Query 026031
Match_columns 244
No_of_seqs 127 out of 602
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00007 (NAP-L) nucleosome as 100.0 1.3E-59 2.8E-64 425.5 20.9 213 15-227 30-285 (337)
2 KOG1507 Nucleosome assembly pr 100.0 5.4E-58 1.2E-62 408.7 16.4 211 15-225 66-343 (358)
3 PTZ00008 (NAP-S) nucleosome as 100.0 1.5E-54 3.2E-59 365.0 16.3 181 40-225 2-184 (185)
4 PF00956 NAP: Nucleosome assem 100.0 3E-53 6.5E-58 372.3 21.0 197 25-221 1-244 (244)
5 KOG1508 DNA replication factor 100.0 1.2E-33 2.7E-38 249.5 10.1 204 15-222 21-224 (260)
6 PF11629 Mst1_SARAH: C termina 95.8 0.032 7E-07 36.9 5.4 36 31-66 10-45 (49)
7 PF07352 Phage_Mu_Gam: Bacteri 91.2 0.77 1.7E-05 37.3 6.5 56 22-77 3-58 (149)
8 COG4396 Mu-like prophage host- 85.9 1.9 4.2E-05 34.8 5.2 59 20-78 16-74 (170)
9 KOG1508 DNA replication factor 77.1 0.038 8.3E-07 49.3 -8.3 132 62-221 21-152 (260)
10 PF07516 SecA_SW: SecA Wing an 64.7 24 0.00052 30.1 6.5 46 28-73 8-53 (214)
11 PF05279 Asp-B-Hydro_N: Aspart 64.1 3.8 8.3E-05 36.2 1.5 50 179-237 9-61 (243)
12 PF06524 NOA36: NOA36 protein; 58.8 6.6 0.00014 35.1 2.0 9 114-122 139-147 (314)
13 KOG0574 STE20-like serine/thre 58.7 23 0.0005 32.9 5.5 39 28-66 453-491 (502)
14 PRK14082 hypothetical protein; 43.6 28 0.00061 24.4 2.8 9 72-80 55-63 (65)
15 PF05086 Dicty_REP: Dictyostel 42.2 15 0.00031 37.7 1.6 29 214-242 882-910 (911)
16 KOG1832 HIV-1 Vpr-binding prot 41.7 14 0.0003 38.7 1.4 6 131-136 1247-1252(1516)
17 PF08770 SoxZ: Sulphur oxidati 39.9 8.7 0.00019 29.2 -0.2 50 80-131 18-71 (100)
18 PF04931 DNA_pol_phi: DNA poly 39.9 17 0.00036 37.4 1.7 25 26-50 341-365 (784)
19 PRK02539 hypothetical protein; 39.8 55 0.0012 24.3 4.0 43 21-64 2-44 (85)
20 PRK01546 hypothetical protein; 38.9 55 0.0012 23.9 3.8 44 20-64 2-45 (79)
21 PF04871 Uso1_p115_C: Uso1 / p 37.8 24 0.00052 28.3 2.0 6 221-226 110-115 (136)
22 PF15290 Syntaphilin: Golgi-lo 37.6 2.6E+02 0.0056 25.5 8.5 21 91-111 139-159 (305)
23 smart00502 BBC B-Box C-termina 37.2 1.6E+02 0.0035 21.8 6.6 55 22-76 14-68 (127)
24 PRK13611 photosystem II reacti 36.4 1.7E+02 0.0037 22.5 6.3 64 91-161 6-70 (104)
25 COG1507 Uncharacterized conser 32.9 48 0.0011 27.2 3.0 67 21-92 56-130 (167)
26 PF05979 DUF896: Bacterial pro 32.6 1.5E+02 0.0033 20.8 5.1 41 23-64 2-42 (65)
27 PRK15422 septal ring assembly 32.0 95 0.0021 22.7 4.1 29 17-45 6-34 (79)
28 PF06320 GCN5L1: GCN5-like pro 31.5 2.5E+02 0.0055 21.9 7.0 65 19-84 33-99 (121)
29 PF10417 1-cysPrx_C: C-termina 31.5 16 0.00034 23.0 0.0 15 150-164 10-24 (40)
30 COG3074 Uncharacterized protei 31.3 1.2E+02 0.0026 21.7 4.4 63 18-82 7-69 (79)
31 PF08655 DASH_Ask1: DASH compl 29.5 1.3E+02 0.0029 21.1 4.4 49 30-86 11-59 (66)
32 PF05600 DUF773: Protein of un 27.9 2.4E+02 0.0052 27.7 7.4 68 22-89 127-201 (507)
33 TIGR00963 secA preprotein tran 26.8 1.5E+02 0.0033 30.6 6.0 46 28-73 550-595 (745)
34 PRK01631 hypothetical protein; 26.6 1.3E+02 0.0028 21.8 4.0 41 23-64 3-43 (76)
35 KOG0943 Predicted ubiquitin-pr 26.2 38 0.00082 36.9 1.6 16 49-64 1443-1458(3015)
36 PF12998 ING: Inhibitor of gro 25.9 1.2E+02 0.0026 22.2 4.0 65 15-83 8-75 (105)
37 PF07361 Cytochrom_B562: Cytoc 25.7 2.8E+02 0.0061 20.9 6.1 41 21-61 52-103 (103)
38 PF03066 Nucleoplasmin: Nucleo 25.7 23 0.0005 28.9 0.0 22 121-142 17-40 (149)
39 KOG3891 Secretory vesicle-asso 25.7 1.3E+02 0.0029 28.1 4.9 85 19-107 175-270 (436)
40 TIGR03714 secA2 accessory Sec 25.6 1.8E+02 0.0039 30.1 6.3 50 28-78 574-623 (762)
41 PF04902 Nab1: Conserved regio 25.3 1.5E+02 0.0032 24.6 4.6 12 3-14 5-16 (166)
42 PF05934 MCLC: Mid-1-related c 25.2 1.3E+02 0.0028 29.5 4.9 40 20-66 58-97 (549)
43 PRK12326 preprotein translocas 24.0 1.9E+02 0.0042 29.9 6.1 46 28-73 576-621 (764)
44 PF07324 DGCR6: DiGeorge syndr 23.4 2.7E+02 0.006 23.8 6.1 19 20-38 57-75 (196)
45 PLN00039 photosystem II reacti 23.1 3.7E+02 0.0079 21.0 6.2 58 103-161 14-75 (111)
46 PRK11546 zraP zinc resistance 22.9 2.5E+02 0.0055 22.8 5.5 14 17-30 41-54 (143)
47 PRK12902 secA preprotein trans 22.8 2.1E+02 0.0046 30.3 6.2 46 28-73 721-766 (939)
48 PRK12904 preprotein translocas 22.8 2.2E+02 0.0047 29.8 6.3 46 28-73 606-651 (830)
49 PF04931 DNA_pol_phi: DNA poly 22.4 50 0.0011 34.0 1.7 7 182-188 612-618 (784)
50 PRK12903 secA preprotein trans 22.4 2.3E+02 0.0049 30.0 6.3 46 28-73 570-615 (925)
51 PF15017 AF1Q: Drug resistance 22.0 1.3E+02 0.0028 22.4 3.4 7 183-189 23-29 (87)
52 PF00284 Cytochrom_B559a: Lume 21.5 47 0.001 21.1 0.8 9 125-133 10-18 (40)
53 PRK13103 secA preprotein trans 21.5 2.4E+02 0.0052 29.9 6.3 46 28-73 624-669 (913)
54 PRK12906 secA preprotein trans 21.5 2.4E+02 0.0052 29.4 6.3 46 28-73 587-632 (796)
55 PF07426 Dynactin_p22: Dynacti 21.4 3.5E+02 0.0075 22.6 6.3 48 14-62 115-162 (174)
