Query 026027
Match_columns 244
No_of_seqs 209 out of 898
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_V RPL7, 60S ribosomal pro 100.0 2.6E-88 8.9E-93 598.1 24.4 236 9-244 4-239 (239)
2 3iz5_e 60S ribosomal protein L 100.0 4E-89 1.4E-93 605.2 16.2 244 1-244 1-244 (244)
3 3izc_e 60S ribosomal protein R 100.0 1.9E-87 6.4E-92 594.5 20.0 237 8-244 6-244 (244)
4 2zkr_w 60S ribosomal protein L 100.0 2.4E-86 8.1E-91 593.8 4.9 240 5-244 31-270 (270)
5 1vq8_W 50S ribosomal protein L 100.0 2.4E-63 8.4E-68 413.9 16.5 153 85-244 1-154 (154)
6 3j21_Y 50S ribosomal protein L 100.0 5.4E-62 1.9E-66 406.2 15.5 151 86-244 4-155 (155)
7 3jyw_F 60S ribosomal protein L 100.0 4.3E-62 1.5E-66 425.7 6.8 168 77-244 44-213 (213)
8 1bxy_A Protein (ribosomal prot 99.7 5.2E-18 1.8E-22 120.1 7.7 57 86-142 4-60 (60)
9 3r8s_Z 50S ribosomal protein L 99.7 5.5E-17 1.9E-21 114.1 7.2 57 84-140 2-58 (58)
10 2zjr_W 50S ribosomal protein L 99.7 2.2E-17 7.6E-22 114.9 5.0 55 86-140 1-55 (55)
11 3i5g_C Myosin catalytic light 38.8 29 0.001 26.8 3.9 46 139-192 100-151 (159)
12 2ahq_A Sigma-54, RNA polymeras 37.3 37 0.0013 24.2 3.8 44 139-185 14-57 (76)
13 2doa_A RNA polymerase II elong 31.5 20 0.00067 27.4 1.6 16 180-195 45-60 (104)
14 3i5g_B Myosin regulatory light 28.3 67 0.0023 24.4 4.4 18 179-196 100-117 (153)
15 4ex6_A ALNB; modified rossman 23.2 1.5E+02 0.0052 22.9 5.8 45 99-144 164-211 (237)
16 4h62_V Mediator of RNA polymer 23.1 16 0.00056 21.3 -0.1 19 167-189 10-28 (31)
17 3sd7_A Putative phosphatase; s 22.0 1.4E+02 0.0049 23.3 5.4 44 101-144 172-218 (240)
18 1xi4_J LCA, clathrin light cha 20.7 2.2E+02 0.0076 19.8 7.3 15 9-23 6-20 (70)
No 1
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=100.00 E-value=2.6e-88 Score=598.09 Aligned_cols=236 Identities=53% Similarity=0.937 Sum_probs=231.8
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeEEE
Q 026027 9 PVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFI 88 (244)
Q Consensus 9 ~vpE~~LKKrk~~~~~~~~~~~~~~~~k~~~~~~rk~~~krae~~vkeyr~~e~d~~r~kr~ak~~~~~~~~~e~kl~~V 88 (244)
+|||++|||||+++++++.+++++.+.++.++++++.+|+|||+|++||+++++|.+|++|+|+++|+||+|+||+++||
T Consensus 4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~kl~fV 83 (239)
T 4a17_V 4 FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAKVAFA 83 (239)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCCEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCccccCCCh
Q 026027 89 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDN 168 (244)
Q Consensus 89 irirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn 168 (244)
|||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++++|||||
T Consensus 84 irIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~Ltdn 163 (239)
T 4a17_V 84 IRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDN 163 (239)
T ss_dssp EECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEECCCS
T ss_pred EEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceecCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccccccccccccCCCCCChhHHHHHHHhhC
Q 026027 169 SIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN 244 (244)
Q Consensus 169 ~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~~~~~~~gG~~G~rg~~In~Li~rM~ 244 (244)
++||++||++||+|+|||||||+++|++|+++++|||||+||||+|||++++.+|.+||++||||+.||+||++|+
T Consensus 164 ~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~ 239 (239)
T 4a17_V 164 TIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML 239 (239)
T ss_dssp HHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred HHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999888999999999999999999999997
No 2
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=100.00 E-value=4e-89 Score=605.20 Aligned_cols=244 Identities=75% Similarity=1.212 Sum_probs=239.2
Q ss_pred CcccccCCCCchHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Q 026027 1 MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVD 80 (244)
