BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026028
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 103/163 (63%), Positives = 132/163 (80%), Gaps = 1/163 (0%)
Query: 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140
T+ +S++DFTVKD DV LS FKGKVLLIVNVAS+CG+T SNY+E++ LYEKYK Q
Sbjct: 5 TSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ 64
Query: 141 GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG 200
G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIFDK+DVNG N +P+Y+FLK
Sbjct: 65 GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKW 124
Query: 201 GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242
G GD ++WNF KFLV+K+G+V++RY PTTSP +E DI++L+
Sbjct: 125 GIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL 167
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
KS+Y+F V DGK LS+ KG LLI NVASRCG T Y + LY KYK QGF +L
Sbjct: 3 KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVL 62
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG- 204
AFPCNQF GQEPG+ E+KEFACTRFKA+FPI K+DVNG P+Y+F+K++ G G
Sbjct: 63 AFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGT 122
Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEDIQKLVV 243
+KWNF FL+D++G +ER+ P S +EDI+K ++
Sbjct: 123 KAIKWNFTSFLIDRHGVPVERFSPGAS---VEDIEKKLL 158
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 115/168 (68%), Gaps = 6/168 (3%)
Query: 77 GVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK 136
G H +AA+ S++DF V D D K L + KG LLI NVAS+CG T Y + LY K
Sbjct: 19 GSHMSAAS--SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNK 76
Query: 137 YKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196
YK+QGF +LAFPCNQFGGQEPG+ EIKEF CT+FKAEFPI K++VNG N P+Y+++K
Sbjct: 77 YKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMK 136
Query: 197 SSAGGFL-GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEDIQKLVV 243
+ G L +KWNF FL+D++G +ER+ P S ++DI+K ++
Sbjct: 137 KTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGAS---VKDIEKKLI 181
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S+Y+FTVKDI+G DV L K++G V LIVNVA + G T NY +L ++ + +G ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
FPCNQFGGQEP + EIK+F ++ +F +F K+ VNG + +Y+FLKS G L +
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242
+KWNF KFLVD+ G+ ++RY PTT+P+ IE DI +L+
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S+Y+FTVKDI+G DV L K++G V LIVNVA + G T NY +L ++ + +G ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
FPCNQFGGQEP + EIK+F ++ +F +F K+ VNG + +Y+FLKS G L +
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242
+KWNF KFLVD+ G+ ++RY PTT+P+ IE DI +L+
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S++DF V D D K L + KG LLI NVAS+CG T Y + LY KYK+QGF +LA
Sbjct: 25 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 84
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-D 205
FP NQFGGQEPG+ EIKEF CT+FKAEFPI K++VNG N P+Y+++K + G L
Sbjct: 85 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 144
Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIED 237
+KWNF FL+D++G +ER+ P S IE+
Sbjct: 145 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEE 176
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S++DF V D D K L + KG LLI NVAS+CG T Y + LY KYK+QGF +LA
Sbjct: 5 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 64
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-D 205
FP NQFGGQEPG+ EIKEF CT+FKAEFPI K++VNG N P+Y+++K + G L
Sbjct: 65 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 124
Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIED 237
+KWNF FL+D++G +ER+ P S IE+
Sbjct: 125 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEE 156
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 103/158 (65%), Gaps = 3/158 (1%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
Y D G+ P + KGKV+LIVNVAS+CG TP Y EL LY++YK +GF I+
Sbjct: 11 EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIG 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-D 205
FPCNQFG QEPGS+ EI +F + FPI K+DVNG N PVY+FLKS G LG
Sbjct: 70 FPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLR 129
Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQI-EDIQKLV 242
+KWNFEKFLVDK GKV ERY T P + E I++L+
Sbjct: 130 GIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 105/153 (68%), Gaps = 3/153 (1%)
Query: 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
+S+++F+ KDIDG V L K++G V ++ NVAS+CG T NY++L L+ +Y G IL
Sbjct: 25 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 84
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS--AGGFL 203
AFPCNQFG QEPGSN EIKEFA + +F +F K+ VNG + P+++++K G L
Sbjct: 85 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 143
Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236
G+ +KWNF KFL+DKNG V++RY P P IE
Sbjct: 144 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 176
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 3/153 (1%)
Query: 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
