Query 026031
Match_columns 244
No_of_seqs 127 out of 602
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e50_A Protein SET; histone ch 100.0 8.4E-62 2.9E-66 419.8 16.0 215 1-219 1-222 (225)
2 2ayu_A Nucleosome assembly pro 100.0 7.4E-60 2.5E-64 437.7 14.4 208 15-222 83-365 (417)
3 3fs3_A Nucleosome assembly pro 100.0 1.1E-58 3.6E-63 420.5 20.3 219 15-233 42-305 (359)
4 3kyp_A Pfnaps, nucleosome asse 100.0 1.7E-57 5.8E-62 384.9 11.3 189 28-221 2-192 (193)
5 2zd7_A VPS75, vacuolar protein 100.0 4.4E-56 1.5E-60 392.5 15.6 196 29-224 9-223 (264)
6 2jo8_A Serine/threonine-protei 94.6 0.083 2.8E-06 34.4 5.4 36 31-66 12-47 (51)
7 2p2u_A HOST-nuclease inhibitor 89.8 0.76 2.6E-05 37.2 6.6 57 21-77 15-71 (171)
8 2zd7_A VPS75, vacuolar protein 66.4 13 0.00045 31.8 6.6 45 22-66 9-53 (264)
9 3bhp_A UPF0291 protein YNZC; N 46.9 29 0.00099 23.1 4.2 44 20-64 2-45 (60)
10 2jvd_A UPF0291 protein YNZC; s 39.1 33 0.0011 22.3 3.5 42 20-62 2-43 (54)
11 3vem_A Helicase protein MOM1; 38.2 76 0.0026 23.7 5.8 44 39-85 60-106 (115)
12 2hep_A UPF0291 protein YNZC; S 31.6 55 0.0019 23.2 3.9 44 20-64 2-45 (85)
13 2k48_A Nucleoprotein; viral pr 31.4 1.2E+02 0.0041 22.3 5.8 56 16-74 25-87 (107)
14 3twe_A Alpha4H; unknown functi 29.3 71 0.0024 17.1 3.4 17 28-44 7-23 (27)
15 3jux_A Protein translocase sub 27.8 1E+02 0.0036 30.6 6.5 45 29-73 621-665 (822)
16 3vem_A Helicase protein MOM1; 25.2 2.1E+02 0.0073 21.3 7.0 37 33-69 65-101 (115)
17 2fsf_A Preprotein translocase 23.4 1.4E+02 0.0047 30.0 6.5 45 29-73 617-661 (853)
18 2iu1_A EIF5, eukaryotic transl 23.3 17 0.00058 30.1 -0.1 10 218-227 151-160 (208)
19 1nkt_A Preprotein translocase 23.2 1.4E+02 0.0049 30.1 6.6 45 29-73 651-695 (922)
20 2ic6_A Nucleocapsid protein; h 22.5 1.6E+02 0.0055 20.4 4.9 47 28-74 4-57 (78)
21 2ipc_A Preprotein translocase 22.2 1.5E+02 0.0052 30.1 6.6 45 29-73 732-776 (997)
22 2zqm_A Prefoldin beta subunit 21.9 2.2E+02 0.0075 20.2 6.3 28 19-46 3-30 (117)
23 2fzt_A Hypothetical protein TM 21.2 95 0.0033 21.5 3.4 26 52-77 15-40 (79)
24 1tf5_A Preprotein translocase 20.4 1.8E+02 0.006 29.1 6.6 44 30-73 580-623 (844)
No 1
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=8.4e-62 Score=419.85 Aligned_cols=215 Identities=41% Similarity=0.794 Sum_probs=174.8
Q ss_pred CCCCcccccccccc----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcc
Q 026031 1 MVADRGKKSKVAED----ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPD 76 (244)
Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~ 76 (244)
|++|++||+|+++. .+...++++++.+|.+|+.||.+++.|++++++++++|+++|+++++|+|++|++||++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~ 80 (225)
T 2e50_A 1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN 80 (225)
T ss_dssp CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence 88999999999744 25778899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEeecCCCceeeecceeec
Q 026031 77 FWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKW 156 (244)
Q Consensus 77 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~g~~~~~~t~I~W 156 (244)
||++||+||+.++.+|++.|++||+||+||+|++..++..||+|+|+|++||||+|++|||+|++..+|.+++++|+|+|
T Consensus 81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g~~~s~~t~I~W 160 (225)
T 2e50_A 81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKW 160 (225)
T ss_dssp HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-------CEEECCCCB
T ss_pred HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCCCcccCCCccee
Confidence 99999999999999999999999999999999999887899999999999999999999999999988888899999999
Q ss_pred cCCCCCCccccccc--CCCCccc-cccccccccccccccccccchHHHHHHHHhccccchhhhhcc
Q 026031 157 KEGMGSTNGINHEK--NGNKRPL-AEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNN 219 (244)
Q Consensus 157 k~gk~~t~~~~~~k--~~~~r~~-~~~SFF~~F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~g 219 (244)
|+|+++|++..+++ +|++|.. +..|||+||+++..+ ..++||++|+++|||+||+||+.
