Query 026032
Match_columns 244
No_of_seqs 90 out of 92
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13266 DUF4057: Protein of u 100.0 4.2E-94 9E-99 652.5 14.8 226 2-228 2-255 (302)
2 PF13266 DUF4057: Protein of u 100.0 7.1E-41 1.5E-45 304.9 9.1 154 29-210 101-294 (302)
3 PF14493 HTH_40: Helix-turn-he 27.9 30 0.00065 26.2 1.0 15 128-142 13-27 (91)
4 KOG0487 Transcription factor A 24.0 38 0.00083 32.4 1.1 35 136-170 264-308 (308)
5 PF10313 DUF2415: Uncharacteri 15.1 50 0.0011 23.1 -0.1 10 13-22 15-24 (43)
6 PF07402 Herpes_U26: Human her 8.7 1.3E+02 0.0028 28.4 0.3 24 212-237 264-287 (293)
7 KOG4564 Adenylate cyclase-coup 7.6 1.9E+02 0.0041 29.3 0.9 12 232-243 167-178 (473)
8 TIGR01352 tonB_Cterm TonB fami 6.6 63 0.0014 22.4 -2.2 38 134-171 2-39 (74)
9 KOG0374 Serine/threonine speci 5.8 3.3E+02 0.0072 26.1 1.5 63 12-85 205-276 (331)
10 PF03544 TonB_C: Gram-negative 5.4 88 0.0019 21.9 -2.0 41 131-171 5-45 (79)
No 1
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=100.00 E-value=4.2e-94 Score=652.46 Aligned_cols=226 Identities=68% Similarity=0.987 Sum_probs=214.6
Q ss_pred CCCCCCCCCCccccccCCCCCCCCCC---CCCCCCCCCCCCCCCcceeeeCCccchHHHHhhhccCCCCccccccccCCC
Q 026032 2 ATPVRKSHVSTSDLLTWPEAPSSDSS---HPPASAPRSHQPSDGVSKVLFGGQITDEEAQSLNKKKPCSGYKLKEINGSG 78 (244)
Q Consensus 2 ~~pvr~~htstadLltW~e~~~~~~~---~~~~~~~R~~QP~~giS~IsFG~q~T~Eea~~l~krK~~S~aK~KEmsGsg 78 (244)
++|||+|||||||||+|+|+|+++++ +++++++|+|||++|||+|+||+|+|+||+|+|+||||||++|||||||||
T Consensus 2 ~~pvR~~HtsTadLltWse~~~~~~~~~~~~~~~a~RshQPs~giskv~fGgQvT~EEAEsL~KRKpCS~~K~KEmTGSG 81 (302)
T PF13266_consen 2 ATPVRKPHTSTADLLTWSETPPPDSPAASSTSRPARRSHQPSDGISKVVFGGQVTEEEAESLNKRKPCSGYKMKEMTGSG 81 (302)
T ss_pred CCCccCCCcCchhhccccCCCCcccccccCCCCCCCCCCCCcccccccccCCcCCHHHHHHHhccCcCccccceeccccc
Confidence 68999999999999999999987665 367899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCcchhhccccCCccceeecCcccCCCCCCCChhHHhhhhhccCCcccchhhhhhhhhh
Q 026032 79 IFVANGENGASESDAGNR-NNRTSVRVYQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQIS 157 (244)
Q Consensus 79 IFa~~~e~~~~~~~~~~~-~~~ts~r~~~q~~~g~S~IsFgee~s~sPkKpts~~evAKQrELSGt~~se~d~K~~Kqis 157 (244)
||++++++++++++.+|+ ++||++|||||+++|+|||||++||+|||||||||+||||||||||||++|+|+|++||||
T Consensus 82 IF~~~~e~~~se~~san~~~~rt~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~D~k~kkq~S 161 (302)
T PF13266_consen 82 IFSANGEDDASESGSANPTPNRTGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEADSKMKKQIS 161 (302)
T ss_pred ccccCCCCcccccccCCCCccccccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccchhhHHHhhhh
Confidence 999999999999988876 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCCCCCCccHHHhhhhccccCCCCCCCCCC------------------------Cccccccccccc
Q 026032 158 DAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPR------------------------NVRTSVKVSNVS 213 (244)