56 PRK09343 prefoldin subunit bet 21.3 2.8E+02 0.0061 21.5 5.4 28 18-45 3-30 (121)
57 PRK09200 preprotein translocas 21.1 2.4E+02 0.0053 29.3 6.3 47 28-74 577-623 (790)
58 PF14992 TMCO5: TMCO5 family 21.1 2.4E+02 0.0052 25.5 5.5 12 73-84 209-220 (280)
59 KOG2229 Protein required for a 20.8 47 0.001 32.7 1.0 28 209-236 153-180 (616)
60 CHL00122 secA preprotein trans 20.4 2.6E+02 0.0056 29.5 6.2 47 28-74 663-709 (870)
61 PF14389 Lzipper-MIP1: Leucine 20.3 2.7E+02 0.0059 20.4 4.9 29 17-45 49-77 (88)
No 1
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=1.3e-59 Score=425.52 Aligned_cols=213 Identities=31% Similarity=0.559 Sum_probs=187.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhc----------cCcchhhHHhhh
Q 026031 15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIK----------SIPDFWLNAFLS 84 (244)
Q Consensus 15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~----------~IP~FW~~vl~n 84 (244)
+.+..||+.++.++.+|+.||.++..|+++|++++++|+++|.++++|+|++|++||+ +||+||++||+|
T Consensus 30 ~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~vL~N 109 (337)
T PTZ00007 30 EKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLTAMKN 109 (337)
T ss_pred chhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHHHHHc
Confidence 4577999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred chhhhcccCcchHHhhcCcceeEEEEccCCC-cCeEEEEEeccCCCcccceEEEEEeecC-C---Cc--eeeecceeecc
Q 026031 85 HPVLCDLLNEEDQKIFKYMNSLDVEDFKDVK-SGYCITFIFNENPHFENTKLSKTFTFLD-E---GT--TKITGTVIKWK 157 (244)
Q Consensus 85 ~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~-~~f~l~F~F~~NpyF~N~~L~K~~~~~~-~---g~--~~~~~t~I~Wk 157 (244)
|+.|+.+|++.|++||+||+||+|++..+.. ++|+|+|+|++||||+|++|||+|++.. . |+ ..+++|+|+||
T Consensus 110 h~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~I~WK 189 (337)
T PTZ00007 110 NNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEIDWK 189 (337)
T ss_pred CccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeeeceee
Confidence 9999999999999999999999999886644 8999999999999999999999999853 2 23 35689999999
Q ss_pred CCCCCCcccccccCCCC-----c----ccccccccccccccccccc-----------------ccchHHHHHHHHhcccc
Q 026031 158 EGMGSTNGINHEKNGNK-----R----PLAEESFFSWFAETEQKDF-----------------VELQDEVAEIIKEDLWP 211 (244)
Q Consensus 158 ~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~-----------------~~~~~ei~~~i~dei~p 211 (244)
+|+++|++...+|++++ | +++..|||+||+++..+.. ++.+++||++|+++|||
T Consensus 190 ~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd~IIP 269 (337)
T PTZ00007 190 QGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKLIP 269 (337)
T ss_pred CCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHHhccc
Confidence 99999998766544333 2 3466899999998765431 12567999999999999
Q ss_pred chhhhhccccCCCCCC
Q 026031 212 NPLKYFNNEAGEEESD 227 (244)
Q Consensus 212 ~al~yy~g~~~~e~~~ 227 (244)
+||.||+|++.+++++
T Consensus 270 ~AV~yftGea~d~~~~ 285 (337)
T PTZ00007 270 YAVYWFLGEAIDEDSD 285 (337)
T ss_pred ccHHhhCCCccccccc
Confidence 9999999998776653
No 2
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.4e-58 Score=408.66 Aligned_cols=211 Identities=31% Similarity=0.598 Sum_probs=187.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhh-----------------------
Q 026031 15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII----------------------- 71 (244)
Q Consensus 15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI----------------------- 71 (244)
.++..||+.|+.||.+|+.||.+...++.+|.+++++|++||.++++|||.||.+||
T Consensus 66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~ 145 (358)
T KOG1507|consen 66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL 145 (358)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence 679999999999999999999999999999999999999999999999999999999
Q ss_pred ------------ccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEE
Q 026031 72 ------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTF 139 (244)
Q Consensus 72 ------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~ 139 (244)
+|||+||++||+|++.++.+|+++|++||+||+||++.+..++..||+|.|+|.+||||+|++|||+|
T Consensus 146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY 225 (358)
T KOG1507|consen 146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY 225 (358)
T ss_pred ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence 37999999999999999999999999999999999999998867999999999999999999999999
Q ss_pred eecC----------CCce--eeecceeeccCCCCCCcccccccCCC-----C----cccccccccccccccccccc----
Q 026031 140 TFLD----------EGTT--KITGTVIKWKEGMGSTNGINHEKNGN-----K----RPLAEESFFSWFAETEQKDF---- 194 (244)
Q Consensus 140 ~~~~----------~g~~--~~~~t~I~Wk~gk~~t~~~~~~k~~~-----~----r~~~~~SFF~~F~~~~~~~~---- 194 (244)
++.. +|+. .++||.|+|++||++|++.+.+|+.+ . ++++..||||||+++..++.