Q Consensus 1 ~~~~~~~~~vpE~~LKKrk~~~~~~~~~~~~~~~~k~~~~~~rk~~~krae~~vkeyr~~e~d~~r~kr~ak~~~~~~~~ 80 (244)
|+.....+.|||++|||||+++++++++++++.+.++.++++++.+|+|||+|+++|+++++|.+|++|+|+++|+||+|
T Consensus 1 m~~~~~~~~vpE~llkkrk~~~~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~~~~~~~p 80 (244)
T 3iz5_e 1 MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVS 80 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHSCSCCCSCCC
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 77777778899999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCC
Q 026027 81 PEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDK 160 (244)
Q Consensus 81 ~e~kl~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~ 160 (244)
+||+++|||||||++|+||++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++++++
T Consensus 81 ~e~kl~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gML~~V~pyV~~G~pnlksv~eLi~KRG~~k~~~ 160 (244)
T 3iz5_e 81 PEAKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNK 160 (244)
T ss_dssp CCCCCEEEECCSCSTTSCHHHHHHHHHTCCCSTTEEEEECSCHHHHHHHTTTGGGCEEECCCHHHHHHHHHHHCCCCTTS
T ss_pred CCCceEEEEEecCcCCCCHHHHHHHHHcCCCccCCEEEEeCCHHHHHHHHHhhcceeeecCCHHHHHHHHHhhCeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccccccccccccCCCCCChhHHHHHH
Q 026027 161 QRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELI 240 (244)
Q Consensus 161 ~~~~ltdn~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~~~~~~~gG~~G~rg~~In~Li 240 (244)
+++|||||++||++||++||+|+|||||||+++|++|+++++|||||+||||+|||++++.||.+||++||||+.||+||
T Consensus 161 ~~i~ltdn~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~PFkL~~Pr~G~k~~~~~~~egG~~G~r~~~IN~Li 240 (244)
T 3iz5_e 161 QRIPLANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLV 240 (244)
T ss_dssp CCCCSSTHHHHTCSCCSSSCCCHHHHHHHHHHTCTTCSSSCCCSSCEECCCCTTCCSCTTSBTTTTCSBEECHHHHHHHH
T ss_pred ceecCChHHHHHHhccccCcccHHHHHHHHHhCccCHHHhhcccCCeeCCCCccccccCccccccCCCccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HhhC
Q 026027 241 RRMN 244 (244)
Q Consensus 241 ~rM~ 244 (244)
++||
T Consensus 241 ~rM~ 244 (244)
T 3iz5_e 241 RRMN 244 (244)
T ss_dssp TTCC
T ss_pred HHhC
Confidence 9997
No 3
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=100.00 E-value=1.9e-87 Score=594.51 Aligned_cols=237 Identities=51% Similarity=0.940 Sum_probs=232.8
Q ss_pred CCCchHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeEE
Q 026027 8 APVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLF 87 (244)
Q Consensus 8 ~~vpE~~LKKrk~~~~~~~~~~~~~~~~k~~~~~~rk~~~krae~~vkeyr~~e~d~~r~kr~ak~~~~~~~~~e~kl~~ 87 (244)
..|||++|||||+++++++++++++.+.+..++++++.+|+|||+|+++|+++++|.+|++|+|+++|+||+|+||+++|
T Consensus 6 ~~vpE~llkkrk~~~~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~~~~~~~p~e~kl~f 85 (244)
T 3izc_e 6 ILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVF 85 (244)
T ss_dssp CHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHSSCCCCSCCCCCCCCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCceEE
Confidence 36999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCccccCCC
Q 026027 88 IIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTD 167 (244)
Q Consensus 88 Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ltd 167 (244)
||||||++|+||++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++++||||
T Consensus 86 VirIRs~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gMLr~V~pyVt~G~pnlksv~eLi~KRG~~k~~~~~i~ltd 165 (244)
T 3izc_e 86 VVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSD 165 (244)
T ss_dssp EECCSCSSSCCHHHHHHHHHHTCCSTTEEEEECSCHHHHHHHHHHTTSCEEECCCHHHHHHHHHHHCCCCSSSCCCCSCH
T ss_pred EEEecCcCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHHhhHhhcccCCHHHHHHHHHhhCccccCCceecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccc--cccccccccCCCCCChhHHHHHHHhhC
Q 026027 168 NSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLK--KKRNHYVEGGDAGNRENYVNELIRRMN 244 (244)