T Consensus 161 k~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~----~~~eige~ikd~i~P~av~yy~~ 222 (225)
T 2e50_A 161 KSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA----GADELGEVIKDDIWPNPLQYYLV 222 (225)
T ss_dssp CSSCCC----------------------CGGGGC----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred cCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC----chhHHHHHHHhCccccHHHHhcC
Confidence 99999998765443 2444443 468999999988765 35899999999999999999984
No 2
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=7.4e-60 Score=437.73 Aligned_cols=208 Identities=29% Similarity=0.575 Sum_probs=183.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhh-----------------------
Q 026031 15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII----------------------- 71 (244)
Q Consensus 15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI----------------------- 71 (244)
.++.+||+.|+++|.+|+.||.++..|+++|++++++|+++|.++++|||++|++||
T Consensus 83 ~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~~~ 162 (417)
T 2ayu_A 83 GYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNE 162 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHTTC
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchhhh
Confidence 357789999999999999999999999999999999999999999999999999998
Q ss_pred --------------------ccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEe--ccCCC
Q 026031 72 --------------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIF--NENPH 129 (244)
Q Consensus 72 --------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F--~~Npy 129 (244)
++||+||++||+||+.|+.+|+++|++||+||+||+|++..++..||+|+|+| .+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpY 242 (417)
T 2ayu_A 163 TELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF 242 (417)
T ss_dssp GGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSS
T ss_pred hhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCcc
Confidence 58999999999999999999999999999999999999988768899999999 99999
Q ss_pred cccceEEEEEeecCC----Cce---eeecceeeccC-CCCCCcccccccCCC-----Ccc----cccccccccccccccc
Q 026031 130 FENTKLSKTFTFLDE----GTT---KITGTVIKWKE-GMGSTNGINHEKNGN-----KRP----LAEESFFSWFAETEQK 192 (244)
Q Consensus 130 F~N~~L~K~~~~~~~----g~~---~~~~t~I~Wk~-gk~~t~~~~~~k~~~-----~r~----~~~~SFF~~F~~~~~~ 192 (244)
|+|++|||+|++... |+. .+++|+|+||+ |+++|++..++|+++ .|+ ++..|||+||+++..+
T Consensus 243 F~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~~p 322 (417)
T 2ayu_A 243 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQ 322 (417)
T ss_dssp BCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSC
T ss_pred ccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCCCC
Confidence 999999999999743 443 47999999999 999998876554332 233 3568999999987654
Q ss_pred ccc-------------cchHHHHHHHHhccccchhhhhccccC
Q 026031 193 DFV-------------ELQDEVAEIIKEDLWPNPLKYFNNEAG 222 (244)
Q Consensus 193 ~~~-------------~~~~ei~~~i~dei~p~al~yy~g~~~ 222 (244)
+.. +.+++||++|+++|||+||.||+|++.