+S+++F+ KDIDG V L K++G V ++ NVAS+ G T NY++L L+ +Y G IL
Sbjct: 27 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRIL 86
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS--AGGFL 203
AFPCNQFG QEPGSN EIKEFA + +F +F K+ VNG + P+++++K G L
Sbjct: 87 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 145
Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236
G+ +KWNF KFL+DKNG V++RY P P IE
Sbjct: 146 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 178
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 7/160 (4%)
Query: 85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
E+ YDF +I GK V L K++G V L+VNVAS CG T +Y L L F +
Sbjct: 26 EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNV 85
Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204
LAFPCNQFG QEP SN EI+ FA + FP+F K+ V G P +++L ++ G
Sbjct: 86 LAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----G 141
Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEDIQKLVVA 244
WNF K+LV +GKV+ + PT S +E+++ + A
Sbjct: 142 KEPTWNFWKYLVAPDGKVVGAWDPTVS---VEEVRPQITA 178
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 7/158 (4%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S Y F VKD G+ V L K+KGKV L+VNVAS C LT NY L L++++ F +LA
Sbjct: 26 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
FPCNQFG EP + E++ FA + FPIF K+ + G P ++FL S+
Sbjct: 86 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 141
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQI--EDIQKLV 242
+WNF K+LV+ G+V++ + P P ++ DI LV
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRP-EEPIEVIRPDIAALV 178
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 7/158 (4%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S Y F VKD G+ V L K+KGKV L+VNVAS C LT NY L L++++ F +LA
Sbjct: 17 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
FPCNQFG EP + E++ FA + FPIF K+ + G P ++FL S+
Sbjct: 77 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 132
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQI--EDIQKLV 242
+WNF K+LV+ G+V++ + P P ++ DI LV
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRP-EEPIEVIRPDIAALV 169
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 92/183 (50%), Gaps = 26/183 (14%)
Query: 86 KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
+S+Y F+ + + G + V L +GKVLLI NVAS G T +Y++++ L + +G +
Sbjct: 24 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 83
Query: 145 LAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS- 198
L FPCNQFG QE N EI R F+ F +F+K +VNG P++ FL+ +
Sbjct: 84 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 143
Query: 199 ------AGGFLGD------------LVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQ 239
A + D V WNFEKFLV +G + RY IE DI+
Sbjct: 144 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 203
Query: 240 KLV 242
L+
Sbjct: 204 ALL 206
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 86/166 (51%), Gaps = 22/166 (13%)
Query: 87 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
++Y++ IDG++ +P ++ GK +L VNVAS GLT Y EL+ L E+ G IL
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 146 AFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA- 199
FPCNQFG QEPG N EI R F F +F+K DVNG Y FLK+S
Sbjct: 75 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 200 --GGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTS 231
LG ++WNFEKFLV +G I R+ T+
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTT 180
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 77 GVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK 136
++ + KS YD + ++DG+ V + F+G+ +LI NVAS CG T ++++L+ L +
Sbjct: 17 NLYFQSMIAKSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCR 76
Query: 137 YKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPV 191
+ + +L FPCNQFG QE N EI R ++ F + K +VNG N PV
Sbjct: 77 FPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPV 135
Query: 192 YQFLKSSAGGFLGD-------------------LVKWNFEKFLVDKNGKVIERYPPTTSP 232
+ +LK D V WNFEKFL+ G+ RY T
Sbjct: 136 FAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPT 195
Query: 233 FQIE-DIQKLV 242
IE DI++L+
Sbjct: 196 INIEPDIKRLL 206
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 30/185 (16%)
Query: 86 KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
+++Y F+ + + G + LS +GKVLLI NVAS G T +Y++++ L + +G +
Sbjct: 10 RTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVV 69
Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLK- 196
L FPCNQFG QE N EI C + F+ F +F+K +VNG P++ FL+
Sbjct: 70 LGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLRE 127
Query: 197 ------SSAGGFLGD------------LVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-D 237
A + D V WNFEKFLV +G + RY IE D
Sbjct: 128 VLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPD 187
Query: 238 IQKLV 242
I+ L+
Sbjct: 188 IETLL 192
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 22/161 (13%)
Query: 87 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