T Consensus 226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d~D 305 (358)
T KOG1507|consen 226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEEDLD 305 (358)
T ss_pred eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccccC
Confidence 9862 2333 47999999999999999866554322 2 23577999999999877632
Q ss_pred -------ccchHHHHHHHHhccccchhhhhccccCCCC
Q 026031 195 -------VELQDEVAEIIKEDLWPNPLKYFNNEAGEEE 225 (244)
Q Consensus 195 -------~~~~~ei~~~i~dei~p~al~yy~g~~~~e~ 225 (244)
++.|++||+.|++.|+|.||.||+|++.+++
T Consensus 306 ed~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~ 343 (358)
T KOG1507|consen 306 EDDLEELLELDYEIGETLRDKIIPRAVLWFTGEALEDE 343 (358)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhheeeeecccccccc
Confidence 1356899999999999999999999994444
No 3
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=1.5e-54 Score=365.02 Aligned_cols=181 Identities=31% Similarity=0.611 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeE
Q 026031 40 KVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYC 119 (244)
Q Consensus 40 ~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~ 119 (244)
+|+.++++++++|+++|.++++|+|++|++||++||+||++||+|||.++ +|++.|+++|+||+||+|+...++..||+
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~ 80 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK 80 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence 57889999999999999999999999999999999999999999999999 99999999999999999997545578999
Q ss_pred EEEEecc--CCCcccceEEEEEeecCCCceeeecceeeccCCCCCCcccccccCCCCccccccccccccccccccccccc
Q 026031 120 ITFIFNE--NPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVEL 197 (244)
Q Consensus 120 l~F~F~~--NpyF~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~~F~~~~~~~~~~~ 197 (244)
|+|+|.+ ||||+|++|||+|++..++..++++|+|+||+|+++|++..+++....++.+..|||+||+++..+ .
T Consensus 81 i~F~F~~~~N~yF~n~~LtK~y~~~~~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~----~ 156 (185)
T PTZ00008 81 ITLIFDEKAKEFMEPLVLVKHVIFKNNQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ----D 156 (185)
T ss_pred EEEEECCCCCCCcCCCEEEEEEEEecCCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----C
Confidence 9999965 899999999999999887778889999999999999988765433233456779999999987543 5
Q ss_pred hHHHHHHHHhccccchhhhhccccCCCC
Q 026031 198 QDEVAEIIKEDLWPNPLKYFNNEAGEEE 225 (244)
Q Consensus 198 ~~ei~~~i~dei~p~al~yy~g~~~~e~ 225 (244)
+++||++|+++|||+||+||+|++.+++
T Consensus 157 ~~eIg~~i~e~i~P~av~yy~ge~~~~~ 184 (185)
T PTZ00008 157 RPDVGEIIRREIWHAPLLYYLDTVSIDD 184 (185)
T ss_pred cHHHHHHHHHhhccchHHhhCCcccccc
Confidence 7899999999999999999999877654
No 4
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=3e-53 Score=372.30 Aligned_cols=197 Identities=40% Similarity=0.734 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc-------------------CcchhhHHhhhc
Q 026031 25 VLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS-------------------IPDFWLNAFLSH 85 (244)
Q Consensus 25 ~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~-------------------IP~FW~~vl~n~ 85 (244)
+++|.+|+.||.++..++.++.+++++|+++|.++++|+|++|++||.+ ||+||++||+||
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~ 80 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH 80 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence 5789999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEeecCCCc------eeeecceeeccCC
Q 026031 86 PVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT------TKITGTVIKWKEG 159 (244)
Q Consensus 86 ~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~g~------~~~~~t~I~Wk~g 159 (244)
+.++.+|++.|.+||+||+||+|++..++.++|+|+|+|++||||+|++|+|+|++...+. .++++|+|+||+|
T Consensus 81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~~~~~~~~t~I~Wk~g 160 (244)
T PF00956_consen 81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDPDELKSESTPIDWKPG 160 (244)
T ss_dssp HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT-EEEEEE---EBSTT
T ss_pred chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCCCcceeeeecccccCC
Confidence 9999999999999999999999999987789999999999999999999999999987665 7899999999999
Q ss_pred CCCCcccccccCCCC---------cccccccccccccccccccc-------------ccchHHHHHHHHhccccchhhhh
Q 026031 160 MGSTNGINHEKNGNK---------RPLAEESFFSWFAETEQKDF-------------VELQDEVAEIIKEDLWPNPLKYF 217 (244)
Q Consensus 160 k~~t~~~~~~k~~~~---------r~~~~~SFF~~F~~~~~~~~-------------~~~~~ei~~~i~dei~p~al~yy 217 (244)
+++|++...++++.+ +....+|||+||++...+++ +..+++||.+|+++|||+||.||
T Consensus 161 kd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~yy 240 (244)
T PF00956_consen 161 KDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKYY 240 (244)
T ss_dssp TCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred CCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHHh
Confidence 999998765543222 22456899999996543310 12578999999999999999999
Q ss_pred cccc
Q 026031 218 NNEA 221 (244)
Q Consensus 218 ~g~~ 221 (244)
+|+|
T Consensus 241 ~gea 244 (244)
T PF00956_consen 241 TGEA 244 (244)
T ss_dssp HTCT
T ss_pred CCCC
Confidence 9976
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-33 Score=249.49 Aligned_cols=204 Identities=43% Similarity=0.797 Sum_probs=184.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCc
Q 026031 15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNE 94 (244)
Q Consensus 15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~ 94 (244)
+.+...+..++.++..|++||.+++.++++..+++++++++|...++|+|++|+.||+.||+||.+++.|||.++.+|..
T Consensus 21 ~~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~ 100 (260)
T KOG1508|consen 21 EHLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPE 100 (260)
T ss_pred cccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEeecCCCceeeecceeeccCCCCCCcccccccCCCC
Q 026031 95 EDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNK 174 (244)
Q Consensus 95 ~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~ 174 (244)
.|.+++.||..+.|+.+.+..+||++.|+|.+||||+|.+++|+|++...|..++.+|+|.|+.|+++.+.......+++
T Consensus 101 ~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k 180 (260)
T KOG1508|consen 101 EDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESGKPSSESTPISWKEGKPLPNPVKRGELKNK 180 (260)
T ss_pred hhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeecccCcccccccccccCCCCCcccccccccccc
Confidence 99999999999999999888999999999999999999999999999998888899999999999998766542222233
Q ss_pred ccccccccccccccccccccccchHHHHHHHHhccccchhhhhccccC
Q 026031 175 RPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEAG 222 (244)
Q Consensus 175 r~~~~~SFF~~F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~g~~~ 222 (244)
+.....|||.||+.+.+++ ..+|+++|++.+||++++||+-.+.