Q Consensus 168 n~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~--~~~~~~~~gG~~G~rg~~In~Li~rM~ 244 (244)
|++||++||++||+|+|||||||+++|++|+++++|||||+||||+|||+ +++.||.+||++||||+.||+||++||
T Consensus 166 n~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~pFkL~~PrgG~~~~~~~~~~~egG~~G~r~~~IN~Li~rM~ 244 (244)
T 3izc_e 166 NAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 244 (244)
T ss_dssp HHHHTCCCCSSSCCSHHHHHHHHHHTCTTSTTTSSCSSCEECCCCGGGSSCSCTTCBTTTTSSBEECHHHHHHHHHHCC
T ss_pred hHHHHHhccccCceeHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccccCCCccccHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998 688999999999999999999999997
No 4
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.4e-86 Score=593.80 Aligned_cols=240 Identities=61% Similarity=1.018 Sum_probs=156.8
Q ss_pred ccCCCCchHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCe
Q 026027 5 EAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAK 84 (244)
Q Consensus 5 ~~~~~vpE~~LKKrk~~~~~~~~~~~~~~~~k~~~~~~rk~~~krae~~vkeyr~~e~d~~r~kr~ak~~~~~~~~~e~k 84 (244)
..+|.|||++|||||+++++++++++++.+.+..++++++.+|+|||+|+++|+++++|.+|++|+|+++|+||+|+||+
T Consensus 31 ~~~~~vpE~llKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~eyr~~~r~~ir~~r~akk~g~~yvp~e~k 110 (270)
T 2zkr_w 31 KKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPK 110 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCc
Confidence 34678999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCcccc
Q 026027 85 LLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIA 164 (244)
Q Consensus 85 l~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ 164 (244)
++||+||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++++++++||
T Consensus 111 l~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~ki~~k~i~ 190 (270)
T 2zkr_w 111 LAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIA 190 (270)
T ss_dssp CEEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCSSSSSCSC
T ss_pred eeEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccccCCeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccccccccccccCCCCCChhHHHHHHHhhC
Q 026027 165 LTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN 244 (244)
Q Consensus 165 ltdn~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~~~~~~~gG~~G~rg~~In~Li~rM~ 244 (244)
||||+|||++||++||+|+|||||||+++|+||+++++|||||+||||++||++++++|++||++||||++||+||++|+
T Consensus 191 LtdN~iIee~LG~~giiciEDliheI~t~g~~fk~~~~fl~pFkL~~P~~G~k~k~~~~~egG~~G~r~~~IN~Li~rM~ 270 (270)
T 2zkr_w 191 LTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270 (270)
T ss_dssp SSHHHHSSSSSCSSCCCSHHHHHHHTSSCSSCCSSSSSCCSCEECCCCSSCCSCSSCC-CCSCSCC-CCTTTTTTTTTCC
T ss_pred CCchHHHHhhccCcCcchHHHHHHHHHhccccHHHHhCcCCCeeCCCccccccccccccccCCcccccHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999997
No 5
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=100.00 E-value=2.4e-63 Score=413.86 Aligned_cols=153 Identities=16% Similarity=0.346 Sum_probs=149.8
Q ss_pred eEEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCcccc
Q 026027 85 LLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIA 164 (244)
Q Consensus 85 l~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ 164 (244)
++||+|+||.+|++|++++||++|||+|+|++||+++||+++|||++|+|||+|||||++||++||||||++++++ +|
T Consensus 1 l~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~--~~ 78 (154)
T 1vq8_W 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD--AD 78 (154)
T ss_dssp CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSC--CC
T ss_pred CEEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCC--cc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred CCChhHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccccccccccccCCCCCCh-hHHHHHHHhh
Q 026027 165 LTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRE-NYVNELIRRM 243 (244)
Q Consensus 165 ltdn~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~~~~~~~gG~~G~rg-~~In~Li~rM 243 (244)
||||++|| ++||+|+|||||||+++|++|+++ +|||||+||||++||++++++|++||++|||| ++||+||++|
