RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026029
         (244 letters)



>d1rtya_ a.25.2.2 (A:) Putative ATP-binding cobalamin
           adenosyltransferase YvqK {Bacillus subtilis [TaxId:
           1423]}
          Length = 161

 Score = 26.2 bits (57), Expect = 2.7
 Identities = 7/45 (15%), Positives = 19/45 (42%)

Query: 178 NSPNGIAAICNLCAGDGKETESLCMPVLSSLFTGLSAVQYLNLFS 222
              +  A++ ++     +  E   + ++ S     + ++YLN  S
Sbjct: 92  PGGSKCASLLHIARTITRRAERRVVALMKSEEIHETVLRYLNRLS 136


>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 149

 Score = 25.8 bits (56), Expect = 4.1
 Identities = 5/45 (11%), Positives = 13/45 (28%)

Query: 178 NSPNGIAAICNLCAGDGKETESLCMPVLSSLFTGLSAVQYLNLFS 222
              +  +A  ++     +  E   +          + + Y N  S
Sbjct: 84  PGGSVESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLS 128


>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
           OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 374

 Score = 25.8 bits (57), Expect = 6.0
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 11/41 (26%)

Query: 19  IRVRSPSPKFPPRFSQFSISRPN-----------LTSPSAA 48
           I    PS +  PRF +F I RP            L SP A 
Sbjct: 153 IDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRAT 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 895,174
Number of extensions: 38775
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 3
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.9 bits)