RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 026029
         (244 letters)



>gnl|CDD|213973 TIGR04360, other_trbK, conjugative transfer region protein TrbK. 
          Members of this family regularly are encoded between
          the TrbJ and TrbL proteins essential for P-type
          conjugal transfer, and therefore are designated TrbK.
          Positional analogy to family TIGR04359 (the entry
          exclusion lipoprotein TrbK of IncP plasmid RP4), which
          is a lipoprotein and not homologous, suggests this
          protein may also be involved in entry exclusion.
          Members of this family are small, with a
          non-lipoprotein signal peptide and a conserved
          disulfide bond [Mobile and extrachromosomal element
          functions, Plasmid functions].
          Length = 74

 Score = 27.3 bits (61), Expect = 2.0
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 39 RPNLTSPSAAMLLPQNPVLS---DVCAS-AVSAAVAASCLRLWEETARR 83
          RP      A    P    L+     C +  ++AA    C   W E  RR
Sbjct: 23 RPAEPPVPAPAAEPPADPLAAELARCRTLGMAAAEDPRCRAAWAENRRR 71


>gnl|CDD|220712 pfam10355, Ytp1, Protein of unknown function (Ytp1).  This is a
           family of proteins found in fungi. The region appears to
           contain regions similar to mitochondrial electron
           transport proteins. The C-terminal domain is hydrophobic
           and negatively charged. There are consensus sites for
           both N-linked glycosylation and cAMP-dependent protein
           kinase phosphorylation.
          Length = 272

 Score = 27.6 bits (62), Expect = 5.5
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 14/77 (18%)

Query: 102 IFMLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSG---MWKDEATVKSMSRYGDRRELL 158
           +F+L  P  SS P       LTP        L+  G   M   E  V+++  YG     L
Sbjct: 195 LFLLLDPPSSSLPSRPPTEYLTP------FCLIAGGLVFMGSTEEQVQALEYYG-----L 243

Query: 159 TGPLYYAITITLACVIY 175
               Y  + + LA ++ 
Sbjct: 244 DHMFYLLVLVGLAFLLM 260


>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and
           metabolism].
          Length = 447

 Score = 28.0 bits (63), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 58  SDVCASAVSAAVAASCLRLW 77
           SD  A+A++AA+ A  + +W
Sbjct: 199 SDYSAAALAAALGADEVEIW 218


>gnl|CDD|235940 PRK07115, PRK07115, AMP nucleosidase; Provisional.
          Length = 258

 Score = 27.6 bits (62), Expect = 6.4
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 12/50 (24%)

Query: 75  RLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSG-----PRGAIL 119
           R WE        D++    L       I M    LF++G     P GA+L
Sbjct: 162 RFWE-------HDKEFKEYLYETRAQAIDMETATLFAAGFANNIPTGALL 204


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0832    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,211,814
Number of extensions: 1127303
Number of successful extensions: 1366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1365
Number of HSP's successfully gapped: 20
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (25.9 bits)