Query 026028
Match_columns 244
No_of_seqs 381 out of 1616
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 2.8E-44 6.1E-49 294.0 21.5 232 5-244 3-236 (236)
2 PLN02412 probable glutathione 100.0 3.1E-33 6.7E-38 219.6 17.8 160 85-244 6-166 (167)
3 PRK10606 btuE putative glutath 100.0 1.3E-32 2.8E-37 217.7 17.4 158 86-244 3-183 (183)
4 PTZ00056 glutathione peroxidas 100.0 1.4E-32 3.1E-37 221.4 17.6 163 81-244 12-180 (199)
5 COG0386 BtuE Glutathione perox 100.0 6E-32 1.3E-36 201.2 15.5 158 86-244 3-162 (162)
6 cd00340 GSH_Peroxidase Glutath 100.0 5.1E-31 1.1E-35 204.2 16.2 149 87-236 1-149 (152)
7 PTZ00256 glutathione peroxidas 100.0 1.3E-30 2.8E-35 207.8 17.8 161 84-244 16-183 (183)
8 KOG1651 Glutathione peroxidase 100.0 1.5E-30 3.3E-35 196.0 14.6 163 82-244 8-171 (171)
9 TIGR02540 gpx7 putative glutat 100.0 4.9E-30 1.1E-34 198.9 16.3 151 88-242 2-153 (153)
10 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.2E-27 2.6E-32 182.4 14.3 141 81-236 3-146 (157)
11 PF08534 Redoxin: Redoxin; In 99.9 1.2E-26 2.6E-31 178.3 11.1 143 83-242 1-146 (146)
12 PRK09437 bcp thioredoxin-depen 99.9 2.1E-25 4.5E-30 173.0 14.6 149 81-243 3-153 (154)
13 PRK15412 thiol:disulfide inter 99.9 7.4E-26 1.6E-30 180.7 11.9 135 81-243 38-177 (185)
14 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.1E-25 2.5E-30 167.8 11.7 123 84-225 1-124 (124)
15 cd03018 PRX_AhpE_like Peroxire 99.9 4.2E-25 9.2E-30 170.1 12.6 144 83-243 2-148 (149)
16 PRK00522 tpx lipid hydroperoxi 99.9 1.3E-24 2.9E-29 170.7 15.1 144 82-242 18-165 (167)
17 cd03017 PRX_BCP Peroxiredoxin 99.9 6E-25 1.3E-29 167.5 11.9 135 86-236 1-136 (140)
18 cd02969 PRX_like1 Peroxiredoxi 99.9 2E-24 4.4E-29 170.3 13.6 142 85-243 1-153 (171)
19 PRK03147 thiol-disulfide oxido 99.9 3.2E-24 7E-29 169.2 14.1 138 80-241 33-171 (173)
20 TIGR00385 dsbE periplasmic pro 99.9 1.7E-24 3.7E-29 171.1 12.5 137 81-244 33-173 (173)
21 TIGR03137 AhpC peroxiredoxin. 99.9 1.9E-24 4E-29 172.8 12.2 130 83-230 3-139 (187)
22 cd03014 PRX_Atyp2cys Peroxired 99.9 2.4E-24 5.2E-29 164.9 12.4 127 84-230 2-130 (143)
23 cd03015 PRX_Typ2cys Peroxiredo 99.9 4E-24 8.7E-29 169.0 13.3 129 84-230 1-140 (173)
24 PRK13190 putative peroxiredoxi 99.9 6.2E-24 1.3E-28 171.7 13.5 141 82-241 2-153 (202)
25 cd03010 TlpA_like_DsbE TlpA-li 99.9 2.7E-24 5.8E-29 161.4 9.9 124 86-235 1-126 (127)
26 PRK10382 alkyl hydroperoxide r 99.9 8.3E-24 1.8E-28 168.4 12.4 130 82-229 2-138 (187)
27 cd02968 SCO SCO (an acronym fo 99.9 1.1E-23 2.5E-28 160.8 10.3 137 87-228 1-142 (142)
28 PRK13599 putative peroxiredoxi 99.9 2.5E-23 5.5E-28 169.2 12.8 128 83-227 3-136 (215)
29 cd03012 TlpA_like_DipZ_like Tl 99.9 2.1E-23 4.5E-28 156.5 10.2 113 98-229 13-125 (126)
30 PRK13191 putative peroxiredoxi 99.9 4E-23 8.6E-28 168.1 12.6 131 82-229 7-143 (215)
31 cd03016 PRX_1cys Peroxiredoxin 99.9 4.5E-23 9.8E-28 166.9 12.2 129 84-230 1-137 (203)
32 TIGR02661 MauD methylamine deh 99.9 1.1E-22 2.4E-27 162.9 13.7 129 82-240 46-177 (189)
33 PRK15000 peroxidase; Provision 99.9 1.1E-22 2.4E-27 163.9 13.0 132 83-232 3-147 (200)
34 cd02967 mauD Methylamine utili 99.9 1.8E-22 3.9E-27 148.5 11.8 109 89-225 1-111 (114)
35 PRK13189 peroxiredoxin; Provis 99.9 2.2E-22 4.8E-27 164.6 13.1 129 82-228 9-144 (222)
36 cd02971 PRX_family Peroxiredox 99.9 3.4E-22 7.4E-27 152.2 12.4 129 87-231 1-131 (140)
37 PTZ00137 2-Cys peroxiredoxin; 99.9 2.2E-22 4.7E-27 167.0 12.1 127 82-227 68-205 (261)
38 PTZ00253 tryparedoxin peroxida 99.9 2.3E-22 4.9E-27 162.4 12.0 131 82-230 6-147 (199)
39 cd03008 TryX_like_RdCVF Trypar 99.9 1.3E-22 2.8E-27 154.7 8.7 106 99-225 16-128 (146)
40 PRK14018 trifunctional thiored 99.9 5.7E-22 1.2E-26 178.3 13.7 137 82-239 32-170 (521)
41 cd02970 PRX_like2 Peroxiredoxi 99.9 4.7E-22 1E-26 152.8 10.7 129 87-228 1-148 (149)
42 PLN02919 haloacid dehalogenase 99.9 8E-22 1.7E-26 192.3 13.3 144 81-243 390-537 (1057)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 1.3E-21 2.8E-26 145.8 11.0 119 89-236 1-119 (123)
44 COG0450 AhpC Peroxiredoxin [Po 99.9 3E-21 6.4E-26 150.4 11.7 128 82-227 3-141 (194)
45 cd03013 PRX5_like Peroxiredoxi 99.9 3.4E-21 7.5E-26 149.4 10.8 133 84-231 1-142 (155)
46 cd02966 TlpA_like_family TlpA- 99.9 7E-21 1.5E-25 138.8 11.5 116 90-228 1-116 (116)
47 TIGR01626 ytfJ_HI0045 conserve 99.8 9.6E-21 2.1E-25 149.3 10.7 133 80-236 21-173 (184)
48 PF00255 GSHPx: Glutathione pe 99.8 5E-20 1.1E-24 132.8 11.9 108 88-196 1-108 (108)
49 PRK13728 conjugal transfer pro 99.8 1.4E-20 3.1E-25 147.5 9.7 120 84-243 51-172 (181)
50 cd02964 TryX_like_family Trypa 99.8 7.6E-21 1.7E-25 143.7 7.6 109 97-227 5-117 (132)
51 cd03009 TryX_like_TryX_NRX Try 99.8 1.7E-20 3.8E-25 141.4 6.7 111 93-226 3-116 (131)
52 PF02630 SCO1-SenC: SCO1/SenC; 99.8 1.1E-19 2.3E-24 143.7 8.8 140 84-228 28-173 (174)
53 COG1999 Uncharacterized protei 99.8 1.4E-18 2.9E-23 140.6 13.3 150 90-244 49-206 (207)
54 PF13905 Thioredoxin_8: Thiore 99.8 3.8E-19 8.3E-24 126.5 6.0 94 108-222 1-95 (95)
55 KOG0855 Alkyl hydroperoxide re 99.8 4.1E-18 9E-23 128.5 11.1 143 81-241 62-208 (211)
56 TIGR02738 TrbB type-F conjugat 99.7 8.7E-18 1.9E-22 129.5 8.3 108 98-242 44-153 (153)
57 cd02950 TxlA TRX-like protein 99.7 3.9E-17 8.4E-22 124.8 8.0 107 92-243 2-111 (142)
58 KOG0852 Alkyl hydroperoxide re 99.7 6.8E-16 1.5E-20 117.5 10.7 128 83-228 5-142 (196)
59 KOG2792 Putative cytochrome C 99.6 2.6E-15 5.7E-20 121.2 10.0 149 89-242 120-275 (280)
60 cd02985 TRX_CDSP32 TRX family, 99.6 5.6E-15 1.2E-19 106.7 10.1 88 105-239 12-100 (103)
61 KOG0910 Thioredoxin-like prote 99.6 1.4E-14 3E-19 108.9 8.9 90 107-244 60-150 (150)
62 KOG2501 Thioredoxin, nucleored 99.5 1.4E-14 3E-19 109.8 7.5 114 91-225 15-131 (157)
63 cd02948 TRX_NDPK TRX domain, T 99.5 2.5E-13 5.4E-18 97.9 8.9 85 107-240 16-101 (102)
64 cd02963 TRX_DnaJ TRX domain, D 99.5 2.7E-13 5.9E-18 99.2 9.1 88 106-240 22-110 (111)
65 KOG0854 Alkyl hydroperoxide re 99.5 8.7E-13 1.9E-17 100.7 11.8 133 81-226 5-147 (224)
66 cd02951 SoxW SoxW family; SoxW 99.5 3.9E-13 8.5E-18 100.4 9.9 103 107-243 12-120 (125)
67 cd02953 DsbDgamma DsbD gamma f 99.5 3E-13 6.5E-18 97.7 8.5 89 107-238 10-103 (104)
68 TIGR02740 TraF-like TraF-like 99.5 1.6E-13 3.5E-18 115.5 7.5 105 99-241 157-263 (271)
69 cd02999 PDI_a_ERp44_like PDIa 99.4 3E-13 6.4E-18 97.2 6.8 84 104-236 14-97 (100)
70 PHA02278 thioredoxin-like prot 99.4 7.8E-13 1.7E-17 95.3 8.4 89 107-239 13-101 (103)
71 cd02956 ybbN ybbN protein fami 99.4 1.1E-12 2.4E-17 93.2 9.1 82 107-236 11-92 (96)
72 COG2077 Tpx Peroxiredoxin [Pos 99.4 2.6E-12 5.6E-17 96.0 10.5 126 81-225 17-146 (158)
73 cd02954 DIM1 Dim1 family; Dim1 99.4 1.1E-12 2.3E-17 95.6 7.2 80 107-234 13-92 (114)
74 PRK09381 trxA thioredoxin; Pro 99.4 2.9E-12 6.2E-17 93.3 9.3 89 107-243 20-109 (109)
75 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 2.5E-12 5.4E-17 92.4 7.2 93 96-236 6-98 (101)
76 PRK10996 thioredoxin 2; Provis 99.4 3E-12 6.5E-17 97.5 7.9 88 107-242 51-139 (139)
77 PF13098 Thioredoxin_2: Thiore 99.3 5E-13 1.1E-17 97.7 3.0 103 107-236 4-109 (112)
78 COG3118 Thioredoxin domain-con 99.3 5.3E-12 1.1E-16 104.8 8.4 89 107-243 42-131 (304)
79 cd02994 PDI_a_TMX PDIa family, 99.3 9E-12 2E-16 89.4 8.2 84 106-238 15-99 (101)
80 KOG0907 Thioredoxin [Posttrans 99.3 1.6E-11 3.5E-16 88.6 8.8 84 107-240 20-104 (106)
81 PLN00410 U5 snRNP protein, DIM 99.3 2.2E-11 4.7E-16 92.2 9.4 90 107-243 22-121 (142)
82 cd02993 PDI_a_APS_reductase PD 99.3 1.3E-11 2.9E-16 89.9 8.0 85 107-235 20-105 (109)
83 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 2.7E-11 5.8E-16 87.4 9.0 83 107-236 18-101 (104)
84 cd03006 PDI_a_EFP1_N PDIa fami 99.3 3.5E-11 7.7E-16 88.1 8.9 83 107-236 28-110 (113)
85 TIGR01126 pdi_dom protein disu 99.3 2.4E-11 5.2E-16 86.9 7.7 88 107-241 12-101 (102)
86 TIGR01295 PedC_BrcD bacterioci 99.2 1E-10 2.2E-15 87.0 10.8 95 107-236 22-117 (122)
87 cd03005 PDI_a_ERp46 PDIa famil 99.2 2E-11 4.3E-16 87.5 6.7 80 110-236 18-99 (102)
88 cd02949 TRX_NTR TRX domain, no 99.2 7.7E-11 1.7E-15 84.0 9.1 82 107-236 12-93 (97)
89 cd03000 PDI_a_TMX3 PDIa family 99.2 6.5E-11 1.4E-15 85.4 8.6 86 107-240 14-102 (104)
90 cd03002 PDI_a_MPD1_like PDI fa 99.2 6.2E-11 1.3E-15 86.1 7.8 85 107-236 17-105 (109)
91 TIGR01068 thioredoxin thioredo 99.2 1.8E-10 3.9E-15 82.0 9.0 86 108-241 14-100 (101)
92 cd02962 TMX2 TMX2 family; comp 99.2 1E-10 2.2E-15 90.0 7.8 81 107-228 46-126 (152)
93 cd02959 ERp19 Endoplasmic reti 99.2 5.6E-11 1.2E-15 87.7 6.1 46 104-150 15-60 (117)
94 PF00085 Thioredoxin: Thioredo 99.2 2E-10 4.3E-15 82.1 8.3 86 107-240 16-102 (103)
95 PTZ00443 Thioredoxin domain-co 99.1 2.5E-10 5.4E-15 93.3 9.4 87 108-242 52-139 (224)
96 PRK00293 dipZ thiol:disulfide 99.1 1.9E-10 4E-15 106.6 9.6 95 104-242 470-570 (571)
97 cd02997 PDI_a_PDIR PDIa family 99.1 2.9E-10 6.2E-15 81.6 7.9 85 107-236 16-101 (104)
98 cd03065 PDI_b_Calsequestrin_N 99.1 6.1E-10 1.3E-14 82.2 9.3 87 109-243 28-120 (120)
99 cd02984 TRX_PICOT TRX domain, 99.1 4.2E-10 9.2E-15 79.9 8.2 80 108-236 14-93 (97)
100 cd02996 PDI_a_ERp44 PDIa famil 99.1 2.7E-10 5.9E-15 82.7 7.0 83 107-236 17-105 (108)
101 cd02998 PDI_a_ERp38 PDIa famil 99.1 4.7E-10 1E-14 80.5 7.2 85 107-236 17-102 (105)
102 cd02986 DLP Dim1 family, Dim1- 99.1 9.8E-10 2.1E-14 79.6 8.6 43 107-150 13-55 (114)
103 cd02965 HyaE HyaE family; HyaE 99.0 1.4E-09 3E-14 78.8 8.7 81 107-235 26-108 (111)
104 cd02961 PDI_a_family Protein D 99.0 1.1E-09 2.4E-14 77.4 7.9 84 107-236 14-98 (101)
105 cd02955 SSP411 TRX domain, SSP 99.0 1.6E-09 3.6E-14 80.5 8.9 45 105-150 12-59 (124)
106 PTZ00051 thioredoxin; Provisio 99.0 1.6E-09 3.4E-14 77.1 8.4 42 107-150 17-58 (98)
107 cd03001 PDI_a_P5 PDIa family, 99.0 2.8E-09 6.1E-14 76.3 9.2 82 108-236 18-99 (103)
108 cd02957 Phd_like Phosducin (Ph 99.0 2.5E-09 5.4E-14 78.4 8.4 41 108-150 24-64 (113)
109 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.9E-09 4.1E-14 77.3 7.1 44 107-150 17-61 (104)
110 cd02989 Phd_like_TxnDC9 Phosdu 99.0 4.5E-09 9.7E-14 77.1 9.0 42 107-150 21-62 (113)
111 cd02975 PfPDO_like_N Pyrococcu 99.0 5.8E-09 1.3E-13 76.5 9.4 86 108-243 22-111 (113)
112 TIGR00424 APS_reduc 5'-adenyly 98.9 4.9E-09 1.1E-13 93.9 9.3 44 107-150 370-413 (463)
113 PTZ00102 disulphide isomerase; 98.9 2.6E-09 5.7E-14 97.1 7.7 104 93-242 359-465 (477)
114 TIGR00411 redox_disulf_1 small 98.9 1.1E-08 2.4E-13 70.1 9.0 39 111-150 2-40 (82)
115 PF00837 T4_deiodinase: Iodoth 98.9 5.7E-09 1.2E-13 84.7 8.4 129 79-226 70-217 (237)
116 cd02952 TRP14_like Human TRX-r 98.9 3.9E-09 8.4E-14 77.8 6.7 44 106-150 19-69 (119)
117 cd02987 Phd_like_Phd Phosducin 98.9 7.2E-09 1.6E-13 81.8 8.4 41 108-150 83-123 (175)
118 cd02958 UAS UAS family; UAS is 98.9 2.9E-08 6.2E-13 72.8 11.0 94 105-243 14-112 (114)
119 cd02947 TRX_family TRX family; 98.8 2.5E-08 5.4E-13 69.1 8.7 79 109-236 11-89 (93)
120 PLN02309 5'-adenylylsulfate re 98.8 2E-08 4.3E-13 90.1 9.8 44 107-150 364-407 (457)
121 cd02992 PDI_a_QSOX PDIa family 98.8 2.3E-08 4.9E-13 73.4 8.5 43 108-150 19-63 (114)
122 cd02988 Phd_like_VIAF Phosduci 98.8 2.1E-08 4.5E-13 80.3 8.5 41 108-150 102-142 (192)
123 cd02982 PDI_b'_family Protein 98.7 7.9E-08 1.7E-12 68.8 8.5 43 107-150 11-53 (103)
124 KOG0908 Thioredoxin-like prote 98.7 7.8E-08 1.7E-12 78.0 8.7 91 102-242 15-106 (288)
125 TIGR01130 ER_PDI_fam protein d 98.7 3.4E-08 7.4E-13 89.2 7.5 89 107-242 17-109 (462)
126 PTZ00102 disulphide isomerase; 98.7 7E-08 1.5E-12 87.8 7.8 88 107-242 48-138 (477)
127 TIGR00412 redox_disulf_2 small 98.6 1.7E-07 3.7E-12 63.6 7.0 35 112-147 2-36 (76)
128 TIGR02187 GlrX_arch Glutaredox 98.6 3E-07 6.5E-12 75.1 9.1 91 105-242 16-111 (215)
129 COG0678 AHP1 Peroxiredoxin [Po 98.6 4.7E-07 1E-11 67.9 8.8 134 82-229 3-148 (165)
130 PF13728 TraF: F plasmid trans 98.5 5.6E-07 1.2E-11 73.4 8.9 97 102-236 114-211 (215)
131 cd02960 AGR Anterior Gradient 98.5 3.4E-07 7.3E-12 68.3 6.9 25 106-130 21-45 (130)
132 PTZ00062 glutaredoxin; Provisi 98.5 6.3E-07 1.4E-11 72.2 8.9 75 109-241 18-93 (204)
133 TIGR02739 TraF type-F conjugat 98.5 1.1E-06 2.4E-11 73.0 9.7 102 103-242 145-248 (256)
134 TIGR01130 ER_PDI_fam protein d 98.4 6E-07 1.3E-11 81.1 7.6 87 107-241 363-453 (462)
135 PRK13703 conjugal pilus assemb 98.4 1.6E-06 3.4E-11 71.8 8.4 102 103-242 138-241 (248)
136 cd03026 AhpF_NTD_C TRX-GRX-lik 98.4 3.7E-06 8.1E-11 58.8 8.8 46 103-150 7-52 (89)
137 smart00594 UAS UAS domain. 98.3 5.2E-06 1.1E-10 61.6 9.0 86 106-236 25-118 (122)
138 KOG0190 Protein disulfide isom 98.3 1.9E-06 4.2E-11 77.3 6.8 85 109-240 43-130 (493)
139 PF13899 Thioredoxin_7: Thiore 98.3 3.4E-06 7.4E-11 58.0 6.3 43 107-150 16-61 (82)
140 COG4232 Thiol:disulfide interc 98.2 2.5E-06 5.3E-11 77.5 6.7 95 105-241 471-567 (569)
141 TIGR02187 GlrX_arch Glutaredox 98.2 8.6E-06 1.9E-10 66.5 9.1 42 107-150 132-173 (215)
142 PF09695 YtfJ_HI0045: Bacteria 98.2 8E-05 1.7E-09 56.9 13.2 144 83-243 2-158 (160)
143 PHA02125 thioredoxin-like prot 98.2 6.8E-06 1.5E-10 55.5 6.5 32 112-150 2-33 (75)
144 PF04592 SelP_N: Selenoprotein 98.2 3.1E-05 6.8E-10 62.7 11.1 118 84-226 6-126 (238)
145 PF14595 Thioredoxin_9: Thiore 98.1 4E-06 8.6E-11 62.8 5.0 81 104-229 37-117 (129)
146 COG0526 TrxA Thiol-disulfide i 98.1 4.4E-06 9.5E-11 59.8 5.1 48 102-150 26-73 (127)
147 cd02973 TRX_GRX_like Thioredox 98.1 3E-05 6.6E-10 50.8 7.8 38 111-150 2-39 (67)
148 cd01659 TRX_superfamily Thiore 98.1 2.5E-05 5.3E-10 49.3 7.1 37 112-150 1-37 (69)
149 KOG0541 Alkyl hydroperoxide re 98.1 5.1E-05 1.1E-09 57.4 9.5 135 79-228 6-153 (171)
150 KOG0190 Protein disulfide isom 97.8 2.3E-05 4.9E-10 70.6 5.2 42 107-148 383-425 (493)
151 PF05988 DUF899: Bacterial pro 97.8 0.00059 1.3E-08 54.7 12.6 124 85-228 43-174 (211)
152 KOG0191 Thioredoxin/protein di 97.8 0.00018 4E-09 63.8 9.9 42 107-149 46-87 (383)
153 PF05176 ATP-synt_10: ATP10 pr 97.7 0.00033 7.2E-09 58.4 9.5 137 83-241 96-248 (252)
154 cd02991 UAS_ETEA UAS family, E 97.6 0.00059 1.3E-08 50.1 8.3 92 105-244 14-115 (116)
155 PF13911 AhpC-TSA_2: AhpC/TSA 97.5 0.001 2.2E-08 48.6 8.6 83 130-227 2-112 (115)
156 cd03023 DsbA_Com1_like DsbA fa 97.4 0.00051 1.1E-08 52.2 6.9 40 107-148 4-43 (154)
157 COG2143 Thioredoxin-related pr 97.4 0.002 4.3E-08 49.1 9.5 101 105-236 39-142 (182)
158 cd03007 PDI_a_ERp29_N PDIa fam 97.4 0.00096 2.1E-08 48.9 7.6 42 107-150 17-60 (116)
159 PRK11509 hydrogenase-1 operon 97.3 0.0031 6.7E-08 47.2 9.3 87 110-243 36-125 (132)
160 TIGR02200 GlrX_actino Glutared 97.1 0.0023 5E-08 42.7 6.7 32 112-150 2-33 (77)
161 KOG0912 Thiol-disulfide isomer 97.1 0.0018 3.9E-08 54.6 6.7 33 108-140 13-45 (375)
162 TIGR02180 GRX_euk Glutaredoxin 97.1 0.0014 3E-08 44.6 5.2 36 112-150 1-36 (84)
163 PRK11657 dsbG disulfide isomer 97.0 0.013 2.7E-07 49.1 11.1 38 107-147 116-153 (251)
164 TIGR02196 GlrX_YruB Glutaredox 96.9 0.0044 9.5E-08 40.6 6.7 32 112-150 2-33 (74)
165 PF03190 Thioredox_DsbH: Prote 96.9 0.003 6.5E-08 49.0 6.4 30 99-128 28-57 (163)
166 PF13192 Thioredoxin_3: Thiore 96.9 0.0033 7.1E-08 42.4 5.6 31 116-147 6-36 (76)
167 PRK10877 protein disulfide iso 96.8 0.0023 4.9E-08 52.9 5.1 40 106-149 105-144 (232)
168 COG4312 Uncharacterized protei 96.8 0.014 2.9E-07 47.0 9.1 84 89-182 53-144 (247)
169 KOG1731 FAD-dependent sulfhydr 96.8 0.0014 3E-08 59.6 3.8 60 109-178 58-120 (606)
170 PF13778 DUF4174: Domain of un 96.7 0.024 5.1E-07 41.7 9.4 104 103-240 3-110 (118)
171 KOG4277 Uncharacterized conser 96.5 0.0038 8.3E-08 52.5 4.6 35 109-143 44-78 (468)
172 KOG0191 Thioredoxin/protein di 96.2 0.017 3.7E-07 51.3 7.4 41 109-149 163-204 (383)
173 PF02114 Phosducin: Phosducin; 96.1 0.014 3.1E-07 49.1 6.1 41 108-150 146-186 (265)
174 cd03020 DsbA_DsbC_DsbG DsbA fa 96.1 0.011 2.3E-07 47.5 5.0 32 101-132 70-101 (197)
175 PRK11200 grxA glutaredoxin 1; 96.1 0.011 2.3E-07 40.7 4.3 37 112-150 3-39 (85)
176 PF06110 DUF953: Eukaryotic pr 95.7 0.019 4.2E-07 42.2 4.3 42 107-149 18-66 (119)
177 PF13462 Thioredoxin_4: Thiore 95.6 0.027 5.8E-07 43.2 5.3 50 100-149 4-54 (162)
178 KOG4498 Uncharacterized conser 95.6 0.11 2.4E-06 40.9 8.6 55 94-148 35-91 (197)
179 PF11009 DUF2847: Protein of u 95.2 0.12 2.6E-06 37.0 7.0 76 107-225 18-93 (105)
180 TIGR03143 AhpF_homolog putativ 95.1 0.1 2.2E-06 48.8 8.3 39 108-148 476-514 (555)
181 cd02976 NrdH NrdH-redoxin (Nrd 94.9 0.14 3.1E-06 33.1 6.4 32 112-150 2-33 (73)
182 KOG3425 Uncharacterized conser 94.9 0.071 1.5E-06 38.9 5.0 47 103-150 19-74 (128)
183 cd03419 GRX_GRXh_1_2_like Glut 94.8 0.078 1.7E-06 35.7 5.1 34 112-150 2-35 (82)
184 PF00462 Glutaredoxin: Glutare 94.8 0.072 1.6E-06 33.8 4.6 32 112-150 1-32 (60)
185 cd03019 DsbA_DsbA DsbA family, 94.5 0.068 1.5E-06 41.6 4.8 42 107-149 14-55 (178)
186 COG1651 DsbG Protein-disulfide 94.4 0.84 1.8E-05 37.6 11.3 51 94-144 70-120 (244)
187 cd02066 GRX_family Glutaredoxi 94.4 0.11 2.5E-06 33.4 4.9 32 112-150 2-33 (72)
188 TIGR02183 GRXA Glutaredoxin, G 94.3 0.14 3E-06 35.2 5.4 37 112-150 2-38 (86)
189 PRK10329 glutaredoxin-like pro 93.9 0.19 4.2E-06 34.2 5.4 32 112-150 3-34 (81)
190 TIGR02190 GlrX-dom Glutaredoxi 93.9 0.19 4.2E-06 33.8 5.3 35 109-150 7-41 (79)
191 cd03418 GRX_GRXb_1_3_like Glut 93.8 0.3 6.5E-06 32.2 6.2 32 112-150 2-33 (75)
192 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 0.53 1.1E-05 42.4 8.8 72 79-151 267-338 (453)
193 PHA03050 glutaredoxin; Provisi 93.5 0.17 3.6E-06 36.6 4.6 35 112-148 15-49 (108)
194 PRK15317 alkyl hydroperoxide r 93.3 0.51 1.1E-05 43.7 8.8 65 81-147 79-153 (517)
195 PRK10954 periplasmic protein d 93.2 0.16 3.4E-06 41.1 4.6 43 107-150 36-81 (207)
196 TIGR02181 GRX_bact Glutaredoxi 93.2 0.28 6.1E-06 32.8 5.2 21 112-132 1-21 (79)
197 KOG0914 Thioredoxin-like prote 92.6 0.1 2.3E-06 42.1 2.7 44 107-150 143-186 (265)
198 COG0695 GrxC Glutaredoxin and 92.5 0.54 1.2E-05 31.9 5.9 43 112-167 3-45 (80)
199 cd03027 GRX_DEP Glutaredoxin ( 92.5 0.69 1.5E-05 30.4 6.4 32 112-150 3-34 (73)
200 TIGR03140 AhpF alkyl hydropero 92.0 1 2.2E-05 41.7 8.9 65 81-147 80-154 (515)
201 TIGR02194 GlrX_NrdH Glutaredox 92.0 0.45 9.8E-06 31.3 4.9 31 113-150 2-32 (72)
202 cd03029 GRX_hybridPRX5 Glutare 91.9 0.52 1.1E-05 30.9 5.1 32 112-150 3-34 (72)
203 cd02983 P5_C P5 family, C-term 91.9 0.92 2E-05 33.8 7.0 90 109-243 21-116 (130)
204 TIGR02189 GlrX-like_plant Glut 91.7 0.46 9.9E-06 33.6 4.9 21 112-132 10-30 (99)
205 PHA03075 glutaredoxin-like pro 90.9 1.4 3E-05 32.0 6.7 30 109-138 2-31 (123)
206 TIGR00365 monothiol glutaredox 90.6 0.95 2.1E-05 31.9 5.7 37 107-150 10-50 (97)
207 cd02972 DsbA_family DsbA famil 90.0 0.44 9.5E-06 32.4 3.5 38 112-150 1-38 (98)
208 KOG3414 Component of the U4/U6 89.9 1.2 2.6E-05 32.9 5.7 56 107-175 22-77 (142)
209 cd03028 GRX_PICOT_like Glutare 89.8 1.5 3.2E-05 30.3 6.1 27 107-133 6-36 (90)
210 KOG0911 Glutaredoxin-related p 88.9 0.23 5.1E-06 40.2 1.6 42 107-150 16-57 (227)
211 PF13848 Thioredoxin_6: Thiore 88.8 1.7 3.7E-05 33.7 6.5 42 108-150 94-136 (184)
212 PRK10638 glutaredoxin 3; Provi 88.8 1.7 3.6E-05 29.4 5.6 32 112-150 4-35 (83)
213 COG1331 Highly conserved prote 88.7 0.92 2E-05 42.8 5.4 23 105-127 40-62 (667)
214 KOG0913 Thiol-disulfide isomer 87.7 0.44 9.6E-06 39.0 2.5 41 107-148 39-79 (248)
215 cd03036 ArsC_like Arsenate Red 86.4 1.3 2.8E-05 32.0 4.2 48 114-173 3-50 (111)
216 cd02977 ArsC_family Arsenate R 85.8 1.6 3.4E-05 31.0 4.3 48 113-172 2-49 (105)
217 PRK01655 spxA transcriptional 85.6 1.4 3.1E-05 32.8 4.1 51 112-174 2-52 (131)
218 TIGR01617 arsC_related transcr 85.4 1.6 3.5E-05 31.7 4.3 50 114-175 3-52 (117)
219 cd03032 ArsC_Spx Arsenate Redu 85.4 2.1 4.5E-05 31.1 4.9 50 113-174 3-52 (115)
220 TIGR03143 AhpF_homolog putativ 85.2 5.6 0.00012 37.2 8.7 42 104-147 362-403 (555)
221 cd03073 PDI_b'_ERp72_ERp57 PDI 84.9 11 0.00023 27.2 8.4 24 124-148 34-58 (111)
222 PRK10824 glutaredoxin-4; Provi 84.3 2.9 6.2E-05 30.5 5.1 27 107-133 13-43 (115)
223 PF05768 DUF836: Glutaredoxin- 83.9 1.2 2.7E-05 30.1 2.9 53 112-179 2-54 (81)
224 COG3054 Predicted transcriptio 83.9 2.1 4.7E-05 32.6 4.3 26 211-236 148-173 (184)
225 cd03035 ArsC_Yffb Arsenate Red 83.8 2.7 5.9E-05 30.0 4.8 48 113-172 2-49 (105)
226 KOG1672 ATP binding protein [P 81.9 3.2 7E-05 33.1 4.8 41 107-149 83-123 (211)
227 PRK12559 transcriptional regul 81.7 3.5 7.6E-05 30.8 4.8 49 112-172 2-50 (131)
228 COG4545 Glutaredoxin-related p 81.5 3.4 7.5E-05 27.6 4.1 41 113-167 5-45 (85)
229 KOG4614 Inner membrane protein 80.5 3 6.6E-05 34.2 4.3 25 212-236 250-274 (287)
230 TIGR03759 conj_TIGR03759 integ 79.6 5.6 0.00012 31.8 5.5 56 110-178 110-165 (200)
231 KOG3170 Conserved phosducin-li 79.1 1.5 3.3E-05 35.1 2.2 40 107-148 110-149 (240)
232 TIGR00995 3a0901s06TIC22 chlor 77.9 26 0.00056 29.6 9.2 78 83-178 77-157 (270)
233 PRK13344 spxA transcriptional 77.7 5.8 0.00013 29.6 4.9 51 113-175 3-53 (132)
234 KOG1752 Glutaredoxin and relat 77.2 11 0.00024 27.0 6.0 18 108-126 13-30 (104)
235 PF06053 DUF929: Domain of unk 76.4 3.9 8.5E-05 34.1 4.0 34 107-140 57-90 (249)
236 PTZ00062 glutaredoxin; Provisi 75.9 7.7 0.00017 31.4 5.5 37 107-150 111-151 (204)
237 cd03072 PDI_b'_ERp44 PDIb' fam 75.1 26 0.00056 25.1 7.6 33 211-243 75-109 (111)
238 PF02966 DIM1: Mitosis protein 74.8 7.4 0.00016 29.0 4.6 43 107-150 19-61 (133)
239 KOG2507 Ubiquitin regulatory p 73.2 23 0.00049 31.8 7.9 36 207-242 75-111 (506)
240 PF07976 Phe_hydrox_dim: Pheno 71.6 23 0.0005 27.6 7.1 72 79-150 27-116 (169)
241 PRK12759 bifunctional gluaredo 68.1 9.7 0.00021 34.3 4.8 32 112-150 4-35 (410)
242 PF01323 DSBA: DSBA-like thior 67.7 6.9 0.00015 30.6 3.5 40 111-150 1-40 (193)
243 cd02979 PHOX_C FAD-dependent P 67.7 56 0.0012 25.4 10.2 50 85-137 1-55 (167)
244 PF04134 DUF393: Protein of un 65.1 17 0.00037 25.9 4.9 31 115-148 2-32 (114)
245 COG0552 FtsY Signal recognitio 59.8 82 0.0018 27.6 8.7 97 107-222 136-233 (340)
246 cd03025 DsbA_FrnE_like DsbA fa 59.7 12 0.00026 29.3 3.5 27 112-138 3-29 (193)
247 KOG2961 Predicted hydrolase (H 59.6 56 0.0012 25.3 6.7 102 88-196 22-131 (190)
248 COG2179 Predicted hydrolase of 58.1 26 0.00057 27.4 4.9 61 109-178 29-90 (175)
249 KOG1201 Hydroxysteroid 17-beta 56.2 58 0.0013 28.0 7.1 108 102-236 32-139 (300)
250 TIGR00014 arsC arsenate reduct 56.0 28 0.00062 25.1 4.7 48 114-173 3-50 (114)
251 cd03033 ArsC_15kD Arsenate Red 55.4 37 0.00081 24.5 5.2 48 113-172 3-50 (113)
252 PLN02640 glucose-6-phosphate 1 53.2 30 0.00064 32.5 5.3 67 84-150 61-130 (573)
253 PF04278 Tic22: Tic22-like fam 52.4 1.5E+02 0.0032 25.2 11.2 61 84-150 71-136 (274)
254 cd02981 PDI_b_family Protein D 48.6 82 0.0018 21.2 7.7 34 108-145 17-50 (97)
255 cd03024 DsbA_FrnE DsbA family, 47.7 87 0.0019 24.5 6.7 32 114-145 3-35 (201)
256 PF08821 CGGC: CGGC domain; I 47.5 21 0.00046 25.6 2.8 70 100-173 27-100 (107)
257 PRK10853 putative reductase; P 46.9 39 0.00085 24.6 4.2 49 113-173 3-51 (118)
258 cd03060 GST_N_Omega_like GST_N 45.3 63 0.0014 20.5 4.7 31 114-149 3-33 (71)
259 PRK12359 flavodoxin FldB; Prov 43.9 74 0.0016 24.9 5.6 14 229-242 151-165 (172)
260 PRK08294 phenol 2-monooxygenas 43.3 2E+02 0.0044 27.5 9.4 53 80-132 461-518 (634)
261 PF14062 DUF4253: Domain of un 42.9 50 0.0011 23.8 4.2 52 119-173 25-79 (111)
262 TIGR01616 nitro_assoc nitrogen 42.6 69 0.0015 23.7 4.9 48 112-171 3-50 (126)
263 PF10673 DUF2487: Protein of u 42.1 65 0.0014 24.4 4.8 46 105-150 47-94 (142)
264 KOG1364 Predicted ubiquitin re 42.0 27 0.00059 30.5 3.0 37 207-243 152-190 (356)
265 PF11211 DUF2997: Protein of u 41.9 52 0.0011 19.9 3.4 30 213-242 2-34 (48)
266 PF13462 Thioredoxin_4: Thiore 41.4 33 0.00072 25.7 3.3 28 206-239 133-161 (162)
267 PF05673 DUF815: Protein of un 41.2 1.2E+02 0.0026 25.4 6.6 95 110-220 54-148 (249)
268 PRK10026 arsenate reductase; P 40.5 1.1E+02 0.0024 23.1 5.8 50 112-173 4-53 (141)
269 cd03034 ArsC_ArsC Arsenate Red 39.8 79 0.0017 22.6 4.9 49 113-173 2-50 (112)
270 PF02563 Poly_export: Polysacc 39.8 52 0.0011 22.0 3.7 31 213-243 32-68 (82)
271 cd03031 GRX_GRX_like Glutaredo 39.0 1.1E+02 0.0023 23.4 5.6 25 119-150 15-39 (147)
272 COG3011 Predicted thiol-disulf 38.8 1.3E+02 0.0028 22.7 5.9 38 108-148 6-43 (137)
273 PRK13398 3-deoxy-7-phosphohept 38.8 92 0.002 26.3 5.7 30 120-149 32-62 (266)
274 PRK10530 pyridoxal phosphate ( 37.6 2.3E+02 0.0049 23.2 10.4 39 131-178 26-64 (272)
275 COG1535 EntB Isochorismate hyd 36.8 54 0.0012 26.1 3.7 37 112-148 42-78 (218)
276 COG1393 ArsC Arsenate reductas 36.7 1.4E+02 0.0031 21.7 5.8 51 112-174 3-53 (117)
277 PRK15126 thiamin pyrimidine py 36.5 2.4E+02 0.0053 23.2 10.5 38 132-178 26-63 (272)
278 PF11072 DUF2859: Protein of u 36.4 1E+02 0.0023 23.3 5.1 35 125-167 73-107 (142)
279 TIGR00099 Cof-subfamily Cof su 36.3 2.4E+02 0.0051 23.0 10.7 39 131-178 22-60 (256)
280 PRK10976 putative hydrolase; P 35.9 2.4E+02 0.0053 23.1 9.6 39 131-178 25-63 (266)
281 PRK13265 glycine/sarcosine/bet 35.4 37 0.00081 25.5 2.5 37 112-148 33-76 (154)
282 PF04723 GRDA: Glycine reducta 35.1 61 0.0013 24.4 3.6 39 112-150 32-77 (150)
283 TIGR03765 ICE_PFL_4695 integra 35.1 1.5E+02 0.0033 21.2 5.4 34 126-167 36-69 (105)
284 COG2761 FrnE Predicted dithiol 35.1 1.3E+02 0.0029 24.7 5.9 41 109-149 4-46 (225)
285 PF01106 NifU: NifU-like domai 34.8 1.3E+02 0.0028 19.5 4.8 33 97-130 15-47 (68)
286 COG3019 Predicted metal-bindin 34.8 1.2E+02 0.0025 23.1 5.0 32 112-150 28-59 (149)
287 COG0525 ValS Valyl-tRNA synthe 34.3 50 0.0011 32.7 3.8 21 117-137 172-192 (877)
288 PF12017 Tnp_P_element: Transp 33.7 1.8E+02 0.0038 24.1 6.5 25 127-151 195-219 (236)
289 PF14307 Glyco_tran_WbsX: Glyc 33.4 84 0.0018 27.5 4.9 43 107-149 157-199 (345)
290 PF06764 DUF1223: Protein of u 33.3 1.4E+02 0.0029 24.1 5.7 36 114-152 4-39 (202)
291 COG1512 Beta-propeller domains 32.6 2.8E+02 0.0061 23.5 7.6 12 212-223 101-113 (271)
292 COG2761 FrnE Predicted dithiol 31.7 72 0.0016 26.2 3.8 33 206-243 181-214 (225)
293 PF12681 Glyoxalase_2: Glyoxal 31.7 1.6E+02 0.0035 19.8 5.4 15 211-225 93-107 (108)
294 PF13743 Thioredoxin_5: Thiore 31.5 46 0.001 26.0 2.7 30 114-144 2-31 (176)
295 COG1791 Uncharacterized conser 31.5 2.6E+02 0.0056 22.0 7.8 52 117-173 43-94 (181)
296 PF08806 Sep15_SelM: Sep15/Sel 31.1 50 0.0011 22.2 2.4 30 211-240 43-74 (78)
297 PRK06756 flavodoxin; Provision 31.0 1.3E+02 0.0029 22.3 5.1 9 105-113 80-88 (148)
298 PLN02333 glucose-6-phosphate 1 30.7 4.9E+02 0.011 24.9 10.6 45 106-150 114-159 (604)
299 cd08352 Glo_EDI_BRP_like_1 Thi 30.6 1.8E+02 0.0039 19.9 6.9 15 212-226 110-124 (125)
300 KOG3384 Selenoprotein [General 30.5 1.4E+02 0.003 22.5 4.8 16 211-226 118-133 (154)
301 cd08344 MhqB_like_N N-terminal 30.5 1.8E+02 0.004 20.0 6.4 18 212-229 93-110 (112)
302 PF03960 ArsC: ArsC family; I 30.3 92 0.002 22.0 3.9 51 116-178 2-52 (110)
303 COG3769 Predicted hydrolase (H 29.8 1.7E+02 0.0036 24.3 5.5 37 133-178 31-68 (274)
304 COG2607 Predicted ATPase (AAA+ 29.8 1.8E+02 0.0039 24.5 5.8 81 128-219 100-180 (287)
305 PF10790 DUF2604: Protein of U 29.7 48 0.001 21.4 1.9 26 80-105 28-53 (76)
306 PRK04101 fosfomycin resistance 29.1 1.5E+02 0.0031 21.6 5.0 22 211-232 102-123 (139)
307 PRK14324 glmM phosphoglucosami 29.0 2.4E+02 0.0051 25.6 7.2 39 141-180 199-242 (446)
308 PF01976 DUF116: Protein of un 28.7 2.7E+02 0.0059 21.4 7.3 40 119-174 69-108 (158)
309 cd08353 Glo_EDI_BRP_like_7 Thi 28.6 2.3E+02 0.0049 20.4 6.4 15 211-225 124-138 (142)
310 KOG1615 Phosphoserine phosphat 28.2 1.9E+02 0.0041 23.5 5.5 40 127-175 90-129 (227)
311 PF09419 PGP_phosphatase: Mito 28.0 2.5E+02 0.0055 21.9 6.2 86 87-174 17-108 (168)
312 PRK10887 glmM phosphoglucosami 27.9 3.4E+02 0.0073 24.6 8.0 37 141-178 195-236 (443)