T Consensus 323 ~~dede~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~ 365 (417)
T 2ayu_A 323 NEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAAL 365 (417)
T ss_dssp CCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccc
Confidence 321 256799999999999999999999744
No 3
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=1.1e-58 Score=420.52 Aligned_cols=219 Identities=26% Similarity=0.480 Sum_probs=171.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhc----------cCcchhhHHhhh
Q 026031 15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIK----------SIPDFWLNAFLS 84 (244)
Q Consensus 15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~----------~IP~FW~~vl~n 84 (244)
+++..||+.|+++|.+|+.||.++..+++++++++++|++||+++++|+|++|++||. +||+||++||+|
T Consensus 42 ~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl~N 121 (359)
T 3fs3_A 42 DKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRALRN 121 (359)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHHHT
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHHHh
Confidence 5689999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred chhhhcccCcchHHhhcCcceeEEEEcc---CCCcCeEEEEEeccCCCcccceEEEEEeecCC---Cc---eeeecceee
Q 026031 85 HPVLCDLLNEEDQKIFKYMNSLDVEDFK---DVKSGYCITFIFNENPHFENTKLSKTFTFLDE---GT---TKITGTVIK 155 (244)
Q Consensus 85 ~~~l~~~i~~~D~~iL~~L~dI~Ve~~~---d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~---g~---~~~~~t~I~ 155 (244)
|++++.+|++.|+++|+||+||+|+++. +.+++|+|+|+|++||||+|++|+|+|++... |. ..+++|+|+
T Consensus 122 hp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~I~ 201 (359)
T 3fs3_A 122 NNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVID 201 (359)
T ss_dssp SHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECCCC
T ss_pred chHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeeeee
Confidence 9999999999999999999999999863 45899999999999999999999999999743 22 247999999
Q ss_pred ccCCCCCCcccccccCCCC-----c----ccccccccccccccccccc-----------------ccchHHHHHHHHhcc
Q 026031 156 WKEGMGSTNGINHEKNGNK-----R----PLAEESFFSWFAETEQKDF-----------------VELQDEVAEIIKEDL 209 (244)
Q Consensus 156 Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~-----------------~~~~~ei~~~i~dei 209 (244)
||+||++|++..++|++++ | ..+..|||+||+++.++.. ++.+++||++|+++|
T Consensus 202 WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd~I 281 (359)
T 3fs3_A 202 WYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERI 281 (359)
T ss_dssp BCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHHTH
T ss_pred EeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHhce
Confidence 9999999988765443322 2 2467899999999876532 124688999999999
Q ss_pred ccchhhhhccccCCCCCCCCCCCC
Q 026031 210 WPNPLKYFNNEAGEEESDGDDEEN 233 (244)
Q Consensus 210 ~p~al~yy~g~~~~e~~~~~~~~~ 233 (244)
||+||+||+|++.++++++-+.+.
T Consensus 282 iP~av~yftGea~e~e~~~~~~d~ 305 (359)
T 3fs3_A 282 IPYAVDYYLGIIIESESNSIVSDV 305 (359)
T ss_dssp HHHHHHHHTTCC------------
T ss_pred ecChHHhhCCcccccccCCccccc
Confidence 999999999998877765554443
No 4
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-57 Score=384.92 Aligned_cols=189 Identities=32% Similarity=0.672 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCcchHHhhcCcceeE
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD 107 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ 107 (244)
+.+|+.||.+++.+++++++++++|+++|+++++|+|++|++||++||+||++||+|||+++.++ +.|+++|+||+||+
T Consensus 2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~ 80 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD 80 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence 57899999999999999999999999999999999999999999999999999999999999865 79999999999999
Q ss_pred EEEccCCCcCeEEEEEecc--CCCcccceEEEEEeecCCCceeeecceeeccCCCCCCcccccccCCCCccccccccccc
Q 026031 108 VEDFKDVKSGYCITFIFNE--NPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSW 185 (244)
Q Consensus 108 Ve~~~d~~~~f~l~F~F~~--NpyF~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~~ 185 (244)
|++..+++.||+|+|+|++ ||||+|++|+|+|++..+|..++++|+|+||+|+++|++..++++...+..+..|||+|
T Consensus 81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~w 160 (193)
T 3kyp_A 81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEW 160 (193)
T ss_dssp CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC----CCCCCCCCCCCSSCCCCC--------------CCCTTTT
T ss_pred EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCCCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhhh
Confidence 9988777899999999998 89999999999999998888889999999999999997654443322334567899999
Q ss_pred cccccccccccchHHHHHHHHhccccchhhhhcccc
Q 026031 186 FAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEA 221 (244)
Q Consensus 186 F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~g~~ 221 (244)
|+++.++ .+++||++|+++||||||+||+|+.
