BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026029
MPLTTANFSICPSIFLRRIRVRSPSPKFPPRFSQFSISRPNLTSPSAAMLLPQNPVLSDV
CASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILA
SLTPGVNIIRMLLVGSGMWKDEATVKSMSRYGDRRELLTGPLYYAITITLACVIYWRNSP
NGIAAICNLCAGDGKETESLCMPVLSSLFTGLSAVQYLNLFSCKLDIKNCICTFTDIFAI
NYCS

High Scoring Gene Products

Symbol, full name Information P value
FOLK
AT5G58560
protein from Arabidopsis thaliana 1.2e-47
VTE5
AT5G04490
protein from Arabidopsis thaliana 5.5e-22
DDB_G0272380 gene from Dictyostelium discoideum 1.8e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026029
        (244 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2178768 - symbol:FOLK "AT5G58560" species:3702...   498  1.2e-47   1
TAIR|locus:2184447 - symbol:VTE5 "AT5G04490" species:3702...   256  5.5e-22   1
DICTYBASE|DDB_G0272380 - symbol:DDB_G0272380 species:4468...   185  1.8e-14   1


>TAIR|locus:2178768 [details] [associations]
            symbol:FOLK "AT5G58560" species:3702 "Arabidopsis
            thaliana" [GO:0004605 "phosphatidate cytidylyltransferase activity"
            evidence=ISS] [GO:0008654 "phospholipid biosynthetic process"
            evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM] [GO:0016020
            "membrane" evidence=IEA;ISS] [GO:0016772 "transferase activity,
            transferring phosphorus-containing groups" evidence=IEA]
            [GO:0006720 "isoprenoid metabolic process" evidence=IDA]
            [GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
            [GO:0016487 "farnesol metabolic process" evidence=IMP] [GO:0048440
            "carpel development" evidence=IMP] [GO:0052668 "farnesol kinase
            activity" evidence=IDA] [GO:0052669 "CTP:2-trans,-6-trans-farnesol
            kinase activity" evidence=IDA] [GO:0052670 "geraniol kinase
            activity" evidence=IDA] [GO:0052671 "geranylgeraniol kinase
            activity" evidence=IDA] [GO:0010228 "vegetative to reproductive
            phase transition of meristem" evidence=RCA] [GO:0016926 "protein
            desumoylation" evidence=RCA] [GO:0050665 "hydrogen peroxide
            biosynthetic process" evidence=RCA] InterPro:IPR000374 Pfam:PF01148
            UniPathway:UPA00160 GO:GO:0016021 GO:GO:0009737 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0031969 GO:GO:0016301 GO:GO:0048440
            EMBL:AB020755 GO:GO:0010189 eggNOG:COG0170 HOGENOM:HOG000265019
            EMBL:AY087555 EMBL:AK176090 EMBL:AK176217 IPI:IPI00521780
            RefSeq:NP_200664.1 UniGene:At.22324 UniGene:At.68536 PRIDE:Q67ZM7
            EnsemblPlants:AT5G58560.1 GeneID:835969 KEGG:ath:AT5G58560
            TAIR:At5g58560 InParanoid:Q67ZM7 KO:K15892 OMA:RINNGCT
            PhylomeDB:Q67ZM7 BioCyc:ARA:AT5G58560-MONOMER
            BioCyc:MetaCyc:AT5G58560-MONOMER Genevestigator:Q67ZM7
            GermOnline:AT5G58560 GO:GO:0052669 GO:GO:0052670 GO:GO:0052671
            GO:GO:0016487 Uniprot:Q67ZM7
        Length = 307

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 92/151 (60%), Positives = 113/151 (74%)

Query:    44 SPSAAMLLPQNPVLSDXXXXXXXXXXXXXXLRLWEETARRDLFDQKLNRKLVHISIGLIF 103
             S  AA++ P+N VLSD              L  W E  +R +FDQKL RKLVHI+IGL+F
Sbjct:    61 SSLAAVMFPENSVLSDVCAFGVTSIVAFSCLGFWGEIGKRGIFDQKLIRKLVHINIGLVF 120

Query:   104 MLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEATVKSMSRYGDRRELLTGPLY 163
             MLCWPLFSSG +GA+ ASL PG+NI+RMLL+G G++ DE T+KSMSR+GDRRELL GPLY
Sbjct:   121 MLCWPLFSSGIQGALFASLVPGLNIVRMLLLGLGVYHDEGTIKSMSRHGDRRELLKGPLY 180

Query:   164 YAITITLACVIYWRNSPNGIAAICNLCAGDG 194
             Y ++IT AC+ YW++SP  IA ICNLCAGDG
Sbjct:   181 YVLSITSACIYYWKSSPIAIAVICNLCAGDG 211


