BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026031
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 142/224 (63%), Gaps = 11/224 (4%)
Query: 1 MVADRGKKSKVAEDENADGID----TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKY 56
M A K SK + N DG D E +IE + EVQ+E++++NE+AS+++L++EQKY
Sbjct: 1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKY 60
Query: 57 NEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS 116
N++R+P + KR+E+I IP+FW+ F++HP + LL EED++ Y+ ++V +F+D+KS
Sbjct: 61 NKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKS 120
Query: 117 GYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEG--MGSTNGINHEKNGNK 174
GY I F F+ENP+FEN LSK F + G T IKWK G M + K K
Sbjct: 121 GYRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRK 180
Query: 175 RPLAE-ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
R E ESFF+WF T+ D DE+ E+IK+D+WPNPL+Y+
Sbjct: 181 RQHEEPESFFTWF--TDHSDAG--ADELGEVIKDDIWPNPLQYY 220
>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|B Chain B, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|C Chain C, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|D Chain D, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|E Chain E, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|F Chain F, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
Length = 193
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPV 87
++ +++Q ++E+++ + + + + I+++Y+E ++P++ KR+EII+ IP FW N HP
Sbjct: 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 88 LCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPH--FENTKLSKTFTFLDEG 145
L D++ ED I ++ LD++D D Y ITFIF E E L K TF +
Sbjct: 62 LSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQ 120
Query: 146 TTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEII 205
+ T IKWKEG + H ++ + + S F WF E +D + +V E+I
Sbjct: 121 EKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQD----KPDVGELI 176
Query: 206 KEDLWPNPLKYF 217
+ ++W NPL Y+
Sbjct: 177 RREIWHNPLSYY 188
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 45/249 (18%)
Query: 14 DENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII-- 71
DE + E +++KL+ Q E + ++ + QKY+++ P+Y+KR E +
Sbjct: 7 DEKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVG 66
Query: 72 --------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD---VEDFKDVKSGYCI 120
++P+FWL A ++ + ++ + D++I Y+N + ++ K+ K G+ +
Sbjct: 67 NGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFIL 126
Query: 121 TFIFNENPHFENTKLSKTFTF--LDEGTTKIT----GTVIKW--KEGMGSTNGINHEKNG 172
+F F NP F N+ L+KT+ +D + TVI W + + N + + N
Sbjct: 127 SFHFAPNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNK 186
Query: 173 NKR-------PLAEESFFSWFA----------------ETEQKDF-VELQDEVAEIIKED 208
N R + +SFF +F E Q + +E EVA IKE
Sbjct: 187 NSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKER 246
Query: 209 LWPNPLKYF 217
+ P + YF
Sbjct: 247 IIPYAVDYF 255
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum
pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum At 2.4 A Resolution
Length = 249
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 45/236 (19%)
Query: 27 SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII----------KSIPD 76
+++KL+ Q E + ++ + QKY+++ P+Y+KR E + ++P+
Sbjct: 10 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 69
Query: 77 FWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD---VEDFKDVKSGYCITFIFNENPHFENT 133
FWL A ++ + ++ + D++I Y+N + ++ K+ K G+ ++F F NP F N+
Sbjct: 70 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 129
Query: 134 KLSKTFTF--LDEGTTKIT----GTVIKW--KEGMGSTNGINHEKNGNKR-------PLA 178
L+KT+ +D + TVI W + + N + + N N R +
Sbjct: 130 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 189
Query: 179 EESFFSWFA----------------ETEQKDF-VELQDEVAEIIKEDLWPNPLKYF 217
+SFF +F E Q + +E EVA IKE + P + Y+
Sbjct: 190 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYY 245
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly
Protein (Nap)
Length = 359