Q Consensus 158 ~aK~kELsG~dIF~pp~~~kp~S~Aklrem~g~~if~dgk~~~r------------------------~~~~~kk~~~qK 213 (244)
|||+|||+|||||+||++++||+++ .|.|+.+++++.+++.++ .+++++|||+||
T Consensus 162 ~AK~KELSGhdIFapp~~~~pr~~~-~r~le~k~~~~~~e~~~~~~~ts~~~~n~a~~~s~~~~~~~~~~Ktakki~~~K 240 (302)
T PF13266_consen 162 NAKSKELSGHDIFAPPPEIKPRSLT-ARSLELKENKDRGEPAPRNVRTSVKVSNPAGGQSNIEFGEDSVVKTAKKISNQK 240 (302)
T ss_pred hhhhhhcccCcccCCCccCCCCcch-hhhhhhcccccccCCCCCcccccccccCCcCcccccccccCcchhhhhhhhhhh
Confidence 9999999999999999999999985 699999999999988554 228999999999
Q ss_pred ccccccCCccCCCcc
Q 026032 214 YFCYARNFLFSLYSF 228 (244)
Q Consensus 214 ~~eLtGn~IFk~d~~ 228 (244)
|+||+||||||+|.+
T Consensus 241 ~aeltGN~IFk~d~p 255 (302)
T PF13266_consen 241 FAELTGNNIFKGDVP 255 (302)
T ss_pred hhhcccCcccCCCCC
Confidence 999999999999974
No 2
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=100.00 E-value=7.1e-41 Score=304.92 Aligned_cols=154 Identities=33% Similarity=0.438 Sum_probs=139.3
Q ss_pred CCCCCCCCCC-CCCCcceeeeCCcc---------------------chHHHHhhhccCCCCccccccccCCCCCCCCCCC
Q 026032 29 PPASAPRSHQ-PSDGVSKVLFGGQI---------------------TDEEAQSLNKKKPCSGYKLKEINGSGIFVANGEN 86 (244)
Q Consensus 29 ~~~~~~R~~Q-P~~giS~IsFG~q~---------------------T~Eea~~l~krK~~S~aK~KEmsGsgIFa~~~e~ 86 (244)
+.++++|+|| ..+|||||+||+++ |+|.+.|++++||+|++|.|||+|||||++++++
T Consensus 101 ~~rt~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~D~k~kkq~S~AK~KELSGhdIFapp~~~ 180 (302)
T PF13266_consen 101 PNRTGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEADSKMKKQISNAKSKELSGHDIFAPPPEI 180 (302)
T ss_pred ccccccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccchhhHHHhhhhhhhhhhcccCcccCCCccC
Confidence 3489999997 45899999999998 8998889999999999999999999999999999
Q ss_pred CCCCCC--------------CCCCCCCCcchhhccccCCccceeecCcccCCCCCCCChhHHhhhhhccCCcccchhhhh
Q 026032 87 GASESD--------------AGNRNNRTSVRVYQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKT 152 (244)
Q Consensus 87 ~~~~~~--------------~~~~~~~ts~r~~~q~~~g~S~IsFgee~s~sPkKpts~~evAKQrELSGt~~se~d~K~ 152 (244)
.|+... .++.+.++++++.+++ +|.|+|.|++ |+++|+
T Consensus 181 ~pr~~~~r~le~k~~~~~~e~~~~~~~ts~~~~n~a-~~~s~~~~~~---------------------------~~~~Kt 232 (302)
T PF13266_consen 181 KPRSLTARSLELKENKDRGEPAPRNVRTSVKVSNPA-GGQSNIEFGE---------------------------DSVVKT 232 (302)
T ss_pred CCCcchhhhhhhcccccccCCCCCcccccccccCCc-Cccccccccc---------------------------Ccchhh
Confidence 998821 2335789999999877 9999999997 689999
Q ss_pred hhhhhhhhhhhhcCCCCCC----CCCCCCCccHHHhhhhccccCCCCCCCCCCCcccccccc
Q 026032 153 KKQISDAKFKEISGHDIFS----PAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVS 210 (244)
Q Consensus 153 ~Kqis~aK~kELsG~dIF~----pp~~~kp~S~Aklrem~g~~if~dgk~~~r~~~~~kk~~ 210 (244)
.|+|+|+|++||+|||||+ |.++++++|.||||||+|++||+||++..|||++|+|+.