T Consensus 181 ~~~~~~s~f~wf~~~~~~~----~d~i~ei~~~~~~~~~~~~~~~~~~ 224 (260)
T KOG1508|consen 181 NGDGPKSFFEWFSDTSLKE----FDEILEIIKDELWPNPLQYYLEPDG 224 (260)
T ss_pred cCcccccHHHHHHhccCCC----ccchhhhhhcccccchhhhhccccc
Confidence 4455689999999998764 3489999999999999999987643
No 6
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=95.84 E-value=0.032 Score=36.85 Aligned_cols=36 Identities=25% Similarity=0.570 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026031 31 LQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNK 66 (244)
Q Consensus 31 L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~k 66 (244)
+..||..+..|..++++|+-+|++.|..+++|+.+.
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 567899999999999999999999999999999864
No 7
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=91.23 E-value=0.77 Score=37.28 Aligned_cols=56 Identities=21% Similarity=0.391 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcch
Q 026031 22 TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDF 77 (244)
Q Consensus 22 ~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~F 77 (244)
.++-.++..+..+|.++..++..+..++-++...|.....|+-.+...+-..|-.|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999998887776665544
No 8
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=85.88 E-value=1.9 Score=34.85 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchh
Q 026031 20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFW 78 (244)
Q Consensus 20 ~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW 78 (244)
--.+|...|..|-+||.+...|+.++..++.+++..|..+..|+-+.-..+-++|..|.
T Consensus 16 ~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC 74 (170)
T COG4396 16 DKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC 74 (170)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999988777777776653
No 9
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=77.15 E-value=0.038 Score=49.27 Aligned_cols=132 Identities=13% Similarity=0.016 Sum_probs=84.8
Q ss_pred hhHHHhHhhhccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEee
Q 026031 62 PVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTF 141 (244)
Q Consensus 62 Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~ 141 (244)
+...+|...+..+++||..|-.....+. -..+..+|+ ...+...|..|+|+++..|+|+|.-
T Consensus 21 ~~l~~~~~~~~~~~~~l~~i~~e~~~~~---~~a~~~~l~---------------l~~~~~~~r~p~~~~r~~ii~~i~~ 82 (260)
T KOG1508|consen 21 EHLSRRGREIEEALETLENIQHELDRMN---AKAEVEVLK---------------LEQKFNRFRRPVYEKRRELIKEIPN 82 (260)
T ss_pred cccccchhHHHhhhHHHHHHHHHhhhhh---hhhHHHHHH---------------HHHHHHhhhCchhhhhhHHHhhccc
Confidence 8889999999999999987653332222 122222221 2223445688999999999999752
Q ss_pred cCCCceeeecceeeccCCCCCCcccccccCCCCccccccccccccccccccccccchHHHHHHHHhccccchhhhhcccc
Q 026031 142 LDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEA 221 (244)
Q Consensus 142 ~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~~F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~g~~ 221 (244)
.-.-.....++.+.|-.+.+....... .......|+++++..... ..+++..++.+.+|-+.++|+....
T Consensus 83 fw~~~~~~hp~~~~~i~~~~~e~~~~l------~~~~v~e~~~~~sg~~~~----~~f~~ney~~~~~~~ke~~~~~~~~ 152 (260)
T KOG1508|consen 83 FWVTAFLNHPTLSEWIPEEDEEALHYL------HNLEVEELGDIKSGYRIK----FSFEINEYFTNDLLVKEFQYKESGK 152 (260)
T ss_pred ceeEEEecCCcHhhhhhhhhhhhhccc------hHHHHHHhccccccCeee----eeeccchhcccchhceeeeeecccC
Confidence 111113458889999887765432100 012335577777766532 4567778888999999999998754
No 10
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=64.74 E-value=24 Score=30.08 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
-.++...|+.++..+-...+.+++...--+.+++-+|..|+.|+.+
T Consensus 8 ~~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~ 53 (214)
T PF07516_consen 8 SKSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG 53 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466778999999999999999999999999999999999999976
No 11
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=64.07 E-value=3.8 Score=36.20 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=25.5
Q ss_pred ccccccccccccccccccchHHHHHH-HHhccccchhhh--hccccCCCCCCCCCCCCCCCC
Q 026031 179 EESFFSWFAETEQKDFVELQDEVAEI-IKEDLWPNPLKY--FNNEAGEEESDGDDEENGENG 237 (244)
Q Consensus 179 ~~SFF~~F~~~~~~~~~~~~~ei~~~-i~dei~p~al~y--y~g~~~~e~~~~~~~~~~~~~ 237 (244)
..|||.||--... ||-. -+.-||-+-+.| ++|...=.|.|+|+|+|-||.
T Consensus 9 G~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~kL~iYDaDGDGDFDveDA 61 (243)
T PF05279_consen 9 GSSFFTWFLVLAL---------LGVWSSVAVVMFDLVDYKSVLGKLGIYDADGDGDFDVEDA 61 (243)
T ss_pred CCchHHHHHHHHH---------HHHHHhhHhhheehhhHHHHhhhheeeeccCCCccccccc
Confidence 3589999953321 1100 011234444444 244445555677777776664
No 12
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=58.76 E-value=6.6 Score=35.09 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=5.0
Q ss_pred CCcCeEEEE
Q 026031 114 VKSGYCITF 122 (244)
Q Consensus 114 ~~~~f~l~F 122 (244)
+.+.|+-.|
T Consensus 139 GGrif~Csf 147 (314)
T PF06524_consen 139 GGRIFKCSF 147 (314)
T ss_pred CCeEEEeec
Confidence 455666554
No 13
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=58.74 E-value=23 Score=32.85 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNK 66 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~k 66 (244)
.-.|..||..+-.+.-.+.+++.+|+++|..+++|+|..
