Query 026029
Match_columns 244
No_of_seqs 130 out of 204
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ixt_A Spasmodic protein TX9A- 10.9 95 0.0033 18.6 1.1 14 228-241 14-27 (27)
2 2qjy_B Cytochrome C1; cytochro 10.6 1.1E+02 0.0039 27.4 2.0 48 49-97 215-263 (269)
3 3s8f_C Cytochrome C oxidase po 10.2 1.3E+02 0.0045 19.0 1.6 22 156-177 3-24 (34)
4 1wa7_B TIP, hypothetical 28.7 9.1 1.2E+02 0.0042 18.0 1.1 14 23-36 5-18 (26)
5 4efo_A Serine/threonine-protei 8.8 55 0.0019 24.8 -0.7 14 86-99 6-19 (94)
6 3myw_I Bowman-BIRK type trypsi 8.4 1.2E+02 0.0042 22.1 1.1 18 218-235 31-48 (72)
7 3mly_P HIV-1 GP120 third varia 8.3 46 0.0016 18.3 -1.0 11 91-101 3-13 (23)
8 3mlz_P HIV-1 GP120 third varia 8.0 56 0.0019 18.3 -0.7 10 91-100 4-13 (25)
9 3bz1_X Photosystem II PSBX pro 7.7 5.6E+02 0.019 17.4 4.4 31 54-84 13-44 (50)
10 3cx5_D Cytochrome C1, heme pro 7.7 1.1E+02 0.0037 27.1 0.6 28 68-96 214-241 (248)
No 1
>1ixt_A Spasmodic protein TX9A-like protein; conotoxin, P-superfamily, ICK, inhibitory cystine knot, conus gloriamaris, GM9A, GM9.1; NMR {Synthetic} SCOP: g.3.6.1
Probab=10.86 E-value=95 Score=18.59 Aligned_cols=14 Identities=50% Similarity=0.968 Sum_probs=10.1
Q ss_pred ccceeeecceeeec
Q 026029 228 KNCICTFTDIFAIN 241 (244)
Q Consensus 228 ~~~~~~~~~~~~~~ 241 (244)
..|||||..--+.|
T Consensus 14 shcic~~~~c~~vn 27 (27)
T 1ixt_A 14 SHCICTFRGCGAVN 27 (27)
T ss_dssp SSEEEETTEEEECC
T ss_pred hceeeeecccccCC
Confidence 57999997655544
No 2
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=10.55 E-value=1.1e+02 Score=27.37 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=16.5
Q ss_pred cccCCCChhhhHHHHH-HHHHHHHHHHHHHHHHhhccCcccccchhhhhh
Q 026029 49 MLLPQNPVLSDVCASA-VSAAVAASCLRLWEETARRDLFDQKLNRKLVHI 97 (244)
Q Consensus 49 ~~~~~~p~~~D~~a~~-lt~~~v~~vL~i~e~L~kr~~l~~elsRKiVHI 97 (244)
++|.++|-..+==.+. .++++++++..++-+++|+.+ +.-=+||++..
T Consensus 215 L~waaEP~~~~Rk~lG~~Vl~fL~il~~l~y~~kr~~W-~~vk~~~~~~~ 263 (269)
T 2qjy_B 215 LMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTNKRLW-AGVKGKKKTNV 263 (269)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTC-------
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccceecc
Confidence 4555555543221111 233333334444444555443 33337888753
No 3
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=10.19 E-value=1.3e+02 Score=18.99 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=17.2
Q ss_pred cccccchHHHHHHHHHHHHhcC
Q 026029 156 ELLTGPLYYAITITLACVIYWR 177 (244)
Q Consensus 156 elL~GpVyY~Isi~lL~llfW~ 177 (244)
|.++||+.-....+...+.+|-
T Consensus 3 ~~l~GTl~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 3 EKPKGALAVILVLTLTILVFWL 24 (34)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceehHHHHHHHHHHHHHH
Confidence 3467999988888888888885
No 4
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=9.12 E-value=1.2e+02 Score=18.03 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=9.8
Q ss_pred CCCCCCCCcccccc
Q 026029 23 SPSPKFPPRFSQFS 36 (244)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (244)
-|.|+.|||=....