313 PRK05778 2-oxoglutarate ferred 27.7 63 0.0014 27.8 3.0 20 117-137 18-37 (301)
314 COG0541 Ffh Signal recognition 27.1 4.2E+02 0.0091 24.2 8.1 61 107-174 97-157 (451)
315 PF01323 DSBA: DSBA-like thior 26.6 68 0.0015 24.8 2.9 28 206-238 164-192 (193)
316 KOG3363 Uncharacterized conser 26.4 2.5E+02 0.0055 21.9 5.7 58 117-178 87-146 (196)
317 PRK11867 2-oxoglutarate ferred 26.3 57 0.0012 27.8 2.5 20 117-137 17-36 (286)
318 PRK06183 mhpA 3-(3-hydroxyphen 25.7 5.4E+02 0.012 23.8 10.0 34 82-115 411-445 (538)
319 TIGR02177 PorB_KorB 2-oxoacid: 25.6 73 0.0016 27.2 3.0 19 118-137 2-20 (287)
320 cd00570 GST_N_family Glutathio 25.3 1.6E+02 0.0034 17.5 4.4 31 114-149 3-33 (71)
321 cd07202 cPLA2_Grp-IVC Group IV 24.7 1.2E+02 0.0025 27.6 4.2 40 138-179 303-342 (430)
322 PF03544 TonB_C: Gram-negative 24.3 38 0.00081 22.0 0.9 14 212-225 20-33 (79)
323 cd03059 GST_N_SspA GST_N famil 24.1 1.4E+02 0.003 18.7 3.6 18 114-131 3-20 (73)
324 PF10589 NADH_4Fe-4S: NADH-ubi 23.7 11 0.00024 22.5 -1.6 21 119-139 18-38 (46)
325 PF12690 BsuPI: Intracellular 23.6 88 0.0019 21.1 2.6 19 212-230 27-45 (82)
326 PF02743 Cache_1: Cache domain 23.3 43 0.00093 22.0 1.0 15 212-226 55-69 (81)
327 PRK14315 glmM phosphoglucosami 23.2 4.6E+02 0.01 23.7 7.9 19 159-178 223-241 (448)
328 PF02670 DXP_reductoisom: 1-de 23.1 1.7E+02 0.0037 21.8 4.2 39 132-179 16-54 (129)
329 PF07411 DUF1508: Domain of un 23.1 1.8E+02 0.0039 17.4 3.7 31 211-241 6-37 (49)
330 PF11303 DUF3105: Protein of u 23.0 3.2E+02 0.007 20.3 5.8 21 118-139 57-77 (130)
331 COG0300 DltE Short-chain dehyd 22.9 3.1E+02 0.0066 23.2 6.2 18 132-149 21-38 (265)
332 TIGR01352 tonB_Cterm TonB fami 22.9 1E+02 0.0022 19.5 2.8 15 211-225 13-27 (74)
333 KOG1014 17 beta-hydroxysteroid 22.8 2.9E+02 0.0062 24.0 6.0 95 101-221 42-136 (312)
334 PF10813 DUF2733: Protein of u 22.6 47 0.001 18.3 0.8 14 92-105 14-27 (32)
335 PF09547 Spore_IV_A: Stage IV 22.5 2.7E+02 0.0059 25.5 6.0 60 107-177 179-238 (492)
336 PRK11478 putative lyase; Provi 22.4 2.8E+02 0.0061 19.4 6.7 16 211-226 112-127 (129)
337 PRK09267 flavodoxin FldA; Vali 22.1 2.3E+02 0.005 21.5 5.1 10 232-241 153-163 (169)
338 COG0821 gcpE 1-hydroxy-2-methy 22.1 1.6E+02 0.0035 25.8 4.4 81 120-244 264-353 (361)
339 PF14903 WG_beta_rep: WG conta 22.0 60 0.0013 17.3 1.3 11 215-225 3-13 (35)
340 cd07255 Glo_EDI_BRP_like_12 Th 21.7 2.8E+02 0.0062 19.2 6.8 18 211-228 102-119 (125)
341 cd03041 GST_N_2GST_N GST_N fam 21.5 2.4E+02 0.0051 18.2 5.7 19 114-132 4-22 (77)
342 PF09822 ABC_transp_aux: ABC-t 21.5 4.7E+02 0.01 21.6 11.2 59 110-176 26-89 (271)
343 PRK08132 FAD-dependent oxidore 21.5 6.6E+02 0.014 23.3 10.0 35 82-117 427-462 (547)
344 cd03084 phosphohexomutase The 21.4 3.8E+02 0.0083 23.3 6.9 11 213-223 188-198 (355)
345 PRK01261 aroD 3-dehydroquinate 20.7 4.8E+02 0.01 21.4 8.5 35 120-154 25-59 (229)
346 cd07238 Glo_EDI_BRP_like_5 Thi 20.6 2.9E+02 0.0062 18.8 5.7 16 211-226 94-109 (112)
347 PRK14316 glmM phosphoglucosami 20.5 4.2E+02 0.0092 23.9 7.2 37 141-178 197-238 (448)
348 TIGR01689 EcbF-BcbF capsule bi 20.4 3.5E+02 0.0075 19.9 5.4 46 132-178 31-83 (126)
349 TIGR01488 HAD-SF-IB Haloacid D 20.4 3.8E+02 0.0081 20.1 7.4 37 128-173 76-112 (177)
350 cd01450 vWFA_subfamily_ECM Von 20.2 3.5E+02 0.0075 19.6 6.0 33 129-167 120-152 (161)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=2.8e-44 Score=293.97 Aligned_cols=232 Identities=77% Similarity=1.174 Sum_probs=205.8
Q ss_pred CCC-ccccccCCccccccccCCCcchhccccccCCCccccccccCCCCCccccCCccccCCCCCCCcccccccccccccc
Q 026028 5 SMP-FSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAA 83 (244)
Q Consensus 5 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (244)
||+ ++++++++.+.++..++++. .+++ +|+.+++.++++++++++++++++++.++...++|++.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PLN02399 3 SLTTSSSSYASFKTVFNSSPPPPS------MAFL--VPSLKSSTGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYARAA 74 (236)
T ss_pred ccccccccccccccccccCCCCCc------cccc--cceeeeccccccchhhccccccccCCCccccccccccccccchh
Confidence 344 45677788887777665444 2244 89999999999999999999999999999999999999888889
Q ss_pred cCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHH
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~ 163 (244)
.|+.+|+|+++|++|+.++|++++||++||+||++||++|..++|+|++++++|+++|++||+|++|+++.+++++.+++
T Consensus 75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777777888999
Q ss_pred HHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
.+|+.++++++||++.+.|.+|....+.|++++...++..++.+.|+|++||||++|+|+++|.|..++++++ .|+++|
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 9998678999999997777778778899998876666665666788999999999999999999999999999 999998
Q ss_pred hC
Q 026028 243 VA 244 (244)
Q Consensus 243 ~~ 244 (244)
++
T Consensus 235 ~~ 236 (236)
T PLN02399 235 AA 236 (236)
T ss_pred cC
Confidence 74
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=3.1e-33 Score=219.64 Aligned_cols=160 Identities=73% Similarity=1.226 Sum_probs=143.5
Q ss_pred CCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHH
Q 026028 85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (244)
Q Consensus 85 g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~ 164 (244)
.+.+|+|+++|.+|+.++|++++||++||+||++||++|..+++.|++++++|+++|++||+|++|++...+.++.+++.
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999977666667777777
Q ss_pred HHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 165 ~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
++..++++++||++.+.|.++....+.|+++....++..+..+.++|++||||++|+|++++.|..++++++ .|+++|+
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 765588999999997777777778999999887766666666888899999999999999999999999999 9999987
Q ss_pred C
Q 026028 244 A 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 166 ~ 166 (167)
T PLN02412 166 Q 166 (167)
T ss_pred h
Confidence 4
No 3
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=100.00 E-value=1.3e-32 Score=217.71 Aligned_cols=158 Identities=46% Similarity=0.843 Sum_probs=144.2
Q ss_pred CcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHH
Q 026028 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (244)
Q Consensus 86 ~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~ 165 (244)
+.+++|+++|++|+.++|++++||+|||+|||+||+.|. +++.|++++++|+++|++||+|++|+|+.+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 468999999999999999999999999999999999996 7999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCC--------------------CcCCccccceeEEEECCCCcEEEE
Q 026028 166 FACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG--------------------FLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 166 ~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
|++++++++||++.+.|++|....++|.+++...+. ..+..|.|+.+.||||++|+++.+
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 995579999999999999999999999999875541 123469999999999999999999
Q ss_pred cCCCCChhh--HH-HHHHHHhC
Q 026028 226 YPPTTSPFQ--IE-DIQKLVVA 244 (244)
Q Consensus 226 ~~g~~~~~~--l~-~i~~lL~~ 244 (244)
|.+...|.+ ++ .|+++|++
T Consensus 162 ~~~~~~p~~~~i~~~i~~~l~~ 183 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLALAK 183 (183)
T ss_pred ECCCCCCCHHHHHHHHHHHhcC
Confidence 999998887 88 99998853
No 4
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=1.4e-32 Score=221.38 Aligned_cols=163 Identities=39% Similarity=0.742 Sum_probs=142.5
Q ss_pred ccccCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCCh
Q 026028 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~ 160 (244)
....+..+|+|+++|.+|+.++|++++||+|||+||++||++|+.++|.|++++++|+++|++||+|++|+++.++.++.
T Consensus 12 ~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 12 KDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998877777889
Q ss_pred HHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcC-----CccccceeEEEECCCCcEEEEcCCCCChhhH
Q 026028 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-----DLVKWNFEKFLVDKNGKVIERYPPTTSPFQI 235 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l 235 (244)
+++++|+ ++++++||++.|.+.+|....+++.+++.......+ ..+.|.|++||||++|+|++++.|..+++++
T Consensus 92 e~~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l 170 (199)
T PTZ00056 92 KDIRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLEL 170 (199)
T ss_pred HHHHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHH
Confidence 9999999 789999999988778888888888877644332211 1355667899999999999999999999899
Q ss_pred H-HHHHHHhC
Q 026028 236 E-DIQKLVVA 244 (244)
Q Consensus 236 ~-~i~~lL~~ 244 (244)
+ .|+++|++
T Consensus 171 ~~~I~~ll~~ 180 (199)
T PTZ00056 171 EKKIAELLGV 180 (199)
T ss_pred HHHHHHHHHH
Confidence 9 99998863
No 5
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-32 Score=201.22 Aligned_cols=158 Identities=57% Similarity=1.072 Sum_probs=151.0
Q ss_pred CcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHH
Q 026028 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (244)
Q Consensus 86 ~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~ 165 (244)
..+.||++++++|++++|++|+||++||...|+.|+... +...|+.||++|+++|++|+++.+|||+.+++++.+++.+
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 357899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCC-CcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 166 FACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 166 ~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
|+..+|+++||++...+++|....++|++|+....+ ..+..|.|+.+.||||++|+|+.||.+...|++++ .|+++|+
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 999999999999999999999999999999988765 56678999999999999999999999999999999 9999997
Q ss_pred C
Q 026028 244 A 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 162 ~ 162 (162)
T COG0386 162 E 162 (162)
T ss_pred C
Confidence 4
No 6
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.97 E-value=5.1e-31 Score=204.18 Aligned_cols=149 Identities=62% Similarity=1.126 Sum_probs=123.8
Q ss_pred cccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHH
Q 026028 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF 166 (244)
Q Consensus 87 ~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~ 166 (244)
.+|+|+++|.+|+.++|++++||+|||+||++||+ |..++|.|++++++|+++|++||+|++|.++.++.++.+++++|
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 37999999999999999999999999999999999 99999999999999999999999999986655556778899999
Q ss_pred HHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 167 ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 167 ~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
+.++++++||++.|.|.++....+.|+++.....+..+..+.+.|++||||++|+|++++.|..++++++
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~ 149 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELE 149 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHH
Confidence 9434899999997766566556677776544333221233556679999999999999999998887765
No 7
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.97 E-value=1.3e-30 Score=207.81 Aligned_cols=161 Identities=47% Similarity=0.858 Sum_probs=135.6
Q ss_pred cCCcccceEEEcCCCCeeecCCcCCCEE-EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHH
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~gk~v-ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~ 162 (244)
.++.+|+|+++|.+|+.++|++++||++ |+.||++|||+|+.++|.|++++++|+++|++||+|++|++..+++++.++
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 3678999999999999999999999954 566799999999999999999999999999999999998766666667788
Q ss_pred HHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCc--CCccccce---eEEEECCCCcEEEEcCCCCChhhHH-
Q 026028 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL--GDLVKWNF---EKFLVDKNGKVIERYPPTTSPFQIE- 236 (244)
Q Consensus 163 ~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~--~~~i~~~P---~~~lID~~G~I~~~~~g~~~~~~l~- 236 (244)
+.+|..++++++||++.|.|.++....++|+++....+.+. ...+..+| ++||||++|+|++++.|..++++++
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~ 175 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ 175 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence 99998568899999998777777777889988877654221 11233446 5799999999999999999998899
Q ss_pred HHHHHHhC
Q 026028 237 DIQKLVVA 244 (244)
Q Consensus 237 ~i~~lL~~ 244 (244)
.|+++|++
T Consensus 176 ~I~~ll~~ 183 (183)
T PTZ00256 176 DIEKLLNA 183 (183)
T ss_pred HHHHHhcC
Confidence 99999874
No 8
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=196.03 Aligned_cols=163 Identities=64% Similarity=1.121 Sum_probs=156.8
Q ss_pred cccCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChH
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~ 161 (244)
....+++.||+.+|++|+.|+|++|+||++||.-.|+.|+....+..+|+.|+++|+++|++|++..++||+.+++++.+
T Consensus 8 ~~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 8 ADEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred hhhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 162 ~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
++..+++.+++..||++...|++|....++|++++...++.+++.|.|+.+.||||++|+++.||....++.+++ +|++
T Consensus 88 Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~ 167 (171)
T KOG1651|consen 88 EILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEK 167 (171)
T ss_pred HHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHhC
Q 026028 241 LVVA 244 (244)
Q Consensus 241 lL~~ 244 (244)
+|++
T Consensus 168 lL~~ 171 (171)
T KOG1651|consen 168 LLAQ 171 (171)
T ss_pred HhcC
Confidence 9864
No 9
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=4.9e-30 Score=198.89 Aligned_cols=151 Identities=42% Similarity=0.805 Sum_probs=128.0
Q ss_pred ccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 88 ~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
+.+|+++|.+|+.++|++++||++||+||++|||+|..+++.|++++++|+++|++||+|++++++..+.++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998877777778899999999
Q ss_pred HHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 168 ~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
+++++++||++.|.+..+......|++.....++. ..|+.++||||++|+|++++.|..++++++ .|+++|
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~----p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKE----PRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCC----CCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 43489999999776666666677777654322111 233345999999999999999999999999 898875
No 10
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=182.40 Aligned_cols=141 Identities=20% Similarity=0.305 Sum_probs=119.0
Q ss_pred ccccCCcccceEEEcCCCCeeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
.+.+|+++|||+|++.+|+.++|++++||+|||+|| ..++|.|..+...+++.+++|++.|.+|||||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 356899999999999999999999999999999999 8999999999999999999999999999999987 9
Q ss_pred hHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhcc--CCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA--GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~--~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
.+.+++|+ ++++++|++++|.+ ..+.+.|+...... |... ....+.+||||++|+|++.|.......+.+
T Consensus 75 ~~~~~~F~-~k~~L~f~LLSD~~---~~v~~~ygv~~~k~~~gk~~---~~~~R~TfvId~dG~I~~~~~~v~~~~h~~ 146 (157)
T COG1225 75 PKSHKKFA-EKHGLTFPLLSDED---GEVAEAYGVWGEKKMYGKEY---MGIERSTFVIDPDGKIRYVWRKVKVKGHAD 146 (157)
T ss_pred HHHHHHHH-HHhCCCceeeECCc---HHHHHHhCcccccccCcccc---ccccceEEEECCCCeEEEEecCCCCcccHH
Confidence 99999999 89999999997654 44788888766432 1111 112389999999999999995554444444
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.94 E-value=1.2e-26 Score=178.30 Aligned_cols=143 Identities=29% Similarity=0.449 Sum_probs=108.9
Q ss_pred ccCCcccceEEEc--CCCCeeecCCcCCCEEEEEEecC-CCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 83 ATEKSLYDFTVKD--IDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 83 ~~g~~~pdf~l~~--~~g~~v~L~~~~gk~vll~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
++|+++|+|++++ .+|++++|++++||++||+||++ |||+|..++|.|++++++|+++|+++|+|+.+ +
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~ 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------D 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------S
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------C
Confidence 4799999999966 99999999999999999999999 99999999999999999999999999999987 4
Q ss_pred hHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 026028 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEDIQ 239 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~~i~ 239 (244)
...+.+|+ ++++.+|+++.|.+ ....+.|+... ....+.+ ..+|+++|||++|+|++++.|..+. +...++
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~D~~---~~~~~~~~~~~---~~~~~~~-~~~P~~~lId~~G~V~~~~~g~~~~-~~~~~~ 143 (146)
T PF08534_consen 73 DPPVREFL-KKYGINFPVLSDPD---GALAKALGVTI---MEDPGNG-FGIPTTFLIDKDGKVVYRHVGPDPD-EESDLE 143 (146)
T ss_dssp SHHHHHHH-HHTTTTSEEEEETT---SHHHHHTTCEE---ECCTTTT-SSSSEEEEEETTSBEEEEEESSBTT-SHHSHH
T ss_pred CHHHHHHH-HhhCCCceEEechH---HHHHHHhCCcc---ccccccC-CeecEEEEEECCCEEEEEEeCCCCC-CCCChh
Confidence 44488888 77899999996522 23444443110 0000000 1459999999999999999998772 222455
Q ss_pred HHH
Q 026028 240 KLV 242 (244)
Q Consensus 240 ~lL 242 (244)
++|
T Consensus 144 ~~l 146 (146)
T PF08534_consen 144 AVL 146 (146)
T ss_dssp HHH
T ss_pred hcC
Confidence 443
No 12
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.93 E-value=2.1e-25 Score=173.02 Aligned_cols=149 Identities=16% Similarity=0.238 Sum_probs=115.8
Q ss_pred ccccCCcccceEEEcCCCCeeecCCcCCCEEEEEEecC-CCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
....|+.+|+|+++|.+|+.++|++++||++||+||++ ||+.|..+++.|++++++++++|++||+|+.| +
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~ 74 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------K 74 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence 35679999999999999999999999999999999976 78899999999999999999999999999987 7
Q ss_pred hHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccC-CCcCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 026028 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEDI 238 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~~i 238 (244)
.+++++|+ ++++.+||++.|. . ....+.|+....... +.....+ .|++||||++|+|++.|.|....+.++.+
T Consensus 75 ~~~~~~~~-~~~~~~~~~l~D~--~-~~~~~~~gv~~~~~~~~~~~~~~--~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 148 (154)
T PRK09437 75 PEKLSRFA-EKELLNFTLLSDE--D-HQVAEQFGVWGEKKFMGKTYDGI--HRISFLIDADGKIEHVFDKFKTSNHHDVV 148 (154)
T ss_pred HHHHHHHH-HHhCCCCeEEECC--C-chHHHHhCCCcccccccccccCc--ceEEEEECCCCEEEEEEcCCCcchhHHHH
Confidence 89999999 7889999999542 2 334555553221100 0000001 27889999999999999997766665544
Q ss_pred HHHHh
Q 026028 239 QKLVV 243 (244)
Q Consensus 239 ~~lL~ 243 (244)
.+.++
T Consensus 149 ~~~~~ 153 (154)
T PRK09437 149 LDYLK 153 (154)
T ss_pred HHHHh
Confidence 44433
No 13
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=7.4e-26 Score=180.69 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=110.3
Q ss_pred ccccCCcccceEEEcCCC--CeeecCCc-CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKDIDG--KDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g--~~v~L~~~-~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~ 157 (244)
....|+++|+|+++|++| +.++++++ +||++||+||++||++|+.++|.|+++++ +|++||+|+.|
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~------- 106 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK------- 106 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 355899999999999984 67777765 79999999999999999999999988854 47999999986
Q ss_pred CChHHHHHHHHHhcCCCcce-eeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 158 GSNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~-l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
++.+++.+|+ ++++.+||+ +. |..+ .....|+ +..+|++||||++|+|++++.|..++++++
T Consensus 107 ~~~~~~~~~~-~~~~~~~~~~~~--D~~~-~~~~~~g-------------v~~~P~t~vid~~G~i~~~~~G~~~~~~l~ 169 (185)
T PRK15412 107 DDRQKAISWL-KELGNPYALSLF--DGDG-MLGLDLG-------------VYGAPETFLIDGNGIIRYRHAGDLNPRVWE 169 (185)
T ss_pred CCHHHHHHHH-HHcCCCCceEEE--cCCc-cHHHhcC-------------CCcCCeEEEECCCceEEEEEecCCCHHHHH
Confidence 3677889998 788999995 53 3222 2333333 455699999999999999999999999999
Q ss_pred -HHHHHHh
Q 026028 237 -DIQKLVV 243 (244)
Q Consensus 237 -~i~~lL~ 243 (244)
.|+.+++
T Consensus 170 ~~i~~~~~ 177 (185)
T PRK15412 170 SEIKPLWE 177 (185)
T ss_pred HHHHHHHH
Confidence 8888875
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.93 E-value=1.1e-25 Score=167.83 Aligned_cols=123 Identities=28% Similarity=0.485 Sum_probs=104.6
Q ss_pred cCCcccceEEEcCCCCeeecCCcCCCEEEEEEecC-CCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHH
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~ 162 (244)
+|+++|+|++++.+|+.++|++++||++||.||.+ ||+.|..++++|++++++|+++|+++++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 59999999999999999999999999999999988 99999999999999999999999999999987 7889
Q ss_pred HHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEE
Q 026028 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 163 ~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
+++|. ++++.+||++.|.+ ....+.|+..... .....|.+||||++|+|+++
T Consensus 73 ~~~~~-~~~~~~~~~~~D~~---~~~~~~~~~~~~~-------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVLSDPD---GELAKAFGIEDEK-------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHH-HHHTCSSEEEEETT---SHHHHHTTCEETT-------TSEESEEEEEEETTSBEEEE
T ss_pred hhhhh-hhhccccccccCcc---hHHHHHcCCcccc-------CCceEeEEEEECCCCEEEeC
Confidence 99998 78899999996522 3344555432111 12245999999999999875
No 15
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.93 E-value=4.2e-25 Score=170.12 Aligned_cols=144 Identities=19% Similarity=0.319 Sum_probs=112.0
Q ss_pred ccCCcccceEEEcCCCCeeecCCcCC-CEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCCh
Q 026028 83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~g~~v~L~~~~g-k~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~ 160 (244)
.+|+.+|+|++.+.+|+.+++++++| |++||.|| ++||+.|..++++|++++++++++|+++|+|+.| +.
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 47999999999999999999999999 99999888 9999999999999999999999889999999987 67
Q ss_pred HHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHH
Q 026028 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQ 239 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~ 239 (244)
+.+++|+ ++++++||++.|.+.. ....+.|+...... + + ..|++||||++|+|++.+.|......-+ .+.
T Consensus 74 ~~~~~~~-~~~~~~~~~~~D~~~~-~~~~~~~g~~~~~~-~-----~-~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~ 144 (149)
T cd03018 74 FSLRAWA-EENGLTFPLLSDFWPH-GEVAKAYGVFDEDL-G-----V-AERAVFVIDRDGIIRYAWVSDDGEPRDLPDYD 144 (149)
T ss_pred HHHHHHH-HhcCCCceEecCCCch-hHHHHHhCCccccC-C-----C-ccceEEEECCCCEEEEEEecCCcccccchhHH
Confidence 8899998 7889999999543211 22344444321110 0 1 1268999999999999998876222223 455
Q ss_pred HHHh
Q 026028 240 KLVV 243 (244)
Q Consensus 240 ~lL~ 243 (244)
++|+
T Consensus 145 ~~~~ 148 (149)
T cd03018 145 EALD 148 (149)
T ss_pred HHhh
Confidence 5544
No 16
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.93 E-value=1.3e-24 Score=170.69 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=109.9
Q ss_pred cccCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCC-CCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCCh
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~ 160 (244)
..+|+.+|+|+++|.+|+.++|++++||++||+||++| |++|..+++.|+++++++. |++||+||.| +.
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~~ 87 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------LP 87 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------CH
Confidence 45899999999999999999999999999999999998 9999999999999999983 7999999987 67
Q ss_pred HHHHHHHHHhcCCC-cceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC--CChhhHHH
Q 026028 161 PEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--TSPFQIED 237 (244)
Q Consensus 161 ~~~~~~~~~~~~~~-~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~--~~~~~l~~ 237 (244)
+.+++|+ ++++++ ++++.| ..+....+.|+...... ...+ + ..|++||||++|+|++.+.+. .+..++++
T Consensus 88 ~~~~~f~-~~~~~~~~~~lsD--~~~~~~~~~~gv~~~~~-~~~g--~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~ 160 (167)
T PRK00522 88 FAQKRFC-GAEGLENVITLSD--FRDHSFGKAYGVAIAEG-PLKG--L-LARAVFVLDENNKVVYSELVPEITNEPDYDA 160 (167)
T ss_pred HHHHHHH-HhCCCCCceEeec--CCccHHHHHhCCeeccc-ccCC--c-eeeEEEEECCCCeEEEEEECCCcCCCCCHHH
Confidence 8889998 788887 788844 23334566666432210 0011 1 127999999999999998543 33345653
Q ss_pred HHHHH
Q 026028 238 IQKLV 242 (244)
Q Consensus 238 i~~lL 242 (244)
+.+.|
T Consensus 161 ~l~~l 165 (167)
T PRK00522 161 ALAAL 165 (167)
T ss_pred HHHHh
Confidence 33333
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.92 E-value=6e-25 Score=167.45 Aligned_cols=135 Identities=22% Similarity=0.378 Sum_probs=110.7
Q ss_pred CcccceEEEcCCCCeeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHH
Q 026028 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (244)
Q Consensus 86 ~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~ 164 (244)
+.+|+|+++|.+|+.+++++++||++||+|| ++|||.|..+++.|++++++++++|++||+|+.| +.+.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 4689999999999999999999999999999 6899999999999999999999989999999987 788999
Q ss_pred HHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 165 ~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
+|+ ++++++||++.|.+ ..+.+.|+......++ .....|++||||++|+|++.+.|....+.++
T Consensus 73 ~~~-~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~----~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 73 KFA-EKYGLPFPLLSDPD---GKLAKAYGVWGEKKKK----YMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred HHH-HHhCCCceEEECCc---cHHHHHhCCccccccc----cCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 999 78899999996533 2355555533221111 1122389999999999999999988666665
No 18
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.92 E-value=2e-24 Score=170.35 Aligned_cols=142 Identities=23% Similarity=0.398 Sum_probs=115.0
Q ss_pred CCcccceEEEcCCCCeeecCCc-CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHH
Q 026028 85 EKSLYDFTVKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 85 g~~~pdf~l~~~~g~~v~L~~~-~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~ 163 (244)
|+.+|+|++++.+|+.++|+++ +||++||+||++|||.|..++++|++++++|+++++++|+|++|.....+.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 6789999999999999999998 899999999999999999999999999999998889999999984322233578899
Q ss_pred HHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcC---------CCCChhh
Q 026028 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP---------PTTSPFQ 234 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~---------g~~~~~~ 234 (244)
++|+ ++++++|+++.|.+ ..+.+.|+ +...|.+||||++|+|++... +..+..+
T Consensus 81 ~~~~-~~~~~~~~~l~D~~---~~~~~~~~-------------v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKA-KEHGYPFPYLLDET---QEVAKAYG-------------AACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHH-HHCCCCceEEECCc---hHHHHHcC-------------CCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 9999 78899999995432 22334443 445599999999999998741 1224456
Q ss_pred HH-HHHHHHh
Q 026028 235 IE-DIQKLVV 243 (244)
Q Consensus 235 l~-~i~~lL~ 243 (244)
+. .|+++|.