T Consensus 233 akki~~~K~aeltGN~IFk~d~p~~saek~lS~AKlrEmsGsdIFaDgk~~~rd~~gg~rkP 294 (302)
T PF13266_consen 233 AKKISNQKFAELTGNNIFKGDVPPASAEKPLSSAKLREMSGSDIFADGKAESRDYLGGVRKP 294 (302)
T ss_pred hhhhhhhhhhhcccCcccCCCCCCCCcccchhhhhHhhcccccccccCCcccchhcCCccCC
Confidence 9999999999999999999 355799999999999999999999999999999999873
No 3
>PF14493 HTH_40: Helix-turn-helix domain
Probab=27.89 E-value=30 Score=26.25 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=12.7
Q ss_pred CCChhHHhhhhhccC
Q 026032 128 PTSVPEVAKQRELSG 142 (244)
Q Consensus 128 pts~~evAKQrELSG 142 (244)
--|+.|||++|.|+=
T Consensus 13 G~si~eIA~~R~L~~ 27 (91)
T PF14493_consen 13 GLSIEEIAKIRGLKE 27 (91)
T ss_pred CCCHHHHHHHcCCCH
Confidence 368999999999973
No 4
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=23.99 E-value=38 Score=32.43 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=27.0
Q ss_pred hhhhccCCcc-cchhh---------hhhhhhhhhhhhhhcCCCCC
Q 026032 136 KQRELSGSLQ-SESDL---------KTKKQISDAKFKEISGHDIF 170 (244)
Q Consensus 136 KQrELSGt~~-se~d~---------K~~Kqis~aK~kELsG~dIF 170 (244)
|-+|||-+|. +|--+ |.||-....+.+|+++|.+|
T Consensus 264 KR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r~~~~t~n~~~ 308 (308)
T KOG0487|consen 264 KRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENRLKELTGNPLF 308 (308)
T ss_pred HHHHHHHhcccchhheeeeehhhhhHHhhhhhhhhccccccccCC
Confidence 5679999988 77544 45555566899999999987
No 5
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=15.08 E-value=50 Score=23.10 Aligned_cols=10 Identities=50% Similarity=1.042 Sum_probs=8.1
Q ss_pred cccccCCCCC
Q 026032 13 SDLLTWPEAP 22 (244)
Q Consensus 13 adLltW~e~~ 22 (244)
-|||.|+|-.
T Consensus 15 ~DLL~~~E~~ 24 (43)
T PF10313_consen 15 NDLLAWAEHQ 24 (43)
T ss_pred ccEEEEEccC
Confidence 4999999853
No 6
>PF07402 Herpes_U26: Human herpesvirus U26 protein; InterPro: IPR009980 This family consists of several Human herpesvirus U26 proteins of around 300 residues in length. The function of this family is unknown.; GO: 0016021 integral to membrane
Probab=8.69 E-value=1.3e+02 Score=28.41 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=18.3
Q ss_pred ccccccccCCccCCCccchhhHHHHh
Q 026032 212 VSYFCYARNFLFSLYSFHLNLFFCFL 237 (244)
Q Consensus 212 qK~~eLtGn~IFk~d~~~~~~~~~~~ 237 (244)
|-..++-..+||-||. ||+|||..