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 45/236 (19%)
Query: 27 SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII----------KSIPD 76
+++KL+ Q E + ++ + QKY+++ P+Y+KR E + ++P+
Sbjct: 54 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
Query: 77 FWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD---VEDFKDVKSGYCITFIFNENPHFENT 133
FWL A ++ + ++ + D++I Y+N + ++ K+ K G+ ++F F NP F N+
Sbjct: 114 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 173
Query: 134 KLSKTFTF--LDEGTTKIT----GTVIKW--KEGMGSTNGINHEKNGNKR-------PLA 178
L+KT+ +D + TVI W + + N + + N N R +
Sbjct: 174 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 233
Query: 179 EESFFSWFA----------------ETEQKDF-VELQDEVAEIIKEDLWPNPLKYF 217
+SFF +F E Q + +E EVA IKE + P + Y+
Sbjct: 234 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYY 289
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 69 EIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNE-- 126
E +K IP FWL A + P++CD + + D ++ +Y+ + +E D + G+ + F F+
Sbjct: 180 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSA 239
Query: 127 NPHFENTKLSKTFTFLDE 144
NP F N L KT+ + E
Sbjct: 240 NPFFTNDILCKTYFYQKE 257
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 45/159 (28%)
Query: 31 LQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII------------------- 71
L+ +Q EL +V +E ++ E+E K+ + +P++ +R+ II
Sbjct: 26 LKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVE 85
Query: 72 ------------------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD 107
K IP FWL A + P++CD + + D ++ +Y+ +
Sbjct: 86 SLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG 145
Query: 108 VEDFKDVKSGYCITFIFNE--NPHFENTKLSKTFTFLDE 144
+E D + G+ + F F+ NP F N L KT+ + E
Sbjct: 146 LEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKE 184
>pdb|3C9B|A Chain A, Crystal Structure Of Semet Vps75
pdb|3C9B|B Chain B, Crystal Structure Of Semet Vps75
Length = 259
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 38 LEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQ 97
L K EE E+E +PVY KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASD- 76
Query: 98 KIFKYMNSLD--------VEDFKDVKSGYCITFIFNE-NPHFENTKLSKTFTF------L 142
FKY++++D +E + ITF F+ F+ +++K F
Sbjct: 77 --FKYIDTIDKIKVEWLALESEXYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQ 134
Query: 143 DEGTTKITGTVIKWKEGMGSTNG--INHEKN--GNKR-PLAEESFFSWFAETEQKDFVEL 197
++G I+W + S N I +++ G K+ ++ F WF T K E
Sbjct: 135 EDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGXKTIFGWFRWTGLKPGKEF 194
Query: 198 Q--DEVAEIIKEDLWPNPLKYF 217
D +A + E+++P +KY+
Sbjct: 195 PHGDSLASLFSEEIYPFCVKYY 216
>pdb|2ZD7|A Chain A, The Structure Of Vps75 (Vacuolar Protein
Sorting-Associated Protein 75)
pdb|2ZD7|B Chain B, The Structure Of Vps75 (Vacuolar Protein
Sorting-Associated Protein 75)
pdb|3Q66|A Chain A, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q66|B Chain B, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q68|A Chain A, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
pdb|3Q68|B Chain B, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
Length = 264
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 33/206 (16%)
Query: 38 LEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQ 97
L K EE E+E +PVY KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASD- 76
Query: 98 KIFKYMNSLD------------VEDFKDVKSGYCITFIFNE-NPHFENTKLSKTFTF--- 141
FKY++++D + D +D + ITF F+ F+ +++K F
Sbjct: 77 --FKYIDTIDKIKVEWLALESEMYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKG 130
Query: 142 ---LDEGTTKITGTVIKWKEGMGSTNG--INHEKN--GNKR-PLAEESFFSWFAETEQKD 193
++G I+W + S N I +++ G K+ ++ F WF T K
Sbjct: 131 KDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIFGWFRWTGLKP 190
Query: 194 FVELQ--DEVAEIIKEDLWPNPLKYF 217
E D +A + E+++P +KY+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216
>pdb|3Q33|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
pdb|3Q35|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 232