T Consensus 144 ~~~~i~~~l~ 153 (171)
T cd02969 144 LRAALDALLA 153 (171)
T ss_pred HHHHHHHHHc
Confidence 77 8888774
No 19
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=3.2e-24 Score=169.21 Aligned_cols=138 Identities=26% Similarity=0.446 Sum_probs=118.5
Q ss_pred cccccCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 80 ~~~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
.....|+.+|+|++.+.+|+.+++++++||+++|+||++||++|+.+++.|++++++|++.++++++|+.| ++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d-------~~ 105 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD-------ET 105 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC-------CC
Confidence 45668999999999999999999999999999999999999999999999999999999888999999997 36
Q ss_pred hHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HH
Q 026028 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DI 238 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i 238 (244)
.+++.+|. ++++.+|+++.| .+ ....+.|+ +...|++|+||++|+|+..+.|..+.++++ .+
T Consensus 106 ~~~~~~~~-~~~~~~~~~~~d--~~-~~~~~~~~-------------v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 106 ELAVKNFV-NRYGLTFPVAID--KG-RQVIDAYG-------------VGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred HHHHHHHH-HHhCCCceEEEC--Cc-chHHHHcC-------------CCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 78889998 888999999843 22 23334443 455699999999999999999999888887 66
Q ss_pred HHH
Q 026028 239 QKL 241 (244)
Q Consensus 239 ~~l 241 (244)
+++
T Consensus 169 ~~~ 171 (173)
T PRK03147 169 EKI 171 (173)
T ss_pred HHh
Confidence 654
No 20
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.92 E-value=1.7e-24 Score=171.06 Aligned_cols=137 Identities=20% Similarity=0.224 Sum_probs=109.2
Q ss_pred ccccCCcccceEEEcCCCC--eeecCCc-CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKDIDGK--DVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g~--~v~L~~~-~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~ 157 (244)
...+|+++|+|+++|.+|+ .++++++ +||++||+||++||++|+.++|.++++++ +|+++|+|+.|
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~------- 101 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK------- 101 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 3568999999999999997 4555565 79999999999999999999999988764 46999999976
Q ss_pred CChHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-
Q 026028 158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE- 236 (244)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~- 236 (244)
++.++..+|+ ++++.+|+.+. .|..+ ...+.|+ +...|++|+||++|+|++++.|..+.++++
T Consensus 102 ~~~~~~~~~~-~~~~~~f~~v~-~D~~~-~~~~~~~-------------v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~ 165 (173)
T TIGR00385 102 DQSQNALKFL-KELGNPYQAIL-IDPNG-KLGLDLG-------------VYGAPETFLVDGNGVILYRHAGPLNNEVWTE 165 (173)
T ss_pred CChHHHHHHH-HHcCCCCceEE-ECCCC-chHHhcC-------------CeeCCeEEEEcCCceEEEEEeccCCHHHHHH
Confidence 2556677888 78899998431 23332 3444443 444599999999999999999999999999
Q ss_pred HHHHHHhC
Q 026028 237 DIQKLVVA 244 (244)
Q Consensus 237 ~i~~lL~~ 244 (244)
.|++++++
T Consensus 166 ~l~~~~~~ 173 (173)
T TIGR00385 166 GFLPAMEK 173 (173)
T ss_pred HHHHHhhC
Confidence 89988764
No 21
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=1.9e-24 Score=172.85 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=103.8
Q ss_pred ccCCcccceEEEc-CCCC--eeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCC
Q 026028 83 ATEKSLYDFTVKD-IDGK--DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 83 ~~g~~~pdf~l~~-~~g~--~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~ 158 (244)
.+|+.+|+|++++ .+|+ .+++++++||++||+|| ++||++|..++++|++++++|+++|++||+||.|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 4799999999999 5776 68888999999999999 9999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHh---cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCC
Q 026028 159 SNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 159 ~~~~~~~~~~~~---~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~ 230 (244)
+.+.+++|.... .+++||++.|.+ ..+.+.|+......+ ...|++||||++|+|++.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD~~---~~~a~~~gv~~~~~g-------~~~p~tfiID~~G~I~~~~~~~~ 139 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGDPT---GVLTRNFGVLIEEAG-------LADRGTFVIDPEGVIQAVEITDN 139 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEECCc---cHHHHHhCCcccCCC-------ceeeEEEEECCCCEEEEEEEeCC
Confidence 667777776321 368899995532 345666664322111 12399999999999999886543
No 22
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.92 E-value=2.4e-24 Score=164.93 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=103.2
Q ss_pred cCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCC-CCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHH
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~ 162 (244)
+|+.+|+|++++.+|+.++|++++||++||+||++| |++|+.+++.|++++++++ |+.||+|+.| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999988 6999999999999999984 7999999987 6778
Q ss_pred HHHHHHHhcCC-CcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCC
Q 026028 163 IKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 163 ~~~~~~~~~~~-~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~ 230 (244)
+++|. ++++. +|+++.|.+ .....+.|+......+ + ..|++||||++|+|++.+.|..
T Consensus 72 ~~~~~-~~~~~~~~~~l~D~~--~~~~~~~~gv~~~~~~------~-~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 72 QKRWC-GAEGVDNVTTLSDFR--DHSFGKAYGVLIKDLG------L-LARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred HHHHH-HhcCCCCceEeecCc--ccHHHHHhCCeeccCC------c-cceEEEEEcCCCeEEEEEECCC
Confidence 88998 67775 799885532 1345556654322111 1 1389999999999999987653
No 23
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.92 E-value=4e-24 Score=168.98 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=102.6
Q ss_pred cCCcccceEEEcCCC----CeeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCC
Q 026028 84 TEKSLYDFTVKDIDG----KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g----~~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~ 158 (244)
+|+.+|+|++++.+| +.++|++++||++||+|| ++||++|..+++.|++++++|+++|+.|++|+.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 589999999999987 789999999999999999 8999999999999999999999999999999987
Q ss_pred ChHHHHHHHHHh------cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCC
Q 026028 159 SNPEIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 159 ~~~~~~~~~~~~------~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~ 230 (244)
+.+...+|.... .+++|+++.|. . ..+.+.|+......+ . ..|++||||++|+|++++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~--~-~~~~~~~gv~~~~~~----~---~~p~~~lID~~G~I~~~~~~~~ 140 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLLADP--K-KKISRDYGVLDEEEG----V---ALRGTFIIDPEGIIRHITVNDL 140 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEEECC--c-hhHHHHhCCccccCC----c---eeeEEEEECCCCeEEEEEecCC
Confidence 555666666221 46889999543 2 335555654322111 0 2389999999999999996554
No 24
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.91 E-value=6.2e-24 Score=171.67 Aligned_cols=141 Identities=24% Similarity=0.344 Sum_probs=107.8
Q ss_pred cccCCcccceEEEcCCCCeeecCCcCCCEEEE-EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCCh
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~ 160 (244)
+.+|+.+|+|++.+.+| .++|++++||++|| +||++|||+|..+++.|++++++|+++|++||+||+| +.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~ 72 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI 72 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence 35899999999999888 69999999997776 5789999999999999999999999999999999988 67
Q ss_pred HHHHHHHH---HhcC--CCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEc----CCCCC
Q 026028 161 PEIKEFAC---TRFK--AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY----PPTTS 231 (244)
Q Consensus 161 ~~~~~~~~---~~~~--~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~----~g~~~ 231 (244)
+.+.+|++ ++++ ++||++.|.+ ..+.+.|+.+....+ . ..|.+||||++|+|++.. .+..+
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~---~~ia~~ygv~~~~~g----~---~~p~~fiId~~G~I~~~~~~~~~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADID---KELAREYNLIDENSG----A---TVRGVFIIDPNQIVRWMIYYPAETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCC---hHHHHHcCCccccCC----c---EEeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 77777662 3444 5899996543 346666765432221 1 239999999999999876 22234
Q ss_pred hhhHH-HHHHH
Q 026028 232 PFQIE-DIQKL 241 (244)
Q Consensus 232 ~~~l~-~i~~l 241 (244)
.+++. .|+.+
T Consensus 143 ~~ellr~l~~l 153 (202)
T PRK13190 143 IDEIIRITKAL 153 (202)
T ss_pred HHHHHHHHHHh
Confidence 44555 55544
No 25
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.91 E-value=2.7e-24 Score=161.42 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=101.6
Q ss_pred CcccceEEEcCCC--CeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHH
Q 026028 86 KSLYDFTVKDIDG--KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 86 ~~~pdf~l~~~~g--~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~ 163 (244)
+.+|+|++++++| +.+++++++||++||+||++||++|+.+++.|+++++++ +++||+|+.| ++.+.+
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~ 70 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENA 70 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHH
Confidence 3689999999999 889999999999999999999999999999999998775 4999999976 478889
Q ss_pred HHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhH
Q 026028 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI 235 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l 235 (244)
++|+ ++++.+|+.+. .|.. ..+.+.|+ +..+|++|+||++|+|++++.|..+.+.+
T Consensus 71 ~~~~-~~~~~~~~~~~-~D~~-~~~~~~~~-------------v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 71 LAWL-ARHGNPYAAVG-FDPD-GRVGIDLG-------------VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHH-HhcCCCCceEE-ECCc-chHHHhcC-------------CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9998 78888886431 2322 23344443 44569999999999999999998877654
No 26
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.91 E-value=8.3e-24 Score=168.36 Aligned_cols=130 Identities=12% Similarity=0.247 Sum_probs=106.0
Q ss_pred cccCCcccceEEEcC-CC--CeeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCC
Q 026028 82 AATEKSLYDFTVKDI-DG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~-~g--~~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~ 157 (244)
+.+|+++|+|+.+.. +| ..++|++++||++||+|| ++|||+|..+++.|++++++|++.|++||+||.|
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D------- 74 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD------- 74 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence 358999999999884 45 467888999999999999 9999999999999999999999999999999988
Q ss_pred CChHHHHHHHHHh---cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC
Q 026028 158 GSNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 158 ~~~~~~~~~~~~~---~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~ 229 (244)
+.+.+++|.++. .+++||+++|.+ ..+.+.|+.+....+ + ..|.+||||++|+|++.+...
T Consensus 75 -~~~~~~a~~~~~~~~~~l~fpllsD~~---~~ia~~ygv~~~~~g------~-~~r~tfIID~~G~I~~~~~~~ 138 (187)
T PRK10382 75 -THFTHKAWHSSSETIAKIKYAMIGDPT---GALTRNFDNMREDEG------L-ADRATFVVDPQGIIQAIEVTA 138 (187)
T ss_pred -CHHHHHHHHHhhccccCCceeEEEcCc---hHHHHHcCCCcccCC------c-eeeEEEEECCCCEEEEEEEeC
Confidence 888999998432 478999996532 457777775433211 1 129999999999999987543
No 27
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.90 E-value=1.1e-23 Score=160.77 Aligned_cols=137 Identities=22% Similarity=0.311 Sum_probs=104.8
Q ss_pred cccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCC-CHHhHHHHHHHHHHhhcCC---eEEEEEecCCCCCCCCCChHH
Q 026028 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 87 ~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~-C~~~~~~l~~l~~~~~~~~---~~vi~Vs~D~~~~~~~~~~~~ 162 (244)
.+|+|++.|.+|+.+++.+++||++||+||++||+. |..+++.|+++++++++++ +++++|+.| +..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d----~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD----PERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC----CCCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999998865 999999998 23357788
Q ss_pred HHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccC-CCcCCccccceeEEEECCCCcEEEEcCC
Q 026028 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 163 ~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~~P~~~lID~~G~I~~~~~g 228 (244)
+++|+ ++++.+|+++.+.+.......+.|+....... ...+..+.+.|.+||||++|+|+++|.|
T Consensus 77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHH-HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 99999 78889999995432111223333432211110 0012234556899999999999998864
No 28
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.90 E-value=2.5e-23 Score=169.19 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=102.9
Q ss_pred ccCCcccceEEEcCCCCeeecCCcCCCEE-EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChH
Q 026028 83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~g~~v~L~~~~gk~v-ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~ 161 (244)
.+|+.+|+|++.+.+|+.+.+++++||++ |+.||++|||+|..+++.|++++++|+++|++||+||+| +.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 48999999999999999888899999976 568889999999999999999999999999999999998 666
Q ss_pred HHHHHHH--H---hcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcC
Q 026028 162 EIKEFAC--T---RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 162 ~~~~~~~--~---~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~ 227 (244)
.+.+|.. + .++++||++.|. + ..+.+.|+.+....+ ....|++||||++|+|++.+.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil~D~--~-~~va~~yg~~~~~~~------~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVIADD--L-GKVSNQLGMIHPGKG------TNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEEECC--C-chHHHHcCCCccCCC------CceeeEEEEECCCCEEEEEEE
Confidence 6666642 2 357899999653 3 346677775432211 123499999999999998863
No 29
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.90 E-value=2.1e-23 Score=156.47 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=93.1
Q ss_pred CCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026028 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 98 g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
|++++|++++||++||+||++||++|..+++.|++++++|+++|++||+|+.+.+. ..++.+++++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHH-HHcCCCCCE
Confidence 47899999999999999999999999999999999999999999999999875321 134688999999 889999999
Q ss_pred eeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC
Q 026028 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 178 l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~ 229 (244)
+.|. .+ ...+.|+ +.++|++||||++|+|++++.|.
T Consensus 90 ~~D~--~~-~~~~~~~-------------v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 ANDN--DY-ATWRAYG-------------NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EECC--ch-HHHHHhC-------------CCcCCeEEEECCCCcEEEEEecC
Confidence 9542 22 2233332 45569999999999999998874
No 30
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.90 E-value=4e-23 Score=168.15 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=101.7
Q ss_pred cccCCcccceEEEcCCCCeeecCCcCCCEEEE-EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCCh
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~ 160 (244)
+.+|+.+|+|++++.+|+....++++||++|| +||++||++|..+++.|++++++|+++|++||+||+| +.
T Consensus 7 ~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s~ 78 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------SN 78 (215)
T ss_pred ccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------CH
Confidence 45899999999999999744335589997776 7779999999999999999999999999999999998 67
Q ss_pred HHHHHHHH---H--hcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC
Q 026028 161 PEIKEFAC---T--RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 161 ~~~~~~~~---~--~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~ 229 (244)
..+++|.. + .++++||+++|.+ ..+.+.|+.+..... ....|.+||||++|+|++.+.+.
T Consensus 79 ~~h~aw~~~~~~~~~~~i~fPllsD~~---~~ia~~ygv~~~~~~------~~~~r~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 79 ISHIEWVMWIEKNLKVEVPFPIIADPM---GNVAKRLGMIHAESS------TATVRAVFIVDDKGTVRLILYYP 143 (215)
T ss_pred HHHHHHHhhHHHhcCCCCceEEEECCc---hHHHHHcCCcccccC------CceeEEEEEECCCCEEEEEEecC
Confidence 77766642 2 2468899996643 456677775432211 11239999999999999976444
No 31
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=4.5e-23 Score=166.86 Aligned_cols=129 Identities=13% Similarity=0.234 Sum_probs=100.5
Q ss_pred cCCcccceEEEcCCCCeeecCCcCC-CEEEE-EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChH
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKG-KVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~g-k~vll-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~ 161 (244)
+|+.+|+|++.+.+| .++|++++| |++|| .||++|||.|..+++.|++++++|+++|++||+||+| +.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 488999999999988 489999998 76544 7889999999999999999999999999999999998 667
Q ss_pred HHHHHHHHh------cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCC
Q 026028 162 EIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 162 ~~~~~~~~~------~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~ 230 (244)
.+.+|. +. .+++||++.|.+ ..+.+.|+.+....+ .. ...|.+||||++|+|++.+.+..
T Consensus 72 ~~~~~~-~~i~~~~~~~~~fpil~D~~---~~ia~~yg~~~~~~~----~~-~~~r~~fiID~~G~I~~~~~~~~ 137 (203)
T cd03016 72 SHIKWI-EDIEEYTGVEIPFPIIADPD---REVAKLLGMIDPDAG----ST-LTVRAVFIIDPDKKIRLILYYPA 137 (203)
T ss_pred HHHHHH-hhHHHhcCCCCceeEEECch---HHHHHHcCCccccCC----CC-ceeeEEEEECCCCeEEEEEecCC
Confidence 777776 22 689999996543 345566664432111 00 12388999999999998876543
No 32
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.89 E-value=1.1e-22 Score=162.89 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=100.8
Q ss_pred cccCCcccceEEEcCCCCeeecC--CcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLS--KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~--~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
..+|+.+|+|+++|.+|+.+++. +++||++||+||++|||+|+.++|.++++++++ ++.+++|+.| +
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------~ 114 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------T 114 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------C
Confidence 56899999999999999999995 579999999999999999999999999988653 5788999854 7
Q ss_pred hHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HH
Q 026028 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DI 238 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i 238 (244)
.+++.+|+ ++++++++.+. . . .+..+.|+ +...|++|+||++|+|+++.. ....++++ .+
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~-~--~-~~i~~~y~-------------v~~~P~~~lID~~G~I~~~g~-~~~~~~le~ll 175 (189)
T TIGR02661 115 PAEHRRFL-KDHELGGERYV-V--S-AEIGMAFQ-------------VGKIPYGVLLDQDGKIRAKGL-TNTREHLESLL 175 (189)
T ss_pred HHHHHHHH-HhcCCCcceee-c--h-hHHHHhcc-------------CCccceEEEECCCCeEEEccC-CCCHHHHHHHH
Confidence 78899999 78888877652 1 1 22333343 445599999999999988632 23445666 44
Q ss_pred HH
Q 026028 239 QK 240 (244)
Q Consensus 239 ~~ 240 (244)
+.
T Consensus 176 ~~ 177 (189)
T TIGR02661 176 EA 177 (189)
T ss_pred HH
Confidence 43
No 33
>PRK15000 peroxidase; Provisional
Probab=99.89 E-value=1.1e-22 Score=163.92 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=102.6
Q ss_pred ccCCcccceEEEcCC--CC---eeecCCc-CCCEEEEEEec-CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCC
Q 026028 83 ATEKSLYDFTVKDID--GK---DVPLSKF-KGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ 155 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~--g~---~v~L~~~-~gk~vll~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~ 155 (244)
.+|+.+|+|++++.. |+ .++|+++ +||++||+||. +||++|..++++|++++++|+++|++||+||+|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 379999999999974 44 3466666 89999999997 599999999999999999999999999999988
Q ss_pred CCCChHHHHHHHH---HhcC---CCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC
Q 026028 156 EPGSNPEIKEFAC---TRFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 156 ~~~~~~~~~~~~~---~~~~---~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~ 229 (244)
+.+.+++|.+ ++.+ ++||+++|.+ ..+.+.|+.+....+ + ..|.+||||++|+|++.+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpllsD~~---~~ia~~ygv~~~~~g------~-~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVADVK---REIQKAYGIEHPDEG------V-ALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEEECCC---cHHHHHcCCccCCCC------c-EEeEEEEECCCCEEEEEEecC
Confidence 6777777752 2333 5899996543 456677775432221 1 239999999999999988775
Q ss_pred CCh
Q 026028 230 TSP 232 (244)
Q Consensus 230 ~~~ 232 (244)
...
T Consensus 145 ~~~ 147 (200)
T PRK15000 145 LPL 147 (200)
T ss_pred CCC
Confidence 543
No 34
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.89 E-value=1.8e-22 Score=148.47 Aligned_cols=109 Identities=18% Similarity=0.311 Sum_probs=90.0
Q ss_pred cceEEEcCCCCeeecCCcC-CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 89 YDFTVKDIDGKDVPLSKFK-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 89 pdf~l~~~~g~~v~L~~~~-gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
|+|++++.+|+.++|.+++ ||++||+||++||++|+.++|.++++++++++ ++.++.|+ | ++.++..+++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7999999999999999997 99999999999999999999999999998865 48888886 3 3678888998
Q ss_pred HHhcCCC-cceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEE
Q 026028 168 CTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 168 ~~~~~~~-~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
+++++. +|++. + ....+.|+ +...|++||||++|+|+++
T Consensus 72 -~~~~~~~~p~~~--~---~~~~~~~~-------------~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 72 -KKHGLEAFPYVL--S---AELGMAYQ-------------VSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred -HHhCCCCCcEEe--c---HHHHhhcC-------------CCCcCeEEEECCCCeEEec
Confidence 788884 89873 2 12333333 4556999999999999876
No 35
>PRK13189 peroxiredoxin; Provisional
Probab=99.89 E-value=2.2e-22 Score=164.65 Aligned_cols=129 Identities=16% Similarity=0.278 Sum_probs=101.1
Q ss_pred cccCCcccceEEEcCCCCeeecCC-cCCCEEEE-EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSK-FKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~-~~gk~vll-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
+.+|+.+|+|++++.+|+ +++.+ ++||++|| +||++||++|..++++|++++++|+++|++||+||+| +
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~ 79 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------Q 79 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------C
Confidence 458999999999999985 67777 49996665 6779999999999999999999999999999999998 7
Q ss_pred hHHHHHHHHH---h--cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCC
Q 026028 160 NPEIKEFACT---R--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 160 ~~~~~~~~~~---~--~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g 228 (244)
...+.+|.+. + .+++||++.|.+ ..+.+.|+.+....++ ...|++||||++|+|++.+.+
T Consensus 80 ~~~h~aw~~~~~~~~g~~i~fPllsD~~---~~ia~~ygv~~~~~~~------~~~r~tfIID~~G~Ir~~~~~ 144 (222)
T PRK13189 80 VFSHIKWVEWIKEKLGVEIEFPIIADDR---GEIAKKLGMISPGKGT------NTVRAVFIIDPKGIIRAILYY 144 (222)
T ss_pred HHHHHHHHHhHHHhcCcCcceeEEEcCc---cHHHHHhCCCccccCC------CceeEEEEECCCCeEEEEEec
Confidence 7777777632 1 357899996543 3466777754322111 134999999999999988654
No 36
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.88 E-value=3.4e-22 Score=152.15 Aligned_cols=129 Identities=24% Similarity=0.356 Sum_probs=104.2
Q ss_pred cccceEEEcCCCCeeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHH
Q 026028 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (244)
Q Consensus 87 ~~pdf~l~~~~g~~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~ 165 (244)
.+|+|++.|.+|+.+++++++||++||+|| ++||++|..+++.|++++++|++.++.+|+|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 479999999999999999999999999999 7899999999999999999998889999999987 7788899
Q ss_pred HHHHhc-CCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCC
Q 026028 166 FACTRF-KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS 231 (244)
Q Consensus 166 ~~~~~~-~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~ 231 (244)
|+ +++ +.+|+++.|. .+ ...+.|+....... +. ....|++||||++|+|++++.|...
T Consensus 73 ~~-~~~~~~~~~~l~D~--~~-~~~~~~g~~~~~~~---~~-~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WA-EKEGGLNFPLLSDP--DG-EFAKAYGVLIEKSA---GG-GLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HH-hcccCCCceEEECC--Ch-HHHHHcCCcccccc---cc-CceeEEEEEECCCCcEEEEEecCCC
Confidence 98 677 8999999543 32 34444443222110 00 1123899999999999999988765
No 37
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.88 E-value=2.2e-22 Score=167.02 Aligned_cols=127 Identities=19% Similarity=0.257 Sum_probs=102.3
Q ss_pred cccCCcccceEEEc-CCCC--eeecCCc-CCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCC
Q 026028 82 AATEKSLYDFTVKD-IDGK--DVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (244)
Q Consensus 82 ~~~g~~~pdf~l~~-~~g~--~v~L~~~-~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~ 156 (244)
..+|+.+|||++++ .+|+ .++|+++ +||++||+|| ++|||+|..+++.|++++++|+++|++|++||.|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------ 141 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------ 141 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 46899999999988 5664 6899998 8998888888 8999999999999999999999999999999988
Q ss_pred CCChHHHHHHHHH------hcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcC
Q 026028 157 PGSNPEIKEFACT------RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 157 ~~~~~~~~~~~~~------~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~ 227 (244)
+.+.+++|.+. ..+++||++.|.+ ..+.+.|+.+.. . + ...|++||||++|+|++.+.
T Consensus 142 --s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~---~~iakayGv~~~-~----g---~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 142 --SPFSHKAWKELDVRQGGVSPLKFPLFSDIS---REVSKSFGLLRD-E----G---FSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred --CHHHHHHHHhhhhhhccccCcceEEEEcCC---hHHHHHcCCCCc-C----C---ceecEEEEECCCCEEEEEEE
Confidence 66777777632 2578899996543 446667765431 1 1 12399999999999999873
No 38
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.88 E-value=2.3e-22 Score=162.35 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=103.4
Q ss_pred cccCCcccceEEEc----CCCCeeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCC
Q 026028 82 AATEKSLYDFTVKD----IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (244)
Q Consensus 82 ~~~g~~~pdf~l~~----~~g~~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~ 156 (244)
..+|+++|||++++ .+|+.++|++++||++||+|| ++||++|..++.+|++++++|+++|++||+||.|
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------ 79 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------ 79 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence 45899999999765 466899999999999999999 5899999999999999999999999999999988
Q ss_pred CCChHHHHHHHHHh------cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCC
Q 026028 157 PGSNPEIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 157 ~~~~~~~~~~~~~~------~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~ 230 (244)
+...+.+|..+. .+++||++.|.+ ..+.+.|+.+....+ + ..|.+||||++|+|++.+.+..
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~fpll~D~~---~~ia~~ygv~~~~~g------~-~~r~~fiID~~G~i~~~~~~~~ 147 (199)
T PTZ00253 80 --SEYAHLQWTLQERKKGGLGTMAIPMLADKT---KSIARSYGVLEEEQG------V-AYRGLFIIDPKGMLRQITVNDM 147 (199)
T ss_pred --CHHHHHHHHhChHhhCCccccccceEECcH---hHHHHHcCCcccCCC------c-eEEEEEEECCCCEEEEEEecCC
Confidence 566666664211 147899996533 456677775433211 1 2389999999999999876644
No 39
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.88 E-value=1.3e-22 Score=154.67 Aligned_cols=106 Identities=10% Similarity=0.147 Sum_probs=81.5
Q ss_pred CeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC-------CeEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026028 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-------GFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (244)
Q Consensus 99 ~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-------~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~ 171 (244)
+.++|++++||+|+|+|||+|||+|+.++|.|+++|++++++ +++||+|+.| ++.+++++|+ ++.
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~-~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFL-KDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHH-HHC
Confidence 356788999999999999999999999999999999988753 6999999987 3567788998 777
Q ss_pred CCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEE
Q 026028 172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 172 ~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
+++|+.+...+..+..+.+.|+ +..+|++||||++|+|+.+
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~-------------v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFS-------------VEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCCceeecccchHHHHHHHHcC-------------CCCCCEEEEECCCCcEEee
Confidence 8776543222211112222222 5566999999999999987
No 40
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.88 E-value=5.7e-22 Score=178.32 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=108.6
Q ss_pred cccCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChH
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~ 161 (244)
...++.+|+|++.|.+|+.+.++ +||+|||+||++||++|+.++|.|++++++++..+++||+|+++... ..++.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~--~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL--HEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc--ccccHH
Confidence 45678899999999999999988 89999999999999999999999999999998778999999975321 123456
Q ss_pred HHHHHHHHhcCC-CcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHH
Q 026028 162 EIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQ 239 (244)
Q Consensus 162 ~~~~~~~~~~~~-~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~ 239 (244)
++.+|. +..+. ++|++. |.++ .+.+.|+ |..+|+++|||++|+|+.++.|..+.++++ .|+
T Consensus 108 ~~~~~~-~~~~y~~~pV~~--D~~~-~lak~fg-------------V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWY-AGLDYPKLPVLT--DNGG-TLAQSLN-------------ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHH-HhCCCcccceec--cccH-HHHHHcC-------------CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 677777 44443 467773 3222 2223332 566799999999999999999999988888 666
No 41
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.87 E-value=4.7e-22 Score=152.82 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=97.8
Q ss_pred cccceEEEcCCCCeeecCCcC-CCEEEEE-EecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHH
Q 026028 87 SLYDFTVKDIDGKDVPLSKFK-GKVLLIV-NVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (244)
Q Consensus 87 ~~pdf~l~~~~g~~v~L~~~~-gk~vll~-F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~ 164 (244)
.+|+|+++|.+|+.++++++. +|++||. ||++|||+|+.+++.|+++++++++.|++||+|+.| +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 479999999999999999875 4655554 469999999999999999999999999999999987 566677
Q ss_pred HHHHHhcCCCcceeeecCCCCCCchhhHHHhhhcc-----------------CCCcCCccccceeEEEECCCCcEEEEcC
Q 026028 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA-----------------GGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 165 ~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~P~~~lID~~G~I~~~~~ 227 (244)
+|. ++++++||++.|.+ ....+.|+...... ++. .......|++||||++|+|++.+.
T Consensus 73 ~~~-~~~~~~~p~~~D~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 73 AFD-KGKFLPFPVYADPD---RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGND-EGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred HHH-HhcCCCCeEEECCc---hhHHHHcCceecCcHHHHHHHHhhCcccccccCC-CCcccccceEEEECCCCeEEEEec
Confidence 787 78899999995533 23444444321110 011 111234599999999999999987
Q ss_pred C
Q 026028 228 P 228 (244)
Q Consensus 228 g 228 (244)
|
T Consensus 148 ~ 148 (149)
T cd02970 148 D 148 (149)
T ss_pred C
Confidence 6
No 42
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=8e-22 Score=192.28 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=117.6
Q ss_pred ccccCCcccceEEEc--CCCCeeec-CCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKD--IDGKDVPL-SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~--~~g~~v~L-~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~ 157 (244)
....|+.+|+|...+ .+|+++++ ++++||+|||+||++||++|+.++|.|++++++|++++++||+|+++.+ +..
T Consensus 390 ~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~--D~~ 467 (1057)
T PLN02919 390 SKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF--DNE 467 (1057)
T ss_pred ccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc--ccc
Confidence 345699999999877 68999998 5899999999999999999999999999999999999999999986532 122
Q ss_pred CChHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-
Q 026028 158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE- 236 (244)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~- 236 (244)
++.+++++++ ++++++||++.|. ++ ...+.|+ |..+|+++|||++|+|++++.|....++++
T Consensus 468 ~~~~~~~~~~-~~~~i~~pvv~D~--~~-~~~~~~~-------------V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~ 530 (1057)
T PLN02919 468 KDLEAIRNAV-LRYNISHPVVNDG--DM-YLWRELG-------------VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDD 530 (1057)
T ss_pred ccHHHHHHHH-HHhCCCccEEECC--ch-HHHHhcC-------------CCccceEEEECCCCeEEEEEecccCHHHHHH
Confidence 3567888888 7899999998542 22 1222222 566799999999999999999988888888
Q ss_pred HHHHHHh
Q 026028 237 DIQKLVV 243 (244)
Q Consensus 237 ~i~~lL~ 243 (244)
.|+++|.
T Consensus 531 ~l~~~l~ 537 (1057)
T PLN02919 531 LVEAALQ 537 (1057)
T ss_pred HHHHHHH
Confidence 8877753
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.87 E-value=1.3e-21 Score=145.83 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=100.5
Q ss_pred cceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHH
Q 026028 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC 168 (244)
Q Consensus 89 pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~ 168 (244)
|+|++++++|+.+++.+++||++||+||++||++|+.+++.|++++++ +.+++|+.| .++.+++.+|+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~------~~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALR------SGDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEcc------CCCHHHHHHHH-
Confidence 799999999999999999999999999999999999999999999876 578888877 34688999999
Q ss_pred HhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 169 ~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
++++++||++.| .+ ....+.|+ |.+.|+++|||++| |++++.|..++++++
T Consensus 69 ~~~~~~~~~~~d--~~-~~~~~~~~-------------i~~~P~~~vid~~g-i~~~~~g~~~~~~~~ 119 (123)
T cd03011 69 QKKGYGFPVIND--PD-GVISARWG-------------VSVTPAIVIVDPGG-IVFVTTGVTSEWGLR 119 (123)
T ss_pred HHcCCCccEEEC--CC-cHHHHhCC-------------CCcccEEEEEcCCC-eEEEEeccCCHHHHH
Confidence 788999999854 22 22333333 56669999999999 999999999888775
No 44
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3e-21 Score=150.42 Aligned_cols=128 Identities=22% Similarity=0.366 Sum_probs=110.0
Q ss_pred cccCCcccceEEEcC-CCC---eeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCC
Q 026028 82 AATEKSLYDFTVKDI-DGK---DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~-~g~---~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~ 156 (244)
..+|+++|+|+.... .|. +++++++.||++||+|| +.+.+.|..++..++++|++|+++|++||+||+|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------ 76 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------ 76 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence 348999999999998 774 89999998999999999 8999999999999999999999999999999998
Q ss_pred CCChHHHHHHHHH---hcC---CCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcC
Q 026028 157 PGSNPEIKEFACT---RFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 157 ~~~~~~~~~~~~~---~~~---~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~ 227 (244)
+...+.+|... ..+ ++||++.|.+ .++.+.|+.+....|..+ +.+||||++|+|++...
T Consensus 77 --s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~---~~vs~~ygvl~~~~g~a~-------R~~FIIDp~g~ir~~~v 141 (194)
T COG0450 77 --SVFSHKAWKATIREAGGIGKIKFPMIADPK---GEIARAYGVLHPEEGLAL-------RGTFIIDPDGVIRHILV 141 (194)
T ss_pred --cHHHHHHHHhcHHhcCCccceecceEEcCc---hhHHHHcCCcccCCCcce-------eEEEEECCCCeEEEEEE
Confidence 88999999844 455 7899996644 458889998876555332 88999999999997643
No 45
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.86 E-value=3.4e-21 Score=149.37 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=106.1
Q ss_pred cCCcccceEEEcCC---CCeeecCC-cCCCEEEEEEe-cCCCCCCHHh-HHHHHHHHHHhhcCCe-EEEEEecCCCCCCC
Q 026028 84 TEKSLYDFTVKDID---GKDVPLSK-FKGKVLLIVNV-ASRCGLTPSN-YSELSHLYEKYKTQGF-EILAFPCNQFGGQE 156 (244)
Q Consensus 84 ~g~~~pdf~l~~~~---g~~v~L~~-~~gk~vll~F~-~~~C~~C~~~-~~~l~~l~~~~~~~~~-~vi~Vs~D~~~~~~ 156 (244)
+|+.+|+|++++.+ |+.++|++ ++||++||.|| +.|||.|..+ ++.+++.+++|++.|+ +|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58999999999986 99999999 58987777666 9999999999 9999999999999998 69999988
Q ss_pred CCChHHHHHHHHHhcCC--CcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCC
Q 026028 157 PGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS 231 (244)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~ 231 (244)
+.+.+++|+ +++++ +||+++|.+ ..+.+.|+.+..... .+......+.+|||| +|+|++.+.....
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lLsD~~---~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFLADGN---GEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEEECCC---HHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 899999999 77787 899996643 457777876543220 010011238899999 7999998765543
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.85 E-value=7e-21 Score=138.79 Aligned_cols=116 Identities=31% Similarity=0.533 Sum_probs=98.7
Q ss_pred ceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026028 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT 169 (244)
Q Consensus 90 df~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~ 169 (244)
+|++.+.+|+.+++.+++||++||+||++||+.|+..++.|.++++++++.++.+++|++|. ++.+.+++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHH-H
Confidence 57899999999999999999999999999999999999999999999987789999999982 1489999999 7
Q ss_pred hcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCC
Q 026028 170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 170 ~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g 228 (244)
+++.+++++.|. .....+.|+ +.+.|+++|+|++|+|++++.|
T Consensus 74 ~~~~~~~~~~~~---~~~~~~~~~-------------~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVLLDP---DGELAKAYG-------------VRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceEEcC---cchHHHhcC-------------cCccceEEEECCCCcEEEEecC
Confidence 888999998543 233444443 4456999999999999999865
No 47
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.84 E-value=9.6e-21 Score=149.27 Aligned_cols=133 Identities=22% Similarity=0.252 Sum_probs=98.6
Q ss_pred cccccCCcccceEEEcC-----CC-----CeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEE-----
Q 026028 80 ATAATEKSLYDFTVKDI-----DG-----KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI----- 144 (244)
Q Consensus 80 ~~~~~g~~~pdf~l~~~-----~g-----~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~v----- 144 (244)
.....|+++|..++.|- +| +.++.++++||+.||+|||+||++|+.+.|.|.++ +++|+.+
T Consensus 21 ~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 21 HNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 34567888888877664 33 56778889999999999999999999999999999 4567888
Q ss_pred -EEEecCCCCCCCCCChHHHHHHHHHhcCCCcc---eeeecCCCCCCchhhHHHhhhccCCCcCCccccceeE-EEECCC
Q 026028 145 -LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP---IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEK-FLVDKN 219 (244)
Q Consensus 145 -i~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p---~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~-~lID~~ 219 (244)
++|+.|+ ...+...-++.|+ ++.+..|| ++ .|.++. ....|+ +...|++ ||||++
T Consensus 97 t~~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vl--lD~~g~-v~~~~g-------------v~~~P~T~fVIDk~ 156 (184)
T TIGR01626 97 TTIINADD---AIVGTGMFVKSSA-KKGKKENPWSQVV--LDDKGA-VKNAWQ-------------LNSEDSAIIVLDKT 156 (184)
T ss_pred eEEEECcc---chhhHHHHHHHHH-HHhcccCCcceEE--ECCcch-HHHhcC-------------CCCCCceEEEECCC
Confidence 9999872 0011223355566 66788888 77 443332 333443 4555888 899999
Q ss_pred CcEEEEcCCCCChhhHH
Q 026028 220 GKVIERYPPTTSPFQIE 236 (244)
Q Consensus 220 G~I~~~~~g~~~~~~l~ 236 (244)
|+|++++.|..++++++
T Consensus 157 GkVv~~~~G~l~~ee~e 173 (184)
T TIGR01626 157 GKVKFVKEGALSDSDIQ 173 (184)
T ss_pred CcEEEEEeCCCCHHHHH
Confidence 99999999999888766
No 48
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.84 E-value=5e-20 Score=132.77 Aligned_cols=108 Identities=68% Similarity=1.222 Sum_probs=100.4
Q ss_pred ccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 88 ~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
+.||++.|++|++++|++|+||++||.-.|+.|+.-. +...|++|+++|+++|++|+++.+++|+.+++++.+++++++
T Consensus 1 iYdf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 1 IYDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred CcceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 3589999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcceeeecCCCCCCchhhHHHhh
Q 026028 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196 (244)
Q Consensus 168 ~~~~~~~~p~l~d~d~~~~~~~~~~~~~~ 196 (244)
..+++.+||++...+++|....++|.+++
T Consensus 80 ~~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 80 KEKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp CHCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred HhccCCcccceEEEEecCCCCcHHHHHhC
Confidence 76699999999999999999999999874
No 49
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.84 E-value=1.4e-20 Score=147.50 Aligned_cols=120 Identities=15% Similarity=0.240 Sum_probs=92.3
Q ss_pred cCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHH
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~ 163 (244)
.....|+|++. +|+.+++++++ ||+||++|||+|+.++|.|++++++| |++|++|++|. ..