T Consensus 161 F~~~~~~----~~~eige~ikd~i~P~~l~yy~ge~ 192 (193)
T 3kyp_A 161 FTTDELQ----DKPDVGELIRREIWHNPLSYYLGLE 192 (193)
T ss_dssp CCSSCCT----TTTCTTHHHHTTTTTCHHHHHC---
T ss_pred cCCCCcC----CchHHHHHHHhCeeeCHHHHhCCCC
Confidence 9998765 5788999999999999999999964
No 5
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=4.4e-56 Score=392.49 Aligned_cols=196 Identities=22% Similarity=0.386 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEE
Q 026031 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDV 108 (244)
Q Consensus 29 ~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~V 108 (244)
.+|..++.++..++.++.++.++++++|.++++|+|++|++||++||+||++||+|||.|+.+|++.|++||+||++|+|
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v 88 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKV 88 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEE
Confidence 34666677777777777777788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc-----cCCCcCeEEEEEecc-CCCcccceEEEEEeecCC--C--c--eeeecceeeccCCCCCC-cccccccC---C
Q 026031 109 EDF-----KDVKSGYCITFIFNE-NPHFENTKLSKTFTFLDE--G--T--TKITGTVIKWKEGMGST-NGINHEKN---G 172 (244)
Q Consensus 109 e~~-----~d~~~~f~l~F~F~~-NpyF~N~~L~K~~~~~~~--g--~--~~~~~t~I~Wk~gk~~t-~~~~~~k~---~ 172 (244)
+++ .+.++||+|+|+|++ ||||+|++|||+|++..+ | . .++++|+|+||+|++++ .+..++|+ |
T Consensus 89 ~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~ 168 (264)
T 2zd7_A 89 EWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEG 168 (264)
T ss_dssp EEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHH
T ss_pred EEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhcccccc
Confidence 996 566899999999999 999999999999999764 3 2 67899999999987654 33332221 1
Q ss_pred CCc-ccccccccccccccccccc--ccchHHHHHHHHhccccchhhhhccccCCC
Q 026031 173 NKR-PLAEESFFSWFAETEQKDF--VELQDEVAEIIKEDLWPNPLKYFNNEAGEE 224 (244)
Q Consensus 173 ~~r-~~~~~SFF~~F~~~~~~~~--~~~~~ei~~~i~dei~p~al~yy~g~~~~e 224 (244)
.++ .....|||+||+++..+++ ...+++||++|+++|||+||+||+|.+.+.
T Consensus 169 ~~~~r~~~~SFF~fF~~~~~~~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~d~ 223 (264)
T 2zd7_A 169 KKKYRQGMKTIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQRDL 223 (264)
T ss_dssp HHHHHHHHTSHHHHTTCCSSSTTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCCcceecCCCCCCccccccCchhHHHHHHhhhccCHHHHhccccccc
Confidence 111 1244799999998865432 236899999999999999999999976654
No 6
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=94.59 E-value=0.083 Score=34.38 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026031 31 LQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNK 66 (244)
Q Consensus 31 L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~k 66 (244)
+..|+..+..|+.++++|+-++.+.|..+++|+.+.
