Query 026029
Match_columns 244
No_of_seqs 130 out of 204
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4453 Predicted ER membrane 99.7 9.4E-18 2E-22 150.3 5.7 122 49-201 56-177 (269)
2 COG0170 SEC59 Dolichol kinase 98.9 7.1E-09 1.5E-13 91.8 8.1 113 86-201 15-135 (216)
3 PF01148 CTP_transf_1: Cytidyl 98.3 5.8E-06 1.3E-10 71.6 9.9 125 65-201 26-151 (259)
4 KOG2468 Dolichol kinase [Lipid 96.3 0.015 3.3E-07 57.5 7.9 106 86-201 309-431 (510)
5 PF14126 DUF4293: Domain of un 75.7 5.7 0.00012 33.6 4.9 76 75-150 68-148 (149)
6 KOG1608 Protein transporter of 73.7 11 0.00024 36.3 6.7 93 87-201 190-282 (374)
7 COG3302 DmsC DMSO reductase an 25.1 6E+02 0.013 24.2 9.2 29 140-168 64-95 (281)
8 COG2237 Predicted membrane pro 22.7 2.1E+02 0.0046 28.1 5.8 60 75-140 144-206 (364)
9 PF05393 Hum_adeno_E3A: Human 20.3 1.7E+02 0.0037 23.5 3.9 51 45-95 20-70 (94)
10 PRK13592 ubiA prenyltransferas 20.0 7.7E+02 0.017 23.5 9.4 14 143-156 192-205 (299)
No 1
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=99.71 E-value=9.4e-18 Score=150.32 Aligned_cols=122 Identities=28% Similarity=0.576 Sum_probs=108.8
Q ss_pred cccCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhhhhhhhhHHHHHHhhccCCchHHHHHHHHHHHHHH
Q 026029 49 MLLPQNPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNI 128 (244)
Q Consensus 49 ~~~~~~p~~~D~~a~~lt~~~v~~vL~i~e~L~kr~~l~~elsRKiVHIg~G~V~~l~w~lF~~~~~a~llAal~~~ln~ 128 (244)
-+|. +...+|+.+.++.....+..+.+.+...|++.+++.+.||+|||.+|.++.+.||+|+
T Consensus 56 ~~w~-ns~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kfi~ifigdlirlnWP~Fs----------------- 117 (269)
T KOG4453|consen 56 AVWT-NSLKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKFIHIFIGDLIRLNWPIFS----------------- 117 (269)
T ss_pred hhcc-hhhhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhHHHHhccHHHH-----------------
Confidence 3444 7789999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCccccchhhhhheecCCcccccccchHHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhcc
Q 026029 129 IRMLLVGSGMWKDEATVKSMSRYGDRRELLTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDGKETESLC 201 (244)
Q Consensus 129 l~~~~~Glg~~~~~~lv~smsR~Gd~~elL~GpVyY~Isi~lL~llfW~~~PiaiigIlvLa~GDGLAaLVG~ 201 (244)
++...|+|+..|+ ++|+ +++||+||.+++.+...+||+++|++.+.++.+| ||.|++||+
T Consensus 118 -rLy~r~lg~lmre-----~erh-----l~nGvLfYvLgl~fs~~ff~kespi~s~~Llswc--Dt~AdtvGR 177 (269)
T KOG4453|consen 118 -RLYIRGLGILMRE-----VERH-----LLNGVLFYVLGLLFSAVFFWKESPIGSISLLSWC--DTIADTVGR 177 (269)
T ss_pred -HHHHhcccccchH-----HHHH-----HhcchHHHHHHHHHHhhccccccHHHHHHHHHHh--hhHHHHHhh
Confidence 7777888876655 4443 7899999999999999999999998888888888 999999998
No 2
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=98.87 E-value=7.1e-09 Score=91.78 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=70.2
Q ss_pred cccccchhhhhhhhhHHHHHHhhccCCchHHHHHHHHHHHHHH--HHHHhhcCCc------cccchhhhhheecCCcccc
Q 026029 86 FDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNI--IRMLLVGSGM------WKDEATVKSMSRYGDRREL 157 (244)