T Consensus 51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~~--- 111 (181)
T PRK13728 51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------QG--- 111 (181)
T ss_pred CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------CC---
Confidence 45577888885 99999999998 77799999999999999999999997 49999999872 11
Q ss_pred HHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEE-EEcCCCCChhhHH-HHHHH
Q 026028 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~-~~~~g~~~~~~l~-~i~~l 241 (244)
...||++. |..+......|+. .+..+|++||||++|+++ ..+.|..+.++++ .|+++
T Consensus 112 --------~~~fPv~~--dd~~~~~~~~~g~-----------~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 112 --------DTAFPEAL--PAPPDVMQTFFPN-----------IPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred --------CCCCceEe--cCchhHHHHHhCC-----------CCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence 25789884 2111112222220 013559999999999997 4799999999999 89888
Q ss_pred Hh
Q 026028 242 VV 243 (244)
Q Consensus 242 L~ 243 (244)
++
T Consensus 171 l~ 172 (181)
T PRK13728 171 LQ 172 (181)
T ss_pred Hh
Confidence 75
No 50
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.83 E-value=7.6e-21 Score=143.67 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=82.4
Q ss_pred CC-CeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC--CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 97 DG-KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 97 ~g-~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
|| +++++++++||++||+||++||++|+.+++.|++++++++++ +++|++|++|. +.+++.+|+ ++++
T Consensus 5 ~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~- 75 (132)
T cd02964 5 DGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP- 75 (132)
T ss_pred cCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC-
Confidence 44 489999999999999999999999999999999999999875 79999999982 567888898 6665
Q ss_pred CcceeeecCCC-CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcC
Q 026028 174 EFPIFDKVDVN-GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 174 ~~p~l~d~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~ 227 (244)
.+..+...|.. .....+.|+ +..+|+++|||++|+|+++..
T Consensus 76 ~~~~~~~~d~~~~~~~~~~~~-------------v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 76 PWLAVPFEDEELRELLEKQFK-------------VEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CeEeeccCcHHHHHHHHHHcC-------------CCCCCEEEEECCCCCEEchhH
Confidence 44443211100 011112222 566699999999999987753
No 51
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.82 E-value=1.7e-20 Score=141.42 Aligned_cols=111 Identities=21% Similarity=0.360 Sum_probs=82.0
Q ss_pred EEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC--CeEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026028 93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (244)
Q Consensus 93 l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~ 170 (244)
+.|.+|+.++|++++||++||+||++||++|+.++|.|++++++++++ +++|++|++|. +.++..++. ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence 568899999999999999999999999999999999999999999865 69999999982 456677776 44
Q ss_pred cCC-CcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEc
Q 026028 171 FKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 171 ~~~-~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~ 226 (244)
++. .+|+.. .+ ....+.+.|+ +..+|+++|||++|+|+.+.
T Consensus 75 ~~~~~~~~~~-~~-~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 75 MPWLAVPFSD-RE-RRSRLNRTFK-------------IEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCeeEcccCC-HH-HHHHHHHHcC-------------CCCCCEEEEECCCCCEEccc
Confidence 321 111110 00 0011122222 55669999999999998763
No 52
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.81 E-value=1.1e-19 Score=143.65 Aligned_cols=140 Identities=21% Similarity=0.325 Sum_probs=106.3
Q ss_pred cCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCC-CCHHhHHHHHHHHHHhhcC--CeEEEEEecCCCCCCCCCCh
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~-~C~~~~~~l~~l~~~~~~~--~~~vi~Vs~D~~~~~~~~~~ 160 (244)
.....|+|+|.|++|+.+++++++||++||.|..+.|| .|+..+..|++++++++++ .+++|.||+| |+.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 56678999999999999999999999999999999998 8999999999999998874 5999999999 788999
Q ss_pred HHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhcc---CCCcCCccccceeEEEECCCCcEEEEcCC
Q 026028 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~~P~~~lID~~G~I~~~~~g 228 (244)
+.+++|+ +.++.++..|......-..+.+.|+..-... .......+.|...+|||||+|+|+..|.+
T Consensus 104 ~~L~~Y~-~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHH-HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHH-HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999 7888888777432211111222233221111 12223467888999999999999999865
No 53
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=140.61 Aligned_cols=150 Identities=22% Similarity=0.364 Sum_probs=119.3
Q ss_pred ceEEEcCCCCeeecCCcCCCEEEEEEecCCCC-CCHHhHHHHHHHHHHhh---cCCeEEEEEecCCCCCCCCCChHHHHH
Q 026028 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYK---TQGFEILAFPCNQFGGQEPGSNPEIKE 165 (244)
Q Consensus 90 df~l~~~~g~~v~L~~~~gk~vll~F~~~~C~-~C~~~~~~l~~l~~~~~---~~~~~vi~Vs~D~~~~~~~~~~~~~~~ 165 (244)
+|+++|++|+.+++.+++||++||+|..|.|| .|...+..|.+++++.. ..+++++.|++| |++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 89999999999999999999999999999999 99999999999999998 335999999999 88999999999
Q ss_pred HHHH-hcCCCcceeeecCCCCCCchhhHHHhhhccC--CCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHH
Q 026028 166 FACT-RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 166 ~~~~-~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
|+ + .+...|..+.......+.+.+.|+....... +...+.+.|...+||||++|+++..+.+..+++++. .|+++
T Consensus 125 Y~-~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 125 YA-ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred Hh-cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 99 5 4455555554322222334444544421111 112457888999999999999999998888888888 99998
Q ss_pred HhC
Q 026028 242 VVA 244 (244)
Q Consensus 242 L~~ 244 (244)
+++
T Consensus 204 ~~~ 206 (207)
T COG1999 204 LKE 206 (207)
T ss_pred hhc
Confidence 863
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.77 E-value=3.8e-19 Score=126.51 Aligned_cols=94 Identities=23% Similarity=0.283 Sum_probs=70.2
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhh-cCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~-~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
||+++|+||++||++|..+++.|.+++++|+ +.+++||+|+.| ++.++.+++. ++++.++..+...+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 70 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFL-KKNNFPWYNVPFDDDN-- 70 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHH-HTCTTSSEEEETTTHH--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHH-HhcCCCceEEeeCcch--
Confidence 7999999999999999999999999999999 556999999998 3678888888 6666666665322111
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcE
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV 222 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I 222 (244)
...+...+ .|..+|+++|||++|+|
T Consensus 71 -~~~l~~~~----------~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 -NSELLKKY----------GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp -HHHHHHHT----------T-TSSSEEEEEETTSBE
T ss_pred -HHHHHHHC----------CCCcCCEEEEECCCCCC
Confidence 11222211 26667999999999997
No 55
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.1e-18 Score=128.47 Aligned_cols=143 Identities=22% Similarity=0.332 Sum_probs=115.3
Q ss_pred ccccCCcccceEEEcCCCCeeecCCcCCC-EEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g~~v~L~~~~gk-~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~ 158 (244)
.+.+|+.+|||+|+|.||+.++|.++.|+ +||++|| +...|.|..+...+++-|++++..+.+|++++.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 56799999999999999999999999886 8888888 7889999999999999999999999999999988
Q ss_pred ChHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhh-HH-
Q 026028 159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ-IE- 236 (244)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~-l~- 236 (244)
+....++|. .+++++|.+++| . +.++.+.++.-+...|+..+ +..||+|++|.....+.....|+. +.
T Consensus 134 ~s~sqKaF~-sKqnlPYhLLSD--p-k~e~ik~lGa~k~p~gg~~~------Rsh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 134 DSASQKAFA-SKQNLPYHLLSD--P-KNEVIKDLGAPKDPFGGLPG------RSHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred chHHHHHhh-hhccCCeeeecC--c-chhHHHHhCCCCCCCCCccc------ceEEEEecCCeEEEEEecccCccccHHH
Confidence 778889998 889999999954 3 34456666655544444332 789999999887777766666653 43
Q ss_pred HHHHH
Q 026028 237 DIQKL 241 (244)
Q Consensus 237 ~i~~l 241 (244)
.++.+
T Consensus 204 a~k~~ 208 (211)
T KOG0855|consen 204 ALKFL 208 (211)
T ss_pred HHHHH
Confidence 44443
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.73 E-value=8.7e-18 Score=129.47 Aligned_cols=108 Identities=14% Similarity=0.233 Sum_probs=74.4
Q ss_pred CCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026028 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 98 g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
|+.+.++++ .||+||++||++|+.++|.|++++++| +++|++|++|. .. . + .||.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~--------~~-~-----~----~fp~ 98 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG--------QG-L-----T----GFPD 98 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC--------Cc-c-----c----cccc
Confidence 566666554 499999999999999999999999987 48899999872 11 0 1 3444
Q ss_pred eeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcE-EEEcCCCCChhhHH-HHHHHH
Q 026028 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 178 l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I-~~~~~g~~~~~~l~-~i~~lL 242 (244)
. .+.........|+. ..+...|++||||++|++ +.++.|..+.++++ .|+++|
T Consensus 99 ~--~~~~~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 P--LPATPEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred c--cCCchHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 3 22111111111110 024566999999999886 55789999998888 887765
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.70 E-value=3.9e-17 Score=124.80 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=83.2
Q ss_pred EEEcCCCCeeecCCc--CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026028 92 TVKDIDGKDVPLSKF--KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT 169 (244)
Q Consensus 92 ~l~~~~g~~v~L~~~--~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~ 169 (244)
++++++++...+++. +||++||+||++||++|+.+.|.|.+++++|++. +.++.|.+|. . ...+.+ +
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~--------~-~~~~~~-~ 70 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN--------P-KWLPEI-D 70 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC--------c-ccHHHH-H
Confidence 345566666666553 7899999999999999999999999999999765 8899998761 1 112222 3
Q ss_pred hcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 170 ~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
+|+ |..+|+++++|++|+++.++.|..+.++++ .|+++++
T Consensus 71 ~~~----------------------------------V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 71 RYR----------------------------------VDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred HcC----------------------------------CCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 322 334499999999999999999999888898 8888875
No 58
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.8e-16 Score=117.52 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=106.0
Q ss_pred ccCCcccceEEEc-CCC--CeeecCCcCCCEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCC
Q 026028 83 ATEKSLYDFTVKD-IDG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 83 ~~g~~~pdf~l~~-~~g--~~v~L~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~ 158 (244)
.+.+++|+|+-+. ++| +.++|++|+||+|++.|| ..+.-.|+.++-.+.+.+++|++.|.+||++|+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D-------- 76 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD-------- 76 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence 3556678987766 466 689999999999999999 7888999999999999999999999999999998
Q ss_pred ChHHHHHHHH---HhcC---CCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCC
Q 026028 159 SNPEIKEFAC---TRFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 159 ~~~~~~~~~~---~~~~---~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g 228 (244)
+...+.+|++ ++.+ +++|+++|.. .++.+.|+.+....|..+ +.+||||++|.+++.-..
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD~~---~~IsrdyGvL~~~~G~~l-------RglfIId~~gi~R~it~N 142 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLN---HEISRDYGVLKEDEGIAL-------RGLFIIDPDGILRQITIN 142 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeeccc---hhhHHhcCceecCCCcce-------eeeEEEccccceEEeeec
Confidence 8999999983 3444 4599996543 458899999988777544 779999999999885433
No 59
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.62 E-value=2.6e-15 Score=121.19 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=112.3
Q ss_pred cceEEEcCCCCeeecCCcCCCEEEEEEecCCCC-CCHHhHHHHHHHHHHhhcC-C--eEEEEEecCCCCCCCCCChHHHH
Q 026028 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ-G--FEILAFPCNQFGGQEPGSNPEIK 164 (244)
Q Consensus 89 pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~-~C~~~~~~l~~l~~~~~~~-~--~~vi~Vs~D~~~~~~~~~~~~~~ 164 (244)
-+|+|.|.+|+.++-.|++|||+||+|-.++|| .|+.++..|.+..++.+++ | +.-|.|++| +++|+.+.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 589999999999999999999999999999999 9999999999999988776 3 335899999 8899999999
Q ss_pred HHHHHhcCCCcceeeecCCCCCCchhhHHHhhhc-cCC-CcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHH
Q 026028 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS-AGG-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 165 ~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
+|+ ++|+...--+...-.+-..+.+.|.+.-.. ... -.++.|.|.=.+|||||+|+.+..|.-.-+++++. .|.+.
T Consensus 196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 999 787765444422111112334444432211 111 23445777778999999999999887666888887 66554
Q ss_pred H
Q 026028 242 V 242 (244)
Q Consensus 242 L 242 (244)
+
T Consensus 275 v 275 (280)
T KOG2792|consen 275 V 275 (280)
T ss_pred H
Confidence 4
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=5.6e-15 Score=106.74 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=66.2
Q ss_pred CcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCC
Q 026028 105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 105 ~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
+.+||+|||+||++||++|+.+.|.|+++++++ .++.++.|+.| ......+++ ++++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d--------~~~~~~~l~-~~~~------------ 68 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGD--------ENDSTMELC-RREK------------ 68 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECC--------CChHHHHHH-HHcC------------
Confidence 446899999999999999999999999999999 34889999887 223334555 4433
Q ss_pred CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHH
Q 026028 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQ 239 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~ 239 (244)
|...|+++++ ++|+++.++.|.. ++++. .+.
T Consensus 69 ----------------------V~~~Pt~~~~-~~G~~v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 69 ----------------------IIEVPHFLFY-KDGEKIHEEEGIG-PDELIGDVL 100 (103)
T ss_pred ----------------------CCcCCEEEEE-eCCeEEEEEeCCC-HHHHHHHHH
Confidence 3334985555 9999999999955 55555 443
No 61
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-14 Score=108.86 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++||||+|||.||++|+...|.|+++..+|+++ +++.-|++|. .-+.+ .+|+
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-----------~~ela-~~Y~-------------- 112 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-----------HPELA-EDYE-------------- 112 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-----------ccchH-hhcc--------------
Confidence 4679999999999999999999999999999776 9999998771 12333 3433
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHhC
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVVA 244 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~~ 244 (244)
|...|+++++ ++|..+.++.|..+.+.++ .|+++|+.
T Consensus 113 --------------------I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~~ 150 (150)
T KOG0910|consen 113 --------------------ISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLKL 150 (150)
T ss_pred --------------------eeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhcC
Confidence 3444988888 8999999999999999999 99998863
No 62
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=109.81 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=89.9
Q ss_pred eEEEcCCCCeeecC-CcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC--eEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 91 FTVKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 91 f~l~~~~g~~v~L~-~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
..+...+|..+..+ .++||+|.++|-+.|||+|+...|.|.++|++.++.+ ++||.||.| .+.+++.+|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence 56788888888777 5799999999999999999999999999999998764 999999998 3778888888
Q ss_pred HHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEE
Q 026028 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 168 ~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
..++.+|..+-..|...++....|. +..+|...+++++|+++..
T Consensus 88 -~~~~~~W~~iPf~d~~~~~l~~ky~-------------v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 88 -LEHHGDWLAIPFGDDLIQKLSEKYE-------------VKGIPALVILKPDGTVVTE 131 (157)
T ss_pred -HhcCCCeEEecCCCHHHHHHHHhcc-------------cCcCceeEEecCCCCEehH
Confidence 6667777666433322222222332 6667999999999988765
No 63
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.48 E-value=2.5e-13 Score=97.92 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=64.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.|+++||+||++||++|+.+.|.|.++++++++..+.++.|..| .. +.+ ++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~----~~~-~~~~-------------- 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TI----DTL-KRYR-------------- 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CH----HHH-HHcC--------------
Confidence 57899999999999999999999999999998666788888765 22 222 3333
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
|...|+++++ ++|+++.+..|. +++++. .|++
T Consensus 69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 69 --------------------GKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred --------------------CCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhh
Confidence 2333865555 799999999885 566666 6665
No 64
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.47 E-value=2.7e-13 Score=99.23 Aligned_cols=88 Identities=13% Similarity=0.034 Sum_probs=69.5
Q ss_pred cCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCC
Q 026028 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 106 ~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
.+|+++||+||++||++|+...|.+.++.+++++.++.++.|++| ... ..+ ++++
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--------~~~---~l~-~~~~------------- 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--------HER---RLA-RKLG------------- 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--------ccH---HHH-HHcC-------------
Confidence 468999999999999999999999999999998767889999876 221 222 3322
Q ss_pred CCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
|.++|+++++ ++|+++.++.|..+.+++. .|++
T Consensus 77 ---------------------V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 77 ---------------------AHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ---------------------CccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhc
Confidence 3344999999 5999999999988777776 6655
No 65
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.7e-13 Score=100.71 Aligned_cols=133 Identities=14% Similarity=0.240 Sum_probs=101.2
Q ss_pred ccccCCcccceEEEcCCCCeeecCCcCCC-EEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g~~v~L~~~~gk-~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~ 158 (244)
.+..|+.+|+|+..+..|+ +++.||-|. |.||+-. +.+.|.|..++..+.+++.+|.++|+++|++|+|
T Consensus 5 ~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d-------- 75 (224)
T KOG0854|consen 5 RLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD-------- 75 (224)
T ss_pred cccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------
Confidence 3558999999999888776 788998876 6666444 8899999999999999999999999999999998
Q ss_pred ChHHHHHHHHH------h--cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEc
Q 026028 159 SNPEIKEFACT------R--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 159 ~~~~~~~~~~~------~--~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~ 226 (244)
+.+.++.|+++ . +.++||++.|. + .+.+-+|+.+.....+..+.+. -.+..||||++.+|+-.+
T Consensus 76 ~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~--~-rela~~l~MlD~~e~~~~~~~~-T~Ravfvi~pdkKirLs~ 147 (224)
T KOG0854|consen 76 DVESHKDWIKDIKSYAKVKNHSVPYPIIADP--N-RELAFLLNMLDPEEKKNIGDGK-TVRAVFVIDPDKKIRLSF 147 (224)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeecCC--c-hhhhhhhcccCHhHcCCCCCCc-eEEEEEEECCCceEEEEE
Confidence 67777777631 1 34789999543 3 4466677766654443333322 237899999999998654
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.47 E-value=3.9e-13 Score=100.39 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=71.6
Q ss_pred CC-CEEEEEEecCCCCCCHHhHHHHH---HHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecC
Q 026028 107 KG-KVLLIVNVASRCGLTPSNYSELS---HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 107 ~g-k~vll~F~~~~C~~C~~~~~~l~---~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
+| |++||+||++||++|+.+.+.+. ++.+.+++ ++.++.|++|. ...+..|- . ..
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~--------~~~~~~~~--~----------~~ 70 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG--------DKEVTDFD--G----------EA 70 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC--------CceeeccC--C----------CC
Confidence 57 89999999999999999998875 56666654 58889998872 11111110 0 00
Q ss_pred CCCCCchhhHHHhhhccCCCcCCccccceeEEEECCC-CcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~-G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
.........|+ |..+|+++++|++ |+++.++.|..+.+++. .|+.+++
T Consensus 71 ~~~~~l~~~~~-------------v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 71 LSEKELARKYR-------------VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccHHHHHHHcC-------------CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 00011111121 4556999999999 89999999999888888 8888775
No 67
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.46 E-value=3e-13 Score=97.71 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=68.5
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHH---HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
.||++||.||++||++|+...+.+ .++.+++++ ++.++.|.++. +.+...+++ ++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~~~----------- 69 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KRFG----------- 69 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HHcC-----------
Confidence 578999999999999999998887 578888876 68999998762 222234444 4433
Q ss_pred CCCCchhhHHHhhhccCCCcCCccccceeEEEECC-CCcEEEEcCCCCChhhHH-HH
Q 026028 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIE-DI 238 (244)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~-~G~I~~~~~g~~~~~~l~-~i 238 (244)
|..+|+++++++ +|+++.++.|..+.+++. .|
T Consensus 70 -----------------------i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 70 -----------------------VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred -----------------------CCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 233499999999 999999999998888776 44
No 68
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.45 E-value=1.6e-13 Score=115.46 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=76.6
Q ss_pred CeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 99 ~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
+...+++++|+++||+||++||++|+.+.|.|++++++| |++|++|++|. ... ..||.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~~ 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPNA 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCcc
Confidence 346788899999999999999999999999999999987 48999999982 110 014443
Q ss_pred eecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCC-CcEEEEcCCCCChhhHH-HHHHH
Q 026028 179 DKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 179 ~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~-G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
. + + ......| +|..+|++||+|++ |++.....|..+.++++ .|..+
T Consensus 216 ~--~-d-~~la~~~-------------gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 216 R--P-D-AGQAQQL-------------KIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred c--C-C-HHHHHHc-------------CCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 1 1 1 1112222 26667999999995 66666677988888888 66554
No 69
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=3e-13 Score=97.17 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=61.7
Q ss_pred CCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCC
Q 026028 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 104 ~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
.+++||++||+||++||++|+.+.|.+.++.+++++ +.++.|..| + .....+ ++++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~--------~--~~~~l~-~~~~----------- 69 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEES--------S--IKPSLL-SRYG----------- 69 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECC--------C--CCHHHH-HhcC-----------
Confidence 457999999999999999999999999999999964 778887543 0 011222 2322
Q ss_pred CCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|.+.|+++++++ | .+.++.|..+.+++.
T Consensus 70 -----------------------V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~ 97 (100)
T cd02999 70 -----------------------VVGFPTILLFNS-T-PRVRYNGTRTLDSLA 97 (100)
T ss_pred -----------------------CeecCEEEEEcC-C-ceeEecCCCCHHHHH
Confidence 344599999964 5 678899987766554
No 70
>PHA02278 thioredoxin-like protein
Probab=99.43 E-value=7.8e-13 Score=95.30 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=64.8
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+++++||+||++||++|+...|.+.++.+++... +.++.|.+|. +.. ...+.+ ++++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~------~~~-d~~~l~-~~~~-------------- 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDA------EDV-DREKAV-KLFD-------------- 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCc------ccc-ccHHHH-HHCC--------------
Confidence 5789999999999999999999999998875443 6788888872 110 012233 3332
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEDIQ 239 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~~i~ 239 (244)
|.+.|+++++ ++|+++.+..|..+.+++..++
T Consensus 70 --------------------I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 70 --------------------IMSTPVLIGY-KDGQLVKKYEDQVTPMQLQELE 101 (103)
T ss_pred --------------------CccccEEEEE-ECCEEEEEEeCCCCHHHHHhhh
Confidence 3344987766 7899999999988777766443
No 71
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.42 E-value=1.1e-12 Score=93.18 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=65.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+|+++||+||++||++|+.+.+.++++.+.+.+. +.++.|++| .. .+.+ ++++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~--------~~---~~l~-~~~~-------------- 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCD--------AQ---PQIA-QQFG-------------- 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEecc--------CC---HHHH-HHcC--------------
Confidence 5789999999999999999999999999999764 888888876 22 2233 3333
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|...|++++++ +|+++.++.|..+.++++
T Consensus 64 --------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~ 92 (96)
T cd02956 64 --------------------VQALPTVYLFA-AGQPVDGFQGAQPEEQLR 92 (96)
T ss_pred --------------------CCCCCEEEEEe-CCEEeeeecCCCCHHHHH
Confidence 23339999996 999999999988777766
No 72
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.6e-12 Score=96.03 Aligned_cols=126 Identities=22% Similarity=0.245 Sum_probs=97.4
Q ss_pred ccccCCcccceEEEcCCCCeeecCCcCCCEEEE-EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
.+++|+++|+|++.+.+.+.++|.++.||..+| .|..-..|.|..+...+++...++.+ +.|+.||.| -
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------L 86 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------L 86 (158)
T ss_pred CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------C
Confidence 366999999999999999999999999985555 56688999999999999999998865 799999998 8
Q ss_pred hHHHHHHHHHhcCCC-cceeeecCCCCCCchhhHHHhhhccC--CCcCCccccceeEEEECCCCcEEEE
Q 026028 160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~-~p~l~d~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
+..+.+|+ ...++. ...++ |.......+.|+.+..+.. |.+. +..|++|.+|+|+|.
T Consensus 87 PFAq~RfC-~aeGi~nv~~lS--d~r~~~Fge~yGv~I~egpL~gLlA------RaV~V~De~g~V~y~ 146 (158)
T COG2077 87 PFAQKRFC-GAEGIENVITLS--DFRDRAFGENYGVLINEGPLAGLLA------RAVFVLDENGKVTYS 146 (158)
T ss_pred hhHHhhhh-hhcCcccceEhh--hhhhhhhhHhhCEEeccccccCeee------eEEEEEcCCCcEEEE
Confidence 99999999 566765 55553 3333334455654433221 2221 789999999999886
No 73
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.39 E-value=1.1e-12 Score=95.62 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=62.2
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++++||+||++||++|+.+.|.|.++.+++++. +.++-|++| .. .+.+ ++++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD--------~~---~~la-~~~~-------------- 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID--------EV---PDFN-KMYE-------------- 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC--------CC---HHHH-HHcC--------------
Confidence 4679999999999999999999999999999765 788999887 22 2333 4433
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhh
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ 234 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~ 234 (244)
|...|+++++ ++|+++.+..|..+...
T Consensus 66 --------------------V~~iPTf~~f-k~G~~v~~~~G~~~~~~ 92 (114)
T cd02954 66 --------------------LYDPPTVMFF-FRNKHMKIDLGTGNNNK 92 (114)
T ss_pred --------------------CCCCCEEEEE-ECCEEEEEEcCCCCCce
Confidence 2334987777 89999999888765554
No 74
>PRK09381 trxA thioredoxin; Provisional
Probab=99.39 E-value=2.9e-12 Score=93.30 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+++++|+||++||++|+...|.++++.+++.+. +.++.|++|. .. ... ++++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~--------~~---~~~-~~~~-------------- 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ--------NP---GTA-PKYG-------------- 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC--------Ch---hHH-HhCC--------------
Confidence 3679999999999999999999999999999864 8899998762 11 122 2322
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
+...|+++++ ++|+++.++.|..+.++++ .|++.|+
T Consensus 73 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 73 --------------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred --------------------CCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 2233988888 7999999999998888888 8877653
No 75
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.35 E-value=2.5e-12 Score=92.38 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=68.1
Q ss_pred CCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026028 96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 96 ~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
++++.++..-.++++++|.||++||++|+.+.|.+.++.+++++. +.+..|++| .. .+.+ ++++
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~--------~~---~~~~-~~~~--- 69 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCG--------DD---RMLC-RSQG--- 69 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCC--------cc---HHHH-HHcC---
Confidence 334433322235689999999999999999999999999999865 889999887 21 2233 3433
Q ss_pred ceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 176 PIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 176 p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|..+|+++++ ++|+.+.+|.|..+.+.+.
T Consensus 70 -------------------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~ 98 (101)
T cd03003 70 -------------------------------VNSYPSLYVF-PSGMNPEKYYGDRSKESLV 98 (101)
T ss_pred -------------------------------CCccCEEEEE-cCCCCcccCCCCCCHHHHH
Confidence 2333988888 7899889999987776554
No 76
>PRK10996 thioredoxin 2; Provisional
Probab=99.35 E-value=3e-12 Score=97.46 Aligned_cols=88 Identities=13% Similarity=0.199 Sum_probs=69.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
++|+++|+||++||++|+...+.|.++++++.+. +.++.|..| ... +++ ++++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~--------~~~---~l~-~~~~-------------- 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTE--------AER---ELS-ARFR-------------- 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCC--------CCH---HHH-HhcC--------------
Confidence 4789999999999999999999999999998764 888888765 222 233 3333
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
|..+|+++++ ++|+++.++.|..+.++++ .|++++
T Consensus 104 --------------------V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 104 --------------------IRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred --------------------CCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 2334987776 5999999999999888888 887764
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.34 E-value=5e-13 Score=97.69 Aligned_cols=103 Identities=20% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHH---HHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLY---EKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~---~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
+||++||+||.+|||+|+...+++.+.. ..+++ ++.++.+.++ ++.+....+. +..+...+....
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~--- 71 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNID-------DSRDESEAVL-DFDGQKNVRLSN--- 71 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESH-------SHHHHHHHHH-SHTCHSSCHHHH---
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecC-------Cccccccccc-ccccchhhhHHH---
Confidence 5799999999999999998888887543 34433 4889999886 1233333444 322221111100
Q ss_pred CCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
....+.| +|.++|+++++|++|++++++.|..+++++.
T Consensus 72 --~~l~~~~-------------~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~ 109 (112)
T PF13098_consen 72 --KELAQRY-------------GVNGTPTIVFLDKDGKIVYRIPGYLSPEELL 109 (112)
T ss_dssp --HHHHHHT-------------T--SSSEEEECTTTSCEEEEEESS--HHHHH
T ss_pred --HHHHHHc-------------CCCccCEEEEEcCCCCEEEEecCCCCHHHHH
Confidence 0111111 2777899999999999999999999988876
No 78
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.3e-12 Score=104.80 Aligned_cols=89 Identities=20% Similarity=0.356 Sum_probs=73.5
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+-+||||+||++||++|+..+|.|.++..+|+++ +.+..|++| ... ..+ .+++
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D--------~~p---~vA-aqfg-------------- 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCD--------AEP---MVA-AQFG-------------- 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCC--------cch---hHH-HHhC--------------
Confidence 4469999999999999999999999999999987 999999988 222 222 2322
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
|+.+|++|++ ++|+-+.-|.|..+.++++ .|++++.
T Consensus 95 --------------------iqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 95 --------------------VQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred --------------------cCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 4556999999 9999999999999888998 8888763
No 79
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.32 E-value=9e-12 Score=89.35 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=62.0
Q ss_pred cCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCC
Q 026028 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 106 ~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
.+|+ +||.||++||++|+...|.+.++++++++.++.+..|.+| ... ..+ ++++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--------~~~---~~~-~~~~------------- 68 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--------QEP---GLS-GRFF------------- 68 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--------CCH---hHH-HHcC-------------
Confidence 3566 5799999999999999999999999887667888888776 211 122 3332
Q ss_pred CCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HH
Q 026028 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DI 238 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i 238 (244)
|...|+++++ ++|++ .++.|..+.+++. .|
T Consensus 69 ---------------------i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i 99 (101)
T cd02994 69 ---------------------VTALPTIYHA-KDGVF-RRYQGPRDKEDLISFI 99 (101)
T ss_pred ---------------------CcccCEEEEe-CCCCE-EEecCCCCHHHHHHHH
Confidence 3334998876 88986 7888877776665 44
No 80
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-11 Score=88.62 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=65.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+|.+||+|+++||++|+...|.+.+|..+|.+ +.++.|++| . +.+.+ ++++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~~~-------------- 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KEFN-------------- 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-HhcC--------------
Confidence 368999999999999999999999999999987 899999887 2 45555 3433
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
|...|++.++ ++|+.+.++.|.... +++ .|.+
T Consensus 72 --------------------V~~~PTf~f~-k~g~~~~~~vGa~~~-~l~~~i~~ 104 (106)
T KOG0907|consen 72 --------------------VKAMPTFVFY-KGGEEVDEVVGANKA-ELEKKIAK 104 (106)
T ss_pred --------------------ceEeeEEEEE-ECCEEEEEEecCCHH-HHHHHHHh
Confidence 3334888877 999999999887644 555 5543
No 81
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.29 E-value=2.2e-11 Score=92.16 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=66.4
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+++|||+||++||++|+...|.|.++.+++++. +.|+-|.+| .. .+++ ++|++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVD--------e~---~dla-~~y~I------------- 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDIT--------EV---PDFN-TMYEL------------- 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC--------CC---HHHH-HHcCc-------------
Confidence 4689999999999999999999999999999776 788999887 22 3444 44443
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCc-EEEEcCC--------CCChhhHH-HHHHHHh
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPP--------TTSPFQIE-DIQKLVV 243 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~-I~~~~~g--------~~~~~~l~-~i~~lL~ 243 (244)
...|+++++-++|+ .+.+..| ..+.+++. .++.+++
T Consensus 76 ---------------------~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 76 ---------------------YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred ---------------------cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 11166665558888 8888888 45556666 6665553
No 82
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.29 E-value=1.3e-11 Score=89.90 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=63.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+||++||.||++||++|+...+.+.++.+++++.++.++.|.+|. +. ..++.+.++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~---~~~~~~~~~-------------- 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQ---REFAKEELQ-------------- 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cc---hhhHHhhcC--------------
Confidence 578999999999999999999999999999997779999998761 11 122211222
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC-CChhhH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPFQI 235 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~-~~~~~l 235 (244)
+..+|++++++++|+....|.|. .+.+.+
T Consensus 76 --------------------v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l 105 (109)
T cd02993 76 --------------------LKSFPTILFFPKNSRQPIKYPSEQRDVDSL 105 (109)
T ss_pred --------------------CCcCCEEEEEcCCCCCceeccCCCCCHHHH
Confidence 23349999999988888888884 454444
No 83
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.28 E-value=2.7e-11 Score=87.36 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++++||.||++||++|+...|.++++.+++++. +.+..|++| .. .+.+ ++++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~--------~~---~~~~-~~~~-------------- 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQ--------KY---ESLC-QQAN-------------- 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECC--------ch---HHHH-HHcC--------------
Confidence 4679999999999999999999999999998654 888889876 22 2333 3433
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCC-hhhHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS-PFQIE 236 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~-~~~l~ 236 (244)
|...|++++++++|+.+.+|.|..+ .+++.
T Consensus 71 --------------------i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~ 101 (104)
T cd03004 71 --------------------IRAYPTIRLYPGNASKYHSYNGWHRDADSIL 101 (104)
T ss_pred --------------------CCcccEEEEEcCCCCCceEccCCCCCHHHHH
Confidence 2334999999777688999999775 65554
No 84
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.26 E-value=3.5e-11 Score=88.09 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++++||.||++||++|+...|.+.++.+++++. +.++.|++| .... .+.++|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d--------~~~~---l~~~~~~-------------- 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW--------WPQG---KCRKQKH-------------- 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC--------CChH---HHHHhcC--------------
Confidence 4679999999999999999999999999999765 888999876 2222 2212333
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|.+.|++.++ ++|+...+|.|..+.+++.
T Consensus 82 --------------------I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~ 110 (113)
T cd03006 82 --------------------FFYFPVIHLY-YRSRGPIEYKGPMRAPYME 110 (113)
T ss_pred --------------------CcccCEEEEE-ECCccceEEeCCCCHHHHH
Confidence 2233888777 7898888898988776654
No 85
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.26 E-value=2.4e-11 Score=86.85 Aligned_cols=88 Identities=19% Similarity=0.138 Sum_probs=67.7
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC-eEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
++++++|.||++||+.|+...+.++++.+.+++.+ +.++.+.+| . ..+.. ++++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--------~---~~~~~-~~~~------------- 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--------A---EKDLA-SRFG------------- 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--------c---hHHHH-HhCC-------------
Confidence 68899999999999999999999999999998753 777777655 1 12222 3333
Q ss_pred CCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHH
Q 026028 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
|...|+++++++++. +..|.|..+.++++ .|++.
T Consensus 67 ---------------------i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 67 ---------------------VSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ---------------------CCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 233399999998887 67888988888887 77664
No 86
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.25 E-value=1e-10 Score=87.00 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=67.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.|+.++|+|+++|||+|+...|.|.++.++ .++.++.|++|.....+..+.+++.++. ++++....