T Consensus 453 ~~~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIlda 491 (502)
T KOG0574|consen 453 NITLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDA 491 (502)
T ss_pred hccHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHH
Confidence 446788999999999999999999999999999999964
No 14
>PRK14082 hypothetical protein; Provisional
Probab=43.65 E-value=28 Score=24.42 Aligned_cols=9 Identities=33% Similarity=1.029 Sum_probs=6.9
Q ss_pred ccCcchhhH
Q 026031 72 KSIPDFWLN 80 (244)
Q Consensus 72 ~~IP~FW~~ 80 (244)
..+||||--
T Consensus 55 ~e~PGF~ef 63 (65)
T PRK14082 55 QEVPGFWEF 63 (65)
T ss_pred ccCCcHHHh
Confidence 468999953
No 15
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=42.20 E-value=15 Score=37.66 Aligned_cols=29 Identities=28% Similarity=0.639 Sum_probs=15.2
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 026031 214 LKYFNNEAGEEESDGDDEENGENGDGDED 242 (244)
Q Consensus 214 l~yy~g~~~~e~~~~~~~~~~~~~~~~~~ 242 (244)
+.+|.+..+++.++++|.+.||+.|+|||
T Consensus 882 ~~~f~~~~~~d~dE~e~~~~dEd~d~~ed 910 (911)
T PF05086_consen 882 ISQFQSNGDEDTDEDEDQDEDEDEDEDED 910 (911)
T ss_pred HHHHHhcCCcccccccccccccccccccc
Confidence 44554433344444444466666666665
No 16
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.67 E-value=14 Score=38.73 Aligned_cols=6 Identities=17% Similarity=0.058 Sum_probs=2.3
Q ss_pred ccceEE
Q 026031 131 ENTKLS 136 (244)
Q Consensus 131 ~N~~L~ 136 (244)
.|.+||
T Consensus 1247 ndGvLW 1252 (1516)
T KOG1832|consen 1247 NDGVLW 1252 (1516)
T ss_pred eCceee
Confidence 333333
No 17
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=39.93 E-value=8.7 Score=29.17 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=22.9
Q ss_pred HHhhhchhhhcccCcchHH-h-hcCcceeEEEEccCCCcCeEEEEEe--ccCCCcc
Q 026031 80 NAFLSHPVLCDLLNEEDQK-I-FKYMNSLDVEDFKDVKSGYCITFIF--NENPHFE 131 (244)
Q Consensus 80 ~vl~n~~~l~~~i~~~D~~-i-L~~L~dI~Ve~~~d~~~~f~l~F~F--~~NpyF~ 131 (244)
++|..||.-.-+-.+..-. | -.|++.|.|.... ..-+++.+.. .+||||+
T Consensus 18 k~li~HPMetGl~~d~tg~~iPa~~I~~v~v~~ng--~~v~~~~~~~siS~NP~l~ 71 (100)
T PF08770_consen 18 KALISHPMETGLRKDQTGKYIPAHFIEEVEVTYNG--KPVFRADWGPSISENPYLR 71 (100)
T ss_dssp EEEE----B-S-BB-TTS-BB--B-EEEEEEEETT--EEEEEEEE-TTB-SS-EEE
T ss_pred EEEEECCCccccccCCCCCCCChHheEEEEEEECC--EEEEEEEeCCcccCCCcEE
Confidence 4566777655443222211 2 2699999999643 5556666665 5799985
No 18
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=39.87 E-value=17 Score=37.43 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026031 26 LSIEKLQEVQDELEKVNEEASDKVL 50 (244)
Q Consensus 26 ~~i~~L~~lq~e~~~le~~~~~e~~ 50 (244)
..+..++.++.-+..+..+...++.
T Consensus 341 d~~t~~k~i~~il~~~~~~~l~~~~ 365 (784)
T PF04931_consen 341 DQITKTKTIEQILLSLDVDGLKKFS 365 (784)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHH
Confidence 4455555555555555544444433
No 19
>PRK02539 hypothetical protein; Provisional
Probab=39.85 E-value=55 Score=24.27 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026031 21 DTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVY 64 (244)
Q Consensus 21 ~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 64 (244)
+.++..+|..|...++. ..|-.+-..|..+|++.|.+.++--+
T Consensus 2 ~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 2 DPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999998887 45555556677788888887666544
No 20
>PRK01546 hypothetical protein; Provisional
Probab=38.91 E-value=55 Score=23.92 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026031 20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVY 64 (244)
Q Consensus 20 ~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 64 (244)
+++++..+|..|...+++ ..|-.+-..|..+|++.|.+.++--+
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 45 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQNM 45 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999998886 44555555677778888877665544
No 21
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.81 E-value=24 Score=28.32 Aligned_cols=6 Identities=67% Similarity=0.717 Sum_probs=2.5
Q ss_pred cCCCCC
Q 026031 221 AGEEES 226 (244)
Q Consensus 221 ~~~e~~ 226 (244)
.+.+-|
T Consensus 110 LG~eVS 115 (136)
T PF04871_consen 110 LGEEVS 115 (136)
T ss_pred cCCCcc
Confidence 444443
No 22
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.58 E-value=2.6e+02 Score=25.47 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=14.3
Q ss_pred ccCcchHHhhcCcceeEEEEc
Q 026031 91 LLNEEDQKIFKYMNSLDVEDF 111 (244)
Q Consensus 91 ~i~~~D~~iL~~L~dI~Ve~~ 111 (244)
-+.+.|..|=+|..||.+...
T Consensus 139 sL~ekDkGiQKYFvDINiQN~ 159 (305)
T PF15290_consen 139 SLAEKDKGIQKYFVDINIQNK 159 (305)
T ss_pred hhchhhhhHHHHHhhhhhhHh
Confidence 344667778888888777643
No 23
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.20 E-value=1.6e+02 Score=21.79 Aligned_cols=55 Identities=15% Similarity=0.392 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcc
Q 026031 22 TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPD 76 (244)
Q Consensus 22 ~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~ 76 (244)
.........+..+...+..++.+.......+...|..++.-+-+++..++..|..
T Consensus 14 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 14 KKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777778888888888888899999999999888888888865544
No 24
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=36.36 E-value=1.7e+02 Score=22.51 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=44.0
Q ss_pred ccCcchHHhhcCcceeEEEEccCCCcCeEEEEEec-cCCCcccceEEEEEeecCCCceeeecceeeccCCCC
Q 026031 91 LLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFN-ENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMG 161 (244)
Q Consensus 91 ~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~-~NpyF~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~ 161 (244)
+|...|++ |.+|++....+ ...=+..|.|. |+. + ...++-=|-.+.+|..+...+..+.-.|+.