T Consensus 79 ltdn~iie----~~gi~ciedlihei~~~g~~f~~~-~fl~pF~L~~P~~G~~~~~~~~~egG~~G~r~~~~In~Li~rM 153 (154)
T 1vq8_W 79 VDDEWVAE----HTDYDDISGLAFALLSEETTLREQ-GLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153 (154)
T ss_dssp CSHHHHHH----HSSSSSHHHHHHHHHTTSCCTGGG-TBCSCEECCCCTTCCSCSSSBGGGTCSBEECCHHHHHHHHHHT
T ss_pred CCchhhcc----ccccccHHHHHHHHHhCCcchhhc-CCcCceecCCccccccccccccccCCccccccHHHHHHHHHHh
Confidence 99999999 678999999999999999999999 99999999999999998999999999999999 9999999999
Q ss_pred C
Q 026027 244 N 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 154 ~ 154 (154)
T 1vq8_W 154 R 154 (154)
T ss_dssp C
T ss_pred C
Confidence 7
No 6
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.4e-62 Score=406.23 Aligned_cols=151 Identities=32% Similarity=0.546 Sum_probs=145.9
Q ss_pred EEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCccccC
Q 026027 86 LFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIAL 165 (244)
Q Consensus 86 ~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~l 165 (244)
++|+|+||.+|++|++++||++|||+|+|++||+++||+++|||++|+|||+|||||++||++||||||+ ++|+ +||
T Consensus 4 ~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~--~~~~-~~l 80 (155)
T 3j21_Y 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGR--LIGN-KPV 80 (155)
T ss_dssp EEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCC--SSSS-CCC
T ss_pred EEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhcc--ccCC-CcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 5555 599
Q ss_pred CChhHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccc-cccccccccCCCCCChhHHHHHHHhhC
Q 026027 166 TDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLK-KKRNHYVEGGDAGNRENYVNELIRRMN 244 (244)
Q Consensus 166 tdn~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~-~~~~~~~~gG~~G~rg~~In~Li~rM~ 244 (244)
|||+|+| ++|| |+|||||||+++|++|+++++|+|||+||||++||+ ++++||.+||++||||+.||+||++|+
T Consensus 81 tdn~l~e----k~gi-ciEdli~eI~~~g~~fk~~~~fl~pFkL~~P~~G~k~~~~~~~~egG~~G~r~~~In~Li~rM~ 155 (155)
T 3j21_Y 81 TDEYVKE----KLGM-TIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML 155 (155)
T ss_dssp CHHHHHH----HSSS-CHHHHHHHHHHTSSCTTTSCSSCSEEECCCCTTCSSSCSSSBTTTTSSBEECCTTHHHHHHHTC
T ss_pred CHHHHHH----HhCC-CHHHHHHHHHhCCcCHHHhhCcCCceecCCccchhhcccccccccCCCCcCcHHHHHHHHHHcC
Confidence 9999999 5789 999999999999999999999999999999999998 588999999999999999999999996
No 7
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=100.00 E-value=4.3e-62 Score=425.73 Aligned_cols=168 Identities=57% Similarity=1.084 Sum_probs=164.9
Q ss_pred CccCCCCeeEEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhccc
Q 026027 77 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYG 156 (244)
Q Consensus 77 ~~~~~e~kl~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~ 156 (244)
-.+|.+++++||+|++|+.++++.++++|++|+|+++|++||++.|+++.+||++|+|||+|||||++||++||+|||++
T Consensus 44 ~Svp~e~kL~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~ 123 (213)
T 3jyw_F 44 AAAAAAAGLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFG 123 (213)
T ss_dssp HTCSCCCCCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCC
T ss_pred hhCcccCccceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcc
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCChhHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccc--cccccccccCCCCCChh
Q 026027 157 KLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLK--KKRNHYVEGGDAGNREN 234 (244)
Q Consensus 157 k~~~~~~~ltdn~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~--~~~~~~~~gG~~G~rg~ 234 (244)
+++++++|||||++||++||++||+|+|||+|||+++|++|+++++|||||+||||++||+ ++++||.+||++|||||
T Consensus 124 k~~~~~i~ltdn~iie~~lg~~gi~ciedli~ei~~~g~~f~~~~~fl~pF~L~~P~~G~~~~~~~~~~~egG~~G~r~~ 203 (213)
T 3jyw_F 124 KINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREE 203 (213)
T ss_dssp SSSCCSSCSSSHHHHSSSSCCSCCCCHHHHHHHHTTTCSSCTTTTTSCSSBCCCCCTTCCSSSSSSCCTTTSCSSSEESS