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~~---------- 87 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPTS---------- 87 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHH-HHcCCccc----------
Confidence 467899999999999999999999999887 2367889988742222222334666666 55543221
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCC-ChhhHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT-SPFQIE 236 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~-~~~~l~ 236 (244)
+.++|+++++ ++|+++.++.|.. +.++++
T Consensus 88 --------------------i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~ 117 (122)
T TIGR01295 88 --------------------FMGTPTFVHI-TDGKQVSVRCGSSTTAQELQ 117 (122)
T ss_pred --------------------CCCCCEEEEE-eCCeEEEEEeCCCCCHHHHH
Confidence 3344988877 8999999998843 455554
No 87
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.24 E-value=2e-11 Score=87.47 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=60.8
Q ss_pred EEEEEEecCCCCCCHHhHHHHHHHHHHhhc--CCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCC
Q 026028 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 110 ~vll~F~~~~C~~C~~~~~~l~~l~~~~~~--~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
++||.||++||++|+...|.++++++++++ .++.++.|.+| ... ..+ ++++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--------~~~---~~~-~~~~--------------- 70 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--------QHR---ELC-SEFQ--------------- 70 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--------CCh---hhH-hhcC---------------
Confidence 599999999999999999999999999986 35888888765 111 222 2322
Q ss_pred chhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|...|+++++ ++|+.+.++.|..+.+++.
T Consensus 71 -------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~ 99 (102)
T cd03005 71 -------------------VRGYPTLLLF-KDGEKVDKYKGTRDLDSLK 99 (102)
T ss_pred -------------------CCcCCEEEEE-eCCCeeeEeeCCCCHHHHH
Confidence 2334998888 7899889999988766554
No 88
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.23 E-value=7.7e-11 Score=84.00 Aligned_cols=82 Identities=9% Similarity=0.201 Sum_probs=63.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+|+++++||++||+.|+...+.+.++.+++.+ ++.++.|+.| ... +.. ++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d--------~~~---~l~-~~~~-------------- 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID--------EDQ---EIA-EAAG-------------- 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC--------CCH---HHH-HHCC--------------
Confidence 568999999999999999999999999999875 4888888776 222 222 3322
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|...|+.+++ ++|+++.++.|..+.+++.
T Consensus 65 --------------------v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~ 93 (97)
T cd02949 65 --------------------IMGTPTVQFF-KDKELVKEISGVKMKSEYR 93 (97)
T ss_pred --------------------CeeccEEEEE-ECCeEEEEEeCCccHHHHH
Confidence 2333999999 5899999999988777665
No 89
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.22 E-value=6.5e-11 Score=85.44 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC--eEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
++++++|.||++||++|+.+.|.++++++++++.+ +.+..+.++ .. ...+ ++++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--------~~---~~~~-~~~~------------ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--------AY---SSIA-SEFG------------ 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--------cC---HhHH-hhcC------------
Confidence 45799999999999999999999999999997644 666667654 11 1222 2322
Q ss_pred CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
|...|++++++ +| +..++.|..+.+++. .+++
T Consensus 70 ----------------------I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 70 ----------------------VRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred ----------------------CccccEEEEEc-CC-CceeecCCCCHHHHHHHHHh
Confidence 33449999994 45 456788887777776 6554
No 90
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.21 E-value=6.2e-11 Score=86.06 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=63.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.|+++||.||++||++|+...+.+.++.+++.+. +.++.|++|. +...+.+ ++++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~---------~~~~~~~-~~~~-------------- 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE---------DKNKPLC-GKYG-------------- 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc---------cccHHHH-HHcC--------------
Confidence 4789999999999999999999999999998754 8889998761 1122333 3332
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCC----cEEEEcCCCCChhhHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG----KVIERYPPTTSPFQIE 236 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G----~I~~~~~g~~~~~~l~ 236 (244)
|...|++++++++| .+...|.|..+.+++.
T Consensus 72 --------------------i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~ 105 (109)
T cd03002 72 --------------------VQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIV 105 (109)
T ss_pred --------------------CCcCCEEEEEeCCCcccccccccccCccCHHHHH
Confidence 33349999998886 3567788877666554
No 91
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.18 E-value=1.8e-10 Score=82.02 Aligned_cols=86 Identities=22% Similarity=0.314 Sum_probs=66.8
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++++|+||++||++|+...+.++++.+++.+. +.++.|..| ... ++. ++++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~--------~~~---~~~-~~~~--------------- 65 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVD--------ENP---DIA-AKYG--------------- 65 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECC--------CCH---HHH-HHcC---------------
Confidence 569999999999999999999999999888654 899999876 221 222 3333
Q ss_pred chhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHH
Q 026028 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
+...|+++++ ++|+++..+.|..+.+++. .|++.
T Consensus 66 -------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 66 -------------------IRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -------------------CCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhh
Confidence 2233999999 7899999998988878877 77664
No 92
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.17 E-value=1e-10 Score=90.03 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+++++||+||++||++|+.+.|.++++.+++++.+++++.|++|. .. +.+ +++++.-.+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--------~~---~la-~~~~V~~~~--------- 104 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--------FP---NVA-EKFRVSTSP--------- 104 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--------CH---HHH-HHcCceecC---------
Confidence 467999999999999999999999999999987679999999872 22 233 444431100
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCC
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g 228 (244)
.++..|+++++ ++|+.+.++.|
T Consensus 105 -------------------~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 105 -------------------LSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred -------------------CcCCCCEEEEE-ECCEEEEEEec
Confidence 13334987777 69999998876
No 93
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.17 E-value=5.6e-11 Score=87.73 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=36.0
Q ss_pred CCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 104 ~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
...+||+|||+||++||++|+.+.+.+.+..+.... +..++.|.+|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 344789999999999999999999999997665543 3456666665
No 94
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.15 E-value=2e-10 Score=82.14 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=69.0
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++++||.||+.||++|+...|.+.++.+++++ ++.++.|..+ .. ...+ +++++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~--------~~---~~l~-~~~~v------------- 69 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD--------EN---KELC-KKYGV------------- 69 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT--------TS---HHHH-HHTTC-------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhh--------cc---chhh-hccCC-------------
Confidence 368999999999999999999999999999987 6999999875 12 3344 44432
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
...|+++++ ++|+...++.|..+.+++. .|++
T Consensus 70 ---------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 70 ---------------------KSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp ---------------------SSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ---------------------CCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 333988877 7888888999998888888 7765
No 95
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.14 E-value=2.5e-10 Score=93.30 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=66.4
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++++|+||++||++|+...|.++++.+++++. +.+..|.+| .. .+.+ ++++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~--------~~---~~l~-~~~~--------------- 103 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT--------RA---LNLA-KRFA--------------- 103 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc--------cc---HHHH-HHcC---------------
Confidence 579999999999999999999999999999864 777777654 11 2233 3433
Q ss_pred chhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
|..+|++++++ +|+++..+.|..+.+++. .+++.+
T Consensus 104 -------------------I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 104 -------------------IKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred -------------------CCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 33449999997 799988888888888887 666554
No 96
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.14 E-value=1.9e-10 Score=106.56 Aligned_cols=95 Identities=16% Similarity=0.129 Sum_probs=70.3
Q ss_pred CCcCCCEEEEEEecCCCCCCHHhHHHH---HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeee
Q 026028 104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (244)
Q Consensus 104 ~~~~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d 180 (244)
.+.+||+|+|+||++||++|+.+.+.. .+++++++ ++.++.|++|+ +.++..++. ++++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~~~-------- 531 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KHYN-------- 531 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HHcC--------
Confidence 334689999999999999999877764 56777774 47888888762 233445555 4433
Q ss_pred cCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEE--EEcCCCCChhhHH-HHHHHH
Q 026028 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI--ERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~--~~~~g~~~~~~l~-~i~~lL 242 (244)
+.+.|+++++|++|+++ .++.|..+++++. .|+++.
T Consensus 532 --------------------------v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 532 --------------------------VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred --------------------------CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 23339999999999984 6888988888888 877653
No 97
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.12 E-value=2.9e-10 Score=81.63 Aligned_cols=85 Identities=24% Similarity=0.297 Sum_probs=60.4
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC-CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
++++++|.||++||++|+...+.++++.+++++. .+.++.|.++ . +....+. ++++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--------~-~~~~~~~-~~~~------------- 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT--------K-PEHDALK-EEYN------------- 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC--------C-CccHHHH-HhCC-------------
Confidence 4679999999999999999999999999999753 3666677665 1 0112222 3322
Q ss_pred CCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|..+|+++++ ++|+++.++.|..+.+++.
T Consensus 73 ---------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~ 101 (104)
T cd02997 73 ---------------------VKGFPTFKYF-ENGKFVEKYEGERTAEDII 101 (104)
T ss_pred ---------------------CccccEEEEE-eCCCeeEEeCCCCCHHHHH
Confidence 2334875555 7899999999988776654
No 98
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.11 E-value=6.1e-10 Score=82.24 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=67.2
Q ss_pred CEEEEEEecCCCCC--CH--HhHHHHHHHHHHh-hcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCC
Q 026028 109 KVLLIVNVASRCGL--TP--SNYSELSHLYEKY-KTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 109 k~vll~F~~~~C~~--C~--~~~~~l~~l~~~~-~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
.++|++||+.||++ |+ ...|.|.++.+++ ++.++.|+.|++|. . .+.+ ++|+
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~---~~La-~~~~----------- 84 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------D---AKVA-KKLG----------- 84 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------C---HHHH-HHcC-----------
Confidence 49999999999988 99 7778899988887 23359999998872 2 3333 4444
Q ss_pred CCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
|.++|+++|+ ++|+++. +.|..+.+.+. .|+++++
T Consensus 85 -----------------------I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 85 -----------------------LDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred -----------------------CccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence 3344988888 7999887 99999999998 8888763
No 99
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.11 E-value=4.2e-10 Score=79.86 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=58.4
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++++|.||++||++|+...+.|.++.+++ ..++.++.|..+ . ..+.. ++++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~--------~---~~~~~-~~~~--------------- 65 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE--------E---LPEIS-EKFE--------------- 65 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc--------c---CHHHH-HhcC---------------
Confidence 689999999999999999999999999997 335788887543 1 12333 3333
Q ss_pred chhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
+...|+++++ ++|+++.++.|.. ++++.
T Consensus 66 -------------------i~~~Pt~~~~-~~g~~~~~~~g~~-~~~l~ 93 (97)
T cd02984 66 -------------------ITAVPTFVFF-RNGTIVDRVSGAD-PKELA 93 (97)
T ss_pred -------------------CccccEEEEE-ECCEEEEEEeCCC-HHHHH
Confidence 2233988888 5899999998864 33443
No 100
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.10 E-value=2.7e-10 Score=82.71 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC-----CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeec
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-----GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-----~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.++++||.||++||++|+...|.+.++.+++++. .+.+..|.+| .. .+.+ ++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--------~~---~~l~-~~~~--------- 75 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--------KE---SDIA-DRYR--------- 75 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--------CC---HHHH-HhCC---------
Confidence 4679999999999999999999999999887532 3777888776 22 2233 4443
Q ss_pred CCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCc-EEEEcCCCCChhhHH
Q 026028 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPPTTSPFQIE 236 (244)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~-I~~~~~g~~~~~~l~ 236 (244)
|...|+++++ ++|+ +...+.|..+.+++.
T Consensus 76 -------------------------v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~ 105 (108)
T cd02996 76 -------------------------INKYPTLKLF-RNGMMMKREYRGQRSVEALA 105 (108)
T ss_pred -------------------------CCcCCEEEEE-eCCcCcceecCCCCCHHHHH
Confidence 2334988888 7888 457788876665543
No 101
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.07 E-value=4.7e-10 Score=80.51 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhc-CCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~-~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
.+++++|.||++||++|+...+.+.++.++++. .++.++.|..+ .. ..+++ ++++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--------~~--~~~~~-~~~~------------- 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD--------EA--NKDLA-KKYG------------- 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC--------Cc--chhhH-HhCC-------------
Confidence 357999999999999999999999999999873 35888888765 10 12233 3322
Q ss_pred CCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|..+|++++++++|+....+.|..+.+++.
T Consensus 73 ---------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~ 102 (105)
T cd02998 73 ---------------------VSGFPTLKFFPKGSTEPVKYEGGRDLEDLV 102 (105)
T ss_pred ---------------------CCCcCEEEEEeCCCCCccccCCccCHHHHH
Confidence 233499999988888888888877666554
No 102
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.07 E-value=9.8e-10 Score=79.65 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=39.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
.+|+|||+|+++||++|+..-|.|.++.++|++. +.++.|.+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5799999999999999999999999999999765 788889776
No 103
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.05 E-value=1.4e-09 Score=78.83 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCC--CCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCC
Q 026028 107 KGKVLLIVNVASR--CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~gk~vll~F~~~~--C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
.|.++||.||++| ||.|....|.|.++.++|+++ +.++-|..| ... +.+ .+|+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid--------~~~---~la-~~f~------------ 80 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRA--------DEQ---ALA-ARFG------------ 80 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECC--------CCH---HHH-HHcC------------
Confidence 5678999999997 999999999999999999876 788889876 222 333 4433
Q ss_pred CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhH
Q 026028 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI 235 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l 235 (244)
|.++|+++++ ++|+++.+..|..+.+++
T Consensus 81 ----------------------V~sIPTli~f-kdGk~v~~~~G~~~~~e~ 108 (111)
T cd02965 81 ----------------------VLRTPALLFF-RDGRYVGVLAGIRDWDEY 108 (111)
T ss_pred ----------------------CCcCCEEEEE-ECCEEEEEEeCccCHHHH
Confidence 3444987777 899999999998877654
No 104
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.04 E-value=1.1e-09 Score=77.45 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=63.8
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhh-cCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~-~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
+++++||.||++||++|+...+.+.++.+.++ +.++.++.|+++ . ..+.. +++++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~---~~~~~-~~~~i------------ 69 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--------A---NNDLC-SEYGV------------ 69 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--------c---hHHHH-HhCCC------------
Confidence 45699999999999999999999999999985 445888888765 2 23333 44332
Q ss_pred CCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
...|++++++++|+.+.++.|..+.+++.
T Consensus 70 ----------------------~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~ 98 (101)
T cd02961 70 ----------------------RGYPTIKLFPNGSKEPVKYEGPRTLESLV 98 (101)
T ss_pred ----------------------CCCCEEEEEcCCCcccccCCCCcCHHHHH
Confidence 23399999998888888888877666554
No 105
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.03 E-value=1.6e-09 Score=80.50 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=32.1
Q ss_pred CcCCCEEEEEEecCCCCCCHHhHHH-H--HHHHHHhhcCCeEEEEEecC
Q 026028 105 KFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 105 ~~~gk~vll~F~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~vi~Vs~D 150 (244)
.-+||+|+|+|+++||+.|+.+-+. + .++.+.+.+ ++.+|-|..|
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~ 59 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE 59 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence 3468999999999999999977653 2 345555433 4777777655
No 106
>PTZ00051 thioredoxin; Provisional
Probab=99.03 E-value=1.6e-09 Score=77.09 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
.+++++|+||++||++|+...+.+.++.+++.+ +.++.|+.|
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc
Confidence 467999999999999999999999999998753 778888654
No 107
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.01 E-value=2.8e-09 Score=76.34 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=60.8
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
++++||.||++||++|+...+.+.++.+++.+. +.++.+.+| .. .+.+ ++++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~--------~~---~~~~-~~~~--------------- 69 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD--------VH---QSLA-QQYG--------------- 69 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc--------ch---HHHH-HHCC---------------
Confidence 567999999999999999999999999998764 888888765 22 2233 3433
Q ss_pred chhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
|...|++++++++.+....|.|..+.+++.
T Consensus 70 -------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~ 99 (103)
T cd03001 70 -------------------VRGFPTIKVFGAGKNSPQDYQGGRTAKAIV 99 (103)
T ss_pred -------------------CCccCEEEEECCCCcceeecCCCCCHHHHH
Confidence 233399999976646667788877766654
No 108
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.99 E-value=2.5e-09 Score=78.41 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=36.4
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
++++||+||++||++|+...|.+.++.++|.+ +.++-|..|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch
Confidence 57999999999999999999999999999864 788888754
No 109
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.97 E-value=1.9e-09 Score=77.27 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhc-CCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~-~~~~vi~Vs~D 150 (244)
.+++++|.||++||++|+.+.+.+.++.+++++ ..+.+..|++|
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 358999999999999999999999999999987 35778888765
No 110
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.97 E-value=4.5e-09 Score=77.09 Aligned_cols=42 Identities=7% Similarity=-0.099 Sum_probs=37.5
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+++++||+||++||++|+...|.|.++.+++.+ +.++-|..|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 457999999999999999999999999998864 789989876
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.96 E-value=5.8e-09 Score=76.48 Aligned_cols=86 Identities=16% Similarity=0.260 Sum_probs=62.4
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
++.++|+||++||++|+...+.++++.+++ + .++++.|..| .. .+.+ ++|+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d--------~~---~~l~-~~~~--------------- 72 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFD--------ED---KEKA-EKYG--------------- 72 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCC--------cC---HHHH-HHcC---------------
Confidence 457888899999999999999999999887 3 3888888876 22 1233 3333
Q ss_pred chhhHHHhhhccCCCcCCccccceeEEEECCC---CcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN---GKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~---G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
|.+.|++++.+.+ |++ ++.|..+..++. .|+.+++
T Consensus 73 -------------------v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 73 -------------------VERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred -------------------CCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHh
Confidence 2334988888653 333 577877778888 8888875
No 112
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.92 E-value=4.9e-09 Score=93.93 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=41.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+++++||+||++||++|+.+.|.+.++.++|++.++.++.|.+|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD 413 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRAD 413 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 67899999999999999999999999999998878899999887
No 113
>PTZ00102 disulphide isomerase; Provisional
Probab=98.92 E-value=2.6e-09 Score=97.10 Aligned_cols=104 Identities=17% Similarity=0.095 Sum_probs=74.1
Q ss_pred EEcCCCCeeecC-CcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC-eEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026028 93 VKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (244)
Q Consensus 93 l~~~~g~~v~L~-~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~ 170 (244)
++.+.|+.+.-. .-.||++||+||++||++|+...|.++++.+++++.+ +.+..|..|. .+. .+ ++
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------~~~---~~-~~ 426 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------NET---PL-EE 426 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC--------Ccc---ch-hc
Confidence 445556554422 1257899999999999999999999999999988643 6666676551 110 01 11
Q ss_pred cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 171 ~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
++ +.+.|++++++++|++..++.|..+.+++. .|++..
T Consensus 427 ~~----------------------------------v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 427 FS----------------------------------WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred CC----------------------------------CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 11 334499999998888877899988888888 777654
No 114
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.92 E-value=1.1e-08 Score=70.10 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 111 vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
.|..||++||++|+...+.|+++.++++.. +.++.|+.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVM 40 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCc
Confidence 467899999999999999999999998654 888888765
No 115
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.91 E-value=5.7e-09 Score=84.70 Aligned_cols=129 Identities=17% Similarity=0.230 Sum_probs=90.6
Q ss_pred ccccccCCcccceEEEcCCCCe-eecCCc-C-CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCC----
Q 026028 79 HATAATEKSLYDFTVKDIDGKD-VPLSKF-K-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ---- 151 (244)
Q Consensus 79 ~~~~~~g~~~pdf~l~~~~g~~-v~L~~~-~-gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~---- 151 (244)
...+..|..+||..+.+.+|+. .++.|+ + ++|+||+|..-.||+=+..+.+++++.++|.+. ++++.|.+.+
T Consensus 70 ~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHps 148 (237)
T PF00837_consen 70 FKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPS 148 (237)
T ss_pred ccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcC
Confidence 4567789999999999999998 999998 4 479999999888999999999999999999985 5555554431
Q ss_pred ---------CCCCCCCChHH---HHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCC
Q 026028 152 ---------FGGQEPGSNPE---IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN 219 (244)
Q Consensus 152 ---------~~~~~~~~~~~---~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~ 219 (244)
..-+.+.+.++ +.+.. .+.....|++ .|.-.......|+..- -.+||| ++
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~--vD~mdN~~~~~YgA~P--------------eRlyIi-~~ 210 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIV--VDTMDNNFNKAYGALP--------------ERLYII-QD 210 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEE--EEccCCHHHHHhCCCc--------------ceEEEE-EC
Confidence 00111222222 22223 2334678888 5544455666776432 246777 69
Q ss_pred CcEEEEc
Q 026028 220 GKVIERY 226 (244)
Q Consensus 220 G~I~~~~ 226 (244)
|+|+|..
T Consensus 211 gkv~Y~G 217 (237)
T PF00837_consen 211 GKVVYKG 217 (237)
T ss_pred CEEEEeC
Confidence 9998774
No 116
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.91 E-value=3.9e-09 Score=77.76 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=39.6
Q ss_pred cCCCEEEEEEec-------CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 106 FKGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 106 ~~gk~vll~F~~-------~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
.+|++++|+||| +||++|+...|.|+++.++++++ +.++.|.+|
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd 69 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVG 69 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcC
Confidence 358899999999 99999999999999999999743 899999887
No 117
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.90 E-value=7.2e-09 Score=81.81 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=36.7
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+++|||+||++||++|+...+.|.++.++|.. +.++-|.+|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 35999999999999999999999999999863 889989765
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.90 E-value=2.9e-08 Score=72.83 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=66.3
Q ss_pred CcCCCEEEEEEecCCCCCCHHhHHHH---HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeec
Q 026028 105 KFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 105 ~~~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.-++|+++|+|++.||+.|....... .++.+.+.+ ++.++.+.++ + .+..+++ +.++
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~~~--------- 73 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QSYK--------- 73 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HHhC---------
Confidence 34689999999999999999876542 344445443 3666666543 2 2234444 3322
Q ss_pred CCCCCCchhhHHHhhhccCCCcCCccccceeEEEECC-CCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~-~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
+...|+.++||+ +|+++.+..|..+++++. .|++.+.
T Consensus 74 -------------------------~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 74 -------------------------VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred -------------------------ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 122399999999 899999999999999988 8887764
No 119
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.84 E-value=2.5e-08 Score=69.08 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=59.0
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCCc
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~ 188 (244)
++++|.||++||+.|....+.++++.++ ..++.++.|+.+ .. .+.. ++++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~--------~~---~~~~-~~~~---------------- 60 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD--------EN---PELA-EEYG---------------- 60 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC--------CC---hhHH-HhcC----------------
Confidence 7999999999999999999999999988 445899999876 21 1222 3322
Q ss_pred hhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
+...|+++++ ++|+++..+.|..+.+++.
T Consensus 61 ------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~ 89 (93)
T cd02947 61 ------------------VRSIPTFLFF-KNGKEVDRVVGADPKEELE 89 (93)
T ss_pred ------------------cccccEEEEE-ECCEEEEEEecCCCHHHHH
Confidence 2233888877 5788889988877766655
No 120
>PLN02309 5'-adenylylsulfate reductase
Probab=98.83 E-value=2e-08 Score=90.05 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=40.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
++|++||+||++||++|+.+.|.+.++.++|++.++.|+.|++|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 57899999999999999999999999999998878999999876
No 121
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.83 E-value=2.3e-08 Score=73.44 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=36.4
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC-C-eEEEEEecC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-G-FEILAFPCN 150 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~-~~vi~Vs~D 150 (244)
++++||.||++||++|+.+.+.++++.+++++. + +.+..|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999998753 2 677777654
No 122
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.82 E-value=2.1e-08 Score=80.32 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=36.6
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+++|||+||++||++|+...+.|.++.++|.+ +.++-|..|
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST 142 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence 46999999999999999999999999999964 788888754
No 123
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.73 E-value=7.9e-08 Score=68.82 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=38.6
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
.|+++++.|++.||++|....+.+.++.++|+++ +.++.|+.|
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~ 53 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD 53 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence 3789999999999999999999999999999876 888888654
No 124
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.8e-08 Score=77.97 Aligned_cols=91 Identities=23% Similarity=0.237 Sum_probs=66.4
Q ss_pred ecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeec
Q 026028 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 102 ~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
+|+.-.||.|+|+|+++||++|+...|.+.++..+|++ ..++-|.+| +.+..+ ..++
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~ta-a~~g--------- 71 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTA-ATNG--------- 71 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchh-hhcC---------
Confidence 34444679999999999999999999999999999965 688889655 344433 2222
Q ss_pred CCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
|...|++++. .+|+-+..+.|. ++.-++ .+.+.+
T Consensus 72 -------------------------V~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 72 -------------------------VNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred -------------------------cccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHHh
Confidence 3333775555 889888888884 355677 776654
No 125
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.71 E-value=3.4e-08 Score=89.19 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC--eEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
++++++|.||++||++|+...|.+.++.+.+.+.+ +.++.|.++ .. .+.+ ++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--------~~---~~l~-~~~~------------ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT--------EE---KDLA-QKYG------------ 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC--------Cc---HHHH-HhCC------------
Confidence 56799999999999999999999999999988765 788888776 11 2333 4433
Q ss_pred CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcE-EEEcCCCCChhhHH-HHHHHH
Q 026028 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I-~~~~~g~~~~~~l~-~i~~lL 242 (244)
|...|+++++ ++|+. +..|.|..+.+.+. .|++.+
T Consensus 73 ----------------------i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 73 ----------------------VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred ----------------------CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence 2333887777 57776 77888888888777 776654
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=98.65 E-value=7e-08 Score=87.81 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=64.4
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC--eEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
+++.+||.||++||++|+...|.+.++.+++++.+ +.+..|.++ .. .+.+ ++++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--------~~---~~l~-~~~~------------ 103 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--------EE---MELA-QEFG------------ 103 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC--------CC---HHHH-HhcC------------
Confidence 57899999999999999999999999998887543 677777654 11 2233 3433
Q ss_pred CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
|.++|++++++.++. + .|.|..+.+++. .+++++
T Consensus 104 ----------------------i~~~Pt~~~~~~g~~-~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 104 ----------------------VRGYPTIKFFNKGNP-V-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred ----------------------CCcccEEEEEECCce-E-EecCCCCHHHHHHHHHHhh
Confidence 233499999965544 4 788888888887 777765
No 127
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.62 E-value=1.7e-07 Score=63.63 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=30.0
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEE
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~V 147 (244)
.|.||++|||+|....+.++++.+++... ++++-|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v 36 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV 36 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe
Confidence 37899999999999999999999998654 677666
No 128
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.59 E-value=3e-07 Score=75.08 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=62.5
Q ss_pred CcCCCEEEEEEec---CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeec
Q 026028 105 KFKGKVLLIVNVA---SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 105 ~~~gk~vll~F~~---~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
..++...|+.|++ +||++|+...|.+.++.+++.+ +++..+.+|. ++..+.+ ++|+
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~---------~~~~~l~-~~~~--------- 74 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT---------PEDKEEA-EKYG--------- 74 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC---------cccHHHH-HHcC---------
Confidence 3455555666877 9999999999999999999853 5555555541 1123333 4433
Q ss_pred CCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEE-EEcCCCCChhhHH-HHHHHH
Q 026028 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~-~~~~g~~~~~~l~-~i~~lL 242 (244)
|.+.|++++++ +|+.+ .++.|..+.+++. .|+.++
T Consensus 75 -------------------------V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 75 -------------------------VERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred -------------------------CCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 33349888874 67776 4888988888887 777775
No 129
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.7e-07 Score=67.93 Aligned_cols=134 Identities=22% Similarity=0.219 Sum_probs=88.7
Q ss_pred cccCCcccceEEEcCCC-------CeeecCC-cCCCEEEE-EEecCCCCCCHH-hHHHHHHHHHHhhcCCe-EEEEEecC
Q 026028 82 AATEKSLYDFTVKDIDG-------KDVPLSK-FKGKVLLI-VNVASRCGLTPS-NYSELSHLYEKYKTQGF-EILAFPCN 150 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g-------~~v~L~~-~~gk~vll-~F~~~~C~~C~~-~~~~l~~l~~~~~~~~~-~vi~Vs~D 150 (244)
..+|+++|..+++...+ ..++-.+ ++||.|+| -..+.+.|.|.. ++|...+++++|+++|+ +|+.|++|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 45899999998887522 2345555 47876555 334889999996 89999999999999997 67778887
Q ss_pred CCCCCCCCChHHHHHHHHHhcCC-CcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC
Q 026028 151 QFGGQEPGSNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~ 229 (244)
+...+.+|.+....- +..++ .|.+++ ..+..+.+-... -.+.++.+-+...|| +||.|.+.+...
T Consensus 83 --------D~FVm~AWak~~g~~~~I~fi--~Dg~ge-FTk~~Gm~~d~~--~~g~G~RS~RYsmvV-~nGvV~~~~iE~ 148 (165)
T COG0678 83 --------DAFVMNAWAKSQGGEGNIKFI--PDGNGE-FTKAMGMLVDKS--DLGFGVRSWRYSMVV-ENGVVEKLFIEP 148 (165)
T ss_pred --------cHHHHHHHHHhcCCCccEEEe--cCCCch-hhhhcCceeecc--cCCcceeeeeEEEEE-eCCeEEEEEecC
Confidence 889999999444333 45556 444443 233333222111 122234444666777 799998876543
No 130
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.52 E-value=5.6e-07 Score=73.37 Aligned_cols=97 Identities=25% Similarity=0.245 Sum_probs=67.6
Q ss_pred ecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeec
Q 026028 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 102 ~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.+.++.+++-|++|+.+.|++|..+.|.|+.+.++| |+.|+.||+|.-+.+ .||... .
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~------------------~fp~~~-~ 171 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP------------------SFPNPR-P 171 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc------------------CCCCCC-C
Confidence 345567789999999999999999999999999988 599999999831110 111110 0
Q ss_pred CCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCC-cEEEEcCCCCChhhHH
Q 026028 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIE 236 (244)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G-~I~~~~~g~~~~~~l~ 236 (244)
| ....+.++ |..+|++||+++++ ++.-...|.++.++|.
T Consensus 172 ~---~g~~~~l~-------------v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~ 211 (215)
T PF13728_consen 172 D---PGQAKRLG-------------VKVTPALFLVNPNTKKWYPVSQGFMSLDELE 211 (215)
T ss_pred C---HHHHHHcC-------------CCcCCEEEEEECCCCeEEEEeeecCCHHHHH
Confidence 0 00111111 44559999999988 6666678888887776
No 131
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.52 E-value=3.4e-07 Score=68.31 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.7
Q ss_pred cCCCEEEEEEecCCCCCCHHhHHHH
Q 026028 106 FKGKVLLIVNVASRCGLTPSNYSEL 130 (244)
Q Consensus 106 ~~gk~vll~F~~~~C~~C~~~~~~l 130 (244)
-+||+|+|+|++.||++|+.+-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 3689999999999999999877654
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=98.52 E-value=6.3e-07 Score=72.21 Aligned_cols=75 Identities=11% Similarity=-0.031 Sum_probs=57.2
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCCc
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~ 188 (244)
..+|++||++||++|+.+.+.|.++.++|.+ +.++.|.. + ++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~-----------d---------~~---------------- 59 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNL-----------A---------DA---------------- 59 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEcc-----------c---------cC----------------
Confidence 4678999999999999999999999999965 77877742 1 11
Q ss_pred hhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHH
Q 026028 189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
|...|+++++ ++|+++.++.|.. +.++. .|+++
T Consensus 60 ------------------V~~vPtfv~~-~~g~~i~r~~G~~-~~~~~~~~~~~ 93 (204)
T PTZ00062 60 ------------------NNEYGVFEFY-QNSQLINSLEGCN-TSTLVSFIRGW 93 (204)
T ss_pred ------------------cccceEEEEE-ECCEEEeeeeCCC-HHHHHHHHHHH
Confidence 3334988777 7999999998865 55555 55543
No 133
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.48 E-value=1.1e-06 Score=73.05 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=71.3
Q ss_pred cCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecC
Q 026028 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 103 L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
+.++.+++-|++||...|++|..+.|.|+.+.++| |+.|+.||+|.-+.+ .||... .|
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p------------------~fp~~~-~d 202 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIP------------------GLPNSR-SD 202 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCC------------------CCCCcc-CC
Confidence 44556789999999999999999999999999987 589999999832111 122110 01
Q ss_pred CCCCCchhhHHHhhhccCCCcCCccccceeEEEECCC-CcEEEEcCCCCChhhHH-HHHHHH
Q 026028 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~-G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
.| ....+ +|..+|++||++++ +++.-...|.++.+++. .|..++
T Consensus 203 -~g--qa~~l-------------~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 203 -SG--QAQHL-------------GVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred -hH--HHHhc-------------CCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 00 00111 14455999999999 66666778999999988 666554
No 134
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.43 E-value=6e-07 Score=81.10 Aligned_cols=87 Identities=21% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC--CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
.++.+||.||++||++|+...|.+.++.+++++. ++.++.|.++. .+ . ..
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~--------n~-----~-~~-------------- 414 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA--------ND-----V-PP-------------- 414 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC--------Cc-----c-CC--------------
Confidence 4789999999999999999999999999999872 58888887651 10 0 00
Q ss_pred CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcE-EEEcCCCCChhhHH-HHHHH
Q 026028 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I-~~~~~g~~~~~~l~-~i~~l 241 (244)
+ .+..+|+++++++++++ ...+.|..+.+.+. .|++.
T Consensus 415 -------~-------------~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 415 -------F-------------EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred -------C-------------CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 0 03334999999776662 45677877777776 66554
No 135
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.39 E-value=1.6e-06 Score=71.79 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=71.6
Q ss_pred cCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecC
Q 026028 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 103 L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
+.++.+++-|++||.+.||+|..+.|.|+.+.++| |+.|+.||+|.-+.+ .||... .|
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~p------------------~fp~~~-~d 195 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVINP------------------LLPDSR-TD 195 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCC------------------CCCCCc-cC
Confidence 45566779999999999999999999999999987 589999999831111 122110 11
Q ss_pred CCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCC-cEEEEcCCCCChhhHH-HHHHHH
Q 026028 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G-~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
.|. ...+ +|...|++||++++. ++.-...|.++.+++. .|..+.
T Consensus 196 -~gq--a~~l-------------~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 196 -QGQ--AQRL-------------GVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred -hhH--HHhc-------------CCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 010 0011 145569999999985 7777778999999988 666554
No 136
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.37 E-value=3.7e-06 Score=58.80 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=37.7
Q ss_pred cCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 103 L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+.++++.+-+..|++.||++|+...+.++++.+++.+ +.+..+..|
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 3467778888899999999999999999999987753 777777654
No 137
>smart00594 UAS UAS domain.
Probab=98.32 E-value=5.2e-06 Score=61.60 Aligned_cols=86 Identities=8% Similarity=0.017 Sum_probs=58.7
Q ss_pred cCCCEEEEEEecCCCCCCHHhHHHH---HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecC
Q 026028 106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 106 ~~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
-++|+++|+|++.||+.|......+ .++.+.+.+ ++.++.+.++ +.+ ..+++ +.++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~e-g~~l~-~~~~~--------- 84 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSE-GQRVS-QFYKL--------- 84 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------Chh-HHHHH-HhcCc---------
Confidence 3689999999999999999877653 234444433 4666666654 222 23444 34322
Q ss_pred CCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCC-----cEEEEcCCCCChhhHH
Q 026028 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-----KVIERYPPTTSPFQIE 236 (244)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G-----~I~~~~~g~~~~~~l~ 236 (244)
...|++.++|++| .++.+..|..+++++.
T Consensus 85 -------------------------~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~ 118 (122)
T smart00594 85 -------------------------DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELM 118 (122)
T ss_pred -------------------------CCCCEEEEEecCCCceeEEEeccccCCCCHHHHH
Confidence 2239999999998 5778889999888775
No 138
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.9e-06 Score=77.30 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=61.9
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC--CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
..+||.|||.||++|+...|++.+...++++. .+.+.-|... . + ...+ .+|++
T Consensus 43 ~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---------~-~-~~~~-~~y~v------------- 97 (493)
T KOG0190|consen 43 EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---------E-E-SDLA-SKYEV------------- 97 (493)
T ss_pred ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---------h-h-hhhH-hhhcC-------------
Confidence 58899999999999999999999999999987 4677777432 2 2 4444 55443
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
.++|++-+. ++|+....|.|....+.+- ++++
T Consensus 98 ---------------------~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 98 ---------------------RGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred ---------------------CCCCeEEEE-ecCCcceeccCcccHHHHHHHHHh
Confidence 333765555 8888877888876666665 5544
No 139
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.25 E-value=3.4e-06 Score=57.95 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHH---HHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vi~Vs~D 150 (244)
+||+++|+|++.||+.|+.+-..+ .++.+.+. +++..+.|..|
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC
Confidence 689999999999999999887766 34444344 44888888765
No 140
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.24 E-value=2.5e-06 Score=77.47 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=70.4
Q ss_pred CcCCCEEEEEEecCCCCCCHHhHHHH-HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCC
Q 026028 105 KFKGKVLLIVNVASRCGLTPSNYSEL-SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 105 ~~~gk~vll~F~~~~C~~C~~~~~~l-~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
+-++|||+|+|+|+||-.|+..-+.. .+.+...+-.|++.+-+.+. .+..++.+.. ++++.
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lL-k~~~~---------- 532 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALL-KRLGV---------- 532 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHH-HHcCC----------
Confidence 34567999999999999999776554 46666666677888888775 2456677777 56543
Q ss_pred CCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHH
Q 026028 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
.+.|++++++++|+-...-.|.++.+.++ .|++.