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 33/206 (16%)
Query: 38 LEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQ 97
L K EE E+E +PVY KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASD- 76
Query: 98 KIFKYMNSLD------------VEDFKDVKSGYCITFIFNE-NPHFENTKLSKTFTF--- 141
FKY++++D + D +D + ITF F+ F+ +++K F
Sbjct: 77 --FKYIDTIDKIKVEWLALESEMYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKG 130
Query: 142 ---LDEGTTKITGTVIKWKEGMGSTNG--INHEKN--GNKR-PLAEESFFSWFAETEQKD 193
++G I+W + S N I +++ G K+ ++ F WF T K
Sbjct: 131 KDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIFGWFRWTGLKP 190
Query: 194 FVELQ--DEVAEIIKEDLWPNPLKYF 217
E D +A + E+++P +KY+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216
>pdb|3C9D|A Chain A, Crystal Structure Of Vps75
pdb|3C9D|B Chain B, Crystal Structure Of Vps75
Length = 259
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 33/206 (16%)
Query: 38 LEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQ 97
L K EE E+E +PVY KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASD- 76
Query: 98 KIFKYMNSLD------------VEDFKDVKSGYCITFIFNE-NPHFENTKLSKTFTF--- 141
FKY++++D + D +D + ITF F+ F+ +++K F
Sbjct: 77 --FKYIDTIDKIKVEWLALESEMYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKG 130
Query: 142 ---LDEGTTKITGTVIKWKEGMGSTNG--INHEKN--GNKR-PLAEESFFSWFAETEQKD 193
++G I+W + S N I +++ G K+ ++ F WF T K
Sbjct: 131 KDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIFGWFRWTGLKP 190
Query: 194 FVELQ--DEVAEIIKEDLWPNPLKYF 217
E D +A + E+++P +KY+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216
>pdb|3DM7|A Chain A, Crystal Structure Of The Vps75 Histone Chaperone
pdb|3DM7|B Chain B, Crystal Structure Of The Vps75 Histone Chaperone
Length = 234
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 31/205 (15%)
Query: 38 LEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQ 97
L K EE E+E +PVY KR+ I I +FW H + + D
Sbjct: 20 LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASD- 78
Query: 98 KIFKYMNSLD--------VEDFKDVKSGYCITFIFNE-NPHFENTKLSKTFTF------L 142
FKY +++D +E + ITF F+ F+ +++K F
Sbjct: 79 --FKYXDTIDKIKVEWLALESEXYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQ 136
Query: 143 DEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRP--------LAEESFFSWFAETEQKDF 194
++G I+W + S + IN + +KR ++ F WF T K
Sbjct: 137 EDGILTSEPVPIEWPQ---SYDSINPDLXKDKRSPEGKKKYRQGXKTIFGWFRWTGLKPG 193
Query: 195 VELQ--DEVAEIIKEDLWPNPLKYF 217
E D +A + E+++P +KY+
Sbjct: 194 KEFPHGDSLASLFSEEIYPFCVKYY 218
>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With
N-Terminal Pex19p Peptide
Length = 330
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 27/136 (19%)
Query: 17 ADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPD 76
DG+ TEL+ I+ Q VQ L V+ + S +L++EQK EIR V ++
Sbjct: 130 GDGL-TELITVIK--QAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-------S 179
Query: 77 FWLNAFLSHPVLCD-LLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFN------ENPH 129
W+N S P+LC ++ +E+ + L D +K + N E+P
Sbjct: 180 SWINKDGSKPLLCHYMMPDEETPLAVQACGLSPRDITTIK-------LLNETRDMLESPD 232
Query: 130 FE---NTKLSKTFTFL 142
F NT L++ F+ L
Sbjct: 233 FSTVLNTCLNRGFSRL 248
>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19
Derived Peptide
Length = 334
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 27/136 (19%)
Query: 17 ADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPD 76
DG+ TEL+ I+ Q VQ L V+ + S +L++EQK EIR V ++
Sbjct: 134 GDGL-TELITVIK--QAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-------S 183
Query: 77 FWLNAFLSHPVLCD-LLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFN------ENPH 129
W+N S P+L ++ +E+ + L D +K + N E+P
Sbjct: 184 SWINKDGSKPLLSHYMMPDEETPLAVQACGLSPRDITTIK-------LLNETRDMLESPD 236
Query: 130 FE---NTKLSKTFTFL 142
F NT L++ F+ L
Sbjct: 237 FSTVLNTCLNRGFSRL 252
>pdb|2IN5|A Chain A, Crystal Structure Of The Hypothetical Lipoprotein Ymcc
From Escherichia Coli (K12), Northeast Structural
Genomics Target Er552.