>TAIR|locus:2184447 [details] [associations]
            symbol:VTE5 "AT5G04490" species:3702 "Arabidopsis
            thaliana" [GO:0004605 "phosphatidate cytidylyltransferase activity"
            evidence=ISS] [GO:0008654 "phospholipid biosynthetic process"
            evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0016020 "membrane" evidence=IEA;ISS] [GO:0016772 "transferase
            activity, transferring phosphorus-containing groups" evidence=IEA]
            [GO:0010189 "vitamin E biosynthetic process" evidence=IMP]
            [GO:0010276 "phytol kinase activity" evidence=IDA]
            InterPro:IPR000374 Pfam:PF01148 UniPathway:UPA00160 GO:GO:0016021
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0031969
            GO:GO:0010189 EMBL:AL162875 EMBL:BT004006 EMBL:AY085036
            EMBL:BT021123 IPI:IPI00542478 PIR:T48445 RefSeq:NP_196069.1
            UniGene:At.33117 STRING:Q9LZ76 PaxDb:Q9LZ76 PRIDE:Q9LZ76
            EnsemblPlants:AT5G04490.1 GeneID:830328 KEGG:ath:AT5G04490
            TAIR:At5g04490 eggNOG:NOG287113 HOGENOM:HOG000265019
            InParanoid:Q9LZ76 OMA:KTMTRTG PhylomeDB:Q9LZ76
            ProtClustDB:CLSN2914916 BioCyc:ARA:AT5G04490-MONOMER
            BioCyc:MetaCyc:AT5G04490-MONOMER Genevestigator:Q9LZ76
            GermOnline:AT5G04490 GO:GO:0010276 Uniprot:Q9LZ76
        Length = 304

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 48/141 (34%), Positives = 77/141 (54%)

Query:    54 NPVLSDXXXXXXXXXXXXXXLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSG 113
             N +L D              +  +E   +R++  Q L+RKLVHI  GL+F+L WP+FS  
Sbjct:    65 NSLLHDVGATVAVLGGAYALVLSFESLTKRNVIQQSLSRKLVHILSGLLFVLAWPIFSGS 124

Query:   114 PRGAILASLTPGVNIIRMLLVGSGMWKDEATVKSMSRYGDRRELLTGPLYYAITITLACV 173
                   A+  P VN +R+++ G  +  +   +KS++R G   ELL GPL+Y + +  + V
Sbjct:   125 TEARYFAAFVPLVNGLRLVINGLSISPNSMLIKSVTREGRAEELLKGPLFYVLALLFSAV 184

Query:   174 IYWRNSPNGIAAICNLCAGDG 194
              +WR SP G+ ++  +C GDG
Sbjct:   185 FFWRESPIGMISLAMMCGGDG 205


>DICTYBASE|DDB_G0272380 [details] [associations]
            symbol:DDB_G0272380 species:44689 "Dictyostelium
            discoideum" [GO:0016772 "transferase activity, transferring
            phosphorus-containing groups" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] InterPro:IPR000374 Pfam:PF01148
            dictyBase:DDB_G0272380 GO:GO:0016020 GO:GO:0016772
            EMBL:AAFI02000008 eggNOG:COG0170 RefSeq:XP_645174.1
            EnsemblProtists:DDB0216976 GeneID:8618346 KEGG:ddi:DDB_G0272380
            InParanoid:Q55A10 OMA:NITISIC Uniprot:Q55A10
        Length = 223

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 46/110 (41%), Positives = 61/110 (55%)

Query:    86 FDQKLNRKLVHISIGLIFMLCWPLFSS-GPRGAILASLTPGVNIIRMLLVGSGMWKDEAT 144
             F Q L +  V  S G+I++L W +F        I+  L P +   +  L+G G+  D+ T
Sbjct:    21 FCQFLKKHKVISSTGIIYVLVWRIFPQFNWYSRIVVGLVPLIISFQYALIGLGIINDQKT 80

Query:   145 VKSMSRYGDRRELLTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDG 194
             V+SMSR G  RELL GPL Y I I+L  +I+W  SP  I  I  LC GDG
Sbjct:    81 VESMSRSGSPRELLLGPLSYGIIISLLTMIFWF-SPISIITIGVLCLGDG 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      244       213   0.00084  112 3  11 22  0.43    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.72u 0.08s 16.80t   Elapsed:  00:00:02
  Total cpu time:  16.72u 0.08s 16.80t   Elapsed:  00:00:02
  Start:  Thu May  9 16:14:05 2013   End:  Thu May  9 16:14:07 2013

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