T Consensus 12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldA 47 (51)
T 2jo8_A 12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDA 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 456788889999999999999999999999999864
No 7
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=89.84 E-value=0.76 Score=37.19 Aligned_cols=57 Identities=7% Similarity=0.264 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcch
Q 026031 21 DTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDF 77 (244)
Q Consensus 21 ~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~F 77 (244)
-.++-.++..+..|+.++..++..+..++.++...|....+|+-.+...+-..|-.|
T Consensus 15 ~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 15 IRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999999999999998887777766655
No 8
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=66.37 E-value=13 Score=31.85 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026031 22 TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNK 66 (244)
Q Consensus 22 ~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~k 66 (244)
.+++.++.+|..||.++..++.++.++..++.+-...+++.+...
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~ 53 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDE 53 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 468899999999999999999999999999988888887777754
No 9
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=46.92 E-value=29 Score=23.06 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026031 20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVY 64 (244)
Q Consensus 20 ~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 64 (244)
++++...+|..|...++. ..|-.+-..|..+|++.|.+.++--+
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~~~ 45 (60)
T 3bhp_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRSSM 45 (60)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999998887 45555556677888888887765544
No 10
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=39.11 E-value=33 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026031 20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRP 62 (244)
Q Consensus 20 ~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~P 62 (244)
++++...+|..|...++. ..|-.+-..|..+|++.|.+.++-
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~ 43 (54)
T 2jvd_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRS 43 (54)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999998877 445555556777788888766543
No 11
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=38.18 E-value=76 Score=23.74 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhH---HHhHhhhccCcchhhHHhhhc
Q 026031 39 EKVNEEASDKVLEIEQKYNEIRRPVY---NKRNEIIKSIPDFWLNAFLSH 85 (244)
Q Consensus 39 ~~le~~~~~e~~~le~k~~~~~~Pl~---~kR~eiI~~IP~FW~~vl~n~ 85 (244)
..|..+|.+|+-++.+||..+++-+- .++. +.+...--.|+.|-
T Consensus 60 lqLkse~e~E~ae~k~KYD~~lqe~ese~~~kk---K~le~~~~kV~mNk 106 (115)
T 3vem_A 60 SILKAELERKMAEVQAEFRRKFHEVEAEHNTRT---TKIEKDKNLVIMNK 106 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34556788888888899888876643 3332 23334455666654
No 12
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=31.56 E-value=55 Score=23.23 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026031 20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVY 64 (244)
Q Consensus 20 ~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 64 (244)
++.+...+|..|...++. ..|-.+-..|..+|++.|.+.++--+
T Consensus 2 m~~~~i~RINeLakK~K~-~GLT~eEk~EQ~~LR~eYl~~fR~~~ 45 (85)
T 2hep_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRSSM 45 (85)
T ss_dssp CCSHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCC---
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999998887 44555555667777887776655433
No 13
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.43 E-value=1.2e+02 Score=22.28 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=36.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----hhhhhHHHhHhhhccC
Q 026031 16 NADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIE---QKYNE----IRRPVYNKRNEIIKSI 74 (244)
Q Consensus 16 ~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le---~k~~~----~~~Pl~~kR~eiI~~I 74 (244)
+...+++=. +..|+.||.++...+.+.--...+|+ +.|.+ .-+--|.+|...|+.+
T Consensus 25 ~~~~~~~~t---M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsal 87 (107)
T 2k48_A 25 YFQGIDPFT---MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTL 87 (107)
T ss_dssp CCCCCCSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 345555555 77788889999998888765555553 33332 3455788888887653
No 14
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=29.35 E-value=71 Score=17.14 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026031 28 IEKLQEVQDELEKVNEE 44 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~ 44 (244)
...|++||..+.++..+
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677778777777644
No 15
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=27.81 E-value=1e+02 Score=30.64 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 29 ~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
.++...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 621 ~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~~R~~iL~~ 665 (822)
T 3jux_A 621 KLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLE 665 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778999999998999999998888899999999999999975
No 16
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=25.20 E-value=2.1e+02 Score=21.28 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHh
Q 026031 33 EVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNE 69 (244)
Q Consensus 33 ~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~e 69 (244)
+|.+++.++..++...+.+++..|..+.+-+-..++.