Q Consensus 86 l~~elsRKiVHIg~G~V~~l~w~lF~~~~~a~llAal~~~ln~--l~~~~~Glg~------~~~~~lv~smsR~Gd~~el 157 (244)
...|+.||.+|+..+.+.... .+.....-..+..++.++.. +++.-.+... ..-+++...+.|+.++..-
T Consensus 15 ~~~~~~rk~~hi~~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~ 92 (216)
T COG0170 15 TRLEVRRKLLHISGGLLFLLY--ILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLSELLSLIEREREKNGP 92 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhHHHhcCC
Confidence 467888999999888776543 22222111111111111111 2221121110 1222456677777544332
Q ss_pred cccchHHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhcc
Q 026029 158 LTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDGKETESLC 201 (244)
Q Consensus 158 L~GpVyY~Isi~lL~llfW~~~PiaiigIlvLa~GDGLAaLVG~ 201 (244)
..|..+|.++.++++.++++. +++.+||++|++|||+|+++|+
T Consensus 93 ~~g~~~~~~~~~i~~~~lf~~-~~~~~~I~~l~~GD~lAsiiG~ 135 (216)
T COG0170 93 GLGGIIYFIGGGLLASLLFPI-EVAIAGILVLALGDGLASIIGK 135 (216)
T ss_pred CcCcHHHHHHHHHHHHHHccH-HHHHHHHHHHHHhhHHHHHhCc
Confidence 568999999999999988874 5799999999999999999999
No 3
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=98.28 E-value=5.8e-06 Score=71.64 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCcccccchhhhhhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhcCCccccchh
Q 026029 65 VSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEAT 144 (244)
Q Consensus 65 lt~~~v~~vL~i~e~L~kr~~l~~elsRKiVHIg~G~V~~l~w~lF~~~~~a~llAal~~~ln~l~~~~~Glg~~~~~~l 144 (244)
..+.+++..+...|+.+.++...++..|+..|+.........+...............+.......++..+
T Consensus 26 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 96 (259)
T PF01148_consen 26 LLLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLIPYFFATILIIALLLFLVLG--------- 96 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHhhhc---------
Confidence 34444556677778888887788888888888866655444433333332444444444444444432221
Q ss_pred hhhheecCCcccccccchHHHHHHHHHHHHhcCC-ChhHHHHHHHHhhhhhhhhhhcc
Q 026029 145 VKSMSRYGDRRELLTGPLYYAITITLACVIYWRN-SPNGIAAICNLCAGDGKETESLC 201 (244)
Q Consensus 145 v~smsR~Gd~~elL~GpVyY~Isi~lL~llfW~~-~PiaiigIlvLa~GDGLAaLVG~ 201 (244)
-.+.++......|.+|.++.........|.+ .+....+++++++||++|+++|+
T Consensus 97 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gD~~A~l~G~ 151 (259)
T PF01148_consen 97 ---ERRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPLALIGILILGIGDSFAYLVGR 151 (259)
T ss_pred ---chHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222223333333332223334443 34589999999999999999999
No 4
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=96.27 E-value=0.015 Score=57.54 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=55.9
Q ss_pred cccccchhhhhhhhhHHHHHHhh--ccCCchHHHH---HHHHHHHHHHHHHHhh-cCCccccchhhhhheecCCcccccc
Q 026029 86 FDQKLNRKLVHISIGLIFMLCWP--LFSSGPRGAI---LASLTPGVNIIRMLLV-GSGMWKDEATVKSMSRYGDRRELLT 159 (244)
Q Consensus 86 l~~elsRKiVHIg~G~V~~l~w~--lF~~~~~a~l---lAal~~~ln~l~~~~~-Glg~~~~~~lv~smsR~Gd~~elL~ 159 (244)
.++...||.-|..+ ++...| .|+.+..-.. .-++|..++++|+.-. -+|=.. ...++...+++|.
