 154
>pdb|3IPM|O Chain O, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|P Chain P, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|Q Chain Q, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|R Chain R, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|S Chain S, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|T Chain T, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|U Chain U, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 239
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 22 EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDP 81
EEWA QE+E K +E+ I N A+ E++L L+R L Y
Sbjct: 33 EEWAAGTLQEIEGIAKAAVEAHATIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQA 92
Query: 82 EA-KLLFIIRI 91
E + + IRI
Sbjct: 93 ETIRTVIAIRI 103
>pdb|1Z7Q|CC Chain c, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|DD Chain d, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|EE Chain e, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|FF Chain f, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|GG Chain g, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|HH Chain h, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|II Chain i, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|JJ Chain j, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|KK Chain k, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|LL Chain l, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|MM Chain m, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|NN Chain n, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|OO Chain o, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|PP Chain p, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 231
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 22 EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDP 81
EEWA QE+E K E+ +I N A+ E++L L+R L Y
Sbjct: 26 EEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQA 85
Query: 82 EA-KLLFIIRI 91
E + + IRI
Sbjct: 86 ETIRTVIAIRI 96
>pdb|1FNT|CC Chain c, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|DD Chain d, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|EE Chain e, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|FF Chain f, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|GG Chain g, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|HH Chain h, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|II Chain i, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|JJ Chain j, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|KK Chain k, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|LL Chain l, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|MM Chain m, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|NN Chain n, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|OO Chain o, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|PP Chain p, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 231
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 22 EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDP 81
EEWA QE+E K E+ +I N A+ E++L L+R L Y
Sbjct: 26 EEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQA 85
Query: 82 EA-KLLFIIRI 91
E + + IRI
Sbjct: 86 ETIRTVIAIRI 96
>pdb|1YA7|O Chain O, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|P Chain P, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|Q Chain Q, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|R Chain R, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|S Chain S, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|T Chain T, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|U Chain U, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|O Chain O, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|P Chain P, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|Q Chain Q, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|R Chain R, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|S Chain S, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|T Chain T, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|U Chain U, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|O Chain O, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|P Chain P, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|Q Chain Q, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|R Chain R, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|S Chain S, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|T Chain T, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|U Chain U, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 237
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 22 EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDP 81
EEWA QE+E K E+ +I N A+ E++L L+R L Y
Sbjct: 32 EEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQA 91
Query: 82 EA-KLLFIIRI 91
E + + IRI
Sbjct: 92 ETIRTVIAIRI 102
>pdb|3JRM|O Chain O, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|P Chain P, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|Q Chain Q, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|R Chain R, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|S Chain S, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|T Chain T, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|U Chain U, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 228
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 22 EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDP 81
EEWA QE+E K E+ +I N A+ E++L L+R L Y
Sbjct: 23 EEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQA 82
Query: 82 EA-KLLFIIRI 91
E + + IRI
Sbjct: 83 ETIRTVIAIRI 93
>pdb|3JSE|O Chain O, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|P Chain P, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|Q Chain Q, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|R Chain R, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|S Chain S, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|T Chain T, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|U Chain U, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 228
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 22 EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDP 81
EEWA QE+E K E+ +I N A+ E++L L+R L Y
Sbjct: 23 EEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQA 82
Query: 82 EA-KLLFIIRI 91
E + + IRI
Sbjct: 83 ETIRTVIAIRI 93
>pdb|3JTL|O Chain O, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|P Chain P, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|Q Chain Q, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|R Chain R, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|S Chain S, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|T Chain T, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|U Chain U, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 228
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 22 EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDP 81
EEWA QE+E K E+ +I N A+ E++L L+R L Y
Sbjct: 23 EEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQA 82
Query: 82 EA-KLLFIIRI 91
E + + IRI
Sbjct: 83 ETIRTVIAIRI 93
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 2 AEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQE 61
A EAK+ +KK +++ E +L K++ LE + KLES+ N+ + A+ ++++
Sbjct: 599 AVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKD 658
Query: 62 KVLIQLKREA 71
++ + +EA
Sbjct: 659 EIFALINKEA 668
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,719,594
Number of Sequences: 62578
Number of extensions: 249926
Number of successful extensions: 541
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 47
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)