T ss_pred cCCCCeecCCcchHHHHhccCCCceeHHHHHHHHHhCCcCHHHhhCCCCCEECCCCCCCccCCCeecccccCCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred HHHHHHHhhC
Q 026027 235 YVNELIRRMN 244 (244)
Q Consensus 235 ~In~Li~rM~ 244 (244)
.||+||+||+
T Consensus 204 ~In~Li~~m~ 213 (213)
T 3jyw_F 204 FINKLVKSMN 213 (213)
T ss_dssp THHHHHTTCC
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 8
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=99.73 E-value=5.2e-18 Score=120.08 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=55.7
Q ss_pred EEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCC
Q 026027 86 LFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPN 142 (244)
Q Consensus 86 ~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~ 142 (244)
+.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+||++|
T Consensus 4 ~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~veev~ 60 (60)
T 1bxy_A 4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60 (60)
T ss_dssp EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred EEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHhHHHHhHheEEEEecC
Confidence 789999999999999999999999999999999999999999999999999999975
No 9
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Probab=99.68 E-value=5.5e-17 Score=114.09 Aligned_cols=57 Identities=28% Similarity=0.156 Sum_probs=54.8
Q ss_pred eeEEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEec
Q 026027 84 KLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGY 140 (244)
Q Consensus 84 kl~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~ 140 (244)
+.+.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+|+|
T Consensus 2 ~~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hLV~vee 58 (58)
T 3r8s_Z 2 KTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 58 (58)
T ss_dssp CEEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHHHHHHTGGGEEEEC
T ss_pred CeEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHHHHHHHHheEEEeC
Confidence 357899999999999999999999999999999999999999999999999999985
No 10
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*
Probab=99.68 E-value=2.2e-17 Score=114.93 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=53.1
Q ss_pred EEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEec
Q 026027 86 LFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGY 140 (244)
Q Consensus 86 ~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~ 140 (244)
+.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+|++
T Consensus 1 ~kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~vee 55 (55)
T 2zjr_W 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred CEEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHHHHHHhHhhEEEeC
Confidence 3589999999999999999999999999999999999999999999999999986
No 11
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=38.80 E-value=29 Score=26.78 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=24.9
Q ss_pred ecCCHHHHHHHHHhhcccccCCccccCCChhH---HHhhc---ccCCcccHHHHHHHHHh
Q 026027 139 GYPNLKSVRELIYKRGYGKLDKQRIALTDNSI---IEKAL---GKFGIICMEDLIHEIMT 192 (244)
Q Consensus 139 G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn~l---iee~l---g~~gi~ciEdlv~eI~~ 192 (244)
|+++.+-++.++..-|. ++|+..+ +.+.- ..-|-|+.+++++.+.+
T Consensus 100 G~I~~~el~~~l~~~g~--------~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~ 151 (159)
T 3i5g_C 100 GLISSAEIRNVLKMLGE--------RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp SEECHHHHHHHHHHSSS--------CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCC--------CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHC
Confidence 56666666666655443 4555443 22211 12356777777776654
No 12
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=37.27 E-value=37 Score=24.22 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=30.0
Q ss_pred ecCCHHHHHHHHHhhcccccCCccccCCChhHHHhhcccCCcccHHH
Q 026027 139 GYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMED 185 (244)