T Consensus 309 ~~~t~~RK~~Hlli---V~l~iP~li~d~~fL~lA~s~~LavFl~lE~IR~~ri~PlG~~l-~~fl~~F~DeRDs----- 379 (510)
T KOG2468|consen 309 LNETTSRKYFHLLI---VLLYIPGLIFDPNFLYLAFSGALAVFLFLEYIRFLRIPPLGSAL-HLFLSRFTDERDS----- 379 (510)
T ss_pred hhHHHHHHHHHHHH---HHHHhhHHhcCchhHHHHHhhHHHHHHHHHHHHHhcCCCchHHH-HHHHHHhcccccC-----
Confidence 33458899999954 323333 3555532221 1234556788886322 111000 1233455555553
Q ss_pred cchH---HHHHHHHHHHHhcC-CChh-------HHHHHHHHhhhhhhhhhhcc
Q 026029 160 GPLY---YAITITLACVIYWR-NSPN-------GIAAICNLCAGDGKETESLC 201 (244)
Q Consensus 160 GpVy---Y~Isi~lL~llfW~-~~Pi-------aiigIlvLa~GDGLAaLVG~ 201 (244)
||+. +.+-+++. +=-|- +.|. -.+|++.++.||-+|+++|+
T Consensus 380 GpLIiSh~yLLiGcs-lPIWms~~p~~~~ral~~laGiLalGiGDTmASiiG~ 431 (510)
T KOG2468|consen 380 GPLIISHFYLLIGCS-LPIWMSNSPCGGDRALALLAGILALGIGDTMASIIGK 431 (510)
T ss_pred CceeHHHHHHHHhcc-cchhccCCCCCchhhhhhhhhheeeccchHHHHHHhh
Confidence 5542 22222221 11353 3333 36899999999999999999
No 5
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=75.71 E-value=5.7 Score=33.58 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=40.7
Q ss_pred HHHHHHhhccCcccccchhhhhhhhhHH-HHHHhhc-cCC---chHHHHHHHHHHHHHHHHHHhhcCCccccchhhhhhe
Q 026029 75 RLWEETARRDLFDQKLNRKLVHISIGLI-FMLCWPL-FSS---GPRGAILASLTPGVNIIRMLLVGSGMWKDEATVKSMS 149 (244)
Q Consensus 75 ~i~e~L~kr~~l~~elsRKiVHIg~G~V-~~l~w~l-F~~---~~~a~llAal~~~ln~l~~~~~Glg~~~~~~lv~sms 149 (244)
.++-++.|+++++-.+.+=-+=+..+.. +...+.+ .+. .....-.+..+|++..+-..+---++.+||++++|++
T Consensus 68 l~aIFlyKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lp~vaii~~~LA~r~I~kDEkLVrS~D 147 (149)
T PF14126_consen 68 LIAIFLYKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSGELGATFSFGIGFFLPLVAIIFLWLANRAIKKDEKLVRSAD 147 (149)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3445666766666666663333333311 1111111 221 1233445556666555555555556779999999998
Q ss_pred e
Q 026029 150 R 150 (244)
Q Consensus 150 R 150 (244)
|
T Consensus 148 R 148 (149)
T PF14126_consen 148 R 148 (149)
T ss_pred c
Confidence 8
No 6
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.71 E-value=11 Score=36.30 Aligned_cols=93 Identities=18% Similarity=0.124 Sum_probs=46.2
Q ss_pred ccccchhhhhhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhcCCccccchhhhhheecCCcccccccchHHHH
Q 026029 87 DQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEATVKSMSRYGDRRELLTGPLYYAI 166 (244)
Q Consensus 87 ~~elsRKiVHIg~G~V~~l~w~lF~~~~~a~llAal~~~ln~l~~~~~Glg~~~~~~lv~smsR~Gd~~elL~GpVyY~I 166 (244)
.+|+.||+|||+.++..+.--.+++-+..+.++-.+=-....+. +-.++..-. |++.+ +|=..++.