++YD+ ++ + V ++ GK +L VNVA+ CGLT + Y EL+ L E+ K G +L
Sbjct: 34 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVL 92
Query: 146 AFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA- 199
FPCNQFG QEPG N EI R F F +F+K DVNG V+ FLK S
Sbjct: 93 GFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCP 152
Query: 200 --GGFLGDL------------VKWNFEKFLVDKNGKVIERY 226
LG ++WNFEKFLV +G + R+
Sbjct: 153 HPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRW 193
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
E S+ D +KD+ G L+ KGKV+LI ++ ++ L LY KY +QGFEI
Sbjct: 12 EASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEI 71
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150
F+ DI+GK V L+ KGK + I A+ CG L L EKY + ++ C+
Sbjct: 13 FSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCD 72
Query: 151 Q 151
+
Sbjct: 73 K 73
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 5 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVA 61
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVA 64
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147
L D +D DGK LS F+GK LL+ A+ C L L K FE++A
Sbjct: 40 LPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAI 99
Query: 148 PCNQFGGQEPGSNPEIKEFACTRF 171
+ ++P + +KE TR
Sbjct: 100 NIDTRDPEKPKTF--LKEANLTRL 121
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + ++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVA 64
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL 122
DFT+ DGK V LS +GKV+++ AS CG+
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV 47
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
+F ++D +GK + LS KGK + + + + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVEIVAVNV 67
Query: 150 NQ 151
+
Sbjct: 68 GE 69
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|1XZO|A Chain A, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
pdb|1XZO|B Chain B, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
Length = 174
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 19/146 (13%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRC-GLTPSNYSELSHLYEKYKTQGFE--ILAF 147
FT ++ DGK+V L KG+V L + + C + P + ++ L +K K + + I++F
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
Query: 148 PCNQFGGQEPGSNPEIKEFACTRFKAEFPI-FDKVD-VNGPNTAPVYQFLKSSAGGFLG- 204
+ E ++K+FA A +P+ FD D + G + + + +F S +
Sbjct: 76 SVD----PENDKPKQLKKFA-----ANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKK 126
Query: 205 ----DLVKWNFEKFLVDKNGKVIERY 226
D V +LV +GKV++ Y
Sbjct: 127 PEGEDQVIHQSSFYLVGPDGKVLKDY 152
>pdb|1ON4|A Chain A, Solution Structure Of Soluble Domain Of Sco1 From Bacillus
Subtilis
Length = 174
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRC-GLTPSNYSELSHLYEKYKTQGFEILAFPC 149
FT ++ DGK+V L KG+V L + + C + P + ++ L +K K + ++
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRII-- 73
Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPI-FDKVD-VNGPNTAPVYQFLKSSAGGFLG--- 204
F P+ +F A +P+ FD D + G + + + +F S +
Sbjct: 74 -SFSVDPENDKPK----QLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPE 128
Query: 205 --DLVKWNFEKFLVDKNGKVIERY 226
D V +LV +GKV++ Y
Sbjct: 129 GEDQVIHQSSFYLVGPDGKVLKDY 152
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160
V LS G V+ + AS CG ++ + KYK +GF+++A N
Sbjct: 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAV------------N 68
Query: 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG 220
+ K +F A+ P V + P +K FL+D+NG
Sbjct: 69 LDAKTGDAXKFLAQVPAEFTVAFDPKGQTPRLYGVKGXP------------TSFLIDRNG 116
Query: 221 KVIERY 226
KV+ ++
Sbjct: 117 KVLLQH 122
>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
Length = 426
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 68 GFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNY 127
G + +R + A +A + +L+D K ++PL + G V C T +
Sbjct: 95 GAYWRRGPVTMSAISAVDMALWDIKAK---AANMPLYQLLGGASR-TGVMVYCHTTGHSI 150
Query: 128 SELSHLYEKYKTQGFEILAFPC 149
E+ Y K++ QGF+ + C
Sbjct: 151 DEVLDDYAKHRDQGFKAIRVQC 172
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYK 138
+ GKD P + +VLL+VN A CG T N + +H ++K K
Sbjct: 2 VGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIK 47
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 95 DIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151
D+ G V L+ FKGK +L+ + C L Y +K +GF I ++
Sbjct: 16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR 72
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
F++ D+ GK V + +GKV LI C S ++ YK + F++LA
Sbjct: 11 FSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLA 66
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL 122
DF + +DGK LS +KGK + + AS C +
Sbjct: 4 DFELMGVDGKTYRLSDYKGKKVYLKFWASWCSI 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,340,887
Number of Sequences: 62578
Number of extensions: 301613
Number of successful extensions: 637
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 47
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)