RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026029
(244 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-06
Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 68/212 (32%)
Query: 3 LTTANFSICPSIFLRRIRVRSPSPKFPPRFSQFSISRPNL-TSPSAAMLLPQNPVLSDVC 61
L + S CP I + + + + ++ L +P L +
Sbjct: 231 LLSIPIS-CPLIGVIQ-------------LAHYVVTAKLLGFTPGE--LRSYLKGAT-GH 273
Query: 62 ASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHIS--IGLIFMLCWPLFSSGPRGAIL 119
+ + AVA + WE F RK + + IG+ +P S P +
Sbjct: 274 SQGLVTAVAIAETDSWES------FFV-SVRKAITVLFFIGVRCYEAYPNTSLPPS-ILE 325
Query: 120 ASL-------TPGVNIIRMLLVGSGMWKD--EATVKSMSRYGDRRELLTGPLYYAITITL 170
SL +P ML + S + ++ + V + + + + I+L
Sbjct: 326 DSLENNEGVPSP------MLSI-SNLTQEQVQDYVNKTNSHLPAGK--------QVEISL 370
Query: 171 ACVIYWRNSPNGIAAICNL-CAGDGKETESLC 201
N NL +G +SL
Sbjct: 371 ------VNGAK------NLVVSGP---PQSLY 387
Score = 43.1 bits (101), Expect = 5e-05
Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 65/217 (29%)
Query: 19 IRVRS----PSPKFPPRFSQFSISRPNLTSPSAAMLLPQNPVLSDVCASAVSAAVAASCL 74
I VR P+ PP + S+ N PS ML +S++ V V +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSP-ML-----SISNLTQEQVQDYVNKTNS 358
Query: 75 RLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILA----SLTPGVNI-I 129
L + I L+ +G + +++ SL G+N+ +
Sbjct: 359 HLPAGK---------------QVEISLV---------NGAKNLVVSGPPQSLY-GLNLTL 393
Query: 130 RMLLVGSGMWKDEATVKSMSR--YGDRREL-LTGP-----LYYAITITLACV----IYWR 177
R SG+ D++ + R R L + P L A + + + +
Sbjct: 394 RKAKAPSGL--DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 178 NSPNGIAAIC-----NLCAGDGKETESLC-----MPV 204
I +L G +E + +PV
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 35.0 bits (80), Expect = 0.023
Identities = 40/263 (15%), Positives = 68/263 (25%), Gaps = 116/263 (44%)
Query: 17 RRIRVRSPS----------PKFPPRFSQFSISRPNLT--SPSAAMLLPQN--PVLSDVCA 62
+RIR + K F + + + T S + Q P L
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL----- 1736
Query: 63 SAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILA-- 120
+ + + GLI P A A
Sbjct: 1737 ----TLMEKAAFEDLKSK-------------------GLI-----------PADATFAGH 1762
Query: 121 SLTPGVNIIRMLLVG--------SGMWKDEATVK-------SMSRYGDRRELLTGPLYYA 165
SL G + + E+ V+ +M R EL G Y
Sbjct: 1763 SL------------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL--GRSNYG 1808
Query: 166 ITITLACVIYWRNSPNGIAAICN------LCAGDGKETESLCMP----------VLSSLF 209
+ +A +P +AA + + GK T L V +
Sbjct: 1809 M---IAI------NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--- 1856
Query: 210 TG-LSAVQYL-NLFSCKLDIKNC 230
G L A+ + N+ + + ++
Sbjct: 1857 -GDLRALDTVTNVLN-FIKLQKI 1877
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 7e-04
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 67/224 (29%)
Query: 18 RIRVRSPSPKFPPRFSQFSISRPNLTSPSAAMLLPQNPVLSDVCASAVSAAVAASCLRLW 77
I++R S + + S+P LL VL +V + A SC ++
Sbjct: 222 NIKLRIHSIQ--AELRRLLKSKPYENC-----LL----VLLNVQNAKAWNAFNLSC-KIL 269
Query: 78 EETARRDLFDQKLNRKLVHISI-----GL-------IFMLC-WPLFSSGPRGAILASLTP 124
T + + D HIS+ L + + PR + + P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--P 327
Query: 125 -GVNII-RMLLVGSGMWKD-------------EATVKSMSRYGDRRELLTGPLYYAITI- 168
++II + G W + E+++ + R+ ++ +++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------MFDRLSVF 381
Query: 169 ---------TLACVIYWRNS----PNGIAAICN---LCAGDGKE 196
L + W + + + L KE
Sbjct: 382 PPSAHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Score = 30.2 bits (67), Expect = 0.65
Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 69/248 (27%)
Query: 12 PSIFLRR-IRVRSPSPKFPPRFSQFSISRPNLTSPSAAMLLPQNPVLSDVCASAVS---- 66
PS+ R I R F+++++SR LL P A V
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP------AKNVLIDGV 158
Query: 67 AAVAASCLRLWEETARRDLFDQKLNRKLVH-ISIG-------LIFM---LCW---PLFSS 112
+ + L + K++ K + +++ ++ M L + P ++S
Sbjct: 159 LGSGKTWVAL--DVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 113 GPRGAI-----LASLTPGVNII-------RMLLVGSGMWKDEATVKSMSRYGDRRELLTG 160
+ + S+ + + LLV + + + + + LLT
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFN--LSCKILLT- 271
Query: 161 PLYYAITITLACVIYWRNSPNGIAAICNLCAGDGKETESLCMPVLSSLFTGLSAVQYLNL 220
T R + L A L L+ + +L
Sbjct: 272 ------T---------RFK--QVTDF--LSAATTTH------ISLDHHSMTLTPDEVKSL 306
Query: 221 FSCKLDIK 228
LD +
Sbjct: 307 LLKYLDCR 314
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Length = 446
Score = 27.3 bits (61), Expect = 6.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 58 SDVCASAVSAAVAASCLRLW 77
SDV S +SA V A W
Sbjct: 188 SDVTGSIISAGVNADLYENW 207
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain,
alloste S-adenosylmethionine, lysine, allosteric
effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis
thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Length = 510
Score = 26.6 bits (59), Expect = 9.2
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 58 SDVCASAVSAAVAASCLRLW 77
SD+ A+ + A+ +++W
Sbjct: 233 SDLTATTIGKALGLKEIQVW 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.433
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,639,027
Number of extensions: 205411
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 12
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.2 bits)