T Consensus 190 keeiprqlvyi~l~l~hI~gAYllnl~rlgLvLl~LhYftellf---------Hi~rlfyf~---dek~~--k~fslwa~ 255 (374)
T KOG1608|consen 190 KEEIPRQLVYIILHLFHIAGAYLLNLNRLGLVLLTLHYFTELLF---------HIARLFYFS---DEKYQ--KLFSLWAA 255 (374)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------HHHHHheec---ccchh--HHHHHHHH
Confidence 78999999999998664322222332323322222211222222 111222222 22222 23344444
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhcc
Q 026029 167 TITLACVIYWRNSPNGIAAICNLCAGDGKETESLC 201 (244)
Q Consensus 167 si~lL~llfW~~~PiaiigIlvLa~GDGLAaLVG~ 201 (244)
++.+ -| .+.+-+.+|++|=|+|..=-+
T Consensus 256 vF~l-----~R---l~tliiaVlt~gfgla~~en~ 282 (374)
T KOG1608|consen 256 VFVL-----GR---LGTLIIAVLTVGFGLAGAENQ 282 (374)
T ss_pred HHHH-----HH---HHHHHHHHHHHHhhhcccccc
Confidence 4433 11 356677888889898876554
No 7
>COG3302 DmsC DMSO reductase anchor subunit [General function prediction only]
Probab=25.14 E-value=6e+02 Score=24.18 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=21.8
Q ss_pred ccchhhhhheecCC---cccccccchHHHHHH
Q 026029 140 KDEATVKSMSRYGD---RRELLTGPLYYAITI 168 (244)
Q Consensus 140 ~~~~lv~smsR~Gd---~~elL~GpVyY~Isi 168 (244)
+..+-.++++|.|+ .+|...|.+|++..-
T Consensus 64 ~PlRA~naL~rvg~SwLSnEI~~~~lf~a~~G 95 (281)
T COG3302 64 SPLRAFNALNRVGSSWLSNEIAAGSLFFALAG 95 (281)
T ss_pred ChhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34466788888874 568888999999884
No 8
>COG2237 Predicted membrane protein [Function unknown]
Probab=22.73 E-value=2.1e+02 Score=28.11 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHhhccCcccccchhhhhhhhhHHHHHHhhc---cCCchHHHHHHHHHHHHHHHHHHhhcCCccc
Q 026029 75 RLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPL---FSSGPRGAILASLTPGVNIIRMLLVGSGMWK 140 (244)
Q Consensus 75 ~i~e~L~kr~~l~~elsRKiVHIg~G~V~~l~w~l---F~~~~~a~llAal~~~ln~l~~~~~Glg~~~ 140 (244)
.+.++++| -++|++|++.-. .|+++++.-.+ .-..+.+... .+..+..+-++.+|+|+..
T Consensus 144 li~~~l~k---tDpe~~~~vL~p-~Glv~l~y~i~~l~~i~~~~~~~~--~i~livGly~l~kGfgl~~ 206 (364)
T COG2237 144 LIKRYLKK---TDPEYSRTVLGP-PGLVLLLYGILALANILYPAGAVI--GILLIVGLYMLYKGFGLDD 206 (364)
T ss_pred HHHHHHhh---cChhhheeeech-hhHHHHHHHHHHHHhcccchHHHH--HHHHHHHHHHHHHhcCHHH
Confidence 35677777 489999988776 67665443322 1222122222 1455667777889999643
No 9
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.30 E-value=1.7e+02 Score=23.51 Aligned_cols=51 Identities=6% Similarity=0.014 Sum_probs=24.1
Q ss_pred cccccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhhh
Q 026029 45 PSAAMLLPQNPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLV 95 (244)
Q Consensus 45 ~~~~~~~~~~p~~~D~~a~~lt~~~v~~vL~i~e~L~kr~~l~~elsRKiV 95 (244)
+.+.+|..|+-..=|...+++.+.++.+++.-..=.++|++-.+.+-|-+|
T Consensus 20 ~p~~~~~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI 70 (94)
T PF05393_consen 20 TPVVSMFVNNWPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVI 70 (94)
T ss_pred cceeEeecCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccc
Confidence 445555555533334444555555544333333334444444555666553
No 10
>PRK13592 ubiA prenyltransferase; Provisional
Probab=20.00 E-value=7.7e+02 Score=23.51 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=10.7
Q ss_pred hhhhhheecCCccc
Q 026029 143 ATVKSMSRYGDRRE 156 (244)
Q Consensus 143 ~lv~smsR~Gd~~e 156 (244)
++.|.++++||+.|
T Consensus 192 EI~KdieD~gd~~~ 205 (299)
T PRK13592 192 EVCRKIRAPKDETE 205 (299)
T ss_pred HHHHhhcCCccccC
Confidence 67888888887665
Done!