Q Consensus 139 G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn~liee~lg~~gi~ciEd 185 (244)
|..+.++|+.+|..-= .-.+...||||..|.+ .|...||.+-.-
T Consensus 14 ~~~S~~~Ik~~Ik~lI--~~Ed~~kPlSD~~I~~-~L~~~Gi~IaRR 57 (76)
T 2ahq_A 14 EGLTQGELMKLIKEIV--ENEDKRKPYSDQEIAN-ILKEKGFKVARR 57 (76)
T ss_dssp CSCCHHHHHHHHHHHG--GGCCSSSCCCHHHHHH-HHTTTSSCCCHH
T ss_pred ccccHHHHHHHHHHHH--HhcCCCCCCCHHHHHH-HHHHcCCCccHH
Confidence 4568888888876522 2334467999999955 677778866543
No 13
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=31.52 E-value=20 Score=27.36 Aligned_cols=16 Identities=6% Similarity=0.316 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHhcCC
Q 026027 180 IICMEDLIHEIMTVGP 195 (244)
Q Consensus 180 i~ciEdlv~eI~~~g~ 195 (244)
..|+..+.+++++.++
T Consensus 45 ~~~l~~iL~eVA~~~~ 60 (104)
T 2doa_A 45 KDALDGLLQQVANMSA 60 (104)
T ss_dssp HHHHHHHHHHSSEECS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3478888888887764
No 14
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.26 E-value=67 Score=24.43 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=9.3
Q ss_pred CcccHHHHHHHHHhcCCC
Q 026027 179 GIICMEDLIHEIMTVGPH 196 (244)
Q Consensus 179 gi~ciEdlv~eI~~~g~~ 196 (244)
|.|+.++|-+.+.+.|.+
T Consensus 100 G~I~~~el~~~l~~~g~~ 117 (153)
T 3i5g_B 100 GFIPEDYLKDLLENMGDN 117 (153)
T ss_dssp SCCCHHHHHHHHHSSSSC
T ss_pred CeEeHHHHHHHHHHcCCc
Confidence 555555555555555544
No 15
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=23.21 E-value=1.5e+02 Score=22.92 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccC---ceEEecCCHH
Q 026027 99 PKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEP---YVTYGYPNLK 144 (244)
Q Consensus 99 ~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~---~V~~G~p~~~ 144 (244)
.-.+.+++.||+. ...++++-|++.-..|++.+-- +|+||.-+.+
T Consensus 164 ~~~~~~~~~lg~~-~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~ 211 (237)
T 4ex6_A 164 DMALHVARGLGIP-PERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPD 211 (237)
T ss_dssp HHHHHHHHHHTCC-GGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHH
T ss_pred HHHHHHHHHcCCC-HHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCCHH
Confidence 4456677777763 4667777888777777777776 6666654433
No 16
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=23.11 E-value=16 Score=21.26 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=13.9
Q ss_pred ChhHHHhhcccCCcccHHHHHHH
Q 026027 167 DNSIIEKALGKFGIICMEDLIHE 189 (244)
Q Consensus 167 dn~liee~lg~~gi~ciEdlv~e 189 (244)
|+.-|||.|.+ |+|.++.|
T Consensus 10 dekqieelldn----cietfvae 28 (31)
T 4h62_V 10 DEKQIEELLDN----CIETFVAE 28 (31)
T ss_dssp CHHHHHHHHHH----HHHHHHTC
T ss_pred cHHHHHHHHHH----HHHHHHhh
Confidence 66777888864 89888753
No 17
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=22.02 E-value=1.4e+02 Score=23.30 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCcccEEEEecCHhhHHHHhhccC---ceEEecCCHH
Q 026027 101 TKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEP---YVTYGYPNLK 144 (244)
Q Consensus 101 ~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~---~V~~G~p~~~ 144 (244)
...+++.||+.....++++-|++.-..|.+.+-- +|.||.-+.+
T Consensus 172 ~~~~~~~~g~~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~ 218 (240)
T 3sd7_A 172 IQYVLDLCNVKDKDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFE 218 (240)
T ss_dssp HHHHHHHHTCCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSSCCHH
T ss_pred HHHHHHHcCCCCCCcEEEECCCHHHHHHHHHCCCCEEEEeCCCCCHH
Confidence 3456666676556667777777777777777665 5555554444
No 18
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=20.69 E-value=2.2e+02 Score=19.83 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=8.9
Q ss_pred CCchHHHHhhhhHHH
Q 026027 9 PVPESVLKKQKRNEE 23 (244)
Q Consensus 9 ~vpE~~LKKrk~~~~ 23 (244)
.-||+|-+=|..+..
T Consensus 6 ~EpE~Ir~WRE~~~~ 20 (70)
T 1xi4_J 6 SEPESIRKWREEQTE 20 (70)
T ss_pred cCcHHHHHHHHHHHH
Confidence 478887655544433
Done!