pdb|2IN5|B Chain B, Crystal Structure Of The Hypothetical Lipoprotein Ymcc
From Escherichia Coli (K12), Northeast Structural
Genomics Target Er552
Length = 207
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 104 NSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVI---KWKEGM 160
N+L ++D S + +++E+ HF + LS TF+F T I G + W+E +
Sbjct: 99 NALAIKD----GSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNVLCNVWQEEV 154
Query: 161 GST 163
ST
Sbjct: 155 TST 157
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII 71
+ + Q ++E N + ++LE + N+ RR +Y++RNE++
Sbjct: 617 KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELL 659
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII 71
+ + Q ++E N + ++LE + N+ RR +Y++RNE++
Sbjct: 617 KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELL 659
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli
pdb|2FSG|B Chain B, Complex Seca:atp From Escherichia Coli
Length = 853
Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII 71
+ + Q ++E N + ++LE + N+ RR +Y++RNE++
Sbjct: 617 KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELL 659
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 17 ADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIP 75
A ++ +L+ +L+++ LEK++EE+S VL + Q +I+ + + E+I I
Sbjct: 46 AKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIA 104
>pdb|1HBM|A Chain A, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|D Chain D, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBN|A Chain A, Methyl-Coenzyme M Reductase
pdb|1HBN|D Chain D, Methyl-Coenzyme M Reductase
pdb|1HBO|A Chain A, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|D Chain D, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBU|A Chain A, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|D Chain D, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|3M1V|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M1V|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|A Chain A, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|D Chain D, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
Length = 549
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1 MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEI 52
+VAD K DE AD ID V+ I K Q +D+ E + E D + ++
Sbjct: 156 LVADSYVKVFTGNDEIADEIDPAFVIDINK-QFPEDQAETLKAEVGDGIWQV 206
>pdb|1MRO|A Chain A, Methyl-Coenzyme M Reductase
pdb|1MRO|D Chain D, Methyl-Coenzyme M Reductase
Length = 548
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1 MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEI 52
+VAD K DE AD ID V+ I K Q +D+ E + E D + ++
Sbjct: 156 LVADSYVKVFTGNDEIADEIDPAFVIDINK-QFPEDQAETLKAEVGDGIWQV 206
>pdb|3POT|A Chain A, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
pdb|3POT|D Chain D, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
Length = 550
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1 MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEI 52
+VAD K DE AD ID V+ I K Q +D+ E + E D + ++
Sbjct: 157 LVADSYVKVFTGNDEIADEIDPAFVIDINK-QFPEDQAETLKAEVGDGIWQV 207
>pdb|2B81|A Chain A, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|B Chain B, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|C Chain C, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|D Chain D, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
Length = 323
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 165 GINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLK 215
G++HE G K A F++ E K+F +Q + E+ +L P P K
Sbjct: 147 GVSHETRGEKFREA----FAYLEEILYKNFPSIQSTLGEVHGANLVPKPSK 193
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 32 QEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPD-FWLNAFLSHPVLCD 90
Q+ ++EL+KV EEAS K +E E+ + S PD W + + V
Sbjct: 9 QKAEEELQKVLEEASKKAVEAER----------GAPGAALISYPDAIWWSVETATTVGYG 58
Query: 91 ---LLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNE 126
+ EE +K+ + + +E F V + F+ E
Sbjct: 59 DRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,847,086
Number of Sequences: 62578
Number of extensions: 300524
Number of successful extensions: 878
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 57
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)