T Consensus 264 ~iS~~~~~r~~~~GDL--LN~F~C~~ 287 (293)
T PF07402_consen 264 QISSDVKRRSFFTGDL--LNGFFCSV 287 (293)
T ss_pred HHhhhhcccceehhhh--hhhhhhHh
Confidence 4455667788999986 89999953
No 7
>KOG4564 consensus Adenylate cyclase-coupled calcitonin receptor [Signal transduction mechanisms]
Probab=7.57 E-value=1.9e+02 Score=29.34 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=10.0
Q ss_pred hHHHHhhhcccc
Q 026032 232 LFFCFLKRLHCF 243 (244)
Q Consensus 232 ~~~~~~~~~~~~ 243 (244)
+.||++++|||.
T Consensus 167 ~If~~FR~L~Ct 178 (473)
T KOG4564|consen 167 IIFLYFRSLHCT 178 (473)
T ss_pred HHHHHhhhhcch
Confidence 368999999995
No 8
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=6.59 E-value=63 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=24.9
Q ss_pred HhhhhhccCCcccchhhhhhhhhhhhhhhhhcCCCCCC
Q 026032 134 VAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (244)
Q Consensus 134 vAKQrELSGt~~se~d~K~~Kqis~aK~kELsG~dIF~ 171 (244)
.|+++.+.|++.-+-.....-++.+.++.+-+|+.+|.
T Consensus 2 ~a~~~~~~G~v~v~~~i~~~G~v~~~~i~~ssg~~~ld 39 (74)
T TIGR01352 2 RARRRGIEGTVVVRFTVDADGRVTSVSVLKSSGDEALD 39 (74)
T ss_pred hHHHcCCceEEEEEEEECCCCCEEEEEEEEcCCChhHH
Confidence 36667777777655445555566777777777776664
No 9
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=5.80 E-value=3.3e+02 Score=26.10 Aligned_cols=63 Identities=25% Similarity=0.431 Sum_probs=34.2
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCC-CcceeeeCCccchHHHHhhhc----c-CCCCccccccccCC---CCCCC
Q 026032 12 TSDLLTWPEAPSSDSSHPPASAPRSHQPSD-GVSKVLFGGQITDEEAQSLNK----K-KPCSGYKLKEINGS---GIFVA 82 (244)
Q Consensus 12 tadLltW~e~~~~~~~~~~~~~~R~~QP~~-giS~IsFG~q~T~Eea~~l~k----r-K~~S~aK~KEmsGs---gIFa~ 82 (244)
-.||| |++. +. .+..+.+.+ |+| ++||.++.++--..+.. | .|.......=++|- -||++
T Consensus 205 l~DLl-Wsdp---~~------~~~g~~~n~Rg~s-~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSA 273 (331)
T KOG0374|consen 205 LCDLL-WSDP---DD------DVPGWEENDRGVS-FTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSA 273 (331)
T ss_pred eeeee-ecCC---CC------CCCCcccCCCcee-eEecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecC
Confidence 35787 9952 11 023343333 899 99999886553333332 2 45555555334443 38876
Q ss_pred CCC
Q 026032 83 NGE 85 (244)
Q Consensus 83 ~~e 85 (244)
|..
T Consensus 274 P~Y 276 (331)
T KOG0374|consen 274 PNY 276 (331)
T ss_pred chh
Confidence 643
No 10
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=5.40 E-value=88 Score=21.95 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=29.5
Q ss_pred hhHHhhhhhccCCcccchhhhhhhhhhhhhhhhhcCCCCCC
Q 026032 131 VPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (244)
Q Consensus 131 ~~evAKQrELSGt~~se~d~K~~Kqis~aK~kELsG~dIF~ 171 (244)
-|+.|+++.+.|++.-+-.....=++++.++.+=+|+.+|.
T Consensus 5 YP~~a~~~~~~G~v~v~~~I~~~G~v~~~~v~~s~~~~~l~ 45 (79)
T PF03544_consen 5 YPEEARRRGIEGTVVVEFTIDPDGRVSDVRVIQSSGPPILD 45 (79)
T ss_dssp --CHHHHHTEEEEEEEEEEEETTTEEEEEEEEEESSSSCSH
T ss_pred CCHHHHHCCCeEEEEEEEEEeCCCCEEEEEEEEccCHHHHH
Confidence 46778888889988866555556677788888778877665
Done!