T Consensus 65 e~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~k 101 (115)
T 3vem_A 65 ELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNL 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444444443
No 17
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=23.36 E-value=1.4e+02 Score=29.96 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 29 ~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
.++...|+.++..+-...+.+++...--+.+++-+|++|+.++.+
T Consensus 617 ~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~ 661 (853)
T 2fsf_A 617 KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV 661 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 446667888888888888888888888889999999999999965
No 18
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=23.25 E-value=17 Score=30.11 Aligned_cols=10 Identities=50% Similarity=0.425 Sum_probs=5.3
Q ss_pred ccccCCCCCC
Q 026031 218 NNEAGEEESD 227 (244)
Q Consensus 218 ~g~~~~e~~~ 227 (244)
+.++++|+|+
T Consensus 151 L~EAEEEs~e 160 (208)
T 2iu1_A 151 LKEAEEESSG 160 (208)
T ss_dssp HHCSSCCCCC
T ss_pred HHcccccccc
Confidence 4456665543
No 19
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=23.21 E-value=1.4e+02 Score=30.12 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 29 ~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
.++...|+.++..+-...+.+++...--+.+++-+|++|+.++.+
T Consensus 651 ~~ie~aQkkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~ 695 (922)
T 1nkt_A 651 RAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG 695 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456667999999998888888888888889999999999999965
No 20
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.48 E-value=1.6e+02 Score=20.43 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----hhhhhHHHhHhhhccC
Q 026031 28 IEKLQEVQDELEKVNEEASDKVLEIE---QKYNE----IRRPVYNKRNEIIKSI 74 (244)
Q Consensus 28 i~~L~~lq~e~~~le~~~~~e~~~le---~k~~~----~~~Pl~~kR~eiI~~I 74 (244)
+..|+.||.++...+.+.--...+|. +.|.. .-+--|.+|...|+.+
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~l 57 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSAL 57 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 45677888888888877655555443 22322 4455788888887653
No 21
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=22.23 E-value=1.5e+02 Score=30.12 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 29 ~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
.++...|+..+..+-...+.+++...--+.+++-+|++|+.++.+
T Consensus 732 ~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 776 (997)
T 2ipc_A 732 RSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLG 776 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677999999998888888888888889999999999999976
No 22
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.86 E-value=2.2e+02 Score=20.20 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026031 19 GIDTELVLSIEKLQEVQDELEKVNEEAS 46 (244)
Q Consensus 19 ~~~~~v~~~i~~L~~lq~e~~~le~~~~ 46 (244)
.+|++++..+..+..+|.++..+..+..
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~ 30 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQ 30 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999986653
No 23
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=21.18 E-value=95 Score=21.46 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=19.1
Q ss_pred HHHHHHHhhhhhHHHhHhhhccCcch
Q 026031 52 IEQKYNEIRRPVYNKRNEIIKSIPDF 77 (244)
Q Consensus 52 le~k~~~~~~Pl~~kR~eiI~~IP~F 77 (244)
+++.-+.....+..+|..+++++|.=
T Consensus 15 IE~edyE~L~~LL~kREkLlk~L~~e 40 (79)
T 2fzt_A 15 IEKEDYETLLSLLNKRKELMEGLPKD 40 (79)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhCcHH
Confidence 45555566777888999999888653
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=20.45 E-value=1.8e+02 Score=29.14 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc
Q 026031 30 KLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS 73 (244)
Q Consensus 30 ~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 73 (244)
++...|..++..+-...+.+++...--+.+++-+|++|+.++.+
T Consensus 580 ~i~~aq~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~ 623 (844)
T 1tf5_A 580 AVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS 623 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56667888888888888888888888889999999999999975
Done!