T Consensus 533 ------------------------~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 533 ------------------------FGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred ------------------------CCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 12299999999998877788888887777 77654
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.22 E-value=8.6e-06 Score=66.48 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=31.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
++.++|+.||++||++|+...+.++++..++. .+.+..|..|
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 44456666999999999988888888877643 3677666654
No 142
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.20 E-value=8e-05 Score=56.85 Aligned_cols=144 Identities=20% Similarity=0.271 Sum_probs=84.6
Q ss_pred ccCCcccceEEEcC-----CC-----CeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHH-hhcCCeEEEEE-ecC
Q 026028 83 ATEKSLYDFTVKDI-----DG-----KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK-YKTQGFEILAF-PCN 150 (244)
Q Consensus 83 ~~g~~~pdf~l~~~-----~g-----~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~-~~~~~~~vi~V-s~D 150 (244)
..|+++|...+.|. +| +.++..++.||+-||...|-.-..-...-|-+..+.+. |....++..+| +.|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 36778888877653 33 45566677899888877765544444444555555554 55555666553 444
Q ss_pred CCCCCCCCChHHHHHHHHHhcCCCcceee-ecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC
Q 026028 151 QFGGQEPGSNPEIKEFACTRFKAEFPIFD-KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~ 229 (244)
+ -...+.--++..+ ++-...||+-. -.|.+|. ....|+.-.. .-..+|+|++|+|++...|.
T Consensus 82 D---Ai~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~-~~~aW~L~~~------------~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 D---AIWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGV-VRKAWQLQEE------------SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred c---ccccchHHHHHHH-HHhhhhCCCcEEEEcCCCc-eeccccCCCC------------CceEEEEcCCccEEEEECCC
Confidence 1 1112333444444 33333444321 1455543 4444542111 14578999999999999999
Q ss_pred CChhhHHHHHHHHh
Q 026028 230 TSPFQIEDIQKLVV 243 (244)
Q Consensus 230 ~~~~~l~~i~~lL~ 243 (244)
+++++++.+-.+++
T Consensus 145 Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 145 LSPAEVQQVIALLK 158 (160)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999994445554
No 143
>PHA02125 thioredoxin-like protein
Probab=98.18 E-value=6.8e-06 Score=55.49 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=24.2
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.||++||++|+...+.|.++. ++++-|+.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~ 33 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTD 33 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCC
Confidence 68899999999999989886541 345556543
No 144
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.17 E-value=3.1e-05 Score=62.69 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=77.7
Q ss_pred cCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC---eEEEEEecCCCCCCCCCCh
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~---~~vi~Vs~D~~~~~~~~~~ 160 (244)
.-+..|.+++-+.+ -+.+.+|+++||.+...+|..|..++..|..|..++.+.| +.++.|+-- +..+.
T Consensus 6 ~C~~~p~W~i~~~~----pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-----~~~s~ 76 (238)
T PF04592_consen 6 ICKPPPPWKIGGQD----PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-----GEHSR 76 (238)
T ss_pred cCCCCCCceECCch----HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-----Ccchh
Confidence 45677888875543 5677899999999999999999999999999999999886 455666521 11222
Q ss_pred HHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEc
Q 026028 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~ 226 (244)
.... .++.+....+|++.. |.. ...+|..+.... --+||+|+-|++.+..
T Consensus 77 ~~~~-~l~~r~~~~ipVyqq-~~~---q~dvW~~L~G~k-----------dD~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 77 LKYW-ELKRRVSEHIPVYQQ-DEN---QPDVWELLNGSK-----------DDFLIYDRCGRLTYHI 126 (238)
T ss_pred HHHH-HHHHhCCCCCceecC-Ccc---ccCHHHHhCCCc-----------CcEEEEeccCcEEEEe
Confidence 2112 222444445888842 112 233444443221 1279999999998874
No 145
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.14 E-value=4e-06 Score=62.82 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=47.2
Q ss_pred CCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCC
Q 026028 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 104 ~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
..+..+..++.|..+|||-|...+|.|.++.+..++ +++=-|..| +..+.. ++|-.
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-----------~~~el~-~~~lt---------- 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-----------ENKELM-DQYLT---------- 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-----------HHHHHT-TTTTT----------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-----------CChhHH-HHHHh----------
Confidence 344566888999999999999999999999998653 555555433 333333 22110
Q ss_pred CCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCC
Q 026028 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~ 229 (244)
+ +...+|+++++|++|+.+.+|.+.
T Consensus 93 ~---------------------g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 93 N---------------------GGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp ----------------------SS--SSEEEEE-TT--EEEEEESS
T ss_pred C---------------------CCeecCEEEEEcCCCCEeEEEcCC
Confidence 0 123349999999999999998665
No 146
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.13 E-value=4.4e-06 Score=59.76 Aligned_cols=48 Identities=29% Similarity=0.386 Sum_probs=40.7
Q ss_pred ecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 102 ~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
.+...+++++++.||+.||++|+...+.+.++.+++.. .+.++.+...
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 44444588999999999999999999999999999986 4788888763
No 147
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.07 E-value=3e-05 Score=50.84 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=30.9
Q ss_pred EEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 111 vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
-|..|+++|||+|....+.|+++.+++. ++++..|.+|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 3678999999999999999999976543 4788888765
No 148
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.06 E-value=2.5e-05 Score=49.34 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=32.4
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.||..||+.|....+.+.++ ++.+.++.++.++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~ 37 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVD 37 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcC
Confidence 5789999999999999999998 555667999999987
No 149
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.1e-05 Score=57.43 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=85.9
Q ss_pred ccccccCCcccc--eE-EEcCC----CCeeecCCc-CCCEEEE-EEecCCCCC-CHHhHHHHHHHHHHhhcCCe-EEEEE
Q 026028 79 HATAATEKSLYD--FT-VKDID----GKDVPLSKF-KGKVLLI-VNVASRCGL-TPSNYSELSHLYEKYKTQGF-EILAF 147 (244)
Q Consensus 79 ~~~~~~g~~~pd--f~-l~~~~----g~~v~L~~~-~gk~vll-~F~~~~C~~-C~~~~~~l~~l~~~~~~~~~-~vi~V 147 (244)
.+..++|+.+|+ .+ +.+.. +.+++++++ +||.+|| -..+.+.|. |+.++|-+.+-.++++.+|+ +|+.|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 466789999999 33 22221 227888885 8876555 333788998 56889999999999999997 67788
Q ss_pred ecCCCCCCCCCChHHHHHHHHHhcCCC--cceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEE
Q 026028 148 PCNQFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 148 s~D~~~~~~~~~~~~~~~~~~~~~~~~--~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
++| ++..+..|. +.++.+ ..++ .|..+. ..+..+.......... .+..-+...++ .||+|.+.
T Consensus 86 SVn--------DpFv~~aW~-k~~g~~~~V~f~--aD~~g~-ftk~lgleld~~d~~~--g~RS~R~a~vv-engkV~~~ 150 (171)
T KOG0541|consen 86 SVN--------DPFVMKAWA-KSLGANDHVKFV--ADPAGE-FTKSLGLELDLSDKLL--GVRSRRYALVV-ENGKVTVV 150 (171)
T ss_pred ecC--------cHHHHHHHH-hhcCccceEEEE--ecCCCc-eeeeccceeeeccccC--ccccccEEEEE-eCCeEEEE
Confidence 988 899999998 676664 3445 344443 2333332211111111 23332444555 78999877
Q ss_pred cCC
Q 026028 226 YPP 228 (244)
Q Consensus 226 ~~g 228 (244)
...
T Consensus 151 nvE 153 (171)
T KOG0541|consen 151 NVE 153 (171)
T ss_pred Eec
Confidence 543
No 150
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.3e-05 Score=70.56 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=36.6
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC-CeEEEEEe
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFP 148 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vi~Vs 148 (244)
.+|=|||.||++||++|+...|.+++|.++|++. ++.|.-+.
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmD 425 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMD 425 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEec
Confidence 5789999999999999999999999999999986 45555554
No 151
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.84 E-value=0.00059 Score=54.70 Aligned_cols=124 Identities=16% Similarity=0.274 Sum_probs=83.4
Q ss_pred CCcccceEEEcCCCCeeecCCc-CCC--EEEEEEe-----cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCC
Q 026028 85 EKSLYDFTVKDIDGKDVPLSKF-KGK--VLLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (244)
Q Consensus 85 g~~~pdf~l~~~~g~~v~L~~~-~gk--~vll~F~-----~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~ 156 (244)
+..-.+..+...+|+ ++|.|+ .|| .+|..|. ...|+.|...+..++....-+..+++.++.||-.
T Consensus 43 v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra------ 115 (211)
T PF05988_consen 43 VEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA------ 115 (211)
T ss_pred ccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC------
Confidence 444456788888887 899885 776 3444444 4579999999999977778888889999999954
Q ss_pred CCChHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCC
Q 026028 157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g 228 (244)
..+++..|. ++-|..+|+++..+ ......|+.-....+...+ =..|+-|. |+|.+.|..
T Consensus 116 --P~~~i~afk-~rmGW~~pw~Ss~g---s~Fn~D~~~~~~~~~~~~g------~svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 116 --PLEKIEAFK-RRMGWTFPWYSSYG---SDFNYDFGVSFDEGGEMPG------LSVFLRDG-GRVFHTYST 174 (211)
T ss_pred --CHHHHHHHH-HhcCCCceEEEcCC---CcccccccceeccCCCcee------EEEEEEcC-CEEEEEeec
Confidence 889999998 78899999996532 3333334321111111111 13455554 888877754
No 152
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00018 Score=63.81 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
.+++.+|.||++||++|....+...++...+++. +.+..|.+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~ 87 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDC 87 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCc
Confidence 3568999999999999999999999999999873 66666644
No 153
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.69 E-value=0.00033 Score=58.38 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=76.0
Q ss_pred ccCCcccceEEEcCCCCeeecCC-cCCCEEEEEEe-cCCCCCCHHhH--HHHHHHHHHhhcCCeEEEEEecCCCCCCCCC
Q 026028 83 ATEKSLYDFTVKDIDGKDVPLSK-FKGKVLLIVNV-ASRCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~g~~v~L~~-~~gk~vll~F~-~~~C~~C~~~~--~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~ 158 (244)
...-.+|+|...+++|+.+++.+ ++||+.||..+ ..|-..|.... |.+.++..+ ....+++|-|++-
T Consensus 96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~-~~~~~q~v~In~~-------- 166 (252)
T PF05176_consen 96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQE-PYGRVQIVEINLI-------- 166 (252)
T ss_pred HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhC-CCCceEEEEEecc--------
Confidence 34567899999999999988876 59997777555 33433333222 223332222 1115899999873
Q ss_pred ChHHHHHHHHHh------------cCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEc
Q 026028 159 SNPEIKEFACTR------------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 159 ~~~~~~~~~~~~------------~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~ 226 (244)
..-++.++..- .+..|-+.. .+..... +++..+ ... ..+..+||||++|+|++.-
T Consensus 167 -e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~----~~~~~~~----iRe~Lg-i~N---~~~GYvyLVD~~grIRWag 233 (252)
T PF05176_consen 167 -ENWLKSWLVKLFMGSLRKSIPEERHDRYFIVY----RGQLSDD----IREALG-INN---SYVGYVYLVDPNGRIRWAG 233 (252)
T ss_pred -hHHHHHHHHHHHhhhhhccCCHHHCceEEEEe----CCcccHH----HHHHhC-CCC---CCcCeEEEECCCCeEEeCc
Confidence 23334444211 111222221 0000111 111111 000 1115689999999999999
Q ss_pred CCCCChhhHHHHHHH
Q 026028 227 PPTTSPFQIEDIQKL 241 (244)
Q Consensus 227 ~g~~~~~~l~~i~~l 241 (244)
.|..++++++.|.+.
T Consensus 234 sG~At~~E~~~L~k~ 248 (252)
T PF05176_consen 234 SGPATPEELESLWKC 248 (252)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999998854443
No 154
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.57 E-value=0.00059 Score=50.10 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=62.0
Q ss_pred CcCCCEEEEEEecC----CCCCCHHhH--HHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 105 KFKGKVLLIVNVAS----RCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 105 ~~~gk~vll~F~~~----~C~~C~~~~--~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.-++|+++|+++.+ ||..|+..+ +++.+..+ .++.+++.+++ +.+ -.+.+ ..++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~--------~~e-g~~la-~~l~------ 73 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVA--------KPE-GYRVS-QALR------ 73 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecC--------ChH-HHHHH-HHhC------
Confidence 34689999999988 778887554 44444443 34767777654 232 23333 2222
Q ss_pred eecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEE---CCCCcEEEEcCCCCChhhHH-HHHHHHhC
Q 026028 179 DKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV---DKNGKVIERYPPTTSPFQIE-DIQKLVVA 244 (244)
Q Consensus 179 ~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lI---D~~G~I~~~~~g~~~~~~l~-~i~~lL~~ 244 (244)
+...|...+| +.+.+++.+..|..+++++. .|+.++++
T Consensus 74 ----------------------------~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 74 ----------------------------ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred ----------------------------CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2223888888 77778899999999999999 88887653
No 155
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.48 E-value=0.001 Score=48.61 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=56.7
Q ss_pred HHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhh-------------
Q 026028 130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK------------- 196 (244)
Q Consensus 130 l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~------------- 196 (244)
|.+.+.++++.|+.+|.|.+. +.+.+++|+ +..+.++|++.|.+ ..+|+.+.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~D~~------~~lY~~lg~~~~~~~~~~~~~ 66 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYVDPE------RKLYKALGLKRGLKWSLLPPA 66 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEEeCc------HHHHHHhCCccccccCCCchH
Confidence 566778888899999999976 776799998 77889999986643 12222211
Q ss_pred -------------hc-cCCCc-CCccccceeEEEECCCCcEEEEcC
Q 026028 197 -------------SS-AGGFL-GDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 197 -------------~~-~~~~~-~~~i~~~P~~~lID~~G~I~~~~~ 227 (244)
.. ..+.. ...+......||+|++|+|++.|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 11 01111 233445578999999999998874
No 156
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.44 E-value=0.00051 Score=52.24 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=32.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
.++++|+.|+..+||+|....+.+.++..++.+ +.++.+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEe
Confidence 468999999999999999999999998887754 4444433
No 157
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.002 Score=49.05 Aligned_cols=101 Identities=23% Similarity=0.240 Sum_probs=63.3
Q ss_pred CcCCCEEEEEEecCCCCCCHHhHHHH---HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeec
Q 026028 105 KFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 105 ~~~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.-+||+.++.|-...|++|...-..+ .++++-+++. +.++-+.... +.. + .|. . |..
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------skp-v-~f~--~-g~k------- 98 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------SKP-V-LFK--V-GDK------- 98 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------Ccc-e-Eee--c-Cce-------
Confidence 34689999999999999998665544 4566666554 6666665431 110 0 010 0 000
Q ss_pred CCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
........+.+-+ .++++|++++.|++|+-+....|.+++++..
T Consensus 99 -ee~~s~~ELa~kf----------~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl 142 (182)
T COG2143 99 -EEKMSTEELAQKF----------AVRSTPTFVFFDKTGKTILELPGYMPPEQFL 142 (182)
T ss_pred -eeeecHHHHHHHh----------ccccCceEEEEcCCCCEEEecCCCCCHHHHH
Confidence 0000111222211 2677799999999999999999999999877
No 158
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.41 E-value=0.00096 Score=48.87 Aligned_cols=42 Identities=12% Similarity=0.004 Sum_probs=29.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC--CeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vi~Vs~D 150 (244)
+.+.+||.|+++| |.|.. .|+..+|..+|... .+.|--|.+|
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~ 60 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIK 60 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecc
Confidence 4578999999955 55554 47788888777543 2666667765
No 159
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.30 E-value=0.0031 Score=47.21 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=64.3
Q ss_pred EEEEEEec--CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCC
Q 026028 110 VLLIVNVA--SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 110 ~vll~F~~--~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
..||.|-+ .-+|-+....-.|.++.++|.+..+.++.|.+| .. .+.+ .+|+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD--------~~---~~LA-~~fg--------------- 88 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE--------QS---EAIG-DRFG--------------- 88 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC--------CC---HHHH-HHcC---------------
Confidence 45555553 367778878888999999997544889999877 22 2333 4444
Q ss_pred chhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
|..+|+++++ ++|+++.+..|..+.+++. .|+++|.
T Consensus 89 -------------------V~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 89 -------------------VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred -------------------CccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 3334987777 9999999999999999999 9998885
No 160
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.13 E-value=0.0023 Score=42.66 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.1
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+..||++||++|+...+.|.++ ++.+-.|++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 5679999999999887777554 3444456655
No 161
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.08 E-value=0.0018 Score=54.56 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~ 140 (244)
...|+|.|+|+||+..+...|.+.+..++|+++
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 468999999999999999999999877776654
No 162
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.07 E-value=0.0014 Score=44.63 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=27.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.|+++|||+|....+.|.++. ... .++++-|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL 36 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC
Confidence 46789999999999999998875 222 2677777654
No 163
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.98 E-value=0.013 Score=49.07 Aligned_cols=38 Identities=5% Similarity=0.124 Sum_probs=29.3
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEE
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~V 147 (244)
.+|.+|+.|.-..||+|+....++.++.+. . +++|.-+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~i 153 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHI 153 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEE
Confidence 568899999999999999999998877653 1 2555444
No 164
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.95 E-value=0.0044 Score=40.63 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.7
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|..|+++||++|+...+.|.+ .++.+..+++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 456889999999987766644 46788888776
No 165
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.94 E-value=0.003 Score=48.96 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=19.5
Q ss_pred CeeecCCcCCCEEEEEEecCCCCCCHHhHH
Q 026028 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYS 128 (244)
Q Consensus 99 ~~v~L~~~~gk~vll~F~~~~C~~C~~~~~ 128 (244)
+.+....-.+|+++|.+.++||..|..+..
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 334444557899999999999999997664
No 166
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.88 E-value=0.0033 Score=42.36 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.4
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEE
Q 026028 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 116 ~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~V 147 (244)
++.+|+.|......++++.++++ ..++++-+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~ 36 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIIDI 36 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc
Confidence 67789999988899999888874 33555544
No 167
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.80 E-value=0.0023 Score=52.88 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=31.2
Q ss_pred cCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 106 ~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
-.||.+|+.|....||+|+...+++.++.+ .|++|..+..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~ 144 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAF 144 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEec
Confidence 357899999999999999999988877643 4577766543
No 168
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.014 Score=47.02 Aligned_cols=84 Identities=13% Similarity=0.242 Sum_probs=62.7
Q ss_pred cceEEEcCCCCeeecCCc-CCC--EEEEEEe-----cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCCh
Q 026028 89 YDFTVKDIDGKDVPLSKF-KGK--VLLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 89 pdf~l~~~~g~~v~L~~~-~gk--~vll~F~-----~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~ 160 (244)
-+..+...+| +.+|.|+ .|| .+|..|. ..-|+.|.....++.-...-+...++.++.|+-- ..
T Consensus 53 K~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl 123 (247)
T COG4312 53 KDYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PL 123 (247)
T ss_pred ceeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cH
Confidence 3555666677 4688885 676 3333343 3469999999999987777788888999999843 77
Q ss_pred HHHHHHHHHhcCCCcceeeecC
Q 026028 161 PEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d 182 (244)
+++..+- ++.|..||+++..+
T Consensus 124 ~~l~~~k-~rmGW~f~w~Ss~~ 144 (247)
T COG4312 124 EELVAYK-RRMGWQFPWVSSTD 144 (247)
T ss_pred HHHHHHH-HhcCCcceeEeccC
Confidence 8888887 78899999996544
No 169
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.0014 Score=59.58 Aligned_cols=60 Identities=18% Similarity=0.378 Sum_probs=44.1
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCC--eEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC-ccee
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF 178 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~-~p~l 178 (244)
+.-+|.|+++||+.|+...|.++++.+...+.. +.|-+|.+- .++-... +.++++. ||.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~l-CRef~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKL-CREFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhh-HhhcCCCCCcee
Confidence 467899999999999999999999998887653 566677763 2233333 4777765 5555
No 170
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=96.70 E-value=0.024 Score=41.72 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=61.6
Q ss_pred cCCcCCC-EEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCC-CCChHHHHHHHHHhcCCCcceee
Q 026028 103 LSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE-PGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 103 L~~~~gk-~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~-~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
|+++++| -+||.|- ...-+.-..++..|++....+.++.+.++.|.-+...... .-+........ ++|+++
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~----- 76 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIP----- 76 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCC-----
Confidence 5666664 3444454 3344456677888888888899998888888543211100 01122222222 333321
Q ss_pred ecCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHH
Q 026028 180 KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQK 240 (244)
Q Consensus 180 d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~ 240 (244)
.+ ..+.+||+|||.+..++....+.+++- .|+.
T Consensus 77 -------------------~~---------~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 77 -------------------PG---------GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred -------------------CC---------ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 00 156899999999999998888777766 5543
No 171
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.52 E-value=0.0038 Score=52.53 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=29.9
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeE
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFE 143 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~ 143 (244)
...+|+||++||.+|++.-|..+++--++++.|.-
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence 37889999999999999999999888777776643
No 172
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.017 Score=51.33 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=35.3
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhhc-CCeEEEEEec
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPC 149 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~-~~~~vi~Vs~ 149 (244)
+..++.|++.||++|+...+.+.++...++. .++++..+..
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 4788899999999999999999999999874 5578887754
No 173
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.15 E-value=0.014 Score=49.06 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=34.3
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+.+|||+||-..++.|...-..|..|..+|.. +.++-|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 45899999999999999999999999999987 799988653
No 174
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.11 E-value=0.011 Score=47.52 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=26.0
Q ss_pred eecCCcCCCEEEEEEecCCCCCCHHhHHHHHH
Q 026028 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSH 132 (244)
Q Consensus 101 v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~ 132 (244)
+.+..-.++++|+.|....||+|+...+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 34443357899999999999999999988877
No 175
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.11 E-value=0.011 Score=40.68 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=29.9
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|..|..+|||+|......|+++..++. |+.+.-|+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECC
Confidence 567889999999999999999987763 4666666665
No 176
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.65 E-value=0.019 Score=42.19 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCCEEEEEEec-------CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 107 KGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~gk~vll~F~~-------~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
.|++++|.|.+ +|||.|....|.+++..++..+ +..+|-|.+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~V 66 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEV 66 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 56788888884 4999999999999998888544 577777765
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.64 E-value=0.027 Score=43.20 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=38.8
Q ss_pred eeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhc-CCeEEEEEec
Q 026028 100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPC 149 (244)
Q Consensus 100 ~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~-~~~~vi~Vs~ 149 (244)
.+.+.+-.++++|+.|+...||+|....+.+.++.+++-+ ..+.++.+.+
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3456666778999999999999999999999999999822 2377777765
No 178
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.11 Score=40.93 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=44.5
Q ss_pred EcCCCCeeecCCc-CCC-EEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 94 KDIDGKDVPLSKF-KGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 94 ~~~~g~~v~L~~~-~gk-~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
.+..|+.|...++ +.+ .+|...--..|-.|+.+...|.++..-+++.|+.+|+|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5677888998886 434 444444488999999999999999888888899999996
No 179
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.22 E-value=0.12 Score=37.04 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=48.8
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
..++++|+=..+.||.....+.++++.++...+. +.+..|.+- ....+.+.+.+++++..
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~H----------- 77 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVKH----------- 77 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--------------
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCCc-----------
Confidence 3578888777999999999999999999988765 777777653 33445555546655411
Q ss_pred CchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEE
Q 026028 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~ 225 (244)
..|..+|| ++|++++.
T Consensus 78 ----------------------eSPQ~ili-~~g~~v~~ 93 (105)
T PF11009_consen 78 ----------------------ESPQVILI-KNGKVVWH 93 (105)
T ss_dssp -----------------------SSEEEEE-ETTEEEEE
T ss_pred ----------------------CCCcEEEE-ECCEEEEE
Confidence 12888888 89999876
No 180
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.14 E-value=0.1 Score=48.78 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=28.7
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
++.-+-.|...+||+|+.....++++..+..+ +..-.|.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~ 514 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMID 514 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEE
Confidence 33445567899999999988999888887653 5555553
No 181
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.89 E-value=0.14 Score=33.11 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=22.7
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
++.|+..||+.|......|.+ .++.+..+.+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 456889999999976665544 35666666665
No 182
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.071 Score=38.85 Aligned_cols=47 Identities=11% Similarity=0.194 Sum_probs=35.5
Q ss_pred cCCc-CCCEEEEEEec--------CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 103 LSKF-KGKVLLIVNVA--------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 103 L~~~-~gk~vll~F~~--------~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
++++ +|+-+.+.|.+ +|||.|....|.+.+..+...+ ++.+|-|.+-
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 3444 67778888883 5999999999999998886554 4888877653
No 183
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.82 E-value=0.078 Score=35.65 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=25.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.|...|||.|......|+++.. .++++-|..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 466889999999988888877644 3566666654
No 184
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.82 E-value=0.072 Score=33.75 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=23.1
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.|...|||.|......| ++.|+..-.+.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence 4668899999999777766 3345666666665
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.52 E-value=0.068 Score=41.61 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=35.0
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
.++++|+.|+...||+|....+.+.++.+++++ ++.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence 578999999999999999999999999999854 366655543
No 186
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.84 Score=37.64 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=39.0
Q ss_pred EcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEE
Q 026028 94 KDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144 (244)
Q Consensus 94 ~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~v 144 (244)
...+++.+...+..++++++.|.-..||+|...++.+.+.+...++..+.+
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~ 120 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVL 120 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEE
Confidence 344566666666666899999999999999999999999777776654333
No 187
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.39 E-value=0.11 Score=33.39 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=23.0
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.|...|||.|......|.+. ++.+.-+.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECC
Confidence 4568899999999887777654 3555556554
No 188
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.30 E-value=0.14 Score=35.21 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=26.1
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.|..+|||+|......|.++..++. ++.+.-+.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 456789999999988888887765443 3455555554
No 189
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.87 E-value=0.19 Score=34.15 Aligned_cols=32 Identities=9% Similarity=0.317 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|..|..+|||+|......|. ++|+.+-.|.+|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC
Confidence 45677899999997666663 356777777766
No 190
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.87 E-value=0.19 Score=33.83 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=24.7
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+.-|+.|..+|||+|......|.+ .|+.+..+.+|
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 334567889999999987777753 35666666665
No 191
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.83 E-value=0.3 Score=32.15 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=23.0
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|..|..++||.|......|++ .|+.+-.+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 456889999999987777754 35666666665
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.56 E-value=0.53 Score=42.39 Aligned_cols=72 Identities=7% Similarity=0.120 Sum_probs=54.5
Q ss_pred ccccccCCcccceEEEcCCCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCC
Q 026028 79 HATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (244)
Q Consensus 79 ~~~~~~g~~~pdf~l~~~~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~ 151 (244)
.+++..++.+-.+.+.-.+|+.++|.+++|..=+|...++- .+|...+...+...+++.++||.||-|..+.
T Consensus 267 ~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 267 MSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred HHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 45556677777777777778899999999964333333333 5777788888889999999999999998763
No 193
>PHA03050 glutaredoxin; Provisional
Probab=93.45 E-value=0.17 Score=36.59 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=22.8
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
|+.|..+|||+|......|+++.-+. ..++++-|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~--~~~~~i~i~ 49 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR--GAYEIVDIK 49 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc--CCcEEEECC
Confidence 55689999999997777776653221 125555553
No 194
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.30 E-value=0.51 Score=43.68 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=42.0
Q ss_pred ccccCCcccce--EEEcCCCCeeecCC--------cCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEE
Q 026028 81 TAATEKSLYDF--TVKDIDGKDVPLSK--------FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 81 ~~~~g~~~pdf--~l~~~~g~~v~L~~--------~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~V 147 (244)
.+..|..+..| .+.+..|....|++ +.++.-+..|...+||+|+.....++++..+.+ ++..-.|
T Consensus 79 g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 79 GIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred ecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 34455555555 23344454444443 234455778889999999998999988887654 3666666
No 195
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.17 E-value=0.16 Score=41.09 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=32.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHH---HHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vi~Vs~D 150 (244)
.|++.|+.|+...||+|...-+.+ ..+.+.+.+. +.++-+.++
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEeccc
Confidence 478889999999999999887765 7777777653 666665543
No 196
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.17 E-value=0.28 Score=32.80 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=16.6
Q ss_pred EEEEecCCCCCCHHhHHHHHH
Q 026028 112 LIVNVASRCGLTPSNYSELSH 132 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~ 132 (244)
|..|+.+|||.|......|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS 21 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH
Confidence 356789999999987777764
No 197
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.1 Score=42.09 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=37.5
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+.+.-||.|++.|.|-|....|.+.+|..+|...++.+=.|.+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG 186 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG 186 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence 33588999999999999999999999999999887777666543
No 198
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.54 Score=31.88 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=27.4
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
+..|.-++||+|......|. .+|+...-|.++ .+..++..+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~------~~~~~~~~~~~ 45 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVD------DDEPEEAREMV 45 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEec------CCcHHHHHHHH
Confidence 45677889999997776665 455655555554 12334555666
No 199
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.52 E-value=0.69 Score=30.40 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=22.7
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|..|..++||.|......|++ .|+.+-.+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 345778999999987777764 45666666655
No 200
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.03 E-value=1 Score=41.68 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=41.1
Q ss_pred ccccCCcccceE--EEcCCCCeeecCC--------cCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEE
Q 026028 81 TAATEKSLYDFT--VKDIDGKDVPLSK--------FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 81 ~~~~g~~~pdf~--l~~~~g~~v~L~~--------~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~V 147 (244)
.+..|..+..|- +.+..|....|++ +.++.-+..|....||+|+.....++++..+.+ ++..-.|
T Consensus 80 g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i 154 (515)
T TIGR03140 80 GIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI 154 (515)
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE
Confidence 334455554442 3344444444433 344556778899999999988888888887765 3555554
No 201
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.96 E-value=0.45 Score=31.28 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=22.4
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
..|...+||.|......|.+ .|+.+-.+.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 45778999999987777753 45666666665
No 202
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.88 E-value=0.52 Score=30.88 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=22.4
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.|..+|||.|......|++ .|+.+..+.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 456788999999987666653 34555556655
No 203
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=91.86 E-value=0.92 Score=33.84 Aligned_cols=90 Identities=12% Similarity=0.071 Sum_probs=57.4
Q ss_pred CEEEEEEecC--CCC-CCH-HhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCC
Q 026028 109 KVLLIVNVAS--RCG-LTP-SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 109 k~vll~F~~~--~C~-~C~-~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
+.-+|.|.-. .|. -+. .....|.++.++|+++.+.++.+..+ .... +. +.+++.
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~--------~~~~---~~-~~fgl~---------- 78 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAG--------AQLD---LE-EALNIG---------- 78 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCc--------ccHH---HH-HHcCCC----------
Confidence 3555656532 333 243 45688899999999887788888655 2222 33 444431
Q ss_pred CCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEE-cCCCCChhhHH-HHHHHHh
Q 026028 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER-YPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~-~~g~~~~~~l~-~i~~lL~ 243 (244)
+. ..|.+++++.++. .|. +.|..+.+.+. .++++++
T Consensus 79 ~~----------------------~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 79 GF----------------------GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred cc----------------------CCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 00 0188899998876 565 77888888888 8887764
No 204
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.67 E-value=0.46 Score=33.63 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.0
Q ss_pred EEEEecCCCCCCHHhHHHHHH
Q 026028 112 LIVNVASRCGLTPSNYSELSH 132 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~ 132 (244)
|+.|..+|||+|......|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 445889999999977666554
No 205
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.92 E-value=1.4 Score=31.96 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=25.8
Q ss_pred CEEEEEEecCCCCCCHHhHHHHHHHHHHhh
Q 026028 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYK 138 (244)
Q Consensus 109 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~ 138 (244)
|.+||-|..+.|+.|...-..|.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999988888888877764
No 206
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.60 E-value=0.95 Score=31.86 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCCEEEEEEec----CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+.+.|+|+-.+ +|||+|......|+++ |+.+..+.++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~ 50 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVL 50 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECC
Confidence 34566665443 7999999777766553 3445455554
No 207
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.96 E-value=0.44 Score=32.42 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=29.1
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|..|+...||+|....+.+.++.+...+ ++.+..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4578899999999999999998754443 4777666554
No 208
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.87 E-value=1.2 Score=32.86 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=40.6
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
..|.|||-|.-.|-|.|..+-..|.+..+...+- .+|.-+.+ .+...|. +-|++..
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdi-----------deV~~~~-~~~~l~~ 77 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDI-----------DEVPDFV-KMYELYD 77 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEec-----------chhhhhh-hhhcccC
Confidence 3579999999999999999999999999988663 34444433 3556665 5555543
No 209
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.82 E-value=1.5 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=17.8
Q ss_pred CCCEEEEEEec----CCCCCCHHhHHHHHHH
Q 026028 107 KGKVLLIVNVA----SRCGLTPSNYSELSHL 133 (244)
Q Consensus 107 ~gk~vll~F~~----~~C~~C~~~~~~l~~l 133 (244)
++++|+|+--. +|||+|......|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 45666664332 6999999777666554
No 210
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=0.23 Score=40.24 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=33.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+++.+++.||+.||..|...-..+.++.+.+ .++.++.+..|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7789999999999999997777777777666 44778877655
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=88.81 E-value=1.7 Score=33.71 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=27.8
Q ss_pred CCE-EEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 108 GKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 gk~-vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+++ +|+.|..............++++.++++++ +.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~ 136 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD 136 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH
Confidence 445 666665444555667777788888888765 777777543
No 212
>PRK10638 glutaredoxin 3; Provisional
Probab=88.77 E-value=1.7 Score=29.41 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=21.6
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|..|...|||+|......|++ .|+..--+.+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 445678999999987777764 34444445555
No 213
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.92 Score=42.78 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=19.9
Q ss_pred CcCCCEEEEEEecCCCCCCHHhH
Q 026028 105 KFKGKVLLIVNVASRCGLTPSNY 127 (244)
Q Consensus 105 ~~~gk~vll~F~~~~C~~C~~~~ 127 (244)
.-++||++|...++||..|..+.
T Consensus 40 ~~edkPIflSIGys~CHWChVM~ 62 (667)
T COG1331 40 KEEDKPILLSIGYSTCHWCHVMA 62 (667)
T ss_pred HHhCCCEEEEeccccccchHHHh
Confidence 34689999999999999999765
No 214
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=87.71 E-value=0.44 Score=38.95 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=31.1
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
.|.+ +|.|+++|||.|....+++.++..--.+.++.|-.|.
T Consensus 39 ~gew-mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD 79 (248)
T KOG0913|consen 39 TGEW-MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD 79 (248)
T ss_pred chHH-HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence 4555 5779999999999999999888766556666655443
No 215
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=86.43 E-value=1.3 Score=31.98 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=31.4
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
.|..++|+.|+....-|++ +|+.+-.+.+. ..+.+.+++.++. .+.+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence 4668999999977766654 34555555443 2245778888888 55454
No 216
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.77 E-value=1.6 Score=31.01 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=30.5
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
..|..++|+.|+.....|++ +|+.+-.+.+. ..+.+.+++.++. .+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence 45778999999977766654 34444444432 2245778888887 4544
No 217
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.56 E-value=1.4 Score=32.83 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=32.5
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
+..|...+|+.|+.....|.+ .|+.+-.+.+. ..+.+.+++.+++ +..+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~g 52 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIF----SSPLTIDEIKQIL-RMTEDG 52 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeecc----CChhhHHHHHHHH-HHhcCC
Confidence 345668999999976655543 45555555543 2245778888888 554433
No 218
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=85.40 E-value=1.6 Score=31.73 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=33.8
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
.|+..+|+.|+.....|++ .|+++..+.+. ..+.+.+++.+++ +..+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence 5678999999977776655 45555555554 2345778888888 5656433
No 219
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=85.38 E-value=2.1 Score=31.06 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=33.1
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
..|+..+|+.|+.....|++ .|+.+-.+.+. ..+.+.+++.+|+ +..+..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~ 52 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENG 52 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence 35668999999977766644 45555555543 2245788899998 555443
No 220
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.16 E-value=5.6 Score=37.22 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=27.4
Q ss_pred CCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEE
Q 026028 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 104 ~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~V 147 (244)
.++++.+.|+.|+...|..|.....-|+++. ++.++ +.+..+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~ 403 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAV 403 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEe
Confidence 3456667788888888989986666666665 33443 555444
No 221
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=84.95 E-value=11 Score=27.20 Aligned_cols=24 Identities=0% Similarity=0.007 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHhh-cCCeEEEEEe
Q 026028 124 PSNYSELSHLYEKYK-TQGFEILAFP 148 (244)
Q Consensus 124 ~~~~~~l~~l~~~~~-~~~~~vi~Vs 148 (244)
......+.++.++|+ ++ +.++.+.
