BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026032
         (244 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp.
           japonica GN=PDR12 PE=2 SV=1
          Length = 1500

 Score = 32.7 bits (73), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 72  KEINGSGIFVANGENGASESDAGN----RNNRTSVRVYQQAMNGISQISFSAEETVSPKK 127
           KE  G+G       NG+++S+ GN    R  R S R+   + NG+S++         P++
Sbjct: 824 KEAEGNGDARHTVRNGSTKSNGGNHKEMREMRLSARLSNSSSNGVSRLMSIGSNEAGPRR 883

Query: 128 PTSVP 132
              +P
Sbjct: 884 GMVLP 888


>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3
          Length = 1140

 Score = 32.0 bits (71), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 136 KQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESK 190
           K+R+ S  L  +   K  +Q++D   + +  +++F   P++Q  S    R LE++
Sbjct: 227 KERDFSMFLNLDEVFKVMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEAR 281


>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2
          Length = 1134

 Score = 32.0 bits (71), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 136 KQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFSPAPEIQPRSLAAARSLESK 190
           K+R+ S  L  +   K  +Q++D   + +  +++F   P++Q  S    R LE++
Sbjct: 227 KERDFSTFLNLDEVFKIMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEAR 281


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.126    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,368,176
Number of Sequences: 539616
Number of extensions: 3506934
Number of successful extensions: 10092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 10050
Number of HSP's gapped (non-prelim): 127
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)