T Consensus 6 F~~Gi~E~----~p~VrLtRsrd-g~~g~a~f~F~~~~~-~-~~~itgm~liDeEGei~tr~v~~KFvnGkp 70 (104)
T PRK13611 6 FSPGIPEV----PTQVRLLKSKT-GKRGSAIFRFEDLKS-D-TQNILGMRMIDEEGELTTRNIKAKFLNGEF 70 (104)
T ss_pred EecCCCCC----CCceEEEEccC-CCccEEEEEEcCCcc-c-ccceeeEEEEccCCcEEEEecceEEECCCc
Confidence 44455552 78999998877 45567899994 566 3 356677555677788776666666777765
No 25
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=32.87 E-value=48 Score=27.19 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhc--------cCcchhhHHhhhchhhhccc
Q 026031 21 DTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIK--------SIPDFWLNAFLSHPVLCDLL 92 (244)
Q Consensus 21 ~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~--------~IP~FW~~vl~n~~~l~~~i 92 (244)
.|.+.+++..|+. |-=+.+++++.. .--+|...|.+.+..+..+|.+|.. ++|+| |-|-|-.|+..|
T Consensus 56 ~P~L~kaaSrLEs-~gymkem~erl~-~d~eL~~~~~raHe~~lkkR~~i~~~~t~~~~gGm~D~---vkClhvlia~~l 130 (167)
T COG1507 56 HPVLTKAASRLES-TGYMKEMTERLG-QDEELRAFYRRAHESYLKKRDAIEPLGTTVSGGGMPDR---VKCLHVLIAHSL 130 (167)
T ss_pred ChHHHHHHHHHHH-hhHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhhcccCCeecCCCcchH---HHHHHHHHHHHh
Confidence 3556666666542 111222222221 1246788999999999999999984 68888 334455555444
No 26
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=32.62 E-value=1.5e+02 Score=20.77 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026031 23 ELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVY 64 (244)
Q Consensus 23 ~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 64 (244)
++..+|..|...++... |..+-..+..+|++.|...++--+
T Consensus 2 e~i~RINeLa~K~K~~g-LT~eE~~Eq~~LR~eYl~~fR~~~ 42 (65)
T PF05979_consen 2 EKIDRINELAKKSKEEG-LTEEEKAEQAELRQEYLQNFRGNF 42 (65)
T ss_dssp HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999998888544 444445667778888877666544
No 27
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.98 E-value=95 Score=22.68 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026031 17 ADGIDTELVLSIEKLQEVQDELEKVNEEA 45 (244)
Q Consensus 17 ~~~~~~~v~~~i~~L~~lq~e~~~le~~~ 45 (244)
...|...|+++|+.+.-||.+++.+..+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999997663
No 28
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=31.51 E-value=2.5e+02 Score=21.92 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcch--hhHHhhh
Q 026031 19 GIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDF--WLNAFLS 84 (244)
Q Consensus 19 ~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~F--W~~vl~n 84 (244)
.+...+...+..+-..|+.|+....++.+....+.+.-.+..+ ++..=+.-++.|-+| |..++-+
T Consensus 33 ~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~-~~~~~~~~LKEiGDveNWa~~iE~ 99 (121)
T PF06320_consen 33 ALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLK-LVDSFNDALKEIGDVENWAEMIER 99 (121)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHH
Confidence 3455567777777788888888777777777777666555544 555666667788887 8887754
No 29
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=31.51 E-value=16 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=12.5
Q ss_pred ecceeeccCCCCCCc
Q 026031 150 TGTVIKWKEGMGSTN 164 (244)
Q Consensus 150 ~~t~I~Wk~gk~~t~ 164 (244)
..||.+|++|.++..
T Consensus 10 v~tPanW~pGd~~iv 24 (40)
T PF10417_consen 10 VATPANWKPGDDVIV 24 (40)
T ss_dssp SBBCTTTCTTSGEBE
T ss_pred cccCcCCCCCCCeEc
Confidence 578999999998653
No 30
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.31 E-value=1.2e+02 Score=21.73 Aligned_cols=63 Identities=19% Similarity=0.376 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHh
Q 026031 18 DGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAF 82 (244)
Q Consensus 18 ~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl 82 (244)
..|..+++++++.+.-||.+++.|.++... +.-+..-....+.-.+++++-++.--.-|-.-+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~--l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNS--LSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678999999999999999988765431 111222222333444555555555555564433
No 31
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.46 E-value=1.3e+02 Score=21.11 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhch
Q 026031 30 KLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHP 86 (244)
Q Consensus 30 ~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~ 86 (244)
.|++|...+...+.....+++=.-++|.....|+.+- -+||..-|.++.
T Consensus 11 ~LQeID~N~s~~~~iit~~IlP~v~rY~~~s~~i~~~--------~~fwk~fFe~sA 59 (66)
T PF08655_consen 11 LLQEIDSNFSRCHRIITDKILPAVERYGESSEKIWDS--------AKFWKQFFEQSA 59 (66)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH--------HhHHHHHHHhhh
Confidence 3444444444444444333443444444444444322 589998887665
No 32
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=27.89 E-value=2.4e+02 Score=27.68 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HhHh---hhccCcchhhHHhhhchhhh
Q 026031 22 TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYN----KRNE---IIKSIPDFWLNAFLSHPVLC 89 (244)
Q Consensus 22 ~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~----kR~e---iI~~IP~FW~~vl~n~~~l~ 89 (244)
|.+++.+.++.+.+.+..+-+.++.+-....+.+|.+.++-+== -|.+ +++.+|.++..+......+.
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i~~l~ 201 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAISDLQ 201 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44677788888888888888888888888889999888765421 2344 44678999888776554443
No 33
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=26.78 E-value=1.5e+02 Score=30.57 Aligned_cols=46 Identities=26% Similarity=0.436 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 550 ~~~~~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~ 595 (745)
T TIGR00963 550 TRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES 595 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc
Confidence 4566778999999999999999999999999999999999999965
No 34
>PRK01631 hypothetical protein; Provisional
Probab=26.61 E-value=1.3e+02 Score=21.80 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026031 23 ELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVY 64 (244)
Q Consensus 23 ~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 64 (244)
++..+|..|...+++ ..|-.+-..|..+|++.|.+.++--+
T Consensus 3 ~ii~RINeLakK~K~-~gLT~eE~~Eq~~LR~eYl~~fR~~~ 43 (76)
T PRK01631 3 NILFRINELSKKEKA-TGLTVDEKQEQQMLRQNYTQTFRGSL 43 (76)
T ss_pred hHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999988886 44555556677788888887755544
No 35
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.24 E-value=38 Score=36.93 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhhH
Q 026031 49 VLEIEQKYNEIRRPVY 64 (244)
Q Consensus 49 ~~~le~k~~~~~~Pl~ 64 (244)
..+|+.+|.+.+..+|
T Consensus 1443 ~falenkiLkd~Sslf 1458 (3015)
T KOG0943|consen 1443 LFALENKILKDQSSLF 1458 (3015)
T ss_pred hHHHHHHHHhhhhhhh
Confidence 3456666666665554
No 36
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=25.88 E-value=1.2e+02 Score=22.22 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=40.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHhHhhhccCcchhhHHhh
Q 026031 15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRP---VYNKRNEIIKSIPDFWLNAFL 83 (244)
Q Consensus 15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~P---l~~kR~eiI~~IP~FW~~vl~ 83 (244)
+.+..||.+++..+..+..+..+...+-.+. .+.-.+|.+.... --.++...++.|-.=+..++.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 75 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEEL----DQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALE 75 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999887777755554333 3334444443322 112666677777666666554
No 37
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=25.71 E-value=2.8e+02 Score=20.89 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhh
Q 026031 21 DTELVLSIEKLQEVQDELEKVNEEA-----------SDKVLEIEQKYNEIRR 61 (244)
Q Consensus 21 ~~~v~~~i~~L~~lq~e~~~le~~~-----------~~e~~~le~k~~~~~~ 61 (244)
++++..-...|..|+.+|+.++... .+++..++.+|++.++
T Consensus 52 ~~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 52 SAEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 4455566777777777777776543 3466677777777653
No 38
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=25.68 E-value=23 Score=28.89 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=9.3
Q ss_pred EEEecc--CCCcccceEEEEEeec
Q 026031 121 TFIFNE--NPHFENTKLSKTFTFL 142 (244)
Q Consensus 121 ~F~F~~--NpyF~N~~L~K~~~~~ 142 (244)
.++|++ |.--...-.-+...++
T Consensus 17 ~~~f~~~~~d~~~h~L~L~~v~Lg 40 (149)
T PF03066_consen 17 DYTFKVDDNDENEHQLSLRQVCLG 40 (149)
T ss_dssp EEEE-TTSSSSSCEEEEEEEEEE-
T ss_pred eEEEeCCCCCCcccEEEEEEeecC
Confidence 355655 4433333444455553
No 39
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.66 E-value=1.3e+02 Score=28.15 Aligned_cols=85 Identities=16% Similarity=0.293 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhh--------ccCcchhhHHhhhchhhhc
Q 026031 19 GIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII--------KSIPDFWLNAFLSHPVLCD 90 (244)
Q Consensus 19 ~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI--------~~IP~FW~~vl~n~~~l~~ 90 (244)
.|+|.+-..+++....|.......+-|.+=-+.+-+|-. -+-+-|.-++ ..+-+||..+-.....|+.