T Consensus 34 ~~~~~~~~~vAk~fk~gk-i~Fv~~D 58 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK-LNFAVAD 58 (111)
T ss_pred HHHHHHHHHHHHHCcCCe-EEEEEEc
Confidence 345678888999998 55 6666654
No 222
>PRK10824 glutaredoxin-4; Provisional
Probab=84.26 E-value=2.9 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=18.5
Q ss_pred CCCEEEEEEec----CCCCCCHHhHHHHHHH
Q 026028 107 KGKVLLIVNVA----SRCGLTPSNYSELSHL 133 (244)
Q Consensus 107 ~gk~vll~F~~----~~C~~C~~~~~~l~~l 133 (244)
+.++|||+--. +|||+|......|+++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 34566664433 4999999877777664
No 223
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.92 E-value=1.2 Score=30.07 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=36.7
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
|+.|....|+.|......|.++..+ .++++-.|.++ +.++ +. ++|+...|++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~--------~d~~---l~-~~Y~~~IPVl~ 54 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID--------EDPE---LF-EKYGYRIPVLH 54 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT--------TTHH---HH-HHSCTSTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC--------CCHH---HH-HHhcCCCCEEE
Confidence 5667789999999888888775443 34788888876 3333 44 68888777764
No 224
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=83.92 E-value=2.1 Score=32.63 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.4
Q ss_pred eeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 211 FEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 211 P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
-..+++|++|+|.....|..+..++.
T Consensus 148 SaivVlDk~G~VkfvkeGaLt~aevQ 173 (184)
T COG3054 148 SAVVVLDKDGRVKFVKEGALTQAEVQ 173 (184)
T ss_pred ceEEEEcCCCcEEEEecCCccHHHHH
Confidence 45799999999999999999988877
No 225
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=83.75 E-value=2.7 Score=30.01 Aligned_cols=48 Identities=4% Similarity=0.069 Sum_probs=31.8
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
..|+.++|+.|+.....|.+. +..++++-+.-+ +-+.+++.+++ ++.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~------p~s~~eL~~~l-~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD------GLDAATLERWL-AKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC------CCCHHHHHHHH-HHhC
Confidence 457789999999777666442 222444444433 55889999998 5555
No 226
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=81.91 E-value=3.2 Score=33.08 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=34.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
+..-||+.||-..-..|+.+-.+|..|.+++-+ ..+|-|+.
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvna 123 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNA 123 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEec
Confidence 456889999999999999999999999998855 78888863
No 227
>PRK12559 transcriptional regulator Spx; Provisional
Probab=81.66 E-value=3.5 Score=30.79 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=31.7
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
+..|...+|+.|+.....|.+ .|+.+-.+.+. ..+-+.+++.+|+ +..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~----~~~~s~~el~~~l-~~~~ 50 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIV----SNSMTVDELKSIL-RLTE 50 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEee----CCcCCHHHHHHHH-HHcC
Confidence 345678999999976655543 34444444443 2355889999998 5533
No 228
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.48 E-value=3.4 Score=27.56 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=29.5
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
+.|++..||-|......|.++.-. .+.|-|. ++-..+++|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt---------~Sm~NlKrFl 45 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEIT---------ESMANLKRFL 45 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehh---------hhhhhHHHHH
Confidence 458899999999888877766332 4555554 3667788887
No 229
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=80.52 E-value=3 Score=34.20 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEECCCCcEEEEcCCCCChhhHH
Q 026028 212 EKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 212 ~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
.+||||+.|+|+....|..+|++++
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve 274 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVE 274 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHH
Confidence 4799999999999999999999887
No 230
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=79.55 E-value=5.6 Score=31.82 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=40.7
Q ss_pred EEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 110 ~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
-.+..|.-..|+.|...+..+.. .+..+.|..|..+ .+++.+..|+ .+++++-..+
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA-~~~~Idp~~V 165 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWA-NRHQIDPAKV 165 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHH-HHcCCCHHHe
Confidence 45566777999999987777733 3445888888643 4788999999 6777765444
No 231
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=79.08 E-value=1.5 Score=35.08 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=36.0
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
+|-||||+.|...-|.|......|+.+.-+|.+ +++|-|.
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 467999999999999999999999999999987 6788774
No 232
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=77.88 E-value=26 Score=29.62 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred ccCCcccceEEEcCCCCeeecCCcCC-CEEEEEEecCCCCCCHHhHHHHHHHHHHhh--cCCeEEEEEecCCCCCCCCCC
Q 026028 83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYK--TQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~g~~v~L~~~~g-k~vll~F~~~~C~~C~~~~~~l~~l~~~~~--~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
+.=+.+|-|++.|.+|+++-...-.| +.+-+++ -.-...-..|+++.++-. ..+++|+.|++|
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~-----s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~--------- 142 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLC-----FRQEDAEAFLAQLRKRKPEVGSQAKVVPITLD--------- 142 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCCceEEEEE-----CCHHHHHHHHHHHHhhCccccCCceEEEEEHH---------
Confidence 34567999999999999987765545 4444422 211112334444444433 235899999876
Q ss_pred hHHHHHHHHHhcCCCccee
Q 026028 160 NPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l 178 (244)
.+.+.. .-++.|.++
T Consensus 143 --~vYkl~--~e~l~F~fi 157 (270)
T TIGR00995 143 --QVYKLK--VEGIGFRFL 157 (270)
T ss_pred --HHHHHh--hcCccEEEe
Confidence 233433 334777777
No 233
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=77.71 E-value=5.8 Score=29.64 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=32.6
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
..|...+|+.|+....-|. ++|+.+-.+.+. .++-+.+++.+|+ +..+..+
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~----~~~~s~~eL~~~l-~~~~~~~ 53 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLN-------AHQLSYKEQNLG----KEPLTKEEILAIL-TKTENGI 53 (132)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEECC----CCCCCHHHHHHHH-HHhCCCH
Confidence 3566899999997665553 345555555443 2255888999998 5555443
No 234
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=77.15 E-value=11 Score=26.96 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=13.7
Q ss_pred CCEEEEEEecCCCCCCHHh
Q 026028 108 GKVLLIVNVASRCGLTPSN 126 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~ 126 (244)
.++||| |-.+||++|...
T Consensus 13 ~~~VVi-fSKs~C~~c~~~ 30 (104)
T KOG1752|consen 13 ENPVVI-FSKSSCPYCHRA 30 (104)
T ss_pred cCCEEE-EECCcCchHHHH
Confidence 446554 888999999973
No 235
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=76.39 E-value=3.9 Score=34.06 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=28.9
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~ 140 (244)
.||+.+++.-+.|||.|..+.=.|-....+|.+-
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 6899999999999999998887777777777763
No 236
>PTZ00062 glutaredoxin; Provisional
Probab=75.89 E-value=7.7 Score=31.35 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=22.4
Q ss_pred CCCEEEEEEec----CCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+.++|+|+--+ ++||+|+.....|++ .|+....+.++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 45677664443 588888876666653 34555555554
No 237
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=75.09 E-value=26 Score=25.13 Aligned_cols=33 Identities=6% Similarity=-0.110 Sum_probs=21.5
Q ss_pred eeEEEECCCCcEEEE-cCCCCChhhHH-HHHHHHh
Q 026028 211 FEKFLVDKNGKVIER-YPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 211 P~~~lID~~G~I~~~-~~g~~~~~~l~-~i~~lL~ 243 (244)
|...+++-++.-.+. ..+..+++.++ .++++++
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 777788776533343 44666777787 7777654
No 238
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=74.83 E-value=7.4 Score=29.03 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=34.6
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
..|+|+|-|.-.|-|.|..+-..|.+..++.++- ..|..|.+|
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4689999999999999999989999999988764 556666554
No 239
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=73.16 E-value=23 Score=31.82 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=30.8
Q ss_pred cccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHH
Q 026028 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLV 242 (244)
Q Consensus 207 i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL 242 (244)
+..+|..|+|+..|+-+.+..|....++|. .|++.+
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred cccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 444599999999999999999999988888 887764
No 240
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=71.56 E-value=23 Score=27.59 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=45.1
Q ss_pred ccccccCCcccceEEEc-CCCCeeecCCc---CCCEEEEEEecC-CCCCCHHhHHHHHHHH-------HHhhcCC-----
Q 026028 79 HATAATEKSLYDFTVKD-IDGKDVPLSKF---KGKVLLIVNVAS-RCGLTPSNYSELSHLY-------EKYKTQG----- 141 (244)
Q Consensus 79 ~~~~~~g~~~pdf~l~~-~~g~~v~L~~~---~gk~vll~F~~~-~C~~C~~~~~~l~~l~-------~~~~~~~----- 141 (244)
...+.+|..+|+..+.- .||+++.|.+. .|++=|+.|-+. -.+.+...+..|.+.. .+|...+
T Consensus 27 a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 27 AGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp BTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred ccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 35677999999999988 69999999874 789888888854 3445544555555433 3554432
Q ss_pred -eEEEEEecC
Q 026028 142 -FEILAFPCN 150 (244)
Q Consensus 142 -~~vi~Vs~D 150 (244)
++++.|...
T Consensus 107 ~~~~~~I~~~ 116 (169)
T PF07976_consen 107 VFDVLLIHSS 116 (169)
T ss_dssp SEEEEEEESS
T ss_pred eeEEEEEecC
Confidence 888888753
No 241
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=68.12 E-value=9.7 Score=34.25 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=22.6
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
|+.|..+|||+|......|++ +|+..-.|.+|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 567889999999977666654 35555556555
No 242
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=67.74 E-value=6.9 Score=30.55 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=30.9
Q ss_pred EEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 111 vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+|.+|+..-||+|-...+.|.++.+++.+-.++...+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4667888999999999999999999995544555555543
No 243
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=67.73 E-value=56 Score=25.36 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCcccceEEEc-CCCCeeecCCc---CCCEEEEEEecCC-CCCCHHhHHHHHHHHHHh
Q 026028 85 EKSLYDFTVKD-IDGKDVPLSKF---KGKVLLIVNVASR-CGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 85 g~~~pdf~l~~-~~g~~v~L~~~---~gk~vll~F~~~~-C~~C~~~~~~l~~l~~~~ 137 (244)
|..+|++.+.. .||+++.|.+. .|++=|+.|-+.- ++..+ ..|.++.+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~---~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQK---SRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHH---HHHHHHHHHH
Confidence 56788888888 58999988764 6899999887653 33333 3444444443
No 244
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=65.11 E-value=17 Score=25.87 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=22.5
Q ss_pred EecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 115 NVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 115 F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
||-.+||.|......+.++ + ....++++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d--~~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-D--RGGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-C--CCCCEEEEECC
Confidence 6788999999888888776 1 12337777773
No 245
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.84 E-value=82 Score=27.57 Aligned_cols=97 Identities=16% Similarity=0.306 Sum_probs=57.7
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+||.++.|.+..--.=. ..+.++...|+++|..|+-...|-|.. .-.++++.|. ++.+. +++... ..+.
T Consensus 136 ~~~p~Vil~vGVNG~GKT---TTIaKLA~~l~~~g~~VllaA~DTFRA---aAiEQL~~w~-er~gv--~vI~~~-~G~D 205 (340)
T COG0552 136 EKKPFVILFVGVNGVGKT---TTIAKLAKYLKQQGKSVLLAAGDTFRA---AAIEQLEVWG-ERLGV--PVISGK-EGAD 205 (340)
T ss_pred CCCcEEEEEEecCCCchH---hHHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHH-HHhCC--eEEccC-CCCC
Confidence 457888888765543333 345566666777888999888884421 2356777787 66554 444321 1222
Q ss_pred CchhhHHHhhhcc-CCCcCCccccceeEEEECCCCcE
Q 026028 187 NTAPVYQFLKSSA-GGFLGDLVKWNFEKFLVDKNGKV 222 (244)
Q Consensus 187 ~~~~~~~~~~~~~-~~~~~~~i~~~P~~~lID~~G~I 222 (244)
-.+-.|+.+.... .+ --.+|||--||+
T Consensus 206 pAaVafDAi~~Akar~---------~DvvliDTAGRL 233 (340)
T COG0552 206 PAAVAFDAIQAAKARG---------IDVVLIDTAGRL 233 (340)
T ss_pred cHHHHHHHHHHHHHcC---------CCEEEEeCcccc
Confidence 3345566544321 12 226999999997
No 246
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.74 E-value=12 Score=29.26 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhh
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYK 138 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~ 138 (244)
|.+|+-..||.|-...+.|.++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 456678899999999999999999984
No 247
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=59.59 E-value=56 Score=25.27 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=56.0
Q ss_pred ccceEEEcCCCCeeecCCcCC-CEEEEEEecCCCC-------CCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCC
Q 026028 88 LYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCG-------LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 88 ~pdf~l~~~~g~~v~L~~~~g-k~vll~F~~~~C~-------~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~ 159 (244)
.|..++++...-++...+++| |.||++ .+.|- .-..+++.+++++..|.++++.++.=+. |..+.|.
T Consensus 22 ~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsa---G~~~~D~ 96 (190)
T KOG2961|consen 22 LPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSA---GLTEYDH 96 (190)
T ss_pred ccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCc---CccccCC
Confidence 344444444444455556556 555553 34453 3456889999999999988776665443 2333333
Q ss_pred hHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhh
Q 026028 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~ 196 (244)
.....+..+++ ...|++.-......-....|.++-
T Consensus 97 d~s~Ak~le~k--~gIpVlRHs~kKP~ct~E~~~y~~ 131 (190)
T KOG2961|consen 97 DDSKAKALEAK--IGIPVLRHSVKKPACTAEEVEYHF 131 (190)
T ss_pred chHHHHHHHHh--hCCceEeecccCCCccHHHHHHHh
Confidence 44444444344 455666443333334455555443
No 248
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=58.11 E-value=26 Score=27.38 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=44.5
Q ss_pred CEEEEEEecCCCCC-CHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 109 KVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 109 k~vll~F~~~~C~~-C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
|-+++++=.|=-+. -....|++.+..++.++.|+.++-+|-+ +...+..++ ++++++|-.-
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi~~ 90 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFIYR 90 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCceeec
Confidence 46777776553332 2234689999999999999999999854 777888887 7878776543
No 249
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.20 E-value=58 Score=27.96 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=56.0
Q ss_pred ecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeec
Q 026028 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 102 ~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.+.+.+|+.|||. +..-+.-+ ++..+|.++|..++-+.++ .+..++..+.. ++.|.-+-+..|.
T Consensus 32 ~~k~v~g~~vLIT--Ggg~GlGr-------~ialefa~rg~~~vl~Din------~~~~~etv~~~-~~~g~~~~y~cdi 95 (300)
T KOG1201|consen 32 PLKSVSGEIVLIT--GGGSGLGR-------LIALEFAKRGAKLVLWDIN------KQGNEETVKEI-RKIGEAKAYTCDI 95 (300)
T ss_pred chhhccCCEEEEe--CCCchHHH-------HHHHHHHHhCCeEEEEecc------ccchHHHHHHH-HhcCceeEEEecC
Confidence 4566788888872 22222222 2334555566656555555 22444444444 3324334444332
Q ss_pred CCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 026028 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~ 236 (244)
. +.+++.++-+..+.+.| +-.+||+--|.+-....-..+.++++
T Consensus 96 s-~~eei~~~a~~Vk~e~G----------~V~ILVNNAGI~~~~~ll~~~d~ei~ 139 (300)
T KOG1201|consen 96 S-DREEIYRLAKKVKKEVG----------DVDILVNNAGIVTGKKLLDCSDEEIQ 139 (300)
T ss_pred C-CHHHHHHHHHHHHHhcC----------CceEEEeccccccCCCccCCCHHHHH
Confidence 2 22334444444555555 55799999898765544445555555
No 250
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=56.00 E-value=28 Score=25.06 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=31.5
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
.|+...|..|+.....|++ .|+++..+.+- ..+-+.+++.+++ +..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l-~~~g~ 50 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIF-AKLGL 50 (114)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHH-HHcCC
Confidence 4668899999987776654 34444444432 2345889999998 56554
No 251
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=55.38 E-value=37 Score=24.49 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=31.0
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
..|..+.|..|+....-|.+. +..++++-+--+ +-+.+++++|+ ++.+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~------p~s~~eL~~~l-~~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE------PWTAETLRPFF-GDLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC------CCCHHHHHHHH-HHcC
Confidence 356688999999776655442 222455555433 44889999998 4544
No 252
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=53.18 E-value=30 Score=32.54 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=44.2
Q ss_pred cCCcccceEEEcCCCCeeecCCcCC--CEEEEEEecCCCCCCHHhHHHHHHHHHHh-hcCCeEEEEEecC
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFKG--KVLLIVNVASRCGLTPSNYSELSHLYEKY-KTQGFEILAFPCN 150 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~g--k~vll~F~~~~C~~C~~~~~~l~~l~~~~-~~~~~~vi~Vs~D 150 (244)
.|.++-...+.|-.+....-.-.++ ..++|.|.|+.--.-++.+|.|-+|+..- -.+++.||++.-.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~ 130 (573)
T PLN02640 61 NGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYART 130 (573)
T ss_pred CCCcccceecccccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 4666655555553332211112233 47788888999888999999999998642 2246999999865
No 253
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=52.37 E-value=1.5e+02 Score=25.20 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=32.7
Q ss_pred cCCcccceEEEcCCCCeeecCCcC--CCEEEEEEecCCCCCCHHhH-HHHHHHHHHhh--cCCeEEEEEecC
Q 026028 84 TEKSLYDFTVKDIDGKDVPLSKFK--GKVLLIVNVASRCGLTPSNY-SELSHLYEKYK--TQGFEILAFPCN 150 (244)
Q Consensus 84 ~g~~~pdf~l~~~~g~~v~L~~~~--gk~vll~F~~~~C~~C~~~~-~~l~~l~~~~~--~~~~~vi~Vs~D 150 (244)
.=+.+|-|++.|.+|.++-...-. ++.+.+.|+ |+... ..|+++.++.. ..+++|+.|++|
T Consensus 71 kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 71 KLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp HHTTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred HhcCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 345799999999999998666554 566666664 44443 33455555433 346999999876
No 254
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=48.58 E-value=82 Score=21.23 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEE
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi 145 (244)
.+++||-|+..+|. .....+.++.+.+++. +.+.
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~ 50 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFG 50 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEE
Confidence 45778888887776 4556677777766553 4443
No 255
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.68 E-value=87 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=24.2
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcC-CeEEE
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQ-GFEIL 145 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vi 145 (244)
+|+..-||.|-...+.|.++.++++.. +++|.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~ 35 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIE 35 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEE
Confidence 344668999999999999999999631 34444
No 256
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=47.46 E-value=21 Score=25.60 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=41.6
Q ss_pred eeecCCcCC-CEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCC---CCCChHHHHHHHHHhcCC
Q 026028 100 DVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ---EPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 100 ~v~L~~~~g-k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~---~~~~~~~~~~~~~~~~~~ 173 (244)
.-.+++|.+ .+-||-|+ .|+.|. -..+....+++++.|+++|-++.=..... .=...+++.+.+++++++
T Consensus 27 ~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi 100 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGI 100 (107)
T ss_pred cCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCC
Confidence 335567765 46677664 466666 56666777777788888888765221111 101356777777555443
No 257
>PRK10853 putative reductase; Provisional
Probab=46.86 E-value=39 Score=24.59 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=31.7
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
..|....|..|+..+.-|.+ .|+.+..+.+- ..+-+.+++.+|+ ++.++
T Consensus 3 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~----k~p~s~~eL~~~l-~~~g~ 51 (118)
T PRK10853 3 TLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYR----VDGLDSELLQGFI-DELGW 51 (118)
T ss_pred EEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehc----cCCcCHHHHHHHH-HHcCH
Confidence 34567899999987776654 34444444432 2244889999998 56554
No 258
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=45.30 E-value=63 Score=20.51 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=19.7
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
.|...|||.|....-.|.+ ++..++++-|..
T Consensus 3 ly~~~~~p~~~rv~~~L~~-----~gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-----AGITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-----cCCCcEEEEeCC
Confidence 3567899999876655543 233466666643
No 259
>PRK12359 flavodoxin FldB; Provisional
Probab=43.92 E-value=74 Score=24.87 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=7.9
Q ss_pred CCChhhHH-HHHHHH
Q 026028 229 TTSPFQIE-DIQKLV 242 (244)
Q Consensus 229 ~~~~~~l~-~i~~lL 242 (244)
..+++.++ +++++.
T Consensus 151 ~~t~~ri~~W~~~~~ 165 (172)
T PRK12359 151 DLSDERIQQWCEQIL 165 (172)
T ss_pred hhhHHHHHHHHHHHH
Confidence 34556666 666553
No 260
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=43.26 E-value=2e+02 Score=27.47 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=36.9
Q ss_pred cccccCCcccceEEEc-CCCCeeecCC-c--CCCEEEEEEecC-CCCCCHHhHHHHHH
Q 026028 80 ATAATEKSLYDFTVKD-IDGKDVPLSK-F--KGKVLLIVNVAS-RCGLTPSNYSELSH 132 (244)
Q Consensus 80 ~~~~~g~~~pdf~l~~-~~g~~v~L~~-~--~gk~vll~F~~~-~C~~C~~~~~~l~~ 132 (244)
.....|..+|+..+.. .+++++.|.+ + .|++.|+.|-.. ..+.....+..+.+
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~ 518 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCE 518 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHH
Confidence 4567899999999998 5888887765 3 688999988754 33455444444433
No 261
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=42.94 E-value=50 Score=23.81 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=34.0
Q ss_pred CCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCC---CCCCCChHHHHHHHHHhcCC
Q 026028 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFG---GQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 119 ~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~---~~~~~~~~~~~~~~~~~~~~ 173 (244)
.|+.-...+..++..+++| |+++++|+.|... ...+.+.++..+++.+.|..
T Consensus 25 ~~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~f 79 (111)
T PF14062_consen 25 YCPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAF 79 (111)
T ss_pred CCCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4666677778888888877 4677777766221 12244668888888666543
No 262
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=42.59 E-value=69 Score=23.66 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=30.8
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~ 171 (244)
+..|....|..|+....-|++ .|+.+-.+.+- .++-+.+++.+|+ ++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~----~~p~t~~eL~~~l-~~~ 50 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDIL----KEPWHADTLRPYF-GNK 50 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEecc----CCCcCHHHHHHHH-HHc
Confidence 445668899999977766644 34444444332 2245889999998 443
No 263
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=42.14 E-value=65 Score=24.43 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=28.5
Q ss_pred CcCCCEEEE-EEecCCCCCCHHhHHHHHHHHHHhhcCCeE-EEEEecC
Q 026028 105 KFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFE-ILAFPCN 150 (244)
Q Consensus 105 ~~~gk~vll-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~-vi~Vs~D 150 (244)
++|||.+++ -|.+..-..-......|++..+++++.|++ |+.|+.|
T Consensus 47 qfKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D 94 (142)
T PF10673_consen 47 QFKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSD 94 (142)
T ss_pred hcCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 579987766 232222223333345788888899988875 4556665
No 264
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=42.00 E-value=27 Score=30.45 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=30.3
Q ss_pred cccceeEEEECC-CCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 207 VKWNFEKFLVDK-NGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 207 i~~~P~~~lID~-~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
+...|...+||+ .|+-+.++.|...++++- ++++.++
T Consensus 152 ~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 152 ISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred ccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 344599999998 588889999988888887 8888775
No 265
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=41.93 E-value=52 Score=19.90 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=20.1
Q ss_pred EEEECCCCcEEEEcCCCCChh--hHH-HHHHHH
Q 026028 213 KFLVDKNGKVIERYPPTTSPF--QIE-DIQKLV 242 (244)
Q Consensus 213 ~~lID~~G~I~~~~~g~~~~~--~l~-~i~~lL 242 (244)
.|.|++||+|...-.|..-.. ++- .|++.|
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 378999999998776655443 233 555555
No 266
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=41.45 E-value=33 Score=25.67 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=18.2
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHH-HHH
Q 026028 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQ 239 (244)
Q Consensus 206 ~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~ 239 (244)
+|.++|+++| +|+.+ .+..+.+++. .|+
T Consensus 133 ~i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id 161 (162)
T PF13462_consen 133 GITGTPTFFI---NGKYV---VGPYTIEELKELID 161 (162)
T ss_dssp T-SSSSEEEE---TTCEE---ETTTSHHHHHHHHH
T ss_pred CCccccEEEE---CCEEe---CCCCCHHHHHHHHc
Confidence 4778898777 78874 4555666666 554
No 267
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=41.21 E-value=1.2e+02 Score=25.38 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=53.6
Q ss_pred EEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCCch
Q 026028 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTA 189 (244)
Q Consensus 110 ~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~ 189 (244)
-+|| +.+..|+- -.-++.+..+|.++|+.+|-|.-+++ .+-.++.+.+ ......|-++.| |..-....
T Consensus 54 nvLL-~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~L-----~~l~~l~~~l-~~~~~kFIlf~D-DLsFe~~d 121 (249)
T PF05673_consen 54 NVLL-WGARGTGK----SSLVKALLNEYADQGLRLIEVSKEDL-----GDLPELLDLL-RDRPYKFILFCD-DLSFEEGD 121 (249)
T ss_pred ceEE-ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHHh-----ccHHHHHHHH-hcCCCCEEEEec-CCCCCCCc
Confidence 4444 33556664 23455677788889999999975522 2444555555 344567777754 33333344
Q ss_pred hhHHHhhhccCCCcCCccccceeEEEECCCC
Q 026028 190 PVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG 220 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G 220 (244)
..|+.++.-..|. +..-|..++|-..-
T Consensus 122 ~~yk~LKs~LeGg----le~~P~NvliyATS 148 (249)
T PF05673_consen 122 TEYKALKSVLEGG----LEARPDNVLIYATS 148 (249)
T ss_pred HHHHHHHHHhcCc----cccCCCcEEEEEec
Confidence 5677777544322 33346666664433
No 268
>PRK10026 arsenate reductase; Provisional
Probab=40.45 E-value=1.1e+02 Score=23.11 Aligned_cols=50 Identities=10% Similarity=0.234 Sum_probs=32.9
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
+..|+...|..|+..+.-|++. +..++++-+--+ +-+.+++.+|+ ++.+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~------ppt~~eL~~~l-~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET------PPTRDELVKLI-ADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC------CcCHHHHHHHH-HhCCC
Confidence 3456689999999877776543 222455554433 44889999998 56554
No 269
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=39.78 E-value=79 Score=22.59 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=30.6
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 113 l~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
..|....|..|+..+..|++ .|+.+..+.+- ..+-+.+++.+++ +..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~~~t~~el~~~l-~~~~~ 50 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-------AGIEPEIVEYL----KTPPTAAELRELL-AKLGI 50 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----cCCcCHHHHHHHH-HHcCC
Confidence 34668899999977665544 34444444331 2244788999998 56554
No 270
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=39.77 E-value=52 Score=22.03 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=18.8
Q ss_pred EEEECCCCcEEEEc-----CCCCChhhHH-HHHHHHh
Q 026028 213 KFLVDKNGKVIERY-----PPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 213 ~~lID~~G~I~~~~-----~g~~~~~~l~-~i~~lL~ 243 (244)
.+.||++|.|..-+ ....+.++++ .|++.+.
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHH
Confidence 58899999998544 3445677777 7777664
No 271
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=39.05 E-value=1.1e+02 Score=23.38 Aligned_cols=25 Identities=4% Similarity=-0.152 Sum_probs=15.9
Q ss_pred CCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 119 ~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
+||.|......|+++ ++.+--+.++
T Consensus 15 t~~~C~~ak~iL~~~-------~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILESF-------RVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHHC-------CCcEEEEECC
Confidence 899998766666543 4555555554
No 272
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=38.85 E-value=1.3e+02 Score=22.68 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=25.8
Q ss_pred CCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 108 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
.++-++.+|...|+.|..+..-|.+. =.+..+++..+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~---D~~~~i~f~~~q 43 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRR---DQGGRIRFAALQ 43 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHh---ccCCcEEEEecc
Confidence 36777888999999999766555443 233346777664
No 273
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.84 E-value=92 Score=26.26 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=20.7
Q ss_pred CCCCHHh-HHHHHHHHHHhhcCCeEEEEEec
Q 026028 120 CGLTPSN-YSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 120 C~~C~~~-~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
+++|..+ ...+.+..+++++.|+.++....
T Consensus 32 aGPCsie~~~~~~~~A~~lk~~g~~~~r~~~ 62 (266)
T PRK13398 32 AGPCAVESEEQMVKVAEKLKELGVHMLRGGA 62 (266)
T ss_pred EeCCcCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 6778754 45566777777777877777763
No 274
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=37.64 E-value=2.3e+02 Score=23.21 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=21.7
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 131 ~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.+..++++++|+.|+-.+- .....+..++ +++++..+++
T Consensus 26 ~~ai~~~~~~G~~~~iaTG--------R~~~~~~~~~-~~l~~~~~~I 64 (272)
T PRK10530 26 LEALARAREAGYKVIIVTG--------RHHVAIHPFY-QALALDTPAI 64 (272)
T ss_pred HHHHHHHHHCCCEEEEEcC--------CChHHHHHHH-HhcCCCCCEE
Confidence 3444455667877776652 1445566666 5666554443
No 275
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.83 E-value=54 Score=26.07 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=29.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEe
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
.+.||...|+.-...+..+.+|..-+++.|+.|+.-.
T Consensus 42 Fv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 42 FVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3456777788777788889999999999999887653
No 276
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.69 E-value=1.4e+02 Score=21.68 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=32.0
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
+-.|+.+.|..|+....-|++. +-..+++-+.-+ +-+.+++.+|+ +..+..
T Consensus 3 itiy~~p~C~t~rka~~~L~~~-----gi~~~~~~y~~~------~~s~~eL~~~l-~~~g~~ 53 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH-----GIEYTFIDYLKT------PPSREELKKIL-SKLGDG 53 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEEeecC------CCCHHHHHHHH-HHcCcc
Confidence 3446688999999776666442 112344555433 44788999998 565543
No 277
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=36.51 E-value=2.4e+02 Score=23.22 Aligned_cols=38 Identities=3% Similarity=0.035 Sum_probs=22.5
Q ss_pred HHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 132 HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 132 ~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
+..++++++|+.|+-.+- .....+.+++ ++.++..+++
T Consensus 26 ~ai~~l~~~G~~~~iaTG--------R~~~~~~~~~-~~l~~~~~~I 63 (272)
T PRK15126 26 STLARLRERDITLTFATG--------RHVLEMQHIL-GALSLDAYLI 63 (272)
T ss_pred HHHHHHHHCCCEEEEECC--------CCHHHHHHHH-HHcCCCCcEE
Confidence 333445667887777762 2555667776 6666654443
No 278
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=36.44 E-value=1e+02 Score=23.34 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 125 ~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
....-|++..+++++.+..=+.|+++ +.+.+.+..
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~--------t~~~L~~Lr 107 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVA--------TEAALQRLR 107 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH
Confidence 34566788888888877777777776 777777664
No 279
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=36.27 E-value=2.4e+02 Score=23.01 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 131 ~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.+..+++.++|+.++-.+-. +...+.... ++.+...+++
T Consensus 22 ~~~i~~l~~~G~~~~iaTGR--------~~~~~~~~~-~~~~~~~~~I 60 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATGR--------PYKEVKNIL-KELGLDTPFI 60 (256)
T ss_pred HHHHHHHHHCCCeEEEEeCC--------CHHHHHHHH-HHcCCCCCEE
Confidence 33444556678888877743 556666666 6666654443
No 280
>PRK10976 putative hydrolase; Provisional
Probab=35.93 E-value=2.4e+02 Score=23.06 Aligned_cols=39 Identities=3% Similarity=0.099 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 131 ~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.+..++++++|+.|+-.+- .....+..+. ++.++..+++
T Consensus 25 ~~ai~~l~~~G~~~~iaTG--------R~~~~~~~~~-~~l~~~~~~I 63 (266)
T PRK10976 25 KETLKLLTARGIHFVFATG--------RHHVDVGQIR-DNLEIKSYMI 63 (266)
T ss_pred HHHHHHHHHCCCEEEEEcC--------CChHHHHHHH-HhcCCCCeEE
Confidence 3334445667887777762 2445566666 5666654443
No 281
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=35.43 E-value=37 Score=25.51 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=27.1
Q ss_pred EEEEecCCCCCCHH-------hHHHHHHHHHHhhcCCeEEEEEe
Q 026028 112 LIVNVASRCGLTPS-------NYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 112 ll~F~~~~C~~C~~-------~~~~l~~l~~~~~~~~~~vi~Vs 148 (244)
=|.|-++-|..|.. .-..++++.++|...|+.||-=.
T Consensus 33 evvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 33 EVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred eEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 35688999999974 33677888888888876665444
No 282
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=35.12 E-value=61 Score=24.39 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=28.7
Q ss_pred EEEEecCCCCCCHH-------hHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPS-------NYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~-------~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
=|.|-++.|..|.. .-..++++.++|...++.||-=+.|
T Consensus 32 evvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 32 EVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred eEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 35688999999974 3367888899998888766655533
No 283
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=35.06 E-value=1.5e+02 Score=21.17 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 126 NYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 126 ~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
...-|++-.+++++.+..=+.|+++ +.+.+.+..
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~--------t~~~l~~Lr 69 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVE--------TAAALQRLR 69 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH
Confidence 4466777788888877666777776 677766654
No 284
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.05 E-value=1.3e+02 Score=24.67 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=29.9
Q ss_pred CEEEEEEe-cCCCCCCHHhHHHHHHHHHHhhcC-CeEEEEEec
Q 026028 109 KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPC 149 (244)
Q Consensus 109 k~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~vi~Vs~ 149 (244)
+.+-|++| -.-||.|-.--+.|.++..+|.+. .+++..=+.
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf 46 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPF 46 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEeccc
Confidence 34556666 568999999999999999999854 355554433
No 285
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=34.83 E-value=1.3e+02 Score=19.49 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=21.3
Q ss_pred CCCeeecCCcCCCEEEEEEecCCCCCCHHhHHHH
Q 026028 97 DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSEL 130 (244)
Q Consensus 97 ~g~~v~L~~~~gk~vll~F~~~~C~~C~~~~~~l 130 (244)
+|..+.+-++++..+.|.|.+ -|..|......+
T Consensus 15 dGGdv~lv~v~~~~V~V~l~G-aC~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLTG-ACSGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEES-SCCSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEEe-CCCCCCCHHHHH
Confidence 677778888877777777753 355665444444
No 286
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=34.79 E-value=1.2e+02 Score=23.09 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=24.1
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecC
Q 026028 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D 150 (244)
++.|..+.|+-|..-+..|+ .+|++|=.+..|
T Consensus 28 ~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~ 59 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD 59 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC
Confidence 55677899999997776663 467888777655
No 287
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.32 E-value=50 Score=32.70 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=16.2
Q ss_pred cCCCCCCHHhHHHHHHHHHHh
Q 026028 117 ASRCGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 117 ~~~C~~C~~~~~~l~~l~~~~ 137 (244)
-.|||.|.+.+..+.=-+++-
T Consensus 172 VNWcP~~~TAiSd~EVe~~e~ 192 (877)
T COG0525 172 VNWCPKCRTAISDIEVEYKEV 192 (877)
T ss_pred ccCCCccccchhhhhhcccee
Confidence 369999999888887666543
No 288
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=33.69 E-value=1.8e+02 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCC
Q 026028 127 YSELSHLYEKYKTQGFEILAFPCNQ 151 (244)
Q Consensus 127 ~~~l~~l~~~~~~~~~~vi~Vs~D~ 151 (244)
...|.++..++.+.|+.|++|.+|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4666778888999999999999984
No 289
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=33.39 E-value=84 Score=27.48 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.6
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
.||||++.|-...=+-+...+..+++...+..-.|+-+|++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 6899988887655577778888888888876666788888764
No 290
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=33.33 E-value=1.4e+02 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=26.1
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCC
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQF 152 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~ 152 (244)
.|..-.|..|+..-..|.++.++ .++..++..+|..