T Consensus 5 ~P~P~LPpRPaNLG 18 (26)
T 1wa7_B 5 MPTPPLPPRPANLG 18 (26)
T ss_dssp CCCCCCCCCTTSTT
T ss_pred CCCCCCCCCccccc
Confidence 37899999865443
No 5
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=8.80 E-value=55 Score=24.82 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=9.8
Q ss_pred cccccchhhhhhhh
Q 026029 86 FDQKLNRKLVHISI 99 (244)
Q Consensus 86 l~~elsRKiVHIg~ 99 (244)
++.=++||+||+..
T Consensus 6 ~~dIL~rkvvHVf~ 19 (94)
T 4efo_A 6 TSDILHRMVIHVFS 19 (94)
T ss_dssp GGCGGGEEEEEEEE
T ss_pred HHHHHhceeEEEEE
Confidence 34557899999853
No 6
>3myw_I Bowman-BIRK type trypsin inhibitor; serine proteinase, bowman-BIRK-type inhibitor, hydrolase-HYD inhibitor complex; 2.50A {Vigna radiata var}
Probab=8.43 E-value=1.2e+02 Score=22.14 Aligned_cols=18 Identities=44% Similarity=0.864 Sum_probs=14.9
Q ss_pred hhccccccccccceeeec
Q 026029 218 LNLFSCKLDIKNCICTFT 235 (244)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~ 235 (244)
+.|-+|.-.-|.|+||+.
T Consensus 31 irl~sCHSaCksC~Ct~S 48 (72)
T 3myw_I 31 IRLNSCHSACKSCICTRS 48 (72)
T ss_dssp CEESCCCSSCSCEEEESS
T ss_pred cCccchhhhhhceeeccc
Confidence 456789999999999984
No 7
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=8.30 E-value=46 Score=18.33 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=8.3
Q ss_pred chhhhhhhhhH
Q 026029 91 NRKLVHISIGL 101 (244)
Q Consensus 91 sRKiVHIg~G~ 101 (244)
.||-+||+-|-
T Consensus 3 trk~i~iGpG~ 13 (23)
T 3mly_P 3 TKKSIKIRPRQ 13 (26)
T ss_pred eEEEEeecCCe
Confidence 57888997763
No 8
>3mlz_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 2.99A {Human immunodeficiency virus 1}
Probab=7.98 E-value=56 Score=18.30 Aligned_cols=10 Identities=50% Similarity=0.717 Sum_probs=7.9
Q ss_pred chhhhhhhhh
Q 026029 91 NRKLVHISIG 100 (244)
Q Consensus 91 sRKiVHIg~G 100 (244)
.||-+||+-|
T Consensus 4 trk~i~iGpG 13 (25)
T 3mlz_P 4 TRKGIHIGPG 13 (26)
T ss_dssp CCCCCEECTT
T ss_pred EEEEEeecCC
Confidence 6788899766
No 9
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=7.71 E-value=5.6e+02 Score=17.41 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=18.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHH-HHHhhcc
Q 026029 54 NPVLSDVCASAVSAAVAASCLRLW-EETARRD 84 (244)
Q Consensus 54 ~p~~~D~~a~~lt~~~v~~vL~i~-e~L~kr~ 84 (244)
.|+..+++..++.++.++++...+ -+..+++
T Consensus 13 TpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D 44 (50)
T 3bz1_X 13 TPSLKGFFIGLLSGAVVLGLTFAVLIAISQID 44 (50)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHheeeeccC
Confidence 577778877777766655443333 3444443
No 10
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=7.67 E-value=1.1e+02 Score=27.11 Aligned_cols=28 Identities=18% Similarity=0.040 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhccCcccccchhhhh
Q 026029 68 AVAASCLRLWEETARRDLFDQKLNRKLVH 96 (244)
Q Consensus 68 ~~v~~vL~i~e~L~kr~~l~~elsRKiVH 96 (244)
++++++..++-+++|+ .++.-=+||+++
T Consensus 214 ~fL~il~~l~y~~kr~-~W~~vk~~k~~~ 241 (248)
T 3cx5_D 214 IILSSLYLLSIWVKKF-KWAGIKTRKFVF 241 (248)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHH-hhhhcccCceec
Confidence 3333344444444444 333333677765
Done!