T Consensus 175 ELDPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QKVD----LL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~e 250 (436)
T KOG3891|consen 175 ELDPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQKVD----LLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIHE 250 (436)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHh----HhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888777666555543333333322 2333444333 3478999988777666664
Q ss_pred cc---CcchHHhhcCcceeE
Q 026031 91 LL---NEEDQKIFKYMNSLD 107 (244)
Q Consensus 91 ~i---~~~D~~iL~~L~dI~ 107 (244)
-+ .+.|..+|++|.+=.
T Consensus 251 a~~~y~~YdF~~Lk~L~~~~ 270 (436)
T KOG3891|consen 251 ACIGYNPYDFEILKHLQDGT 270 (436)
T ss_pred HhcCCCccchHHHHHhccCC
Confidence 43 589999999998643
No 40
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=25.57 E-value=1.8e+02 Score=30.12 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchh
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFW 78 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW 78 (244)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.|+.+ .+|+
T Consensus 574 ~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~-~~~~ 623 (762)
T TIGR03714 574 RKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG-SDFL 623 (762)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchH
Confidence 4566778999999999999999999999999999999999999976 3443
No 41
>PF04902 Nab1: Conserved region in Nab1; InterPro: IPR006986 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This C-terminal region is found only in the Nab1 subfamily.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.32 E-value=1.5e+02 Score=24.55 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=10.6
Q ss_pred CCcccccccccc
Q 026031 3 ADRGKKSKVAED 14 (244)
Q Consensus 3 ~~~~~~~~~~~~ 14 (244)
.|+|||-|..++
T Consensus 5 ElSPKRIKtEdg 16 (166)
T PF04902_consen 5 ELSPKRIKTEDG 16 (166)
T ss_pred cCCccceecccC
Confidence 489999999887
No 42
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=25.21 E-value=1.3e+02 Score=29.54 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026031 20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNK 66 (244)
Q Consensus 20 ~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~k 66 (244)
-+.++.....+|..|+.++++.+.+. ..+|..+..|+|.|
T Consensus 58 ~~~e~~ec~~kL~~l~~~i~ecekk~-------~~~~~sqs~pvfkR 97 (549)
T PF05934_consen 58 CAEELSECYKKLDSLQKKIDECEKKK-------REDQESQSNPVFKR 97 (549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-------hhhcccccHHHHHH
Confidence 46667778888888888888777554 44577778888854
No 43
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=24.01 E-value=1.9e+02 Score=29.86 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
-..+...|+..+..+-...+.+++...--+.+++-+|++|+.|+.+
T Consensus 576 ~~~i~~aQk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~ 621 (764)
T PRK12326 576 ADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT 621 (764)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556667999999999999999999999999999999999999965
No 44
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=23.37 E-value=2.7e+02 Score=23.83 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026031 20 IDTELVLSIEKLQEVQDEL 38 (244)
Q Consensus 20 ~~~~v~~~i~~L~~lq~e~ 38 (244)
+.+.|...|..|.++|.-.
T Consensus 57 ldgtIFeiV~~L~eiQ~~~ 75 (196)
T PF07324_consen 57 LDGTIFEIVKGLLEIQHLT 75 (196)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4556778888888887644
No 45
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=23.08 E-value=3.7e+02 Score=20.95 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=38.4
Q ss_pred cceeEEEEccCCCcCeEEEEEec-cCCC---cccceEEEEEeecCCCceeeecceeeccCCCC
Q 026031 103 MNSLDVEDFKDVKSGYCITFIFN-ENPH---FENTKLSKTFTFLDEGTTKITGTVIKWKEGMG 161 (244)
Q Consensus 103 L~dI~Ve~~~d~~~~f~l~F~F~-~Npy---F~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~ 161 (244)
|.+|++....+ ...=+.+|.|. |+-+ -....++-=|-++.+|..+...+..+.-.|+.