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYW 39 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYW 39 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT
T ss_pred EecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcc
Confidence 35577999999999999999887 3689999998744
No 291
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=32.60 E-value=2.8e+02 Score=23.51 Aligned_cols=12 Identities=33% Similarity=0.315 Sum_probs=8.7
Q ss_pred eEEEECCCC-cEE
Q 026028 212 EKFLVDKNG-KVI 223 (244)
Q Consensus 212 ~~~lID~~G-~I~ 223 (244)
.++|||++. +++
T Consensus 101 vLLlVa~~dr~~r 113 (271)
T COG1512 101 VLLLVAMNDRRVR 113 (271)
T ss_pred EEEEEEcCCCeEE
Confidence 378999988 444
No 292
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.71 E-value=72 Score=26.22 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=24.6
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHh
Q 026028 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVV 243 (244)
Q Consensus 206 ~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~ 243 (244)
+|.+.|++++ +|++ .-.|..+++.++ .|+++++
T Consensus 181 gI~gVP~fv~---d~~~--~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 181 GIRGVPTFVF---DGKY--AVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred CCccCceEEE---cCcE--eecCCCCHHHHHHHHHHHHh
Confidence 3777797666 5665 456788888888 9998875
No 293
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=31.66 E-value=1.6e+02 Score=19.76 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=10.5
Q ss_pred eeEEEECCCCcEEEE
Q 026028 211 FEKFLVDKNGKVIER 225 (244)
Q Consensus 211 P~~~lID~~G~I~~~ 225 (244)
...++.|++|.++..
T Consensus 93 ~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 568999999998753
No 294
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.53 E-value=46 Score=26.00 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=23.3
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcCCeEE
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~v 144 (244)
.|..+.|+.|-..-|.+.++..+|+++ +.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~ 31 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEF 31 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEE
Confidence 477899999999999999999999876 443
No 295
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=31.51 E-value=2.6e+02 Score=22.01 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=34.8
Q ss_pred cCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 117 ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 117 ~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
++.|-.--..-.++..+..+++=+...||.|+-+ .+.-.+..++|.++..+-
T Consensus 43 ~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvsv~~~-----~pk~del~akF~~EH~H~ 94 (181)
T COG1791 43 AEKEHIIDAYETEIDRLIRERGYKNRDVVSVSPS-----NPKLDELRAKFLQEHLHT 94 (181)
T ss_pred cchhhhHhhHHHHHHHHHHhhCCceeeEEEeCCC-----CccHHHHHHHHHHHhccC
Confidence 5556554556678888888887777899999854 233455667777544443
No 296
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=31.14 E-value=50 Score=22.19 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=16.6
Q ss_pred eeEEEECCCCcEEEEcC-CCCChhhHH-HHHH
Q 026028 211 FEKFLVDKNGKVIERYP-PTTSPFQIE-DIQK 240 (244)
Q Consensus 211 P~~~lID~~G~I~~~~~-g~~~~~~l~-~i~~ 240 (244)
|...++|.+|+++.+.. ...+.++++ .|.+
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 89999999999877642 233555555 4443
No 297
>PRK06756 flavodoxin; Provisional
Probab=30.98 E-value=1.3e+02 Score=22.27 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=4.8
Q ss_pred CcCCCEEEE
Q 026028 105 KFKGKVLLI 113 (244)
Q Consensus 105 ~~~gk~vll 113 (244)
+++||++.+
T Consensus 80 ~l~~k~~~~ 88 (148)
T PRK06756 80 DLTGKKAAV 88 (148)
T ss_pred CCCCCEEEE
Confidence 345666554
No 298
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=30.71 E-value=4.9e+02 Score=24.92 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=35.6
Q ss_pred cCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhh-cCCeEEEEEecC
Q 026028 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCN 150 (244)
Q Consensus 106 ~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~-~~~~~vi~Vs~D 150 (244)
..+..++|.|.|+.--.=++.+|.|-+|+.+-. .+++.|||+.-.
T Consensus 114 ~~~~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs 159 (604)
T PLN02333 114 DESTVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARS 159 (604)
T ss_pred CCCceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 455688888999988888899999999986522 246999999865
No 299
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.60 E-value=1.8e+02 Score=19.95 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.0
Q ss_pred eEEEECCCCcEEEEc
Q 026028 212 EKFLVDKNGKVIERY 226 (244)
Q Consensus 212 ~~~lID~~G~I~~~~ 226 (244)
..++.|++|.++..+
T Consensus 110 ~~~~~DP~G~~iEl~ 124 (125)
T cd08352 110 FTFFYDPDGLPLELY 124 (125)
T ss_pred EEEEECCCCCEEEec
Confidence 468999999987654
No 300
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=30.50 E-value=1.4e+02 Score=22.50 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=13.7
Q ss_pred eeEEEECCCCcEEEEc
Q 026028 211 FEKFLVDKNGKVIERY 226 (244)
Q Consensus 211 P~~~lID~~G~I~~~~ 226 (244)
|...++|.+|++....
T Consensus 118 P~l~llDadgk~kE~l 133 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESL 133 (154)
T ss_pred CeeEeecCCCCcccee
Confidence 8899999999987653
No 301
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.47 E-value=1.8e+02 Score=19.98 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=15.4
Q ss_pred eEEEECCCCcEEEEcCCC
Q 026028 212 EKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 212 ~~~lID~~G~I~~~~~g~ 229 (244)
..++.||+|..+..+.|.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 478999999999988774
No 302
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=30.32 E-value=92 Score=22.02 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=28.0
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 116 ~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
....|..|+..+.-|. +.|+++-.+.+- ..+-+.+++.+++ +..+..+.-+
T Consensus 2 ~~~~C~t~rka~~~L~-------~~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~~~l 52 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLE-------ENGIEYEFIDYK----KEPLSREELRELL-SKLGNGPDDL 52 (110)
T ss_dssp E-TT-HHHHHHHHHHH-------HTT--EEEEETT----TS---HHHHHHHH-HHHTSSGGGG
T ss_pred cCCCCHHHHHHHHHHH-------HcCCCeEeehhh----hCCCCHHHHHHHH-HHhcccHHHH
Confidence 4567888886665554 355666666653 2245788999998 6767554433
No 303
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=29.80 E-value=1.7e+02 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC-ccee
Q 026028 133 LYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF 178 (244)
Q Consensus 133 l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~-~p~l 178 (244)
++.++++.|+.||..|.- +..++..+. +..+++ .|++
T Consensus 31 v~~el~d~G~~Vi~~SSK--------T~aE~~~l~-~~l~v~~~p~i 68 (274)
T COG3769 31 VLLELKDAGVPVILCSSK--------TRAEMLYLQ-KSLGVQGLPLI 68 (274)
T ss_pred HHHHHHHcCCeEEEeccc--------hHHHHHHHH-HhcCCCCCcee
Confidence 345567889999999864 777777776 777877 6666
No 304
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=29.78 E-value=1.8e+02 Score=24.54 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCCchhhHHHhhhccCCCcCCcc
Q 026028 128 SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLV 207 (244)
Q Consensus 128 ~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~~~~~~~~~~~~~i 207 (244)
.-++.+..+|.++|..+|-|+-++. .+-..+-+.+ +...-.|.++.| |..-+.-...|+.++....| +|
T Consensus 100 SLVKA~~~e~~~~glrLVEV~k~dl-----~~Lp~l~~~L-r~~~~kFIlFcD-DLSFe~gd~~yK~LKs~LeG----~v 168 (287)
T COG2607 100 SLVKALLNEYADEGLRLVEVDKEDL-----ATLPDLVELL-RARPEKFILFCD-DLSFEEGDDAYKALKSALEG----GV 168 (287)
T ss_pred HHHHHHHHHHHhcCCeEEEEcHHHH-----hhHHHHHHHH-hcCCceEEEEec-CCCCCCCchHHHHHHHHhcC----Cc
Confidence 3456677788888899999964411 1222233333 334555666643 22223334567777654332 24
Q ss_pred ccceeEEEECCC
Q 026028 208 KWNFEKFLVDKN 219 (244)
Q Consensus 208 ~~~P~~~lID~~ 219 (244)
...|..+|+-..
T Consensus 169 e~rP~NVl~YAT 180 (287)
T COG2607 169 EGRPANVLFYAT 180 (287)
T ss_pred ccCCCeEEEEEe
Confidence 444777666543
No 305
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=29.71 E-value=48 Score=21.43 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=21.7
Q ss_pred cccccCCcccceEEEcCCCCeeecCC
Q 026028 80 ATAATEKSLYDFTVKDIDGKDVPLSK 105 (244)
Q Consensus 80 ~~~~~g~~~pdf~l~~~~g~~v~L~~ 105 (244)
..-..|+++.+++++|..|+.++++.
T Consensus 28 ~sgNvgQP~ENWElkDe~G~vlD~~k 53 (76)
T PF10790_consen 28 QSGNVGQPPENWELKDESGQVLDVNK 53 (76)
T ss_pred hccccCCCcccceeeccCCcEeeccc
Confidence 34457999999999999999888764
No 306
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=29.13 E-value=1.5e+02 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=18.2
Q ss_pred eeEEEECCCCcEEEEcCCCCCh
Q 026028 211 FEKFLVDKNGKVIERYPPTTSP 232 (244)
Q Consensus 211 P~~~lID~~G~I~~~~~g~~~~ 232 (244)
...++.|++|.++....|...+
T Consensus 102 ~~~~~~DPdGn~iEl~~~~~~~ 123 (139)
T PRK04101 102 KSIYFTDPDGHKFEFHTGTLQD 123 (139)
T ss_pred eEEEEECCCCCEEEEEeCCHHH
Confidence 5689999999999998887644
No 307
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=28.98 E-value=2.4e+02 Score=25.61 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCCC-----CCCCChHHHHHHHHHhcCCCcceeee
Q 026028 141 GFEILAFPCNQFGG-----QEPGSNPEIKEFACTRFKAEFPIFDK 180 (244)
Q Consensus 141 ~~~vi~Vs~D~~~~-----~~~~~~~~~~~~~~~~~~~~~p~l~d 180 (244)
|++++.++.+..+. ..+...+.+.+.+ .+.+.++-+..|
T Consensus 199 G~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v-~~~~adlGia~D 242 (446)
T PRK14324 199 GADVIVINDEPNGFNINENCGALHPENLAQEV-KRYRADIGFAFD 242 (446)
T ss_pred CCeEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HhCCCCEEEEEC
Confidence 56777776542211 1123556677766 566666666633
No 308
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=28.67 E-value=2.7e+02 Score=21.40 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=23.2
Q ss_pred CCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026028 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 119 ~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
.|+.|. +..+.++.++| |++|.-|+ ....+++++ +++...
T Consensus 69 ~Cg~C~--Ig~l~~lae~~---g~~v~i~~----------Ggt~ar~~i-k~~~p~ 108 (158)
T PF01976_consen 69 RCGKCD--IGDLKKLAEKY---GYKVYIAT----------GGTLARKII-KEYRPK 108 (158)
T ss_pred CCCCCc--hhHHHHHHHHc---CCEEEEEc----------ChHHHHHHH-HHhCCC
Confidence 344454 56666666665 67877774 335566666 554544
No 309
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=28.55 E-value=2.3e+02 Score=20.41 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.4
Q ss_pred eeEEEECCCCcEEEE
Q 026028 211 FEKFLVDKNGKVIER 225 (244)
Q Consensus 211 P~~~lID~~G~I~~~ 225 (244)
...|+-||+|.++..
T Consensus 124 r~~~~~DPdG~~iEl 138 (142)
T cd08353 124 RLCYIRGPEGILIEL 138 (142)
T ss_pred EEEEEECCCCCEEEe
Confidence 557899999998765
No 310
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.24 E-value=1.9e+02 Score=23.45 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026028 127 YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 127 ~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
.|.+.+|...++.+|.+|+-|| +.-..+.+++..+.++++
T Consensus 90 T~Gi~eLv~~L~~~~~~v~liS---------GGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYLIS---------GGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEEEc---------CChHHHHHHHHHHhCCcH
Confidence 3567778888888999999997 245667778777777766
No 311
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=27.96 E-value=2.5e+02 Score=21.88 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=40.3
Q ss_pred cccceEEEcCCCCeeec--CCcCC-CEEEEEEecCCCCCCH-HhHHHHHHHHHHhhcCCe--EEEEEecCCCCCCCCCCh
Q 026028 87 SLYDFTVKDIDGKDVPL--SKFKG-KVLLIVNVASRCGLTP-SNYSELSHLYEKYKTQGF--EILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 87 ~~pdf~l~~~~g~~v~L--~~~~g-k~vll~F~~~~C~~C~-~~~~~l~~l~~~~~~~~~--~vi~Vs~D~~~~~~~~~~ 160 (244)
-.|++.++++..=++.. -.-.| |.+|+++=.+-+++=. ..-+++.+..+++++.+. .|+-||=. .|.....+.
T Consensus 17 ~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNs-aGs~~d~~~ 95 (168)
T PF09419_consen 17 LLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNS-AGSSDDPDG 95 (168)
T ss_pred cCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECC-CCcccCccH
Confidence 46777776665433332 11244 6888888766655332 223444444444444322 34444421 122221134
Q ss_pred HHHHHHHHHhcCCC
Q 026028 161 PEIKEFACTRFKAE 174 (244)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (244)
++.+.+. +..+++
T Consensus 96 ~~a~~~~-~~lgIp 108 (168)
T PF09419_consen 96 ERAEALE-KALGIP 108 (168)
T ss_pred HHHHHHH-HhhCCc
Confidence 4454544 555543
No 312
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=27.85 E-value=3.4e+02 Score=24.55 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=19.1
Q ss_pred CeEEEEEecCCCCCC-----CCCChHHHHHHHHHhcCCCccee
Q 026028 141 GFEILAFPCNQFGGQ-----EPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 141 ~~~vi~Vs~D~~~~~-----~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
|++++.++.+..+.. .+...+++.+.+ ++.+.++-+.
T Consensus 195 G~~v~~~n~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia 236 (443)
T PRK10887 195 GAEVIAIGCEPNGLNINDECGATDPEALQAAV-LAEKADLGIA 236 (443)
T ss_pred CCeEEEEeccCCCCCCCCCCCCCCHHHHHHHH-HhcCCCeeeE
Confidence 566776665422111 123455666666 4556665555
No 313
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=27.71 E-value=63 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=11.8
Q ss_pred cCCCCCCHHhHHHHHHHHHHh
Q 026028 117 ASRCGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 117 ~~~C~~C~~~~~~l~~l~~~~ 137 (244)
.+|||.|- ....++.+.+.+
T Consensus 18 ~~~CpGCg-~~~i~~~i~~al 37 (301)
T PRK05778 18 TTWCPGCG-NFGILNAIIQAL 37 (301)
T ss_pred CCCCCCCC-ChHHHHHHHHHH
Confidence 46999997 334444444444
No 314
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.12 E-value=4.2e+02 Score=24.25 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
..+|.+|.+.+-.-..=.+....|...+++ +|..++-|++|-+ -+.-.++++..+ ++.+++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~---RpAA~eQL~~La-~q~~v~ 157 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTY---RPAAIEQLKQLA-EQVGVP 157 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccC---ChHHHHHHHHHH-HHcCCc
Confidence 456788877755443334444555555554 5567888888842 122234444444 454443
No 315
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=26.57 E-value=68 Score=24.77 Aligned_cols=28 Identities=21% Similarity=0.046 Sum_probs=18.5
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHH-HH
Q 026028 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DI 238 (244)
Q Consensus 206 ~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i 238 (244)
+|.++|+++| +|+ +.+.|....++++ .|
T Consensus 164 gv~GvP~~vv---~g~--~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 164 GVFGVPTFVV---NGK--YRFFGADRLDELEDAL 192 (193)
T ss_dssp TCSSSSEEEE---TTT--EEEESCSSHHHHHHHH
T ss_pred CCcccCEEEE---CCE--EEEECCCCHHHHHHHh
Confidence 3666798777 666 5666776666665 44
No 316
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=26.39 E-value=2.5e+02 Score=21.90 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=32.4
Q ss_pred cCCCCCCHHhH-HHHHHHHHHhhcC-CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026028 117 ASRCGLTPSNY-SELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 117 ~~~C~~C~~~~-~~l~~l~~~~~~~-~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
-+|-+...+.+ +.=-.+....+.+ ++-|||+--+ .+.+.-...+.+|+ ++++++..++
T Consensus 87 lSW~v~~fedIt~dSLslF~tlePkidlLIvG~Gd~---~~p~~v~~~V~~F~-k~~ki~lEi~ 146 (196)
T KOG3363|consen 87 LSWSVRTFEDITTDSLSLFQTLEPKIDLLIVGCGDK---KHPDKVRPSVRQFV-KSHKIKLEIV 146 (196)
T ss_pred eeccCCChhhcCcchHhHhhhcCCCccEEEEecCCc---CCchhcCHHHHHHH-HHhCcceEEe
Confidence 56887665443 1112233333333 3556666422 12222456788999 8899988887
No 317
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=26.26 E-value=57 Score=27.81 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=13.3
Q ss_pred cCCCCCCHHhHHHHHHHHHHh
Q 026028 117 ASRCGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 117 ~~~C~~C~~~~~~l~~l~~~~ 137 (244)
-+|||.|-... .++.+.+.+
T Consensus 17 ~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 17 PRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCcCCCCCCHH-HHHHHHHHH
Confidence 35999998544 555555555
No 318
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=25.74 E-value=5.4e+02 Score=23.82 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=25.7
Q ss_pred cccCCcccceEEEcCCCCeeecCCcCC-CEEEEEE
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVN 115 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~~~g-k~vll~F 115 (244)
...|..+|+..+.+.+|....++++.| ..+||.|
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence 357999999998877665555676766 5888877
No 319
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=25.60 E-value=73 Score=27.21 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=10.9
Q ss_pred CCCCCCHHhHHHHHHHHHHh
Q 026028 118 SRCGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 118 ~~C~~C~~~~~~l~~l~~~~ 137 (244)
+|||.|-. ...|+.+++.+
T Consensus 2 ~~CpGCg~-~~i~~~~~~a~ 20 (287)
T TIGR02177 2 DWCPGCGD-FGILSALQRAL 20 (287)
T ss_pred CcCCCCCC-hHHHHHHHHHH
Confidence 69999983 33344444333
No 320
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=25.30 E-value=1.6e+02 Score=17.54 Aligned_cols=31 Identities=6% Similarity=-0.048 Sum_probs=19.1
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEec
Q 026028 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~ 149 (244)
.|+..+||.|....-.|+.. +..++++.+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~ 33 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDL 33 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 35567899999666665443 33356666653
No 321
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=24.72 E-value=1.2e+02 Score=27.59 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=24.4
Q ss_pred hcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026028 138 KTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 138 ~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
++++|.+| |++|.-.++.-.+.....+|+ ++.+++||-++
T Consensus 303 P~R~VDlI-isfD~Sa~~pf~~l~~~~~~c-~~~~ipfp~i~ 342 (430)
T cd07202 303 PVRNTDLI-LSFDFSEGDPFETIKDTAEYC-RKHNIPFPQVD 342 (430)
T ss_pred CCCcccEE-EEeecCCCchhHHHHHHHHHH-HHcCCCCCCcC
Confidence 35667665 445533333233444556777 78899999985
No 322
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=24.30 E-value=38 Score=22.03 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=11.6
Q ss_pred eEEEECCCCcEEEE
Q 026028 212 EKFLVDKNGKVIER 225 (244)
Q Consensus 212 ~~~lID~~G~I~~~ 225 (244)
-.|.||++|++...
T Consensus 20 v~~~I~~~G~v~~~ 33 (79)
T PF03544_consen 20 VEFTIDPDGRVSDV 33 (79)
T ss_dssp EEEEEETTTEEEEE
T ss_pred EEEEEeCCCCEEEE
Confidence 46899999998864
No 323
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=24.06 E-value=1.4e+02 Score=18.68 Aligned_cols=18 Identities=6% Similarity=-0.162 Sum_probs=12.8
Q ss_pred EEecCCCCCCHHhHHHHH
Q 026028 114 VNVASRCGLTPSNYSELS 131 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~ 131 (244)
.|...+|+.|....-.|.
T Consensus 3 ly~~~~~~~~~~v~~~l~ 20 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLA 20 (73)
T ss_pred EEECCCChhHHHHHHHHH
Confidence 355778999997666553
No 324
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=23.74 E-value=11 Score=22.49 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCCCCHHhHHHHHHHHHHhhc
Q 026028 119 RCGLTPSNYSELSHLYEKYKT 139 (244)
Q Consensus 119 ~C~~C~~~~~~l~~l~~~~~~ 139 (244)
+|.+|+.-.+.|.++.+++.+
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCcHhHHHHHHHHHHHHHc
Confidence 677999888999988888754
No 325
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=23.62 E-value=88 Score=21.13 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=12.0
Q ss_pred eEEEECCCCcEEEEcCCCC
Q 026028 212 EKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 212 ~~~lID~~G~I~~~~~g~~ 230 (244)
.+.|.|++|+.+++|....
T Consensus 27 D~~v~d~~g~~vwrwS~~~ 45 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSDGK 45 (82)
T ss_dssp EEEEE-TT--EEEETTTT-
T ss_pred EEEEECCCCCEEEEecCCc
Confidence 3678899999999986543
No 326
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=23.34 E-value=43 Score=22.00 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=12.1
Q ss_pred eEEEECCCCcEEEEc
Q 026028 212 EKFLVDKNGKVIERY 226 (244)
Q Consensus 212 ~~~lID~~G~I~~~~ 226 (244)
..||+|++|+++.+-
T Consensus 55 ~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 55 YAFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEEETTSBBCE-S
T ss_pred EEEEEECCCCEEEeC
Confidence 479999999998773
No 327
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=23.17 E-value=4.6e+02 Score=23.72 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHhcCCCccee
Q 026028 159 SNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l 178 (244)
..+++.+.+ ++.+.++-+.
T Consensus 223 ~l~~l~~~v-~~~~adlGia 241 (448)
T PRK14315 223 HPEALAKKV-REVRADIGIA 241 (448)
T ss_pred CHHHHHHHH-HHcCCCEEEE
Confidence 455566666 4556655555
No 328
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=23.14 E-value=1.7e+02 Score=21.77 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=27.5
Q ss_pred HHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026028 132 HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 132 ~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
++.++++++ ++|++++.. .+.+.+.+.+ ++|+..+-.+.
T Consensus 16 dVi~~~~d~-f~v~~Lsa~-------~n~~~L~~q~-~~f~p~~v~i~ 54 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAG-------SNIEKLAEQA-REFKPKYVVIA 54 (129)
T ss_dssp HHHHHCTTT-EEEEEEEES-------STHHHHHHHH-HHHT-SEEEES
T ss_pred HHHHhCCCc-eEEEEEEcC-------CCHHHHHHHH-HHhCCCEEEEc
Confidence 455666665 899999876 3677777777 78888887773
No 329
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=23.11 E-value=1.8e+02 Score=17.43 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=20.8
Q ss_pred eeEEEECCCCcEEEEcCCCCChhhHH-HHHHH
Q 026028 211 FEKFLVDKNGKVIERYPPTTSPFQIE-DIQKL 241 (244)
Q Consensus 211 P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~l 241 (244)
....|.+.||+|+..-.+..+...-+ .|+.+
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I~~V 37 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGIESV 37 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 45678999999999777766666665 55543
No 330
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.02 E-value=3.2e+02 Score=20.29 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=16.9
Q ss_pred CCCCCCHHhHHHHHHHHHHhhc
Q 026028 118 SRCGLTPSNYSELSHLYEKYKT 139 (244)
Q Consensus 118 ~~C~~C~~~~~~l~~l~~~~~~ 139 (244)
.-| .|..++..|+++.+.+..
T Consensus 57 ~p~-~~~~~v~~L~~l~~~~~~ 77 (130)
T PF11303_consen 57 DPC-LPPDQVAKLKALAKSCLP 77 (130)
T ss_pred CCC-CCHHHHHHHHHHHhccCC
Confidence 444 999999999999988544
No 331
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=22.95 E-value=3.1e+02 Score=23.19 Aligned_cols=18 Identities=11% Similarity=0.390 Sum_probs=11.7
Q ss_pred HHHHHhhcCCeEEEEEec
Q 026028 132 HLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 132 ~l~~~~~~~~~~vi~Vs~ 149 (244)
++.+++..+|..+|-|.-
T Consensus 21 ~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 21 ELAKQLARRGYNLILVAR 38 (265)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 445566667777777764
No 332
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=22.87 E-value=1e+02 Score=19.53 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.0
Q ss_pred eeEEEECCCCcEEEE
Q 026028 211 FEKFLVDKNGKVIER 225 (244)
Q Consensus 211 P~~~lID~~G~I~~~ 225 (244)
--.|.||++|+|...
T Consensus 13 ~v~~~i~~~G~v~~~ 27 (74)
T TIGR01352 13 VVRFTVDADGRVTSV 27 (74)
T ss_pred EEEEEECCCCCEEEE
Confidence 346899999999764
No 333
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=22.75 E-value=2.9e+02 Score=23.98 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=47.5
Q ss_pred eecCCcCCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeee
Q 026028 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (244)
Q Consensus 101 v~L~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d 180 (244)
.++.+..|+|.+| .+..-+.-+... .|+..+|+.|+-|+-+ .+.-+..++-+.++++..-.++.
T Consensus 42 ~~~~~~~g~WAVV--TGaTDGIGKayA-------~eLAkrG~nvvLIsRt------~~KL~~v~kEI~~~~~vev~~i~- 105 (312)
T KOG1014|consen 42 KDLKEKLGSWAVV--TGATDGIGKAYA-------RELAKRGFNVVLISRT------QEKLEAVAKEIEEKYKVEVRIIA- 105 (312)
T ss_pred cchHHhcCCEEEE--ECCCCcchHHHH-------HHHHHcCCEEEEEeCC------HHHHHHHHHHHHHHhCcEEEEEE-
Confidence 3455545677766 233334444333 4456678899999864 12233333334366664433332
Q ss_pred cCCCCCCchhhHHHhhhccCCCcCCccccceeEEEECCCCc
Q 026028 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK 221 (244)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lID~~G~ 221 (244)
.|....+. .|..+..... ..+--+||+-=|.
T Consensus 106 ~Dft~~~~--~ye~i~~~l~--------~~~VgILVNNvG~ 136 (312)
T KOG1014|consen 106 IDFTKGDE--VYEKLLEKLA--------GLDVGILVNNVGM 136 (312)
T ss_pred EecCCCch--hHHHHHHHhc--------CCceEEEEecccc
Confidence 44443322 5655544322 2255677765554
No 334
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=22.56 E-value=47 Score=18.28 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.2
Q ss_pred EEEcCCCCeeecCC
Q 026028 92 TVKDIDGKDVPLSK 105 (244)
Q Consensus 92 ~l~~~~g~~v~L~~ 105 (244)
++.|.+|++++|.+
T Consensus 14 ~l~Dv~G~~Inl~~ 27 (32)
T PF10813_consen 14 PLKDVKGNPINLYK 27 (32)
T ss_pred cccccCCCEEechh
Confidence 36788888887754
No 335
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=22.54 E-value=2.7e+02 Score=25.55 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=33.8
Q ss_pred CCCEEEEEEecCCCCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026028 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 107 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
-|||-+|.. .+.-|.......--.+|.++| ++.|+.+++++. ..+++...+ ++--..||+
T Consensus 179 igKPFvill-Ns~~P~s~et~~L~~eL~ekY---~vpVlpvnc~~l------~~~DI~~Il-~~vLyEFPV 238 (492)
T PF09547_consen 179 IGKPFVILL-NSTKPYSEETQELAEELEEKY---DVPVLPVNCEQL------REEDITRIL-EEVLYEFPV 238 (492)
T ss_pred hCCCEEEEE-eCCCCCCHHHHHHHHHHHHHh---CCcEEEeehHHc------CHHHHHHHH-HHHHhcCCc
Confidence 478655533 233344443333333444444 589999999865 667777766 443445554
No 336
>PRK11478 putative lyase; Provisional
Probab=22.40 E-value=2.8e+02 Score=19.36 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=12.7
Q ss_pred eeEEEECCCCcEEEEc
Q 026028 211 FEKFLVDKNGKVIERY 226 (244)
Q Consensus 211 P~~~lID~~G~I~~~~ 226 (244)
...|+-|++|.++..+
T Consensus 112 ~~~~~~DPdG~~iEl~ 127 (129)
T PRK11478 112 RFTFFNDPDGLPLELY 127 (129)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4578999999987654
No 337
>PRK09267 flavodoxin FldA; Validated
Probab=22.14 E-value=2.3e+02 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.6
Q ss_pred hhhHH-HHHHH
Q 026028 232 PFQIE-DIQKL 241 (244)
Q Consensus 232 ~~~l~-~i~~l 241 (244)
++.++ +++++
T Consensus 153 d~~i~~w~~~i 163 (169)
T PRK09267 153 DERIEAWVKQI 163 (169)
T ss_pred HHHHHHHHHHH
Confidence 34455 44444
No 338
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=22.14 E-value=1.6e+02 Score=25.80 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCHHhHHHHHHHHHHhhcC--------CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeecCCCCCCchhh
Q 026028 120 CGLTPSNYSELSHLYEKYKTQ--------GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPV 191 (244)
Q Consensus 120 C~~C~~~~~~l~~l~~~~~~~--------~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~ 191 (244)
||.|-...-.+-+..++..++ ++.|++--+| .+-+.+. .++++..+--
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVN--------GPGEak~---AdiGia~~~~------------- 319 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVN--------GPGEAKH---ADIGIAGGGK------------- 319 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEec--------CCcchhc---cceeeecCCC-------------
Q ss_pred HHHhhhccCCCcCCccccceeEEEECCCCcEEEEcCCCCChhhHH-HHHHHHhC
Q 026028 192 YQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE-DIQKLVVA 244 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~P~~~lID~~G~I~~~~~g~~~~~~l~-~i~~lL~~ 244 (244)
|.-.++ .+|+++.+..+..-.++++ .|++..++
T Consensus 320 -------------------~~~~~f-~~g~~~~~~~~~~~~eel~~~i~~~~~~ 353 (361)
T COG0821 320 -------------------GSGPVF-VKGEIIKKLPEEDIVEELEALIEAYAEE 353 (361)
T ss_pred -------------------CeeEEE-ECCeEEEecChhhHHHHHHHHHHHHHHH
No 339
>PF14903 WG_beta_rep: WG containing repeat
Probab=22.01 E-value=60 Score=17.28 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=8.8
Q ss_pred EECCCCcEEEE
Q 026028 215 LVDKNGKVIER 225 (244)
Q Consensus 215 lID~~G~I~~~ 225 (244)
+||.+|+++-.
T Consensus 3 ~id~~G~~vi~ 13 (35)
T PF14903_consen 3 YIDKNGKIVIP 13 (35)
T ss_pred EEeCCCCEEEE
Confidence 68999998753
No 340
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.66 E-value=2.8e+02 Score=19.15 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.1
Q ss_pred eeEEEECCCCcEEEEcCC
Q 026028 211 FEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 211 P~~~lID~~G~I~~~~~g 228 (244)
...|+.||+|..+..+..
T Consensus 102 ~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 102 EALYLSDPEGNGIEIYAD 119 (125)
T ss_pred eEEEEECCCCCEEEEEEe
Confidence 357899999999876543
No 341
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.53 E-value=2.4e+02 Score=18.17 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=13.2
Q ss_pred EEecCCCCCCHHhHHHHHH
Q 026028 114 VNVASRCGLTPSNYSELSH 132 (244)
Q Consensus 114 ~F~~~~C~~C~~~~~~l~~ 132 (244)
.+...+||.|....-.|.+
T Consensus 4 Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred EecCCCCchHHHHHHHHHH
Confidence 3556799999966655544
No 342
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=21.51 E-value=4.7e+02 Score=21.63 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=32.9
Q ss_pred EEEEEEe-cCCCCC-CHHhHHHHHHHHHHhhcC---CeEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcc
Q 026028 110 VLLIVNV-ASRCGL-TPSNYSELSHLYEKYKTQ---GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP 176 (244)
Q Consensus 110 ~vll~F~-~~~C~~-C~~~~~~l~~l~~~~~~~---~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p 176 (244)
+|-|.++ ...-+. -......+.++.++|+.. ++.+-.|..+ ..++..++.+ +++|+.--
T Consensus 26 pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~-------~~~~~~~~~~-~~~Gi~~~ 89 (271)
T PF09822_consen 26 PVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPD-------ENPSEAEEKA-KEYGIQPV 89 (271)
T ss_pred CEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCC-------CChHHHHHHH-HhcCCCcc
Confidence 5555444 443343 344556666666666543 3777777543 2455666656 67787643
No 343
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=21.51 E-value=6.6e+02 Score=23.29 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=26.4
Q ss_pred cccCCcccceEEEcCCCCeeecCCcCC-CEEEEEEec
Q 026028 82 AATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVA 117 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~g~~v~L~~~~g-k~vll~F~~ 117 (244)
...|..+|+..+. .+|+.++|.|+-| +.+||.|-.
T Consensus 427 ~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~ 462 (547)
T PRK08132 427 PVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGD 462 (547)
T ss_pred CCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecC
Confidence 4579999999887 4677778888655 588887753
No 344
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.37 E-value=3.8e+02 Score=23.28 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=7.6
Q ss_pred EEEECCCCcEE
Q 026028 213 KFLVDKNGKVI 223 (244)
Q Consensus 213 ~~lID~~G~I~ 223 (244)
..++|++|+++
T Consensus 188 l~~vd~~G~~l 198 (355)
T cd03084 188 LIVVDENGGFL 198 (355)
T ss_pred eEEECCCCcee
Confidence 56777777764
No 345
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.68 E-value=4.8e+02 Score=21.41 Aligned_cols=35 Identities=6% Similarity=0.080 Sum_probs=21.8
Q ss_pred CCCCHHhHHHHHHHHHHhhcCCeEEEEEecCCCCC
Q 026028 120 CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG 154 (244)
Q Consensus 120 C~~C~~~~~~l~~l~~~~~~~~~~vi~Vs~D~~~~ 154 (244)
+|.......++..-.+.....|+.+|-+-+|.+..
T Consensus 25 vpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~ 59 (229)
T PRK01261 25 ESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHD 59 (229)
T ss_pred EEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCC
Confidence 34444455555544455555678898988887644
No 346
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=20.64 E-value=2.9e+02 Score=18.79 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=12.7
Q ss_pred eeEEEECCCCcEEEEc
Q 026028 211 FEKFLVDKNGKVIERY 226 (244)
Q Consensus 211 P~~~lID~~G~I~~~~ 226 (244)
...++.|++|..+...
T Consensus 94 ~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 94 RRFFVRDPFGKLVNIL 109 (112)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4578999999987654
No 347
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=20.50 E-value=4.2e+02 Score=23.91 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=17.7
Q ss_pred CeEEEEEecCCCCC-----CCCCChHHHHHHHHHhcCCCccee
Q 026028 141 GFEILAFPCNQFGG-----QEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 141 ~~~vi~Vs~D~~~~-----~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
|++++.++.+..+. ..+...+++.+.+ ++.+..+-+.
T Consensus 197 g~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v-~~~~adlGia 238 (448)
T PRK14316 197 GADVTVIGTSPDGLNINDGVGSTHPEALQELV-VEKGADLGLA 238 (448)
T ss_pred CCeEEEEccCCCCCCCCCCCCCCCHHHHHHHH-hhcCCCEEEE
Confidence 45666665432111 1123455666666 4445555555
No 348
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=20.43 E-value=3.5e+02 Score=19.94 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=25.1
Q ss_pred HHHHHhhcCCeEEEEEecCCCCCC-------CCCChHHHHHHHHHhcCCCccee
Q 026028 132 HLYEKYKTQGFEILAFPCNQFGGQ-------EPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 132 ~l~~~~~~~~~~vi~Vs~D~~~~~-------~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
+..++++++|..|+.++--..... ...+.....+|+ ++++++|.-+
T Consensus 31 e~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL-~k~~ipYd~l 83 (126)
T TIGR01689 31 EKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL-NQHNVPYDEI 83 (126)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-HHcCCCCceE
Confidence 334444557788888874210000 001113667888 7888887554
No 349
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=20.41 E-value=3.8e+02 Score=20.06 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026028 128 SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 128 ~~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
+.+.++.+.+++.|+.++-+|.. ....++.++ +++++
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~--------~~~~i~~~~-~~~g~ 112 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGG--------FDFFVEPVA-EKLGI 112 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCC--------cHHHHHHHH-HHcCC
Confidence 55666666667777777777642 334455554 55554
No 350
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.25 E-value=3.5e+02 Score=19.62 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCCeEEEEEecCCCCCCCCCChHHHHHHH
Q 026028 129 ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 129 ~l~~l~~~~~~~~~~vi~Vs~D~~~~~~~~~~~~~~~~~ 167 (244)
...+..+++++.++.++.|.+. ..+.+.+.+++
T Consensus 120 ~~~~~~~~~~~~~v~v~~i~~g------~~~~~~l~~la 152 (161)
T cd01450 120 DPKEAAAKLKDEGIKVFVVGVG------PADEEELREIA 152 (161)
T ss_pred chHHHHHHHHHCCCEEEEEecc------ccCHHHHHHHh
Confidence 4556666667778888888764 12455565555
Done!