T Consensus 14 vp~VrLtRsrd-g~~g~a~f~F~~p~~l~~~~~~~~itgm~liDeEGei~tr~v~~KFvnGkp 75 (111)
T PLN00039 14 VPDVRLTRSRD-GTNGTAIFVFDQPSVFDSSGELGDITGLYMIDEEGVLQTVDVSAKFVNGKP 75 (111)
T ss_pred CCceEEEEccC-CCccEEEEEECCchhhccccccCceeeEEEEccCccEEEEecceEEECCCc
Confidence 67899998877 45567899995 4432 23355676555677788766665555556655
No 46
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.87 E-value=2.5e+02 Score=22.81 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=7.9
Q ss_pred CCCCCHHHHHHHHH
Q 026031 17 ADGIDTELVLSIEK 30 (244)
Q Consensus 17 ~~~~~~~v~~~i~~ 30 (244)
...|+++.++.+.+
T Consensus 41 ~~~LT~EQQa~~q~ 54 (143)
T PRK11546 41 AAPLTTEQQAAWQK 54 (143)
T ss_pred cccCCHHHHHHHHH
Confidence 44577777444433
No 47
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=22.81 E-value=2.1e+02 Score=30.29 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
-..|...|+.++..+-...+.+++...--+.+++-+|..|+.++.+
T Consensus 721 ~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~ 766 (939)
T PRK12902 721 TRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG 766 (939)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566778999999999999999999999999999999999999965
No 48
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=22.80 E-value=2.2e+02 Score=29.83 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.|+.+
T Consensus 606 ~~~i~~aQ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~ 651 (830)
T PRK12904 606 TRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG 651 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556668999999999999999999999999999999999999965
No 49
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=22.38 E-value=50 Score=33.96 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=3.0
Q ss_pred ccccccc
Q 026031 182 FFSWFAE 188 (244)
Q Consensus 182 FF~~F~~ 188 (244)
-|.-|++
T Consensus 612 vf~~~~~ 618 (784)
T PF04931_consen 612 VFEAFCP 618 (784)
T ss_pred HHHHHHh
Confidence 3444443
No 50
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=22.37 E-value=2.3e+02 Score=29.98 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
-.++...|+.++..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 570 ~~~ie~AQkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 615 (925)
T PRK12903 570 SKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA 615 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566678999999998888999998888899999999999999965
No 51
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=21.98 E-value=1.3e+02 Score=22.40 Aligned_cols=7 Identities=14% Similarity=0.596 Sum_probs=3.7
Q ss_pred ccccccc
Q 026031 183 FSWFAET 189 (244)
Q Consensus 183 F~~F~~~ 189 (244)
|.|...+
T Consensus 23 F~fWR~P 29 (87)
T PF15017_consen 23 FLFWRNP 29 (87)
T ss_pred eeeccCC
Confidence 5555544
No 52
>PF00284 Cytochrom_B559a: Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit family.; InterPro: IPR013082 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The alpha subunit (PsbE) of cytochrome b559, forms a haem-binding heterodimer with the beta subunit (PsbF) (IPR006241 from INTERPRO) within the reaction centre core of PSII. Both PsbE and PsbF are essential components for PSII assembly, and are probably involved in secondary electron transport mechanisms that help to protect PSII from photo-damage []. This domain occurs in the lumenal region of the alpha subunit. It is usually found in conjuction with an N-terminal domain (IPR013081 from INTERPRO).; GO: 0046872 metal ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 1W5C_K 1S5L_e 3BZ2_E 3PRQ_E 2AXT_E 4FBY_R 3PRR_E 3BZ1_E 3KZI_E 3A0H_E ....
Probab=21.51 E-value=47 Score=21.05 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=6.2
Q ss_pred ccCCCcccc
Q 026031 125 NENPHFENT 133 (244)
Q Consensus 125 ~~NpyF~N~ 133 (244)
+||.||++.
T Consensus 10 RPneYft~~ 18 (40)
T PF00284_consen 10 RPNEYFTES 18 (40)
T ss_dssp -TTCSS-SS
T ss_pred Ccccccccc
Confidence 589999886
No 53
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=21.47 E-value=2.4e+02 Score=29.85 Aligned_cols=46 Identities=24% Similarity=0.451 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
...+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 624 ~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~ 669 (913)
T PRK13103 624 TNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA 669 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566668999999999999999999999999999999999999975
No 54
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=21.45 E-value=2.4e+02 Score=29.38 Aligned_cols=46 Identities=20% Similarity=0.409 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
...+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 587 ~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~ 632 (796)
T PRK12906 587 TRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINE 632 (796)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456668999999999999999999999999999999999999976
No 55
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=21.42 E-value=3.5e+02 Score=22.57 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=35.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026031 14 DENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRP 62 (244)
Q Consensus 14 ~~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~P 62 (244)
++.+..+|... ..+..|..+|.+....-.+..+++.++-..|++...-
T Consensus 115 se~i~~vp~~~-~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~ 162 (174)
T PF07426_consen 115 SESIRNVPELC-DKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIILL 162 (174)
T ss_pred cHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554443 7788888888888888888888888888888876543
No 56
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.31 E-value=2.8e+02 Score=21.51 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026031 18 DGIDTELVLSIEKLQEVQDELEKVNEEA 45 (244)
Q Consensus 18 ~~~~~~v~~~i~~L~~lq~e~~~le~~~ 45 (244)
..+|++++..+..+..+|.++..+..+.
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~ 30 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQK 30 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999887554
No 57
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=21.12 E-value=2.4e+02 Score=29.30 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccC
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSI 74 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~I 74 (244)
...|...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+-
T Consensus 577 ~~~~~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~ 623 (790)
T PRK09200 577 HKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEED 623 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55666789999999999999999999999999999999999999764
No 58
>PF14992 TMCO5: TMCO5 family
Probab=21.12 E-value=2.4e+02 Score=25.54 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.4
Q ss_pred cCcchhhHHhhh
Q 026031 73 SIPDFWLNAFLS 84 (244)
Q Consensus 73 ~IP~FW~~vl~n 84 (244)
+-|-||.++|+-
T Consensus 209 ~~~~~wkr~lr~ 220 (280)
T PF14992_consen 209 NSPTFWKRALRL 220 (280)
T ss_pred hhhHHHHHHHHH
Confidence 358899999875
No 59
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.78 E-value=47 Score=32.68 Aligned_cols=28 Identities=29% Similarity=0.556 Sum_probs=15.6
Q ss_pred cccchhhhhccccCCCCCCCCCCCCCCC
Q 026031 209 LWPNPLKYFNNEAGEEESDGDDEENGEN 236 (244)
Q Consensus 209 i~p~al~yy~g~~~~e~~~~~~~~~~~~ 236 (244)
|.-.+|.||+|-...+++++.|.++++|
T Consensus 153 i~vs~l~FfL~~D~~dee~dsd~~~d~d 180 (616)
T KOG2229|consen 153 ILVSGLRFFLGADNEDEEDDSDSESDED 180 (616)
T ss_pred HHHhhhHHhccCCccccccccccccccc
Confidence 3446789999865544443444444443
No 60
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=20.36 E-value=2.6e+02 Score=29.47 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccC
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSI 74 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~I 74 (244)
...+...|+..+..+-...+.+++...--+.+++-+|..|+.++.+-
T Consensus 663 ~~~i~~aQ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~~ 709 (870)
T CHL00122 663 SKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQ 709 (870)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44667789999999999999999999999999999999999999763
No 61
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=20.33 E-value=2.7e+02 Score=20.42 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026031 17 ADGIDTELVLSIEKLQEVQDELEKVNEEA 45 (244)
Q Consensus 17 ~~~~~~~v~~~i~~L~~lq~e~~~le~~~ 45 (244)
...+|+.++.-+..+..+..++..++.+.
T Consensus 49 ~~~lp~~~keLL~EIA~lE~eV~~LE~~v 77 (88)
T PF14389_consen 49 PSSLPKKAKELLEEIALLEAEVAKLEQKV 77 (88)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999988888888777443
Done!